Multiple sequence alignment - TraesCS4B01G132900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G132900 chr4B 100.000 3878 0 0 1 3878 172723665 172719788 0.000000e+00 7162.0
1 TraesCS4B01G132900 chr4D 94.954 2814 123 15 894 3703 111980694 111977896 0.000000e+00 4392.0
2 TraesCS4B01G132900 chr4D 91.493 576 42 6 1 575 111981285 111980716 0.000000e+00 785.0
3 TraesCS4B01G132900 chr4D 91.803 61 5 0 3814 3874 111977449 111977389 6.900000e-13 86.1
4 TraesCS4B01G132900 chr4A 94.848 2795 133 6 897 3689 465274998 465277783 0.000000e+00 4353.0
5 TraesCS4B01G132900 chr4A 92.308 65 5 0 3814 3878 465278552 465278616 4.130000e-15 93.5
6 TraesCS4B01G132900 chr5D 93.960 298 17 1 567 863 397005868 397006165 2.130000e-122 449.0
7 TraesCS4B01G132900 chr7D 94.218 294 15 2 572 864 40665627 40665335 7.640000e-122 448.0
8 TraesCS4B01G132900 chr3A 94.198 293 15 2 572 863 33136061 33135770 2.750000e-121 446.0
9 TraesCS4B01G132900 chr7B 94.158 291 17 0 572 862 139160023 139160313 9.890000e-121 444.0
10 TraesCS4B01G132900 chr6B 94.444 288 16 0 573 860 191444187 191444474 9.890000e-121 444.0
11 TraesCS4B01G132900 chr6B 93.898 295 17 1 571 864 606013328 606013034 9.890000e-121 444.0
12 TraesCS4B01G132900 chr6B 83.784 74 9 2 3231 3301 581190718 581190645 2.500000e-07 67.6
13 TraesCS4B01G132900 chrUn 93.333 300 19 1 568 866 60993090 60992791 3.560000e-120 442.0
14 TraesCS4B01G132900 chr1B 93.878 294 17 1 571 864 483743233 483742941 3.560000e-120 442.0
15 TraesCS4B01G132900 chr2B 93.046 302 19 2 571 871 769943034 769942734 1.280000e-119 440.0
16 TraesCS4B01G132900 chr3D 85.333 75 9 2 3247 3320 13488040 13487967 4.150000e-10 76.8
17 TraesCS4B01G132900 chr3B 86.667 60 4 4 3263 3318 652799764 652799705 3.230000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G132900 chr4B 172719788 172723665 3877 True 7162.000000 7162 100.000 1 3878 1 chr4B.!!$R1 3877
1 TraesCS4B01G132900 chr4D 111977389 111981285 3896 True 1754.366667 4392 92.750 1 3874 3 chr4D.!!$R1 3873
2 TraesCS4B01G132900 chr4A 465274998 465278616 3618 False 2223.250000 4353 93.578 897 3878 2 chr4A.!!$F1 2981

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 894 0.040514 CGATTTTGCTTCGTGCCACA 60.041 50.000 0.00 0.00 42.00 4.17 F
1296 1298 0.469917 CCTGGAACACCGCCATATCT 59.530 55.000 0.00 0.00 34.33 1.98 F
1429 1431 1.067582 GTTGACCTAGGATCCGCGG 59.932 63.158 22.12 22.12 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 1727 0.987294 AGTGTACCTGCATTGCCTCT 59.013 50.000 6.12 0.0 0.00 3.69 R
2744 2746 1.067821 CATCTGGACTAGAACCCGCTC 59.932 57.143 0.00 0.0 39.30 5.03 R
3179 3185 1.267806 CACATCTGAACCCAAGTGTGC 59.732 52.381 0.00 0.0 33.78 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.220586 TGGATCCAAGACCGTGGCA 61.221 57.895 13.46 0.00 38.68 4.92
102 104 4.446413 GCGACCCCGACCATCGTT 62.446 66.667 0.00 0.00 38.40 3.85
140 142 1.663702 CACGAACGAACGGCTCCTT 60.664 57.895 0.14 0.00 37.61 3.36
147 149 2.047179 AACGGCTCCTTCGGCTTC 60.047 61.111 0.00 0.00 0.00 3.86
194 196 2.757124 GGCCTTCGGTGGATCCCAT 61.757 63.158 9.90 0.00 35.28 4.00
258 260 2.430244 GACCACGCGACGATGTGT 60.430 61.111 15.93 0.33 34.28 3.72
266 268 1.431488 GCGACGATGTGTCCATGCAT 61.431 55.000 0.00 0.00 45.23 3.96
324 326 1.075970 CTGACCCCCAGGATCTCGA 60.076 63.158 0.00 0.00 39.23 4.04
348 350 3.134792 TCCAGCGACGCTCTCTCC 61.135 66.667 21.67 0.00 36.40 3.71
350 352 3.805307 CAGCGACGCTCTCTCCGT 61.805 66.667 21.67 0.00 42.31 4.69
379 381 0.106894 GGGCGACAAAGGAGGGATAG 59.893 60.000 0.00 0.00 0.00 2.08
384 386 3.181465 GCGACAAAGGAGGGATAGAATGA 60.181 47.826 0.00 0.00 0.00 2.57
387 389 3.718956 ACAAAGGAGGGATAGAATGAGGG 59.281 47.826 0.00 0.00 0.00 4.30
388 390 3.976654 CAAAGGAGGGATAGAATGAGGGA 59.023 47.826 0.00 0.00 0.00 4.20
390 392 2.113414 AGGAGGGATAGAATGAGGGAGG 59.887 54.545 0.00 0.00 0.00 4.30
391 393 2.112691 GGAGGGATAGAATGAGGGAGGA 59.887 54.545 0.00 0.00 0.00 3.71
392 394 3.440127 GAGGGATAGAATGAGGGAGGAG 58.560 54.545 0.00 0.00 0.00 3.69
394 396 3.077391 AGGGATAGAATGAGGGAGGAGAG 59.923 52.174 0.00 0.00 0.00 3.20
395 397 3.440127 GGATAGAATGAGGGAGGAGAGG 58.560 54.545 0.00 0.00 0.00 3.69
419 421 2.204090 GGGGTGGGGAAGGAGTGA 60.204 66.667 0.00 0.00 0.00 3.41
428 430 0.906066 GGAAGGAGTGAAGGGAGGAC 59.094 60.000 0.00 0.00 0.00 3.85
442 444 4.011517 GGACGGAGGCGTGGGAAA 62.012 66.667 0.00 0.00 0.00 3.13
467 469 1.550976 GTGAAGACAGAGTAGTGGGGG 59.449 57.143 0.00 0.00 0.00 5.40
481 483 2.841317 GGGGGTCTGGGTTCGTTT 59.159 61.111 0.00 0.00 0.00 3.60
485 487 2.265904 GGTCTGGGTTCGTTTGGGC 61.266 63.158 0.00 0.00 0.00 5.36
496 498 1.720694 CGTTTGGGCGACACACCTTT 61.721 55.000 0.00 0.00 0.00 3.11
528 530 1.592400 CTTCTAGGGACGACGTGGCA 61.592 60.000 4.58 0.00 0.00 4.92
541 543 3.936203 TGGCAAGTCGGGAGCGTT 61.936 61.111 0.00 0.00 0.00 4.84
548 550 1.374252 GTCGGGAGCGTTGTGATGT 60.374 57.895 0.00 0.00 0.00 3.06
550 552 1.667830 CGGGAGCGTTGTGATGTGT 60.668 57.895 0.00 0.00 0.00 3.72
551 553 1.868997 GGGAGCGTTGTGATGTGTG 59.131 57.895 0.00 0.00 0.00 3.82
552 554 0.884704 GGGAGCGTTGTGATGTGTGT 60.885 55.000 0.00 0.00 0.00 3.72
568 570 3.058570 TGTGTGTGTTTCAATCATACGGC 60.059 43.478 0.00 0.00 31.30 5.68
570 572 2.413796 GTGTGTTTCAATCATACGGCGA 59.586 45.455 16.62 0.00 0.00 5.54
571 573 3.063452 GTGTGTTTCAATCATACGGCGAT 59.937 43.478 16.62 0.00 0.00 4.58
572 574 4.269123 GTGTGTTTCAATCATACGGCGATA 59.731 41.667 16.62 2.29 0.00 2.92
573 575 4.870991 TGTGTTTCAATCATACGGCGATAA 59.129 37.500 16.62 0.00 0.00 1.75
574 576 5.006261 TGTGTTTCAATCATACGGCGATAAG 59.994 40.000 16.62 0.00 0.00 1.73
575 577 5.233476 GTGTTTCAATCATACGGCGATAAGA 59.767 40.000 16.62 6.20 0.00 2.10
576 578 5.462068 TGTTTCAATCATACGGCGATAAGAG 59.538 40.000 16.62 0.00 0.00 2.85
577 579 3.575630 TCAATCATACGGCGATAAGAGC 58.424 45.455 16.62 0.00 0.00 4.09
578 580 3.005367 TCAATCATACGGCGATAAGAGCA 59.995 43.478 16.62 0.00 36.08 4.26
579 581 3.660501 ATCATACGGCGATAAGAGCAA 57.339 42.857 16.62 0.00 36.08 3.91
580 582 3.013276 TCATACGGCGATAAGAGCAAG 57.987 47.619 16.62 0.00 36.08 4.01
581 583 2.361119 TCATACGGCGATAAGAGCAAGT 59.639 45.455 16.62 0.00 36.08 3.16
582 584 3.566742 TCATACGGCGATAAGAGCAAGTA 59.433 43.478 16.62 0.00 35.19 2.24
583 585 2.205307 ACGGCGATAAGAGCAAGTAC 57.795 50.000 16.62 0.00 36.08 2.73
584 586 1.475280 ACGGCGATAAGAGCAAGTACA 59.525 47.619 16.62 0.00 36.08 2.90
585 587 2.094390 ACGGCGATAAGAGCAAGTACAA 60.094 45.455 16.62 0.00 36.08 2.41
586 588 3.123804 CGGCGATAAGAGCAAGTACAAT 58.876 45.455 0.00 0.00 36.08 2.71
587 589 4.202080 ACGGCGATAAGAGCAAGTACAATA 60.202 41.667 16.62 0.00 36.08 1.90
588 590 4.383052 CGGCGATAAGAGCAAGTACAATAG 59.617 45.833 0.00 0.00 36.08 1.73
589 591 5.529791 GGCGATAAGAGCAAGTACAATAGA 58.470 41.667 0.00 0.00 36.08 1.98
590 592 5.631512 GGCGATAAGAGCAAGTACAATAGAG 59.368 44.000 0.00 0.00 36.08 2.43
591 593 5.117897 GCGATAAGAGCAAGTACAATAGAGC 59.882 44.000 0.00 0.00 34.19 4.09
592 594 6.442952 CGATAAGAGCAAGTACAATAGAGCT 58.557 40.000 0.00 0.00 34.61 4.09
593 595 6.362016 CGATAAGAGCAAGTACAATAGAGCTG 59.638 42.308 0.00 0.00 31.61 4.24
594 596 5.667539 AAGAGCAAGTACAATAGAGCTGA 57.332 39.130 0.00 0.00 31.61 4.26
595 597 5.261209 AGAGCAAGTACAATAGAGCTGAG 57.739 43.478 0.00 0.00 31.61 3.35
596 598 4.709397 AGAGCAAGTACAATAGAGCTGAGT 59.291 41.667 0.00 0.00 31.61 3.41
597 599 5.004922 AGCAAGTACAATAGAGCTGAGTC 57.995 43.478 0.00 0.00 0.00 3.36
598 600 4.464244 AGCAAGTACAATAGAGCTGAGTCA 59.536 41.667 0.00 0.00 0.00 3.41
599 601 4.803088 GCAAGTACAATAGAGCTGAGTCAG 59.197 45.833 16.21 16.21 34.12 3.51
611 613 3.383620 CTGAGTCAGCAGGCTATAAGG 57.616 52.381 7.33 0.00 32.26 2.69
612 614 2.961741 CTGAGTCAGCAGGCTATAAGGA 59.038 50.000 7.33 0.00 32.26 3.36
613 615 3.374764 TGAGTCAGCAGGCTATAAGGAA 58.625 45.455 0.00 0.00 0.00 3.36
614 616 3.969976 TGAGTCAGCAGGCTATAAGGAAT 59.030 43.478 0.00 0.00 0.00 3.01
615 617 5.147767 TGAGTCAGCAGGCTATAAGGAATA 58.852 41.667 0.00 0.00 0.00 1.75
616 618 5.602561 TGAGTCAGCAGGCTATAAGGAATAA 59.397 40.000 0.00 0.00 0.00 1.40
617 619 6.099701 TGAGTCAGCAGGCTATAAGGAATAAA 59.900 38.462 0.00 0.00 0.00 1.40
618 620 6.292150 AGTCAGCAGGCTATAAGGAATAAAC 58.708 40.000 0.00 0.00 0.00 2.01
619 621 6.100424 AGTCAGCAGGCTATAAGGAATAAACT 59.900 38.462 0.00 0.00 0.00 2.66
620 622 7.290248 AGTCAGCAGGCTATAAGGAATAAACTA 59.710 37.037 0.00 0.00 0.00 2.24
621 623 7.600752 GTCAGCAGGCTATAAGGAATAAACTAG 59.399 40.741 0.00 0.00 0.00 2.57
622 624 7.290248 TCAGCAGGCTATAAGGAATAAACTAGT 59.710 37.037 0.00 0.00 0.00 2.57
623 625 8.585881 CAGCAGGCTATAAGGAATAAACTAGTA 58.414 37.037 0.00 0.00 0.00 1.82
624 626 9.327731 AGCAGGCTATAAGGAATAAACTAGTAT 57.672 33.333 0.00 0.00 0.00 2.12
652 654 9.765795 TTTCTACTTAGTTGGAAGAAAGAGAAG 57.234 33.333 4.49 0.00 32.70 2.85
653 655 8.707796 TCTACTTAGTTGGAAGAAAGAGAAGA 57.292 34.615 0.00 0.00 0.00 2.87
654 656 8.798402 TCTACTTAGTTGGAAGAAAGAGAAGAG 58.202 37.037 0.00 0.00 0.00 2.85
655 657 6.764379 ACTTAGTTGGAAGAAAGAGAAGAGG 58.236 40.000 0.00 0.00 0.00 3.69
656 658 6.555360 ACTTAGTTGGAAGAAAGAGAAGAGGA 59.445 38.462 0.00 0.00 0.00 3.71
657 659 5.482163 AGTTGGAAGAAAGAGAAGAGGAG 57.518 43.478 0.00 0.00 0.00 3.69
658 660 5.151454 AGTTGGAAGAAAGAGAAGAGGAGA 58.849 41.667 0.00 0.00 0.00 3.71
659 661 5.245977 AGTTGGAAGAAAGAGAAGAGGAGAG 59.754 44.000 0.00 0.00 0.00 3.20
660 662 5.004361 TGGAAGAAAGAGAAGAGGAGAGA 57.996 43.478 0.00 0.00 0.00 3.10
661 663 5.016173 TGGAAGAAAGAGAAGAGGAGAGAG 58.984 45.833 0.00 0.00 0.00 3.20
662 664 5.222233 TGGAAGAAAGAGAAGAGGAGAGAGA 60.222 44.000 0.00 0.00 0.00 3.10
663 665 5.714806 GGAAGAAAGAGAAGAGGAGAGAGAA 59.285 44.000 0.00 0.00 0.00 2.87
664 666 6.127619 GGAAGAAAGAGAAGAGGAGAGAGAAG 60.128 46.154 0.00 0.00 0.00 2.85
665 667 5.264395 AGAAAGAGAAGAGGAGAGAGAAGG 58.736 45.833 0.00 0.00 0.00 3.46
666 668 4.675063 AAGAGAAGAGGAGAGAGAAGGT 57.325 45.455 0.00 0.00 0.00 3.50
667 669 5.789574 AAGAGAAGAGGAGAGAGAAGGTA 57.210 43.478 0.00 0.00 0.00 3.08
668 670 5.789574 AGAGAAGAGGAGAGAGAAGGTAA 57.210 43.478 0.00 0.00 0.00 2.85
669 671 5.755849 AGAGAAGAGGAGAGAGAAGGTAAG 58.244 45.833 0.00 0.00 0.00 2.34
670 672 4.278310 AGAAGAGGAGAGAGAAGGTAAGC 58.722 47.826 0.00 0.00 0.00 3.09
671 673 2.650322 AGAGGAGAGAGAAGGTAAGCG 58.350 52.381 0.00 0.00 0.00 4.68
672 674 1.679153 GAGGAGAGAGAAGGTAAGCGG 59.321 57.143 0.00 0.00 0.00 5.52
673 675 0.747852 GGAGAGAGAAGGTAAGCGGG 59.252 60.000 0.00 0.00 0.00 6.13
674 676 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.000 0.00 0.00 0.00 6.13
675 677 0.324830 AGAGAGAAGGTAAGCGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
676 678 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
677 679 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
678 680 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
679 681 0.537653 AGAAGGTAAGCGGGCTCTTC 59.462 55.000 10.83 10.83 35.41 2.87
680 682 0.806492 GAAGGTAAGCGGGCTCTTCG 60.806 60.000 0.00 0.00 0.00 3.79
681 683 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
682 684 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
683 685 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
684 686 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
685 687 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.000 3.17 3.17 39.71 3.02
686 688 1.816863 AAGCGGGCTCTTCGTGAAGA 61.817 55.000 11.54 11.54 44.47 2.87
692 694 4.996976 TCTTCGTGAAGAGCCAGC 57.003 55.556 8.19 0.00 42.06 4.85
693 695 2.355946 TCTTCGTGAAGAGCCAGCT 58.644 52.632 8.19 0.00 42.06 4.24
694 696 0.244994 TCTTCGTGAAGAGCCAGCTC 59.755 55.000 11.78 11.78 42.06 4.09
702 704 2.888863 GAGCCAGCTCTAGCACGT 59.111 61.111 12.42 0.00 45.16 4.49
703 705 1.518133 GAGCCAGCTCTAGCACGTG 60.518 63.158 12.28 12.28 45.16 4.49
704 706 3.191539 GCCAGCTCTAGCACGTGC 61.192 66.667 32.79 32.79 45.16 5.34
722 724 3.827008 TGCTCCTAGGCACTTTATGAG 57.173 47.619 2.96 0.00 41.75 2.90
723 725 3.374764 TGCTCCTAGGCACTTTATGAGA 58.625 45.455 2.96 0.00 41.75 3.27
724 726 3.774766 TGCTCCTAGGCACTTTATGAGAA 59.225 43.478 2.96 0.00 41.75 2.87
725 727 4.410228 TGCTCCTAGGCACTTTATGAGAAT 59.590 41.667 2.96 0.00 41.75 2.40
726 728 4.754114 GCTCCTAGGCACTTTATGAGAATG 59.246 45.833 2.96 0.00 41.75 2.67
727 729 5.453903 GCTCCTAGGCACTTTATGAGAATGA 60.454 44.000 2.96 0.00 41.75 2.57
728 730 6.560003 TCCTAGGCACTTTATGAGAATGAA 57.440 37.500 2.96 0.00 41.75 2.57
729 731 6.957631 TCCTAGGCACTTTATGAGAATGAAA 58.042 36.000 2.96 0.00 41.75 2.69
730 732 7.050377 TCCTAGGCACTTTATGAGAATGAAAG 58.950 38.462 2.96 0.00 41.75 2.62
731 733 6.261826 CCTAGGCACTTTATGAGAATGAAAGG 59.738 42.308 0.00 0.00 41.75 3.11
732 734 5.574188 AGGCACTTTATGAGAATGAAAGGT 58.426 37.500 0.00 0.00 27.25 3.50
733 735 5.416952 AGGCACTTTATGAGAATGAAAGGTG 59.583 40.000 0.00 0.00 27.25 4.00
734 736 5.415701 GGCACTTTATGAGAATGAAAGGTGA 59.584 40.000 0.00 0.00 0.00 4.02
735 737 6.404074 GGCACTTTATGAGAATGAAAGGTGAG 60.404 42.308 0.00 0.00 0.00 3.51
736 738 6.549952 CACTTTATGAGAATGAAAGGTGAGC 58.450 40.000 0.00 0.00 0.00 4.26
737 739 5.649831 ACTTTATGAGAATGAAAGGTGAGCC 59.350 40.000 0.00 0.00 0.00 4.70
738 740 3.726557 ATGAGAATGAAAGGTGAGCCA 57.273 42.857 0.00 0.00 37.19 4.75
739 741 2.783135 TGAGAATGAAAGGTGAGCCAC 58.217 47.619 0.00 0.00 37.19 5.01
740 742 2.106338 TGAGAATGAAAGGTGAGCCACA 59.894 45.455 7.49 0.00 35.86 4.17
741 743 3.245016 TGAGAATGAAAGGTGAGCCACAT 60.245 43.478 7.49 0.00 35.86 3.21
742 744 4.019411 TGAGAATGAAAGGTGAGCCACATA 60.019 41.667 7.49 0.00 35.86 2.29
743 745 5.121380 AGAATGAAAGGTGAGCCACATAT 57.879 39.130 7.49 0.00 35.86 1.78
744 746 6.126796 TGAGAATGAAAGGTGAGCCACATATA 60.127 38.462 7.49 0.00 35.86 0.86
745 747 6.662755 AGAATGAAAGGTGAGCCACATATAA 58.337 36.000 7.49 0.00 35.86 0.98
746 748 7.118723 AGAATGAAAGGTGAGCCACATATAAA 58.881 34.615 7.49 0.00 35.86 1.40
747 749 7.615365 AGAATGAAAGGTGAGCCACATATAAAA 59.385 33.333 7.49 0.00 35.86 1.52
748 750 7.716799 ATGAAAGGTGAGCCACATATAAAAA 57.283 32.000 7.49 0.00 35.86 1.94
784 786 9.507329 ACTCTTTTGATCAACTATTGTACATGT 57.493 29.630 7.89 2.69 0.00 3.21
800 802 8.942338 TTGTACATGTTGACTATAAGATGGAC 57.058 34.615 2.30 4.56 42.47 4.02
801 803 8.306313 TGTACATGTTGACTATAAGATGGACT 57.694 34.615 2.30 0.00 42.56 3.85
802 804 8.197439 TGTACATGTTGACTATAAGATGGACTG 58.803 37.037 2.30 0.00 42.56 3.51
803 805 7.187824 ACATGTTGACTATAAGATGGACTGT 57.812 36.000 0.00 0.00 36.09 3.55
804 806 8.306313 ACATGTTGACTATAAGATGGACTGTA 57.694 34.615 0.00 0.00 36.09 2.74
805 807 8.417106 ACATGTTGACTATAAGATGGACTGTAG 58.583 37.037 0.00 0.00 36.09 2.74
806 808 8.633561 CATGTTGACTATAAGATGGACTGTAGA 58.366 37.037 0.00 0.00 30.21 2.59
807 809 8.768501 TGTTGACTATAAGATGGACTGTAGAT 57.231 34.615 0.00 0.00 0.00 1.98
808 810 8.633561 TGTTGACTATAAGATGGACTGTAGATG 58.366 37.037 0.00 0.00 0.00 2.90
809 811 8.851145 GTTGACTATAAGATGGACTGTAGATGA 58.149 37.037 0.00 0.00 0.00 2.92
810 812 8.397575 TGACTATAAGATGGACTGTAGATGAC 57.602 38.462 0.00 0.00 0.00 3.06
811 813 7.998964 TGACTATAAGATGGACTGTAGATGACA 59.001 37.037 0.00 0.00 36.35 3.58
812 814 8.948401 ACTATAAGATGGACTGTAGATGACAT 57.052 34.615 0.00 0.00 37.45 3.06
813 815 8.801299 ACTATAAGATGGACTGTAGATGACATG 58.199 37.037 0.00 0.00 37.45 3.21
814 816 7.846101 ATAAGATGGACTGTAGATGACATGA 57.154 36.000 0.00 0.00 37.45 3.07
815 817 5.528043 AGATGGACTGTAGATGACATGAC 57.472 43.478 0.00 0.00 37.45 3.06
816 818 4.958581 AGATGGACTGTAGATGACATGACA 59.041 41.667 0.00 0.00 37.45 3.58
817 819 5.601729 AGATGGACTGTAGATGACATGACAT 59.398 40.000 10.50 10.50 37.45 3.06
818 820 5.682234 TGGACTGTAGATGACATGACATT 57.318 39.130 11.92 5.38 37.45 2.71
819 821 5.422145 TGGACTGTAGATGACATGACATTG 58.578 41.667 11.92 4.05 37.45 2.82
820 822 5.187576 TGGACTGTAGATGACATGACATTGA 59.812 40.000 11.92 1.09 37.45 2.57
821 823 5.521735 GGACTGTAGATGACATGACATTGAC 59.478 44.000 11.92 12.53 37.45 3.18
822 824 6.291648 ACTGTAGATGACATGACATTGACT 57.708 37.500 11.92 7.45 37.45 3.41
823 825 6.705302 ACTGTAGATGACATGACATTGACTT 58.295 36.000 11.92 3.30 37.45 3.01
824 826 7.840931 ACTGTAGATGACATGACATTGACTTA 58.159 34.615 11.92 0.00 37.45 2.24
825 827 8.481314 ACTGTAGATGACATGACATTGACTTAT 58.519 33.333 11.92 2.07 37.45 1.73
826 828 9.971922 CTGTAGATGACATGACATTGACTTATA 57.028 33.333 11.92 0.00 37.45 0.98
827 829 9.971922 TGTAGATGACATGACATTGACTTATAG 57.028 33.333 11.92 0.00 31.20 1.31
828 830 7.959689 AGATGACATGACATTGACTTATAGC 57.040 36.000 11.92 0.00 0.00 2.97
829 831 6.933521 AGATGACATGACATTGACTTATAGCC 59.066 38.462 11.92 0.00 0.00 3.93
830 832 5.988287 TGACATGACATTGACTTATAGCCA 58.012 37.500 0.00 0.00 0.00 4.75
831 833 6.051074 TGACATGACATTGACTTATAGCCAG 58.949 40.000 0.00 0.00 0.00 4.85
832 834 4.818546 ACATGACATTGACTTATAGCCAGC 59.181 41.667 0.00 0.00 0.00 4.85
833 835 4.486125 TGACATTGACTTATAGCCAGCA 57.514 40.909 0.00 0.00 0.00 4.41
834 836 4.445453 TGACATTGACTTATAGCCAGCAG 58.555 43.478 0.00 0.00 0.00 4.24
835 837 3.209410 ACATTGACTTATAGCCAGCAGC 58.791 45.455 0.00 0.00 44.25 5.25
851 853 3.820777 GCAGCTGGCTATGCTATTAAC 57.179 47.619 17.12 0.00 38.92 2.01
852 854 2.485814 GCAGCTGGCTATGCTATTAACC 59.514 50.000 17.12 0.00 38.92 2.85
853 855 3.743521 CAGCTGGCTATGCTATTAACCA 58.256 45.455 5.57 0.00 38.92 3.67
854 856 4.330250 CAGCTGGCTATGCTATTAACCAT 58.670 43.478 5.57 0.00 38.92 3.55
855 857 4.155462 CAGCTGGCTATGCTATTAACCATG 59.845 45.833 5.57 0.00 38.92 3.66
856 858 3.119708 GCTGGCTATGCTATTAACCATGC 60.120 47.826 0.00 0.00 0.00 4.06
857 859 4.330250 CTGGCTATGCTATTAACCATGCT 58.670 43.478 0.00 0.00 0.00 3.79
858 860 4.326826 TGGCTATGCTATTAACCATGCTC 58.673 43.478 0.00 0.00 0.00 4.26
870 872 3.834489 ACCATGCTCTAAGGACATCAG 57.166 47.619 0.00 0.00 0.00 2.90
871 873 3.378512 ACCATGCTCTAAGGACATCAGA 58.621 45.455 0.00 0.00 0.00 3.27
874 876 3.510388 TGCTCTAAGGACATCAGAACG 57.490 47.619 0.00 0.00 0.00 3.95
891 893 2.712077 CGATTTTGCTTCGTGCCAC 58.288 52.632 1.30 0.00 42.00 5.01
892 894 0.040514 CGATTTTGCTTCGTGCCACA 60.041 50.000 0.00 0.00 42.00 4.17
893 895 1.408422 GATTTTGCTTCGTGCCACAC 58.592 50.000 0.00 0.00 42.00 3.82
1253 1255 2.185350 CCTGCACCTGCTAGACGG 59.815 66.667 0.00 0.00 42.66 4.79
1296 1298 0.469917 CCTGGAACACCGCCATATCT 59.530 55.000 0.00 0.00 34.33 1.98
1407 1409 3.749064 ATCGTCTCGCCGTGCTGT 61.749 61.111 0.00 0.00 0.00 4.40
1429 1431 1.067582 GTTGACCTAGGATCCGCGG 59.932 63.158 22.12 22.12 0.00 6.46
1569 1571 2.863809 TGTATGCCGCTGAGAGATCTA 58.136 47.619 0.00 0.00 0.00 1.98
1570 1572 2.816672 TGTATGCCGCTGAGAGATCTAG 59.183 50.000 0.00 0.00 0.00 2.43
1764 1766 9.871238 GTACACTCAGTTATTCTAAAATCTGGA 57.129 33.333 0.00 0.00 0.00 3.86
1793 1795 7.503566 TCTTAGGGATCTTTTCCTATGCAATTG 59.496 37.037 0.00 0.00 44.75 2.32
1842 1844 1.308998 ACGTTGACTTGGCCAAGAAG 58.691 50.000 44.50 30.38 40.79 2.85
1983 1985 1.630223 TGCTGCCCAATTCATTCACA 58.370 45.000 0.00 0.00 0.00 3.58
2076 2078 4.074970 CTGTCAAGCATGGGTTAGAACTT 58.925 43.478 0.00 0.00 0.00 2.66
2101 2103 5.429681 TCCTATAGTTGCCAGCTGTTTTA 57.570 39.130 13.81 0.00 0.00 1.52
2302 2304 4.642885 CCCCAAACTCAGTAACTTTTGTGA 59.357 41.667 0.00 0.00 0.00 3.58
2730 2732 3.359033 CTGGATTGATGTTGGTGGTCAT 58.641 45.455 0.00 0.00 0.00 3.06
2744 2746 4.518590 TGGTGGTCATGTACAATGTTTCAG 59.481 41.667 0.00 0.00 0.00 3.02
2751 2753 2.224426 TGTACAATGTTTCAGAGCGGGT 60.224 45.455 0.00 0.00 0.00 5.28
2767 2769 1.414181 CGGGTTCTAGTCCAGATGCAT 59.586 52.381 0.00 0.00 31.77 3.96
2778 2780 5.371526 AGTCCAGATGCATAATTCGAACAT 58.628 37.500 0.00 0.00 0.00 2.71
2947 2949 5.596772 AGTATGTGCTACTTGGGTTGTTTTT 59.403 36.000 0.00 0.00 37.39 1.94
2948 2950 4.116747 TGTGCTACTTGGGTTGTTTTTG 57.883 40.909 0.00 0.00 0.00 2.44
2949 2951 2.863740 GTGCTACTTGGGTTGTTTTTGC 59.136 45.455 0.00 0.00 0.00 3.68
2950 2952 2.497675 TGCTACTTGGGTTGTTTTTGCA 59.502 40.909 0.00 0.00 0.00 4.08
2951 2953 3.055819 TGCTACTTGGGTTGTTTTTGCAA 60.056 39.130 0.00 0.00 0.00 4.08
2972 2974 7.276658 TGCAAGACCGATTTGGATAGTATTTA 58.723 34.615 0.00 0.00 42.00 1.40
3014 3016 5.478233 TTTATGCAATGCAACCTACTACG 57.522 39.130 13.45 0.00 43.62 3.51
3029 3031 1.799403 ACTACGTCAGTCGACTCACAG 59.201 52.381 19.97 12.38 42.86 3.66
3041 3043 7.030165 CAGTCGACTCACAGTACTAAATCATT 58.970 38.462 16.96 0.00 0.00 2.57
3078 3080 5.781210 TTCATATTTGCTCAAACACCACA 57.219 34.783 0.00 0.00 32.51 4.17
3124 3127 6.314152 GCAGATCTAGGAACTCTTTGGTTTAC 59.686 42.308 0.00 0.00 41.75 2.01
3130 3133 5.919336 TAGGAACTCTTTGGTTTACGCCAAA 60.919 40.000 9.52 9.52 46.88 3.28
3181 3187 0.770499 TCCTTGTCATGGAACCAGCA 59.230 50.000 4.99 0.00 0.00 4.41
3229 3235 4.827284 CAGTGGTATTTCAGGTTTTCCAGT 59.173 41.667 0.00 0.00 43.73 4.00
3231 3237 4.825085 GTGGTATTTCAGGTTTTCCAGTGA 59.175 41.667 0.00 0.00 43.73 3.41
3241 3247 6.371548 TCAGGTTTTCCAGTGATATTCTTTCG 59.628 38.462 0.00 0.00 43.73 3.46
3277 3283 3.389329 CCCATCTACTACAAGGAGCATGT 59.611 47.826 0.00 0.00 34.81 3.21
3328 3334 2.340210 TCAGTCTCTCGGAGATCCTG 57.660 55.000 19.99 19.99 40.98 3.86
3358 3364 7.612633 GGGATATCGTAGGAAGAAAGATAGAGT 59.387 40.741 0.00 0.00 0.00 3.24
3367 3373 7.331791 AGGAAGAAAGATAGAGTACGCATTTT 58.668 34.615 0.00 0.00 0.00 1.82
3368 3374 7.278868 AGGAAGAAAGATAGAGTACGCATTTTG 59.721 37.037 0.00 0.00 0.00 2.44
3380 3386 0.040499 GCATTTTGGGTGGTAGGGGA 59.960 55.000 0.00 0.00 0.00 4.81
3483 3489 4.343814 ACAAACAAATCGAGGGACCATTTT 59.656 37.500 0.00 0.00 0.00 1.82
3505 3511 1.300697 GAAGTGTTCCGGACGCACT 60.301 57.895 26.43 26.43 44.31 4.40
3520 3526 1.673033 CGCACTGAGGAGGGTACTTTG 60.673 57.143 0.00 0.00 0.00 2.77
3528 3534 2.621526 AGGAGGGTACTTTGTTTTTGCG 59.378 45.455 0.00 0.00 0.00 4.85
3545 3551 2.091541 TGCGGGGAATTTAGAGCTTTG 58.908 47.619 0.00 0.00 0.00 2.77
3548 3554 3.692593 GCGGGGAATTTAGAGCTTTGTTA 59.307 43.478 0.00 0.00 0.00 2.41
3577 3583 6.488006 AGAATGCATTCACTGAGTTGTTAACT 59.512 34.615 34.59 10.82 40.90 2.24
3592 3598 9.425577 GAGTTGTTAACTAGAAGACTGCTAATT 57.574 33.333 7.22 0.00 43.03 1.40
3611 3617 5.966742 AATTAGGAAGCTTGGAGTTTCAC 57.033 39.130 2.10 0.00 37.20 3.18
3622 3628 2.289694 TGGAGTTTCACTAAGCCAGCTC 60.290 50.000 0.00 0.00 0.00 4.09
3689 3696 4.264253 TGGACCATTTGCTGATCTACTTG 58.736 43.478 0.00 0.00 0.00 3.16
3707 4389 7.919690 TCTACTTGCATGTTGAATTACATAGC 58.080 34.615 10.85 2.47 36.64 2.97
3733 4415 9.914834 CTAGTAAATCTAGTAGATAGCCCATCT 57.085 37.037 13.11 7.73 40.82 2.90
3734 4416 8.588290 AGTAAATCTAGTAGATAGCCCATCTG 57.412 38.462 13.11 0.00 44.10 2.90
3735 4417 5.930837 AATCTAGTAGATAGCCCATCTGC 57.069 43.478 13.11 7.17 44.10 4.26
3747 4429 4.864726 AGCCCATCTGCTTCTAAAAGAAT 58.135 39.130 0.00 0.00 38.85 2.40
3759 4441 2.611225 AAAAGAATTGGTGCCGCAAA 57.389 40.000 0.00 0.00 0.00 3.68
3764 4446 1.726248 GAATTGGTGCCGCAAATGAAC 59.274 47.619 0.00 0.00 0.00 3.18
3775 4457 2.310577 GCAAATGAACGACTGTTGAGC 58.689 47.619 1.15 0.00 38.78 4.26
3776 4458 2.031682 GCAAATGAACGACTGTTGAGCT 60.032 45.455 1.15 0.00 38.78 4.09
3778 4460 1.151668 ATGAACGACTGTTGAGCTGC 58.848 50.000 1.15 0.00 38.78 5.25
3795 4477 2.349532 GCTGCGTGTTTCAGAGGTTTAC 60.350 50.000 0.00 0.00 33.54 2.01
3813 4495 6.038997 GTTTACAACCTCCAGACTATCTGT 57.961 41.667 5.18 0.00 42.80 3.41
3814 4496 6.465084 GTTTACAACCTCCAGACTATCTGTT 58.535 40.000 5.18 0.00 42.80 3.16
3815 4497 7.609056 GTTTACAACCTCCAGACTATCTGTTA 58.391 38.462 5.18 0.00 42.80 2.41
3816 4498 5.662674 ACAACCTCCAGACTATCTGTTAC 57.337 43.478 5.18 0.00 42.80 2.50
3817 4499 5.084519 ACAACCTCCAGACTATCTGTTACA 58.915 41.667 5.18 0.00 42.80 2.41
3818 4500 5.542635 ACAACCTCCAGACTATCTGTTACAA 59.457 40.000 5.18 0.00 42.80 2.41
3819 4501 5.662674 ACCTCCAGACTATCTGTTACAAC 57.337 43.478 5.18 0.00 42.80 3.32
3820 4502 4.466726 ACCTCCAGACTATCTGTTACAACC 59.533 45.833 5.18 0.00 42.80 3.77
3821 4503 4.712337 CCTCCAGACTATCTGTTACAACCT 59.288 45.833 5.18 0.00 42.80 3.50
3822 4504 5.163499 CCTCCAGACTATCTGTTACAACCTC 60.163 48.000 5.18 0.00 42.80 3.85
3823 4505 4.710375 TCCAGACTATCTGTTACAACCTCC 59.290 45.833 5.18 0.00 42.80 4.30
3824 4506 4.466370 CCAGACTATCTGTTACAACCTCCA 59.534 45.833 5.18 0.00 42.80 3.86
3825 4507 5.394663 CCAGACTATCTGTTACAACCTCCAG 60.395 48.000 5.18 0.00 42.80 3.86
3826 4508 5.419155 CAGACTATCTGTTACAACCTCCAGA 59.581 44.000 0.00 0.00 39.58 3.86
3827 4509 5.419471 AGACTATCTGTTACAACCTCCAGAC 59.581 44.000 0.00 0.00 36.82 3.51
3828 4510 5.334421 ACTATCTGTTACAACCTCCAGACT 58.666 41.667 0.00 0.00 36.82 3.24
3829 4511 4.543590 ATCTGTTACAACCTCCAGACTG 57.456 45.455 0.00 0.00 36.82 3.51
3830 4512 3.305720 TCTGTTACAACCTCCAGACTGT 58.694 45.455 0.93 0.00 0.00 3.55
3831 4513 3.321111 TCTGTTACAACCTCCAGACTGTC 59.679 47.826 0.00 0.00 0.00 3.51
3861 4543 1.077285 CCACATGAGCATGCCCTCA 60.077 57.895 15.66 13.33 45.16 3.86
3874 4556 4.258543 CATGCCCTCAAAGATTTGCAAAT 58.741 39.130 24.33 24.33 38.05 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.183030 ACGGTCTTGGATCCACGACA 61.183 55.000 37.81 16.81 43.97 4.35
14 15 1.589630 CACGGTCTTGGATCCACGA 59.410 57.895 24.46 20.97 0.00 4.35
16 17 1.745489 GCCACGGTCTTGGATCCAC 60.745 63.158 15.91 2.61 39.24 4.02
94 96 0.108329 GTCACGGGATCAACGATGGT 60.108 55.000 14.79 0.00 34.93 3.55
98 100 0.179148 CATCGTCACGGGATCAACGA 60.179 55.000 14.79 1.58 46.73 3.85
102 104 0.172578 GACACATCGTCACGGGATCA 59.827 55.000 0.00 0.00 44.69 2.92
140 142 0.181114 CATCCCCATCTTGAAGCCGA 59.819 55.000 0.00 0.00 0.00 5.54
181 183 3.488569 GGCCATGGGATCCACCGA 61.489 66.667 15.13 0.00 35.80 4.69
241 243 2.430244 ACACATCGTCGCGTGGTC 60.430 61.111 5.77 0.00 37.45 4.02
245 247 1.805539 CATGGACACATCGTCGCGT 60.806 57.895 5.77 0.00 46.42 6.01
258 260 2.440065 GGGGCGTTCATGCATGGA 60.440 61.111 25.97 16.13 36.28 3.41
367 369 4.238669 CTCCCTCATTCTATCCCTCCTTT 58.761 47.826 0.00 0.00 0.00 3.11
379 381 1.414866 GCCCCTCTCCTCCCTCATTC 61.415 65.000 0.00 0.00 0.00 2.67
384 386 4.467107 GTCGCCCCTCTCCTCCCT 62.467 72.222 0.00 0.00 0.00 4.20
404 406 1.685820 CCTTCACTCCTTCCCCACC 59.314 63.158 0.00 0.00 0.00 4.61
413 415 1.305046 TCCGTCCTCCCTTCACTCC 60.305 63.158 0.00 0.00 0.00 3.85
419 421 4.698625 ACGCCTCCGTCCTCCCTT 62.699 66.667 0.00 0.00 46.39 3.95
442 444 5.368989 CCCACTACTCTGTCTTCACTTTTT 58.631 41.667 0.00 0.00 0.00 1.94
467 469 2.265904 GCCCAAACGAACCCAGACC 61.266 63.158 0.00 0.00 0.00 3.85
469 471 2.281208 CGCCCAAACGAACCCAGA 60.281 61.111 0.00 0.00 34.06 3.86
477 479 1.720694 AAAGGTGTGTCGCCCAAACG 61.721 55.000 0.00 0.00 33.99 3.60
481 483 1.525077 GTCAAAGGTGTGTCGCCCA 60.525 57.895 0.00 0.00 33.99 5.36
485 487 0.531090 TTCGGGTCAAAGGTGTGTCG 60.531 55.000 0.00 0.00 0.00 4.35
496 498 0.809385 CTAGAAGCTCGTTCGGGTCA 59.191 55.000 0.00 0.00 40.49 4.02
528 530 0.670546 CATCACAACGCTCCCGACTT 60.671 55.000 0.00 0.00 38.29 3.01
541 543 5.771153 ATGATTGAAACACACACATCACA 57.229 34.783 0.00 0.00 0.00 3.58
548 550 2.158645 CGCCGTATGATTGAAACACACA 59.841 45.455 0.00 0.00 0.00 3.72
550 552 2.689646 TCGCCGTATGATTGAAACACA 58.310 42.857 0.00 0.00 0.00 3.72
551 553 3.944422 ATCGCCGTATGATTGAAACAC 57.056 42.857 0.00 0.00 0.00 3.32
552 554 5.353111 TCTTATCGCCGTATGATTGAAACA 58.647 37.500 0.00 0.00 0.00 2.83
568 570 6.362016 CAGCTCTATTGTACTTGCTCTTATCG 59.638 42.308 0.00 0.00 0.00 2.92
570 572 7.069331 ACTCAGCTCTATTGTACTTGCTCTTAT 59.931 37.037 0.00 0.00 0.00 1.73
571 573 6.378564 ACTCAGCTCTATTGTACTTGCTCTTA 59.621 38.462 0.00 0.00 0.00 2.10
572 574 5.186797 ACTCAGCTCTATTGTACTTGCTCTT 59.813 40.000 0.00 0.00 0.00 2.85
573 575 4.709397 ACTCAGCTCTATTGTACTTGCTCT 59.291 41.667 0.00 0.00 0.00 4.09
574 576 5.004922 ACTCAGCTCTATTGTACTTGCTC 57.995 43.478 0.00 0.00 0.00 4.26
575 577 4.464244 TGACTCAGCTCTATTGTACTTGCT 59.536 41.667 0.00 0.00 0.00 3.91
576 578 4.748892 TGACTCAGCTCTATTGTACTTGC 58.251 43.478 0.00 0.00 0.00 4.01
591 593 2.961741 TCCTTATAGCCTGCTGACTCAG 59.038 50.000 0.97 1.21 34.12 3.35
592 594 3.032265 TCCTTATAGCCTGCTGACTCA 57.968 47.619 0.97 0.00 0.00 3.41
593 595 4.615588 ATTCCTTATAGCCTGCTGACTC 57.384 45.455 0.97 0.00 0.00 3.36
594 596 6.100424 AGTTTATTCCTTATAGCCTGCTGACT 59.900 38.462 0.97 0.00 0.00 3.41
595 597 6.292150 AGTTTATTCCTTATAGCCTGCTGAC 58.708 40.000 0.97 0.00 0.00 3.51
596 598 6.500589 AGTTTATTCCTTATAGCCTGCTGA 57.499 37.500 0.97 0.00 0.00 4.26
597 599 7.445945 ACTAGTTTATTCCTTATAGCCTGCTG 58.554 38.462 0.97 0.00 0.00 4.41
598 600 7.619512 ACTAGTTTATTCCTTATAGCCTGCT 57.380 36.000 0.00 0.00 0.00 4.24
626 628 9.765795 CTTCTCTTTCTTCCAACTAAGTAGAAA 57.234 33.333 0.00 0.00 34.64 2.52
627 629 9.144298 TCTTCTCTTTCTTCCAACTAAGTAGAA 57.856 33.333 0.00 0.00 0.00 2.10
628 630 8.707796 TCTTCTCTTTCTTCCAACTAAGTAGA 57.292 34.615 0.00 0.00 0.00 2.59
629 631 8.032451 CCTCTTCTCTTTCTTCCAACTAAGTAG 58.968 40.741 0.00 0.00 0.00 2.57
630 632 7.728981 TCCTCTTCTCTTTCTTCCAACTAAGTA 59.271 37.037 0.00 0.00 0.00 2.24
631 633 6.555360 TCCTCTTCTCTTTCTTCCAACTAAGT 59.445 38.462 0.00 0.00 0.00 2.24
632 634 6.998802 TCCTCTTCTCTTTCTTCCAACTAAG 58.001 40.000 0.00 0.00 0.00 2.18
633 635 6.782988 TCTCCTCTTCTCTTTCTTCCAACTAA 59.217 38.462 0.00 0.00 0.00 2.24
634 636 6.315714 TCTCCTCTTCTCTTTCTTCCAACTA 58.684 40.000 0.00 0.00 0.00 2.24
635 637 5.151454 TCTCCTCTTCTCTTTCTTCCAACT 58.849 41.667 0.00 0.00 0.00 3.16
636 638 5.245075 TCTCTCCTCTTCTCTTTCTTCCAAC 59.755 44.000 0.00 0.00 0.00 3.77
637 639 5.398236 TCTCTCCTCTTCTCTTTCTTCCAA 58.602 41.667 0.00 0.00 0.00 3.53
638 640 5.004361 TCTCTCCTCTTCTCTTTCTTCCA 57.996 43.478 0.00 0.00 0.00 3.53
639 641 5.261216 TCTCTCTCCTCTTCTCTTTCTTCC 58.739 45.833 0.00 0.00 0.00 3.46
640 642 6.127619 CCTTCTCTCTCCTCTTCTCTTTCTTC 60.128 46.154 0.00 0.00 0.00 2.87
641 643 5.716703 CCTTCTCTCTCCTCTTCTCTTTCTT 59.283 44.000 0.00 0.00 0.00 2.52
642 644 5.222337 ACCTTCTCTCTCCTCTTCTCTTTCT 60.222 44.000 0.00 0.00 0.00 2.52
643 645 5.016831 ACCTTCTCTCTCCTCTTCTCTTTC 58.983 45.833 0.00 0.00 0.00 2.62
644 646 5.010708 ACCTTCTCTCTCCTCTTCTCTTT 57.989 43.478 0.00 0.00 0.00 2.52
645 647 4.675063 ACCTTCTCTCTCCTCTTCTCTT 57.325 45.455 0.00 0.00 0.00 2.85
646 648 5.755849 CTTACCTTCTCTCTCCTCTTCTCT 58.244 45.833 0.00 0.00 0.00 3.10
647 649 4.338400 GCTTACCTTCTCTCTCCTCTTCTC 59.662 50.000 0.00 0.00 0.00 2.87
648 650 4.278310 GCTTACCTTCTCTCTCCTCTTCT 58.722 47.826 0.00 0.00 0.00 2.85
649 651 3.066203 CGCTTACCTTCTCTCTCCTCTTC 59.934 52.174 0.00 0.00 0.00 2.87
650 652 3.020984 CGCTTACCTTCTCTCTCCTCTT 58.979 50.000 0.00 0.00 0.00 2.85
651 653 2.650322 CGCTTACCTTCTCTCTCCTCT 58.350 52.381 0.00 0.00 0.00 3.69
652 654 1.679153 CCGCTTACCTTCTCTCTCCTC 59.321 57.143 0.00 0.00 0.00 3.71
653 655 1.686741 CCCGCTTACCTTCTCTCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
654 656 0.747852 CCCGCTTACCTTCTCTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
655 657 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
656 658 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
657 659 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
658 660 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
659 661 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
660 662 0.537653 GAAGAGCCCGCTTACCTTCT 59.462 55.000 8.59 0.00 32.72 2.85
661 663 0.806492 CGAAGAGCCCGCTTACCTTC 60.806 60.000 6.57 6.57 0.00 3.46
662 664 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
663 665 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
664 666 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
665 667 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
666 668 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.000 0.20 0.00 40.79 3.09
667 669 1.374758 CTTCACGAAGAGCCCGCTT 60.375 57.895 0.20 0.00 40.79 4.68
668 670 2.262915 CTTCACGAAGAGCCCGCT 59.737 61.111 0.20 0.00 40.79 5.52
669 671 2.261671 TCTTCACGAAGAGCCCGC 59.738 61.111 5.38 0.00 42.06 6.13
675 677 0.244994 GAGCTGGCTCTTCACGAAGA 59.755 55.000 14.51 9.08 44.47 2.87
676 678 2.748268 GAGCTGGCTCTTCACGAAG 58.252 57.895 14.51 0.08 39.80 3.79
677 679 4.996976 GAGCTGGCTCTTCACGAA 57.003 55.556 14.51 0.00 39.80 3.85
685 687 1.518133 CACGTGCTAGAGCTGGCTC 60.518 63.158 14.02 14.02 42.66 4.70
686 688 2.575993 CACGTGCTAGAGCTGGCT 59.424 61.111 0.82 0.00 42.66 4.75
687 689 3.191539 GCACGTGCTAGAGCTGGC 61.192 66.667 32.55 1.87 42.66 4.85
702 704 3.374764 TCTCATAAAGTGCCTAGGAGCA 58.625 45.455 14.75 0.22 41.46 4.26
703 705 4.408182 TTCTCATAAAGTGCCTAGGAGC 57.592 45.455 14.75 3.68 29.37 4.70
704 706 6.166984 TCATTCTCATAAAGTGCCTAGGAG 57.833 41.667 14.75 0.00 0.00 3.69
705 707 6.560003 TTCATTCTCATAAAGTGCCTAGGA 57.440 37.500 14.75 0.00 0.00 2.94
706 708 6.261826 CCTTTCATTCTCATAAAGTGCCTAGG 59.738 42.308 3.67 3.67 0.00 3.02
707 709 6.825721 ACCTTTCATTCTCATAAAGTGCCTAG 59.174 38.462 0.00 0.00 0.00 3.02
708 710 6.599244 CACCTTTCATTCTCATAAAGTGCCTA 59.401 38.462 0.00 0.00 0.00 3.93
709 711 5.416952 CACCTTTCATTCTCATAAAGTGCCT 59.583 40.000 0.00 0.00 0.00 4.75
710 712 5.415701 TCACCTTTCATTCTCATAAAGTGCC 59.584 40.000 0.00 0.00 0.00 5.01
711 713 6.500684 TCACCTTTCATTCTCATAAAGTGC 57.499 37.500 0.00 0.00 0.00 4.40
712 714 6.404074 GGCTCACCTTTCATTCTCATAAAGTG 60.404 42.308 0.00 0.00 0.00 3.16
713 715 5.649831 GGCTCACCTTTCATTCTCATAAAGT 59.350 40.000 0.00 0.00 0.00 2.66
714 716 5.649395 TGGCTCACCTTTCATTCTCATAAAG 59.351 40.000 0.00 0.00 36.63 1.85
715 717 5.415701 GTGGCTCACCTTTCATTCTCATAAA 59.584 40.000 0.00 0.00 36.63 1.40
716 718 4.943705 GTGGCTCACCTTTCATTCTCATAA 59.056 41.667 0.00 0.00 36.63 1.90
717 719 4.019411 TGTGGCTCACCTTTCATTCTCATA 60.019 41.667 3.33 0.00 36.63 2.15
718 720 3.245016 TGTGGCTCACCTTTCATTCTCAT 60.245 43.478 3.33 0.00 36.63 2.90
719 721 2.106338 TGTGGCTCACCTTTCATTCTCA 59.894 45.455 3.33 0.00 36.63 3.27
720 722 2.783135 TGTGGCTCACCTTTCATTCTC 58.217 47.619 3.33 0.00 36.63 2.87
721 723 2.957402 TGTGGCTCACCTTTCATTCT 57.043 45.000 3.33 0.00 36.63 2.40
722 724 6.942532 TTATATGTGGCTCACCTTTCATTC 57.057 37.500 0.00 0.00 36.63 2.67
723 725 7.716799 TTTTATATGTGGCTCACCTTTCATT 57.283 32.000 0.00 0.00 36.63 2.57
724 726 7.716799 TTTTTATATGTGGCTCACCTTTCAT 57.283 32.000 0.00 0.00 36.63 2.57
758 760 9.507329 ACATGTACAATAGTTGATCAAAAGAGT 57.493 29.630 10.35 8.17 0.00 3.24
774 776 9.547753 GTCCATCTTATAGTCAACATGTACAAT 57.452 33.333 0.00 0.00 0.00 2.71
775 777 8.758829 AGTCCATCTTATAGTCAACATGTACAA 58.241 33.333 0.00 0.00 0.00 2.41
776 778 8.197439 CAGTCCATCTTATAGTCAACATGTACA 58.803 37.037 0.00 0.00 0.00 2.90
777 779 8.198109 ACAGTCCATCTTATAGTCAACATGTAC 58.802 37.037 0.00 0.00 0.00 2.90
778 780 8.306313 ACAGTCCATCTTATAGTCAACATGTA 57.694 34.615 0.00 0.00 0.00 2.29
779 781 7.187824 ACAGTCCATCTTATAGTCAACATGT 57.812 36.000 0.00 0.00 0.00 3.21
780 782 8.633561 TCTACAGTCCATCTTATAGTCAACATG 58.366 37.037 0.00 0.00 0.00 3.21
781 783 8.768501 TCTACAGTCCATCTTATAGTCAACAT 57.231 34.615 0.00 0.00 0.00 2.71
782 784 8.633561 CATCTACAGTCCATCTTATAGTCAACA 58.366 37.037 0.00 0.00 0.00 3.33
783 785 8.851145 TCATCTACAGTCCATCTTATAGTCAAC 58.149 37.037 0.00 0.00 0.00 3.18
784 786 8.851145 GTCATCTACAGTCCATCTTATAGTCAA 58.149 37.037 0.00 0.00 0.00 3.18
785 787 7.998964 TGTCATCTACAGTCCATCTTATAGTCA 59.001 37.037 0.00 0.00 33.01 3.41
786 788 8.397575 TGTCATCTACAGTCCATCTTATAGTC 57.602 38.462 0.00 0.00 33.01 2.59
787 789 8.801299 CATGTCATCTACAGTCCATCTTATAGT 58.199 37.037 0.00 0.00 42.70 2.12
788 790 9.018582 TCATGTCATCTACAGTCCATCTTATAG 57.981 37.037 0.00 0.00 42.70 1.31
789 791 8.797438 GTCATGTCATCTACAGTCCATCTTATA 58.203 37.037 0.00 0.00 42.70 0.98
790 792 7.288621 TGTCATGTCATCTACAGTCCATCTTAT 59.711 37.037 0.00 0.00 42.70 1.73
791 793 6.607198 TGTCATGTCATCTACAGTCCATCTTA 59.393 38.462 0.00 0.00 42.70 2.10
792 794 5.423290 TGTCATGTCATCTACAGTCCATCTT 59.577 40.000 0.00 0.00 42.70 2.40
793 795 4.958581 TGTCATGTCATCTACAGTCCATCT 59.041 41.667 0.00 0.00 42.70 2.90
794 796 5.268118 TGTCATGTCATCTACAGTCCATC 57.732 43.478 0.00 0.00 42.70 3.51
795 797 5.883685 ATGTCATGTCATCTACAGTCCAT 57.116 39.130 0.00 0.00 42.70 3.41
796 798 5.187576 TCAATGTCATGTCATCTACAGTCCA 59.812 40.000 5.90 0.00 42.70 4.02
797 799 5.521735 GTCAATGTCATGTCATCTACAGTCC 59.478 44.000 5.90 0.00 42.70 3.85
798 800 6.336566 AGTCAATGTCATGTCATCTACAGTC 58.663 40.000 5.90 0.00 42.70 3.51
799 801 6.291648 AGTCAATGTCATGTCATCTACAGT 57.708 37.500 5.90 0.00 42.70 3.55
800 802 8.883954 ATAAGTCAATGTCATGTCATCTACAG 57.116 34.615 5.90 0.00 42.70 2.74
801 803 9.971922 CTATAAGTCAATGTCATGTCATCTACA 57.028 33.333 5.90 0.00 43.86 2.74
802 804 8.920665 GCTATAAGTCAATGTCATGTCATCTAC 58.079 37.037 5.90 7.49 0.00 2.59
803 805 8.090831 GGCTATAAGTCAATGTCATGTCATCTA 58.909 37.037 5.90 0.00 0.00 1.98
804 806 6.933521 GGCTATAAGTCAATGTCATGTCATCT 59.066 38.462 5.90 0.00 0.00 2.90
805 807 6.707608 TGGCTATAAGTCAATGTCATGTCATC 59.292 38.462 5.90 0.00 0.00 2.92
806 808 6.594744 TGGCTATAAGTCAATGTCATGTCAT 58.405 36.000 0.00 0.00 0.00 3.06
807 809 5.988287 TGGCTATAAGTCAATGTCATGTCA 58.012 37.500 0.00 0.00 0.00 3.58
808 810 5.049818 GCTGGCTATAAGTCAATGTCATGTC 60.050 44.000 0.00 0.00 0.00 3.06
809 811 4.818546 GCTGGCTATAAGTCAATGTCATGT 59.181 41.667 0.00 0.00 0.00 3.21
810 812 4.818005 TGCTGGCTATAAGTCAATGTCATG 59.182 41.667 0.00 0.00 0.00 3.07
811 813 5.039920 TGCTGGCTATAAGTCAATGTCAT 57.960 39.130 0.00 0.00 0.00 3.06
812 814 4.445453 CTGCTGGCTATAAGTCAATGTCA 58.555 43.478 0.00 0.00 0.00 3.58
813 815 3.249559 GCTGCTGGCTATAAGTCAATGTC 59.750 47.826 0.00 0.00 38.06 3.06
814 816 3.209410 GCTGCTGGCTATAAGTCAATGT 58.791 45.455 0.00 0.00 38.06 2.71
815 817 3.892918 GCTGCTGGCTATAAGTCAATG 57.107 47.619 0.00 0.00 38.06 2.82
831 833 2.485814 GGTTAATAGCATAGCCAGCTGC 59.514 50.000 8.66 3.91 43.33 5.25
832 834 3.743521 TGGTTAATAGCATAGCCAGCTG 58.256 45.455 6.78 6.78 43.33 4.24
833 835 4.330250 CATGGTTAATAGCATAGCCAGCT 58.670 43.478 0.00 0.00 40.37 4.24
834 836 3.119708 GCATGGTTAATAGCATAGCCAGC 60.120 47.826 0.00 6.11 40.37 4.85
835 837 4.330250 AGCATGGTTAATAGCATAGCCAG 58.670 43.478 0.00 1.51 40.37 4.85
836 838 4.042062 AGAGCATGGTTAATAGCATAGCCA 59.958 41.667 0.00 3.04 40.37 4.75
837 839 4.583871 AGAGCATGGTTAATAGCATAGCC 58.416 43.478 0.00 0.00 40.37 3.93
838 840 6.314896 CCTTAGAGCATGGTTAATAGCATAGC 59.685 42.308 0.00 0.00 40.37 2.97
839 841 7.547370 GTCCTTAGAGCATGGTTAATAGCATAG 59.453 40.741 0.00 0.00 40.37 2.23
840 842 7.016170 TGTCCTTAGAGCATGGTTAATAGCATA 59.984 37.037 0.00 0.00 40.37 3.14
841 843 6.183361 TGTCCTTAGAGCATGGTTAATAGCAT 60.183 38.462 0.00 0.00 42.99 3.79
842 844 5.130311 TGTCCTTAGAGCATGGTTAATAGCA 59.870 40.000 0.00 0.00 36.00 3.49
843 845 5.611374 TGTCCTTAGAGCATGGTTAATAGC 58.389 41.667 0.00 0.00 0.00 2.97
844 846 7.445121 TGATGTCCTTAGAGCATGGTTAATAG 58.555 38.462 0.00 0.00 0.00 1.73
845 847 7.290014 TCTGATGTCCTTAGAGCATGGTTAATA 59.710 37.037 0.00 0.00 0.00 0.98
846 848 6.100279 TCTGATGTCCTTAGAGCATGGTTAAT 59.900 38.462 0.00 0.00 0.00 1.40
847 849 5.425217 TCTGATGTCCTTAGAGCATGGTTAA 59.575 40.000 0.00 0.00 0.00 2.01
848 850 4.962362 TCTGATGTCCTTAGAGCATGGTTA 59.038 41.667 0.00 0.00 0.00 2.85
849 851 3.776969 TCTGATGTCCTTAGAGCATGGTT 59.223 43.478 0.00 0.00 0.00 3.67
850 852 3.378512 TCTGATGTCCTTAGAGCATGGT 58.621 45.455 0.00 0.00 0.00 3.55
851 853 4.125703 GTTCTGATGTCCTTAGAGCATGG 58.874 47.826 0.00 0.00 0.00 3.66
852 854 3.801050 CGTTCTGATGTCCTTAGAGCATG 59.199 47.826 0.00 0.00 0.00 4.06
853 855 3.701542 TCGTTCTGATGTCCTTAGAGCAT 59.298 43.478 0.00 0.00 0.00 3.79
854 856 3.089284 TCGTTCTGATGTCCTTAGAGCA 58.911 45.455 0.00 0.00 0.00 4.26
855 857 3.784701 TCGTTCTGATGTCCTTAGAGC 57.215 47.619 0.00 0.00 0.00 4.09
856 858 6.456181 GCAAAATCGTTCTGATGTCCTTAGAG 60.456 42.308 0.00 0.00 37.39 2.43
857 859 5.351465 GCAAAATCGTTCTGATGTCCTTAGA 59.649 40.000 0.00 0.00 37.39 2.10
858 860 5.352569 AGCAAAATCGTTCTGATGTCCTTAG 59.647 40.000 0.00 0.00 37.39 2.18
887 889 6.047231 ACCTAGAAAATCTAATACGTGTGGC 58.953 40.000 0.00 0.00 0.00 5.01
888 890 9.590451 TTAACCTAGAAAATCTAATACGTGTGG 57.410 33.333 0.00 0.00 0.00 4.17
927 929 6.037172 CGAGGAGGTTTTACGAATTTGATCAT 59.963 38.462 0.00 0.00 0.00 2.45
938 940 3.527434 AAGCCGAGGAGGTTTTACG 57.473 52.632 0.00 0.00 40.82 3.18
1138 1140 0.179000 GGCATGAGGTCCAGTAGGTG 59.821 60.000 0.00 0.00 35.89 4.00
1377 1379 2.159612 CGAGACGATGGAGTACGTGAAA 60.160 50.000 0.00 0.00 42.74 2.69
1383 1385 1.009900 CGGCGAGACGATGGAGTAC 60.010 63.158 0.00 0.00 35.47 2.73
1407 1409 1.672854 CGGATCCTAGGTCAACGCCA 61.673 60.000 10.75 0.00 0.00 5.69
1569 1571 1.632409 AGGAGCACATTCCATGACACT 59.368 47.619 0.00 0.00 39.84 3.55
1570 1572 1.741706 CAGGAGCACATTCCATGACAC 59.258 52.381 0.00 0.00 39.84 3.67
1611 1613 3.744942 CCTTCATACATGATCCTGCTTCG 59.255 47.826 0.00 0.00 36.56 3.79
1623 1625 7.497249 GTCATGCTAAGAAACTCCTTCATACAT 59.503 37.037 0.00 0.00 36.40 2.29
1725 1727 0.987294 AGTGTACCTGCATTGCCTCT 59.013 50.000 6.12 0.00 0.00 3.69
1793 1795 1.562575 CCCGTACACGTCCAGCAAAC 61.563 60.000 0.58 0.00 37.74 2.93
1842 1844 3.376234 TCTCAAGCATAGCATCAAACAGC 59.624 43.478 0.00 0.00 0.00 4.40
1977 1979 5.300286 GCTTACTATGCTCCCAAATGTGAAT 59.700 40.000 0.00 0.00 0.00 2.57
2076 2078 2.571653 ACAGCTGGCAACTATAGGAACA 59.428 45.455 19.93 0.00 37.61 3.18
2101 2103 3.736252 GCGCACTTTGAGTACATATCGAT 59.264 43.478 0.30 2.16 0.00 3.59
2302 2304 2.435586 GCATGCGCTCAGGACACT 60.436 61.111 9.73 0.00 34.30 3.55
2332 2334 2.435437 AGCTGCAACCTTTTTGGACATT 59.565 40.909 1.02 0.00 39.71 2.71
2730 2732 2.224426 ACCCGCTCTGAAACATTGTACA 60.224 45.455 0.00 0.00 0.00 2.90
2744 2746 1.067821 CATCTGGACTAGAACCCGCTC 59.932 57.143 0.00 0.00 39.30 5.03
2751 2753 6.405278 TCGAATTATGCATCTGGACTAGAA 57.595 37.500 0.19 0.00 39.30 2.10
2778 2780 9.612066 TGAAGTTGTTGCAGAACATCATATATA 57.388 29.630 12.14 0.00 41.77 0.86
2932 2934 4.382147 GGTCTTGCAAAAACAACCCAAGTA 60.382 41.667 0.00 0.00 35.58 2.24
2947 2949 3.627395 ACTATCCAAATCGGTCTTGCA 57.373 42.857 0.00 0.00 35.57 4.08
2948 2950 6.619801 AAATACTATCCAAATCGGTCTTGC 57.380 37.500 0.00 0.00 35.57 4.01
2951 2953 9.601217 GCATATAAATACTATCCAAATCGGTCT 57.399 33.333 0.00 0.00 35.57 3.85
2972 2974 8.936864 GCATAAATAACTAACCTTCTCGCATAT 58.063 33.333 0.00 0.00 0.00 1.78
2992 2994 4.938832 ACGTAGTAGGTTGCATTGCATAAA 59.061 37.500 12.95 0.00 41.94 1.40
3014 3016 5.354054 TTTAGTACTGTGAGTCGACTGAC 57.646 43.478 25.81 25.81 45.86 3.51
3041 3043 8.533657 AGCAAATATGAATGATTTCAGGAACAA 58.466 29.630 0.00 0.00 44.75 2.83
3105 3107 3.683340 GGCGTAAACCAAAGAGTTCCTAG 59.317 47.826 0.00 0.00 0.00 3.02
3138 3141 9.939802 GGAACTTAACCATCTAAAAGAAGAGTA 57.060 33.333 0.00 0.00 0.00 2.59
3179 3185 1.267806 CACATCTGAACCCAAGTGTGC 59.732 52.381 0.00 0.00 33.78 4.57
3181 3187 1.609208 GCACATCTGAACCCAAGTGT 58.391 50.000 0.00 0.00 0.00 3.55
3218 3224 5.648092 CCGAAAGAATATCACTGGAAAACCT 59.352 40.000 0.00 0.00 0.00 3.50
3229 3235 6.705825 CACATCATACCACCGAAAGAATATCA 59.294 38.462 0.00 0.00 0.00 2.15
3231 3237 5.470098 GCACATCATACCACCGAAAGAATAT 59.530 40.000 0.00 0.00 0.00 1.28
3241 3247 3.827505 ATGGGCACATCATACCACC 57.172 52.632 0.00 0.00 35.52 4.61
3328 3334 5.480772 TCTTTCTTCCTACGATATCCCCATC 59.519 44.000 0.00 0.00 0.00 3.51
3358 3364 1.340211 CCCTACCACCCAAAATGCGTA 60.340 52.381 0.00 0.00 0.00 4.42
3360 3366 1.319614 CCCCTACCACCCAAAATGCG 61.320 60.000 0.00 0.00 0.00 4.73
3367 3373 2.251605 TCATTCTATCCCCTACCACCCA 59.748 50.000 0.00 0.00 0.00 4.51
3368 3374 2.986050 TCATTCTATCCCCTACCACCC 58.014 52.381 0.00 0.00 0.00 4.61
3483 3489 1.300620 CGTCCGGAACACTTCTGCA 60.301 57.895 5.23 0.00 34.66 4.41
3505 3511 3.634910 GCAAAAACAAAGTACCCTCCTCA 59.365 43.478 0.00 0.00 0.00 3.86
3520 3526 3.056821 AGCTCTAAATTCCCCGCAAAAAC 60.057 43.478 0.00 0.00 0.00 2.43
3528 3534 8.364894 TCTTTTTAACAAAGCTCTAAATTCCCC 58.635 33.333 0.00 0.00 0.00 4.81
3545 3551 8.482429 CAACTCAGTGAATGCATTCTTTTTAAC 58.518 33.333 33.23 23.51 37.67 2.01
3548 3554 6.576185 ACAACTCAGTGAATGCATTCTTTTT 58.424 32.000 33.23 17.78 37.67 1.94
3577 3583 7.268586 CAAGCTTCCTAATTAGCAGTCTTCTA 58.731 38.462 6.99 0.00 39.85 2.10
3611 3617 0.179124 GTCACCGAGAGCTGGCTTAG 60.179 60.000 0.00 0.00 0.00 2.18
3622 3628 3.991051 ACCGTGCCTGTCACCGAG 61.991 66.667 0.00 0.00 42.69 4.63
3707 4389 9.914834 AGATGGGCTATCTACTAGATTTACTAG 57.085 37.037 12.09 0.00 44.32 2.57
3728 4410 6.327934 CACCAATTCTTTTAGAAGCAGATGG 58.672 40.000 0.00 0.00 37.69 3.51
3733 4415 3.057596 CGGCACCAATTCTTTTAGAAGCA 60.058 43.478 0.00 0.00 37.69 3.91
3734 4416 3.501950 CGGCACCAATTCTTTTAGAAGC 58.498 45.455 0.00 0.00 37.69 3.86
3735 4417 3.057596 TGCGGCACCAATTCTTTTAGAAG 60.058 43.478 0.00 0.00 37.69 2.85
3747 4429 1.007964 CGTTCATTTGCGGCACCAA 60.008 52.632 0.05 0.00 0.00 3.67
3759 4441 1.151668 GCAGCTCAACAGTCGTTCAT 58.848 50.000 0.00 0.00 31.13 2.57
3764 4446 1.490693 AACACGCAGCTCAACAGTCG 61.491 55.000 0.00 0.00 0.00 4.18
3775 4457 2.869801 TGTAAACCTCTGAAACACGCAG 59.130 45.455 0.00 0.00 34.71 5.18
3776 4458 2.907634 TGTAAACCTCTGAAACACGCA 58.092 42.857 0.00 0.00 0.00 5.24
3811 4493 2.035449 CGACAGTCTGGAGGTTGTAACA 59.965 50.000 4.53 0.00 0.00 2.41
3812 4494 2.609737 CCGACAGTCTGGAGGTTGTAAC 60.610 54.545 4.53 0.00 0.00 2.50
3813 4495 1.616865 CCGACAGTCTGGAGGTTGTAA 59.383 52.381 4.53 0.00 0.00 2.41
3814 4496 1.254026 CCGACAGTCTGGAGGTTGTA 58.746 55.000 4.53 0.00 0.00 2.41
3815 4497 0.759436 ACCGACAGTCTGGAGGTTGT 60.759 55.000 15.69 0.00 29.29 3.32
3816 4498 0.038159 GACCGACAGTCTGGAGGTTG 60.038 60.000 18.63 0.00 42.69 3.77
3817 4499 2.352817 GACCGACAGTCTGGAGGTT 58.647 57.895 18.63 6.75 42.69 3.50
3818 4500 4.098847 GACCGACAGTCTGGAGGT 57.901 61.111 17.93 17.93 42.69 3.85
3825 4507 1.816835 TGGTGATGTAGACCGACAGTC 59.183 52.381 0.00 0.00 46.71 3.51
3826 4508 1.544691 GTGGTGATGTAGACCGACAGT 59.455 52.381 0.00 0.00 36.12 3.55
3827 4509 1.544246 TGTGGTGATGTAGACCGACAG 59.456 52.381 0.00 0.00 36.12 3.51
3828 4510 1.623163 TGTGGTGATGTAGACCGACA 58.377 50.000 0.00 0.00 36.12 4.35
3829 4511 2.165641 TCATGTGGTGATGTAGACCGAC 59.834 50.000 0.00 0.00 36.12 4.79
3830 4512 2.427095 CTCATGTGGTGATGTAGACCGA 59.573 50.000 0.00 0.00 35.97 4.69
3831 4513 2.814269 CTCATGTGGTGATGTAGACCG 58.186 52.381 0.00 0.00 35.97 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.