Multiple sequence alignment - TraesCS4B01G132600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G132600 chr4B 100.000 4556 0 0 1 4556 172507588 172503033 0.000000e+00 8414.0
1 TraesCS4B01G132600 chr4B 93.023 43 2 1 4355 4397 639455492 639455533 1.370000e-05 62.1
2 TraesCS4B01G132600 chr4D 91.562 3117 118 37 1 3003 111939822 111936737 0.000000e+00 4165.0
3 TraesCS4B01G132600 chr4D 87.054 1205 73 35 3153 4323 111936633 111935478 0.000000e+00 1284.0
4 TraesCS4B01G132600 chr4D 96.703 91 2 1 3070 3160 225215609 225215520 2.840000e-32 150.0
5 TraesCS4B01G132600 chr4D 96.104 77 1 2 2996 3072 111936705 111936631 1.720000e-24 124.0
6 TraesCS4B01G132600 chr4A 93.289 1490 69 7 1518 2978 465409349 465410836 0.000000e+00 2169.0
7 TraesCS4B01G132600 chr4A 85.453 1588 79 45 1 1468 465407783 465409338 0.000000e+00 1513.0
8 TraesCS4B01G132600 chr4A 88.567 1172 74 27 3182 4321 465411017 465412160 0.000000e+00 1367.0
9 TraesCS4B01G132600 chr4A 96.970 66 2 0 3007 3072 465410934 465410999 1.340000e-20 111.0
10 TraesCS4B01G132600 chr2B 98.824 85 1 0 3070 3154 395207384 395207468 7.890000e-33 152.0
11 TraesCS4B01G132600 chr2B 95.652 92 3 1 3069 3160 662898921 662899011 3.670000e-31 147.0
12 TraesCS4B01G132600 chr6D 95.652 92 4 0 3070 3161 95294905 95294996 1.020000e-31 148.0
13 TraesCS4B01G132600 chr6D 95.556 90 4 0 3069 3158 90224297 90224386 1.320000e-30 145.0
14 TraesCS4B01G132600 chr2D 93.750 96 6 0 3069 3164 184661224 184661129 1.320000e-30 145.0
15 TraesCS4B01G132600 chr1A 94.565 92 5 0 3063 3154 480425668 480425577 4.750000e-30 143.0
16 TraesCS4B01G132600 chr1A 86.792 53 6 1 4348 4399 440885252 440885304 1.770000e-04 58.4
17 TraesCS4B01G132600 chr3D 91.509 106 4 5 3065 3166 545547885 545547781 1.710000e-29 141.0
18 TraesCS4B01G132600 chr2A 92.079 101 6 2 3058 3157 36742313 36742412 1.710000e-29 141.0
19 TraesCS4B01G132600 chr5D 97.368 38 1 0 4365 4402 438782952 438782915 1.060000e-06 65.8
20 TraesCS4B01G132600 chr5B 95.122 41 2 0 4362 4402 440023209 440023169 1.060000e-06 65.8
21 TraesCS4B01G132600 chr5B 93.023 43 1 2 4358 4399 17982593 17982634 1.370000e-05 62.1
22 TraesCS4B01G132600 chrUn 93.182 44 2 1 4359 4402 30123201 30123159 3.810000e-06 63.9
23 TraesCS4B01G132600 chr3B 88.462 52 4 1 4348 4399 11069978 11070027 1.370000e-05 62.1
24 TraesCS4B01G132600 chr3B 87.037 54 1 4 4345 4398 132400450 132400497 6.370000e-04 56.5
25 TraesCS4B01G132600 chr6B 92.500 40 3 0 4363 4402 501774044 501774005 1.770000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G132600 chr4B 172503033 172507588 4555 True 8414.000000 8414 100.000000 1 4556 1 chr4B.!!$R1 4555
1 TraesCS4B01G132600 chr4D 111935478 111939822 4344 True 1857.666667 4165 91.573333 1 4323 3 chr4D.!!$R2 4322
2 TraesCS4B01G132600 chr4A 465407783 465412160 4377 False 1290.000000 2169 91.069750 1 4321 4 chr4A.!!$F1 4320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 350 0.749454 GCCCAGGTTCATGCCACTAG 60.749 60.0 0.00 0.00 0.00 2.57 F
1120 1273 0.387565 GGTTGCTCTCGGGAGATCTC 59.612 60.0 18.81 14.75 41.86 2.75 F
1938 2101 0.038744 AACAACCCTGGCAGGATCTG 59.961 55.0 34.84 26.57 37.67 2.90 F
2455 2643 0.178961 AAGGGGAAGGACAAACAGGC 60.179 55.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 2095 0.110056 CACAACGCTGCAACAGATCC 60.110 55.0 0.00 0.0 32.44 3.36 R
2612 2800 0.524862 GCATGGTTTCCTGCAGTCAG 59.475 55.0 13.81 0.0 38.28 3.51 R
3137 3394 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.0 0.00 0.0 0.00 4.00 R
4402 4703 0.109781 CAAATTCGGCGACAAGGGTG 60.110 55.0 10.16 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
214 217 5.063060 GCAAATGATTGGAGAAAAGCATGTC 59.937 40.000 0.00 0.00 36.35 3.06
227 230 1.449601 CATGTCGGGGCACACTACC 60.450 63.158 0.00 0.00 0.00 3.18
241 244 1.135373 CACTACCGCGGGATATGCTAG 60.135 57.143 31.76 21.23 0.00 3.42
340 350 0.749454 GCCCAGGTTCATGCCACTAG 60.749 60.000 0.00 0.00 0.00 2.57
405 443 2.119484 AATCGACGCAACAGGGGGAA 62.119 55.000 0.00 0.00 0.00 3.97
553 643 2.500229 TCTTGGCGAGTTTACCTTTGG 58.500 47.619 0.77 0.00 0.00 3.28
658 760 1.686587 GCTAGAGGAGGAAGAAGAGCC 59.313 57.143 0.00 0.00 0.00 4.70
845 968 2.593436 AACGCTTGGGTCCGGTTG 60.593 61.111 0.00 0.00 0.00 3.77
846 969 3.409605 AACGCTTGGGTCCGGTTGT 62.410 57.895 0.00 0.00 0.00 3.32
1112 1265 2.343163 CTAGCTCCGGTTGCTCTCGG 62.343 65.000 23.39 11.68 46.89 4.63
1120 1273 0.387565 GGTTGCTCTCGGGAGATCTC 59.612 60.000 18.81 14.75 41.86 2.75
1121 1274 1.398692 GTTGCTCTCGGGAGATCTCT 58.601 55.000 18.81 0.00 41.86 3.10
1122 1275 1.066908 GTTGCTCTCGGGAGATCTCTG 59.933 57.143 18.81 14.63 41.86 3.35
1123 1276 0.548510 TGCTCTCGGGAGATCTCTGA 59.451 55.000 18.81 17.72 41.86 3.27
1148 1301 8.389779 ACTGAAATCTCTTCTTCCTTTTTCTC 57.610 34.615 0.00 0.00 0.00 2.87
1150 1303 8.388484 TGAAATCTCTTCTTCCTTTTTCTCTG 57.612 34.615 0.00 0.00 0.00 3.35
1273 1426 6.269077 TCGAGGGCAAGAATCTGGTAATATAA 59.731 38.462 0.00 0.00 0.00 0.98
1274 1427 7.038302 TCGAGGGCAAGAATCTGGTAATATAAT 60.038 37.037 0.00 0.00 0.00 1.28
1275 1428 7.278868 CGAGGGCAAGAATCTGGTAATATAATC 59.721 40.741 0.00 0.00 0.00 1.75
1276 1429 7.106239 AGGGCAAGAATCTGGTAATATAATCG 58.894 38.462 0.00 0.00 0.00 3.34
1277 1430 6.879458 GGGCAAGAATCTGGTAATATAATCGT 59.121 38.462 0.00 0.00 0.00 3.73
1278 1431 8.038944 GGGCAAGAATCTGGTAATATAATCGTA 58.961 37.037 0.00 0.00 0.00 3.43
1292 1449 8.539770 AATATAATCGTATGCACTCTTCCTTG 57.460 34.615 0.00 0.00 0.00 3.61
1297 1454 1.023513 ATGCACTCTTCCTTGCTCGC 61.024 55.000 0.00 0.00 39.62 5.03
1357 1514 3.329225 TGTTTGGTGTCATGGGAGTATCA 59.671 43.478 0.00 0.00 36.25 2.15
1403 1560 2.270923 TGCAATGTGATACGTGCTCTC 58.729 47.619 0.00 0.00 34.16 3.20
1473 1631 2.671619 GGCAACCTGGCTGCGTTA 60.672 61.111 15.31 0.00 40.88 3.18
1495 1653 1.640428 TCCGCGTGCTAATTCTTCAG 58.360 50.000 4.92 0.00 0.00 3.02
1609 1771 7.883833 CCTTCAGTTATCATGGATGATGAGATT 59.116 37.037 11.66 0.00 46.34 2.40
1628 1790 2.214376 TAAACAATGGTGCCCAGGAG 57.786 50.000 0.00 0.00 36.75 3.69
1789 1952 2.241160 TGTTTGCCTGAGTGCATCATT 58.759 42.857 0.00 0.00 41.70 2.57
1878 2041 1.338020 GTGTTTGAAAGGCTGGAGGTG 59.662 52.381 0.00 0.00 0.00 4.00
1879 2042 1.064017 TGTTTGAAAGGCTGGAGGTGT 60.064 47.619 0.00 0.00 0.00 4.16
1932 2095 0.389025 GACCAAAACAACCCTGGCAG 59.611 55.000 7.75 7.75 33.19 4.85
1938 2101 0.038744 AACAACCCTGGCAGGATCTG 59.961 55.000 34.84 26.57 37.67 2.90
1963 2126 0.366871 GCGTTGTGCGTGTCTATCTG 59.633 55.000 0.00 0.00 43.66 2.90
2015 2184 2.656560 ATGTCTGCGTCTACCAAGTC 57.343 50.000 0.00 0.00 0.00 3.01
2062 2231 3.131709 ACAATGTCCCTCACTCTGTTG 57.868 47.619 0.00 0.00 0.00 3.33
2064 2233 3.117888 ACAATGTCCCTCACTCTGTTGTT 60.118 43.478 0.00 0.00 0.00 2.83
2455 2643 0.178961 AAGGGGAAGGACAAACAGGC 60.179 55.000 0.00 0.00 0.00 4.85
2664 2852 2.332063 AGTATTTGCCAGATGGGACG 57.668 50.000 0.12 0.00 40.01 4.79
2768 2956 1.136305 ACCCACATCTCGTATGTTCCG 59.864 52.381 3.84 0.00 0.00 4.30
2877 3065 5.845103 TGCAATTGTTTGTGAACATCTGAT 58.155 33.333 7.40 0.00 44.71 2.90
3003 3223 2.405892 ATTTTGTCTCGTGTTGCTGC 57.594 45.000 0.00 0.00 0.00 5.25
3005 3225 1.308047 TTTGTCTCGTGTTGCTGCAT 58.692 45.000 1.84 0.00 0.00 3.96
3072 3329 2.229784 GGCTTGTTTGCTGCATTCTACT 59.770 45.455 1.84 0.00 0.00 2.57
3073 3330 3.496155 GCTTGTTTGCTGCATTCTACTC 58.504 45.455 1.84 0.00 0.00 2.59
3074 3331 3.671702 GCTTGTTTGCTGCATTCTACTCC 60.672 47.826 1.84 0.00 0.00 3.85
3075 3332 2.436417 TGTTTGCTGCATTCTACTCCC 58.564 47.619 1.84 0.00 0.00 4.30
3076 3333 2.040278 TGTTTGCTGCATTCTACTCCCT 59.960 45.455 1.84 0.00 0.00 4.20
3077 3334 2.680339 GTTTGCTGCATTCTACTCCCTC 59.320 50.000 1.84 0.00 0.00 4.30
3078 3335 0.833287 TGCTGCATTCTACTCCCTCC 59.167 55.000 0.00 0.00 0.00 4.30
3079 3336 0.249657 GCTGCATTCTACTCCCTCCG 60.250 60.000 0.00 0.00 0.00 4.63
3080 3337 1.115467 CTGCATTCTACTCCCTCCGT 58.885 55.000 0.00 0.00 0.00 4.69
3081 3338 1.067821 CTGCATTCTACTCCCTCCGTC 59.932 57.143 0.00 0.00 0.00 4.79
3082 3339 0.389757 GCATTCTACTCCCTCCGTCC 59.610 60.000 0.00 0.00 0.00 4.79
3083 3340 1.041437 CATTCTACTCCCTCCGTCCC 58.959 60.000 0.00 0.00 0.00 4.46
3084 3341 0.635009 ATTCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
3085 3342 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
3086 3343 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
3087 3344 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
3088 3345 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
3089 3346 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
3090 3347 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3091 3348 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3092 3349 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3093 3350 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3094 3351 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3095 3352 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3096 3353 6.269194 TCCCTCCGTCCCATAATATAAGAAT 58.731 40.000 0.00 0.00 0.00 2.40
3097 3354 6.156256 TCCCTCCGTCCCATAATATAAGAATG 59.844 42.308 0.00 0.00 0.00 2.67
3098 3355 6.070194 CCCTCCGTCCCATAATATAAGAATGT 60.070 42.308 0.00 0.00 0.00 2.71
3099 3356 7.394816 CCTCCGTCCCATAATATAAGAATGTT 58.605 38.462 0.00 0.00 0.00 2.71
3100 3357 7.883311 CCTCCGTCCCATAATATAAGAATGTTT 59.117 37.037 0.00 0.00 0.00 2.83
3101 3358 9.284968 CTCCGTCCCATAATATAAGAATGTTTT 57.715 33.333 0.00 0.00 0.00 2.43
3102 3359 9.635404 TCCGTCCCATAATATAAGAATGTTTTT 57.365 29.630 0.00 0.00 0.00 1.94
3103 3360 9.677567 CCGTCCCATAATATAAGAATGTTTTTG 57.322 33.333 0.00 0.00 0.00 2.44
3120 3377 8.445275 ATGTTTTTGACATTAGTGTAGTGTCA 57.555 30.769 7.88 7.88 46.80 3.58
3126 3383 7.806149 TGACATTAGTGTAGTGTCATAAACG 57.194 36.000 7.88 0.00 46.23 3.60
3127 3384 7.372714 TGACATTAGTGTAGTGTCATAAACGT 58.627 34.615 7.88 0.00 46.23 3.99
3128 3385 7.868922 TGACATTAGTGTAGTGTCATAAACGTT 59.131 33.333 7.88 0.00 46.23 3.99
3129 3386 8.236084 ACATTAGTGTAGTGTCATAAACGTTC 57.764 34.615 0.00 0.00 36.63 3.95
3130 3387 8.086522 ACATTAGTGTAGTGTCATAAACGTTCT 58.913 33.333 0.00 0.00 36.63 3.01
3131 3388 8.922676 CATTAGTGTAGTGTCATAAACGTTCTT 58.077 33.333 0.00 0.00 0.00 2.52
3144 3401 9.414295 TCATAAACGTTCTTATATTATGGGACG 57.586 33.333 0.00 9.33 35.62 4.79
3145 3402 8.653338 CATAAACGTTCTTATATTATGGGACGG 58.347 37.037 0.00 1.76 32.79 4.79
3146 3403 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3147 3404 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3148 3405 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3149 3406 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3150 3407 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3151 3408 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3152 3409 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3153 3410 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3154 3411 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
3170 3427 8.706521 GGAGGGAGTACATATTAGAAAGACTTT 58.293 37.037 0.00 0.00 0.00 2.66
3288 3549 7.332926 GCAATCTGTGTATGGTATGGATAAGAG 59.667 40.741 0.00 0.00 0.00 2.85
3387 3649 1.746787 CACTAGCTGGCATGCAAATGA 59.253 47.619 21.36 0.01 34.99 2.57
3591 3855 2.224621 TGCTGGGAGTGAAAGAGAAAGG 60.225 50.000 0.00 0.00 0.00 3.11
3643 3909 8.780003 TCCTAGTTAAGATAGTAGGAACTCTGT 58.220 37.037 5.04 0.00 43.84 3.41
3846 4119 9.665264 CAGTTCTTGAGTTTTACTGTAATTTCC 57.335 33.333 0.37 0.00 33.34 3.13
3850 4123 8.349983 TCTTGAGTTTTACTGTAATTTCCTTGC 58.650 33.333 0.37 0.00 0.00 4.01
3851 4124 7.575414 TGAGTTTTACTGTAATTTCCTTGCA 57.425 32.000 0.37 0.00 0.00 4.08
3862 4136 1.927487 TTCCTTGCATTCCAGCATGT 58.073 45.000 0.00 0.00 45.19 3.21
3863 4137 1.179152 TCCTTGCATTCCAGCATGTG 58.821 50.000 0.00 0.00 45.19 3.21
3865 4139 1.274167 CCTTGCATTCCAGCATGTGTT 59.726 47.619 0.00 0.00 45.19 3.32
3872 4146 2.936919 TCCAGCATGTGTTCTGAAGT 57.063 45.000 0.00 0.00 32.26 3.01
3875 4149 4.713553 TCCAGCATGTGTTCTGAAGTTAA 58.286 39.130 0.00 0.00 32.26 2.01
3882 4156 6.580041 GCATGTGTTCTGAAGTTAACTGAATG 59.420 38.462 9.34 5.27 0.00 2.67
3889 4163 4.627058 TGAAGTTAACTGAATGTGCGAGA 58.373 39.130 9.34 0.00 0.00 4.04
3921 4203 8.908786 AAAGTGAGAAAGTCTATCATTTGTGA 57.091 30.769 0.00 0.00 0.00 3.58
3922 4204 7.897575 AGTGAGAAAGTCTATCATTTGTGAC 57.102 36.000 0.00 0.00 0.00 3.67
3935 4217 4.634004 TCATTTGTGACGTCTGTTTCAGTT 59.366 37.500 17.92 0.00 32.61 3.16
3960 4242 2.738314 GCATTGTGCTGAAACAAATCCC 59.262 45.455 1.29 0.00 42.98 3.85
3972 4254 4.574674 AACAAATCCCAGCTACTCATCA 57.425 40.909 0.00 0.00 0.00 3.07
3996 4278 7.741554 ACAGGAGTGAGGAGTTTATATTTCT 57.258 36.000 0.00 0.00 0.00 2.52
3997 4279 7.787028 ACAGGAGTGAGGAGTTTATATTTCTC 58.213 38.462 0.00 0.00 0.00 2.87
3998 4280 7.621683 ACAGGAGTGAGGAGTTTATATTTCTCT 59.378 37.037 0.00 0.00 0.00 3.10
3999 4281 9.137459 CAGGAGTGAGGAGTTTATATTTCTCTA 57.863 37.037 0.00 0.00 0.00 2.43
4000 4282 9.890915 AGGAGTGAGGAGTTTATATTTCTCTAT 57.109 33.333 0.00 0.00 0.00 1.98
4001 4283 9.921637 GGAGTGAGGAGTTTATATTTCTCTATG 57.078 37.037 0.00 0.00 0.00 2.23
4002 4284 9.921637 GAGTGAGGAGTTTATATTTCTCTATGG 57.078 37.037 0.00 0.00 0.00 2.74
4003 4285 9.661954 AGTGAGGAGTTTATATTTCTCTATGGA 57.338 33.333 0.00 0.00 0.00 3.41
4006 4288 9.936759 GAGGAGTTTATATTTCTCTATGGAAGG 57.063 37.037 0.00 0.00 0.00 3.46
4007 4289 9.453830 AGGAGTTTATATTTCTCTATGGAAGGT 57.546 33.333 0.00 0.00 0.00 3.50
4060 4348 8.874744 AATCATCCAGGTCCTATGAAATTATG 57.125 34.615 8.18 0.00 33.60 1.90
4066 4354 7.006509 CCAGGTCCTATGAAATTATGGTCATT 58.993 38.462 0.00 0.00 36.00 2.57
4080 4368 7.534085 TTATGGTCATTGAAAGTACATCGAC 57.466 36.000 0.00 0.00 0.00 4.20
4084 4372 7.327975 TGGTCATTGAAAGTACATCGACTTAT 58.672 34.615 0.00 0.00 38.75 1.73
4086 4374 9.477484 GGTCATTGAAAGTACATCGACTTATAT 57.523 33.333 0.00 0.00 38.75 0.86
4089 4377 9.995379 CATTGAAAGTACATCGACTTATATTCG 57.005 33.333 0.00 0.00 38.75 3.34
4090 4378 7.618964 TGAAAGTACATCGACTTATATTCGC 57.381 36.000 0.00 0.00 38.75 4.70
4091 4379 7.197703 TGAAAGTACATCGACTTATATTCGCA 58.802 34.615 0.00 0.00 38.75 5.10
4092 4380 7.703197 TGAAAGTACATCGACTTATATTCGCAA 59.297 33.333 0.00 0.00 38.75 4.85
4095 4383 8.415192 AGTACATCGACTTATATTCGCAAAAA 57.585 30.769 0.00 0.00 36.40 1.94
4163 4456 6.432162 AGATTGCAAAGAAGCTCTGTTAATCA 59.568 34.615 1.71 0.00 34.99 2.57
4182 4483 9.537848 GTTAATCATAACACAAACTCTTAACCG 57.462 33.333 0.00 0.00 40.93 4.44
4183 4484 7.739498 AATCATAACACAAACTCTTAACCGT 57.261 32.000 0.00 0.00 0.00 4.83
4203 4504 7.141100 ACCGTAAGTAAACATGAAAGGAATG 57.859 36.000 0.00 0.00 0.00 2.67
4218 4519 6.094048 TGAAAGGAATGCATTTAGTAGCACTC 59.906 38.462 14.33 0.00 44.49 3.51
4229 4530 2.330216 AGTAGCACTCTGAACCCACTT 58.670 47.619 0.00 0.00 0.00 3.16
4276 4577 5.351233 TTTACAGCCGTGATAAAACACAG 57.649 39.130 0.00 0.00 40.34 3.66
4278 4579 3.997762 ACAGCCGTGATAAAACACAGTA 58.002 40.909 0.00 0.00 40.34 2.74
4323 4624 3.270877 GGACACACATCCACAATCCTAC 58.729 50.000 0.00 0.00 38.77 3.18
4324 4625 3.055094 GGACACACATCCACAATCCTACT 60.055 47.826 0.00 0.00 38.77 2.57
4325 4626 4.184629 GACACACATCCACAATCCTACTC 58.815 47.826 0.00 0.00 0.00 2.59
4326 4627 3.055094 ACACACATCCACAATCCTACTCC 60.055 47.826 0.00 0.00 0.00 3.85
4327 4628 2.505819 ACACATCCACAATCCTACTCCC 59.494 50.000 0.00 0.00 0.00 4.30
4328 4629 2.774234 CACATCCACAATCCTACTCCCT 59.226 50.000 0.00 0.00 0.00 4.20
4329 4630 3.041946 ACATCCACAATCCTACTCCCTC 58.958 50.000 0.00 0.00 0.00 4.30
4330 4631 2.176247 TCCACAATCCTACTCCCTCC 57.824 55.000 0.00 0.00 0.00 4.30
4331 4632 0.753262 CCACAATCCTACTCCCTCCG 59.247 60.000 0.00 0.00 0.00 4.63
4332 4633 1.486211 CACAATCCTACTCCCTCCGT 58.514 55.000 0.00 0.00 0.00 4.69
4333 4634 1.831736 CACAATCCTACTCCCTCCGTT 59.168 52.381 0.00 0.00 0.00 4.44
4334 4635 2.108970 ACAATCCTACTCCCTCCGTTC 58.891 52.381 0.00 0.00 0.00 3.95
4335 4636 1.413077 CAATCCTACTCCCTCCGTTCC 59.587 57.143 0.00 0.00 0.00 3.62
4336 4637 0.467659 ATCCTACTCCCTCCGTTCCG 60.468 60.000 0.00 0.00 0.00 4.30
4337 4638 1.379576 CCTACTCCCTCCGTTCCGT 60.380 63.158 0.00 0.00 0.00 4.69
4338 4639 0.107017 CCTACTCCCTCCGTTCCGTA 60.107 60.000 0.00 0.00 0.00 4.02
4339 4640 1.683011 CCTACTCCCTCCGTTCCGTAA 60.683 57.143 0.00 0.00 0.00 3.18
4340 4641 2.305009 CTACTCCCTCCGTTCCGTAAT 58.695 52.381 0.00 0.00 0.00 1.89
4341 4642 0.822164 ACTCCCTCCGTTCCGTAATG 59.178 55.000 0.00 0.00 0.00 1.90
4342 4643 0.529992 CTCCCTCCGTTCCGTAATGC 60.530 60.000 0.00 0.00 0.00 3.56
4343 4644 1.219664 CCCTCCGTTCCGTAATGCA 59.780 57.895 0.00 0.00 0.00 3.96
4344 4645 0.391927 CCCTCCGTTCCGTAATGCAA 60.392 55.000 0.00 0.00 0.00 4.08
4345 4646 1.006832 CCTCCGTTCCGTAATGCAAG 58.993 55.000 0.00 0.00 0.00 4.01
4346 4647 1.404986 CCTCCGTTCCGTAATGCAAGA 60.405 52.381 0.00 0.00 0.00 3.02
4347 4648 2.550978 CTCCGTTCCGTAATGCAAGAT 58.449 47.619 0.00 0.00 0.00 2.40
4348 4649 3.491964 CCTCCGTTCCGTAATGCAAGATA 60.492 47.826 0.00 0.00 0.00 1.98
4349 4650 4.307432 CTCCGTTCCGTAATGCAAGATAT 58.693 43.478 0.00 0.00 0.00 1.63
4350 4651 4.699637 TCCGTTCCGTAATGCAAGATATT 58.300 39.130 0.00 0.00 0.00 1.28
4351 4652 5.120399 TCCGTTCCGTAATGCAAGATATTT 58.880 37.500 0.00 0.00 0.00 1.40
4352 4653 5.587043 TCCGTTCCGTAATGCAAGATATTTT 59.413 36.000 0.00 0.00 0.00 1.82
4353 4654 6.094325 TCCGTTCCGTAATGCAAGATATTTTT 59.906 34.615 0.00 0.00 0.00 1.94
4354 4655 6.413818 CCGTTCCGTAATGCAAGATATTTTTC 59.586 38.462 0.00 0.00 0.00 2.29
4355 4656 6.413818 CGTTCCGTAATGCAAGATATTTTTCC 59.586 38.462 0.00 0.00 0.00 3.13
4356 4657 7.254852 GTTCCGTAATGCAAGATATTTTTCCA 58.745 34.615 0.00 0.00 0.00 3.53
4357 4658 7.397892 TCCGTAATGCAAGATATTTTTCCAA 57.602 32.000 0.00 0.00 0.00 3.53
4358 4659 7.479980 TCCGTAATGCAAGATATTTTTCCAAG 58.520 34.615 0.00 0.00 0.00 3.61
4359 4660 6.198966 CCGTAATGCAAGATATTTTTCCAAGC 59.801 38.462 0.00 0.00 0.00 4.01
4360 4661 6.974622 CGTAATGCAAGATATTTTTCCAAGCT 59.025 34.615 0.00 0.00 0.00 3.74
4361 4662 8.128582 CGTAATGCAAGATATTTTTCCAAGCTA 58.871 33.333 0.00 0.00 0.00 3.32
4362 4663 9.971922 GTAATGCAAGATATTTTTCCAAGCTAT 57.028 29.630 0.00 0.00 0.00 2.97
4366 4667 8.632679 TGCAAGATATTTTTCCAAGCTATTAGG 58.367 33.333 0.00 0.00 0.00 2.69
4367 4668 8.633561 GCAAGATATTTTTCCAAGCTATTAGGT 58.366 33.333 0.00 0.00 0.00 3.08
4374 4675 9.833917 ATTTTTCCAAGCTATTAGGTAGTACTC 57.166 33.333 0.00 0.00 32.72 2.59
4375 4676 6.973460 TTCCAAGCTATTAGGTAGTACTCC 57.027 41.667 0.00 0.48 32.72 3.85
4376 4677 5.392125 TCCAAGCTATTAGGTAGTACTCCC 58.608 45.833 0.00 0.00 32.72 4.30
4377 4678 5.135705 TCCAAGCTATTAGGTAGTACTCCCT 59.864 44.000 12.22 12.22 32.72 4.20
4378 4679 5.477637 CCAAGCTATTAGGTAGTACTCCCTC 59.522 48.000 10.79 0.00 32.72 4.30
4379 4680 6.308566 CAAGCTATTAGGTAGTACTCCCTCT 58.691 44.000 10.79 2.68 32.72 3.69
4380 4681 5.883180 AGCTATTAGGTAGTACTCCCTCTG 58.117 45.833 10.79 1.52 32.72 3.35
4381 4682 5.373257 AGCTATTAGGTAGTACTCCCTCTGT 59.627 44.000 10.79 1.23 32.72 3.41
4382 4683 6.561838 AGCTATTAGGTAGTACTCCCTCTGTA 59.438 42.308 10.79 2.33 32.72 2.74
4383 4684 7.073470 AGCTATTAGGTAGTACTCCCTCTGTAA 59.927 40.741 10.79 0.00 32.72 2.41
4384 4685 7.723172 GCTATTAGGTAGTACTCCCTCTGTAAA 59.277 40.741 10.79 0.00 32.72 2.01
4385 4686 9.287373 CTATTAGGTAGTACTCCCTCTGTAAAG 57.713 40.741 10.79 0.00 32.08 1.85
4386 4687 5.793034 AGGTAGTACTCCCTCTGTAAAGA 57.207 43.478 0.11 0.00 0.00 2.52
4387 4688 6.150034 AGGTAGTACTCCCTCTGTAAAGAA 57.850 41.667 0.11 0.00 0.00 2.52
4388 4689 6.559429 AGGTAGTACTCCCTCTGTAAAGAAA 58.441 40.000 0.11 0.00 0.00 2.52
4389 4690 7.190501 AGGTAGTACTCCCTCTGTAAAGAAAT 58.809 38.462 0.11 0.00 0.00 2.17
4390 4691 8.342270 AGGTAGTACTCCCTCTGTAAAGAAATA 58.658 37.037 0.11 0.00 0.00 1.40
4391 4692 9.145442 GGTAGTACTCCCTCTGTAAAGAAATAT 57.855 37.037 0.00 0.00 0.00 1.28
4397 4698 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
4398 4699 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
4399 4700 6.146347 CCCTCTGTAAAGAAATATAAGAGCGC 59.854 42.308 0.00 0.00 0.00 5.92
4400 4701 6.926272 CCTCTGTAAAGAAATATAAGAGCGCT 59.074 38.462 11.27 11.27 0.00 5.92
4401 4702 7.439655 CCTCTGTAAAGAAATATAAGAGCGCTT 59.560 37.037 13.26 8.09 38.15 4.68
4402 4703 8.354011 TCTGTAAAGAAATATAAGAGCGCTTC 57.646 34.615 13.26 4.88 35.56 3.86
4403 4704 7.979537 TCTGTAAAGAAATATAAGAGCGCTTCA 59.020 33.333 13.26 0.00 35.56 3.02
4404 4705 7.906160 TGTAAAGAAATATAAGAGCGCTTCAC 58.094 34.615 13.26 0.00 35.56 3.18
4405 4706 5.993106 AAGAAATATAAGAGCGCTTCACC 57.007 39.130 13.26 0.00 35.56 4.02
4406 4707 4.381411 AGAAATATAAGAGCGCTTCACCC 58.619 43.478 13.26 0.00 35.56 4.61
4407 4708 4.101741 AGAAATATAAGAGCGCTTCACCCT 59.898 41.667 13.26 0.00 35.56 4.34
4408 4709 4.423625 AATATAAGAGCGCTTCACCCTT 57.576 40.909 13.26 12.66 35.56 3.95
4409 4710 2.029838 ATAAGAGCGCTTCACCCTTG 57.970 50.000 13.26 0.00 35.56 3.61
4410 4711 0.685097 TAAGAGCGCTTCACCCTTGT 59.315 50.000 13.26 0.00 35.56 3.16
4411 4712 0.603975 AAGAGCGCTTCACCCTTGTC 60.604 55.000 13.26 0.00 0.00 3.18
4412 4713 2.357517 AGCGCTTCACCCTTGTCG 60.358 61.111 2.64 0.00 0.00 4.35
4413 4714 4.090057 GCGCTTCACCCTTGTCGC 62.090 66.667 0.00 0.00 35.82 5.19
4414 4715 3.423154 CGCTTCACCCTTGTCGCC 61.423 66.667 0.00 0.00 0.00 5.54
4415 4716 3.423154 GCTTCACCCTTGTCGCCG 61.423 66.667 0.00 0.00 0.00 6.46
4416 4717 2.342279 CTTCACCCTTGTCGCCGA 59.658 61.111 0.00 0.00 0.00 5.54
4417 4718 1.301401 CTTCACCCTTGTCGCCGAA 60.301 57.895 0.00 0.00 0.00 4.30
4418 4719 0.673644 CTTCACCCTTGTCGCCGAAT 60.674 55.000 0.00 0.00 0.00 3.34
4419 4720 0.250553 TTCACCCTTGTCGCCGAATT 60.251 50.000 0.00 0.00 0.00 2.17
4420 4721 0.250553 TCACCCTTGTCGCCGAATTT 60.251 50.000 0.00 0.00 0.00 1.82
4421 4722 0.109781 CACCCTTGTCGCCGAATTTG 60.110 55.000 0.00 0.00 0.00 2.32
4422 4723 1.154035 CCCTTGTCGCCGAATTTGC 60.154 57.895 0.00 0.00 0.00 3.68
4423 4724 1.586154 CCCTTGTCGCCGAATTTGCT 61.586 55.000 0.00 0.00 0.00 3.91
4424 4725 0.454957 CCTTGTCGCCGAATTTGCTG 60.455 55.000 0.00 0.00 0.00 4.41
4425 4726 0.516877 CTTGTCGCCGAATTTGCTGA 59.483 50.000 0.00 0.00 0.00 4.26
4426 4727 0.516877 TTGTCGCCGAATTTGCTGAG 59.483 50.000 0.00 0.00 0.00 3.35
4427 4728 1.226128 GTCGCCGAATTTGCTGAGC 60.226 57.895 0.00 0.00 0.00 4.26
4428 4729 1.670730 TCGCCGAATTTGCTGAGCA 60.671 52.632 1.40 1.40 36.47 4.26
4429 4730 1.512734 CGCCGAATTTGCTGAGCAC 60.513 57.895 6.64 0.00 38.71 4.40
4430 4731 1.580942 GCCGAATTTGCTGAGCACA 59.419 52.632 6.64 0.00 38.71 4.57
4431 4732 0.171903 GCCGAATTTGCTGAGCACAT 59.828 50.000 6.64 2.56 38.71 3.21
4432 4733 1.796617 GCCGAATTTGCTGAGCACATC 60.797 52.381 6.64 4.88 38.71 3.06
4433 4734 1.469703 CCGAATTTGCTGAGCACATCA 59.530 47.619 6.64 0.00 38.71 3.07
4434 4735 2.095110 CCGAATTTGCTGAGCACATCAA 60.095 45.455 6.64 0.00 38.71 2.57
4435 4736 3.567530 CGAATTTGCTGAGCACATCAAA 58.432 40.909 6.64 14.05 43.11 2.69
4437 4738 5.334319 CGAATTTGCTGAGCACATCAAATA 58.666 37.500 20.96 1.41 45.68 1.40
4438 4739 5.228635 CGAATTTGCTGAGCACATCAAATAC 59.771 40.000 20.96 0.00 45.68 1.89
4439 4740 5.909621 ATTTGCTGAGCACATCAAATACT 57.090 34.783 19.80 2.59 45.06 2.12
4440 4741 5.710513 TTTGCTGAGCACATCAAATACTT 57.289 34.783 6.64 0.00 38.71 2.24
4441 4742 4.952262 TGCTGAGCACATCAAATACTTC 57.048 40.909 1.40 0.00 37.52 3.01
4442 4743 4.582869 TGCTGAGCACATCAAATACTTCT 58.417 39.130 1.40 0.00 37.52 2.85
4443 4744 5.005740 TGCTGAGCACATCAAATACTTCTT 58.994 37.500 1.40 0.00 37.52 2.52
4444 4745 5.474532 TGCTGAGCACATCAAATACTTCTTT 59.525 36.000 1.40 0.00 37.52 2.52
4445 4746 6.016024 TGCTGAGCACATCAAATACTTCTTTT 60.016 34.615 1.40 0.00 37.52 2.27
4446 4747 6.307318 GCTGAGCACATCAAATACTTCTTTTG 59.693 38.462 0.00 0.00 37.52 2.44
4447 4748 6.151691 TGAGCACATCAAATACTTCTTTTGC 58.848 36.000 0.00 0.00 34.02 3.68
4448 4749 6.016024 TGAGCACATCAAATACTTCTTTTGCT 60.016 34.615 0.00 0.00 34.02 3.91
4449 4750 7.174772 TGAGCACATCAAATACTTCTTTTGCTA 59.825 33.333 0.00 0.00 34.02 3.49
4450 4751 7.533426 AGCACATCAAATACTTCTTTTGCTAG 58.467 34.615 0.00 0.00 34.73 3.42
4451 4752 7.391554 AGCACATCAAATACTTCTTTTGCTAGA 59.608 33.333 0.00 0.00 34.73 2.43
4452 4753 8.023128 GCACATCAAATACTTCTTTTGCTAGAA 58.977 33.333 0.00 0.00 34.73 2.10
4453 4754 9.897744 CACATCAAATACTTCTTTTGCTAGAAA 57.102 29.630 0.00 0.00 33.96 2.52
4462 4763 8.870075 ACTTCTTTTGCTAGAAATAATCTGGT 57.130 30.769 0.00 0.00 38.80 4.00
4463 4764 9.301897 ACTTCTTTTGCTAGAAATAATCTGGTT 57.698 29.630 0.00 0.00 38.80 3.67
4468 4769 9.801873 TTTTGCTAGAAATAATCTGGTTTATGC 57.198 29.630 0.00 0.00 38.80 3.14
4469 4770 7.510549 TGCTAGAAATAATCTGGTTTATGCC 57.489 36.000 0.00 0.00 38.80 4.40
4470 4771 6.490040 TGCTAGAAATAATCTGGTTTATGCCC 59.510 38.462 0.00 0.00 38.80 5.36
4471 4772 6.490040 GCTAGAAATAATCTGGTTTATGCCCA 59.510 38.462 0.00 0.00 38.80 5.36
4472 4773 7.014230 GCTAGAAATAATCTGGTTTATGCCCAA 59.986 37.037 0.00 0.00 38.80 4.12
4473 4774 7.112452 AGAAATAATCTGGTTTATGCCCAAC 57.888 36.000 0.00 0.00 36.88 3.77
4474 4775 5.514274 AATAATCTGGTTTATGCCCAACG 57.486 39.130 0.00 0.00 0.00 4.10
4475 4776 2.799126 ATCTGGTTTATGCCCAACGA 57.201 45.000 0.00 0.00 0.00 3.85
4476 4777 2.570415 TCTGGTTTATGCCCAACGAA 57.430 45.000 0.00 0.00 0.00 3.85
4477 4778 2.432444 TCTGGTTTATGCCCAACGAAG 58.568 47.619 0.00 0.00 0.00 3.79
4478 4779 2.039216 TCTGGTTTATGCCCAACGAAGA 59.961 45.455 0.00 0.00 0.00 2.87
4479 4780 2.817258 CTGGTTTATGCCCAACGAAGAA 59.183 45.455 0.00 0.00 0.00 2.52
4480 4781 2.554893 TGGTTTATGCCCAACGAAGAAC 59.445 45.455 0.00 0.00 0.00 3.01
4481 4782 2.554893 GGTTTATGCCCAACGAAGAACA 59.445 45.455 0.00 0.00 0.00 3.18
4482 4783 3.365969 GGTTTATGCCCAACGAAGAACAG 60.366 47.826 0.00 0.00 0.00 3.16
4483 4784 2.851263 TATGCCCAACGAAGAACAGT 57.149 45.000 0.00 0.00 0.00 3.55
4484 4785 2.851263 ATGCCCAACGAAGAACAGTA 57.149 45.000 0.00 0.00 0.00 2.74
4485 4786 1.873698 TGCCCAACGAAGAACAGTAC 58.126 50.000 0.00 0.00 0.00 2.73
4486 4787 0.788391 GCCCAACGAAGAACAGTACG 59.212 55.000 0.00 0.00 0.00 3.67
4487 4788 1.870993 GCCCAACGAAGAACAGTACGT 60.871 52.381 0.00 0.00 40.64 3.57
4488 4789 2.607771 GCCCAACGAAGAACAGTACGTA 60.608 50.000 0.00 0.00 38.00 3.57
4489 4790 3.240069 CCCAACGAAGAACAGTACGTAG 58.760 50.000 0.00 0.00 38.00 3.51
4491 4792 4.083324 CCCAACGAAGAACAGTACGTAGTA 60.083 45.833 1.81 0.00 45.11 1.82
4509 4810 8.309163 ACGTAGTAAATAAATCCGACAAAACA 57.691 30.769 0.00 0.00 41.94 2.83
4510 4811 8.437742 ACGTAGTAAATAAATCCGACAAAACAG 58.562 33.333 0.00 0.00 41.94 3.16
4511 4812 7.901377 CGTAGTAAATAAATCCGACAAAACAGG 59.099 37.037 0.00 0.00 0.00 4.00
4512 4813 7.153217 AGTAAATAAATCCGACAAAACAGGG 57.847 36.000 0.00 0.00 0.00 4.45
4513 4814 5.400066 AAATAAATCCGACAAAACAGGGG 57.600 39.130 0.00 0.00 0.00 4.79
4514 4815 2.668144 AAATCCGACAAAACAGGGGA 57.332 45.000 0.00 0.00 0.00 4.81
4515 4816 1.905637 AATCCGACAAAACAGGGGAC 58.094 50.000 0.00 0.00 0.00 4.46
4516 4817 0.321298 ATCCGACAAAACAGGGGACG 60.321 55.000 0.00 0.00 0.00 4.79
4517 4818 1.070105 CCGACAAAACAGGGGACGA 59.930 57.895 0.00 0.00 0.00 4.20
4518 4819 0.533308 CCGACAAAACAGGGGACGAA 60.533 55.000 0.00 0.00 0.00 3.85
4519 4820 0.584876 CGACAAAACAGGGGACGAAC 59.415 55.000 0.00 0.00 0.00 3.95
4520 4821 1.670791 GACAAAACAGGGGACGAACA 58.329 50.000 0.00 0.00 0.00 3.18
4521 4822 2.018515 GACAAAACAGGGGACGAACAA 58.981 47.619 0.00 0.00 0.00 2.83
4522 4823 2.021457 ACAAAACAGGGGACGAACAAG 58.979 47.619 0.00 0.00 0.00 3.16
4523 4824 1.336755 CAAAACAGGGGACGAACAAGG 59.663 52.381 0.00 0.00 0.00 3.61
4524 4825 0.841289 AAACAGGGGACGAACAAGGA 59.159 50.000 0.00 0.00 0.00 3.36
4525 4826 1.064825 AACAGGGGACGAACAAGGAT 58.935 50.000 0.00 0.00 0.00 3.24
4526 4827 0.324943 ACAGGGGACGAACAAGGATG 59.675 55.000 0.00 0.00 0.00 3.51
4527 4828 0.613260 CAGGGGACGAACAAGGATGA 59.387 55.000 0.00 0.00 0.00 2.92
4528 4829 0.905357 AGGGGACGAACAAGGATGAG 59.095 55.000 0.00 0.00 0.00 2.90
4529 4830 0.744771 GGGGACGAACAAGGATGAGC 60.745 60.000 0.00 0.00 0.00 4.26
4530 4831 0.036388 GGGACGAACAAGGATGAGCA 60.036 55.000 0.00 0.00 0.00 4.26
4531 4832 1.363744 GGACGAACAAGGATGAGCAG 58.636 55.000 0.00 0.00 0.00 4.24
4532 4833 1.066858 GGACGAACAAGGATGAGCAGA 60.067 52.381 0.00 0.00 0.00 4.26
4533 4834 2.266554 GACGAACAAGGATGAGCAGAG 58.733 52.381 0.00 0.00 0.00 3.35
4534 4835 1.895798 ACGAACAAGGATGAGCAGAGA 59.104 47.619 0.00 0.00 0.00 3.10
4535 4836 2.094286 ACGAACAAGGATGAGCAGAGAG 60.094 50.000 0.00 0.00 0.00 3.20
4536 4837 2.738000 CGAACAAGGATGAGCAGAGAGG 60.738 54.545 0.00 0.00 0.00 3.69
4537 4838 1.202330 ACAAGGATGAGCAGAGAGGG 58.798 55.000 0.00 0.00 0.00 4.30
4538 4839 1.202330 CAAGGATGAGCAGAGAGGGT 58.798 55.000 0.00 0.00 0.00 4.34
4539 4840 2.292521 ACAAGGATGAGCAGAGAGGGTA 60.293 50.000 0.00 0.00 0.00 3.69
4540 4841 2.364970 CAAGGATGAGCAGAGAGGGTAG 59.635 54.545 0.00 0.00 0.00 3.18
4541 4842 1.573376 AGGATGAGCAGAGAGGGTAGT 59.427 52.381 0.00 0.00 0.00 2.73
4542 4843 1.686052 GGATGAGCAGAGAGGGTAGTG 59.314 57.143 0.00 0.00 0.00 2.74
4543 4844 1.068434 GATGAGCAGAGAGGGTAGTGC 59.932 57.143 0.00 0.00 36.10 4.40
4544 4845 0.972983 TGAGCAGAGAGGGTAGTGCC 60.973 60.000 0.00 0.00 36.54 5.01
4545 4846 0.972983 GAGCAGAGAGGGTAGTGCCA 60.973 60.000 0.00 0.00 39.65 4.92
4546 4847 0.545309 AGCAGAGAGGGTAGTGCCAA 60.545 55.000 0.00 0.00 39.65 4.52
4547 4848 0.324943 GCAGAGAGGGTAGTGCCAAA 59.675 55.000 0.00 0.00 39.65 3.28
4548 4849 1.271379 GCAGAGAGGGTAGTGCCAAAA 60.271 52.381 0.00 0.00 39.65 2.44
4549 4850 2.814097 GCAGAGAGGGTAGTGCCAAAAA 60.814 50.000 0.00 0.00 39.65 1.94
4550 4851 3.690460 CAGAGAGGGTAGTGCCAAAAAT 58.310 45.455 0.00 0.00 39.65 1.82
4551 4852 3.441572 CAGAGAGGGTAGTGCCAAAAATG 59.558 47.826 0.00 0.00 39.65 2.32
4552 4853 3.330701 AGAGAGGGTAGTGCCAAAAATGA 59.669 43.478 0.00 0.00 39.65 2.57
4553 4854 4.079253 GAGAGGGTAGTGCCAAAAATGAA 58.921 43.478 0.00 0.00 39.65 2.57
4554 4855 4.479158 AGAGGGTAGTGCCAAAAATGAAA 58.521 39.130 0.00 0.00 39.65 2.69
4555 4856 4.524328 AGAGGGTAGTGCCAAAAATGAAAG 59.476 41.667 0.00 0.00 39.65 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 8.450578 TCCATGCTATATTTACTTGAGTTTGG 57.549 34.615 0.00 0.00 0.00 3.28
227 230 0.807667 GCATCCTAGCATATCCCGCG 60.808 60.000 0.00 0.00 0.00 6.46
405 443 1.207329 GGTTAGGAGCACCTCGTGAAT 59.793 52.381 5.75 0.00 46.43 2.57
476 535 2.488087 AAGTCCGTCGCGCTAGCTTT 62.488 55.000 13.93 0.00 42.32 3.51
774 876 1.078848 AGGCAGATCAACGGTGCTC 60.079 57.895 0.00 0.00 37.37 4.26
930 1072 2.333069 GAGAGTGGATGGATGGATGGA 58.667 52.381 0.00 0.00 0.00 3.41
931 1073 1.350351 GGAGAGTGGATGGATGGATGG 59.650 57.143 0.00 0.00 0.00 3.51
932 1074 1.350351 GGGAGAGTGGATGGATGGATG 59.650 57.143 0.00 0.00 0.00 3.51
933 1075 1.061111 TGGGAGAGTGGATGGATGGAT 60.061 52.381 0.00 0.00 0.00 3.41
1091 1233 2.583593 GAGCAACCGGAGCTAGCG 60.584 66.667 22.50 0.00 43.58 4.26
1092 1234 1.227118 GAGAGCAACCGGAGCTAGC 60.227 63.158 22.50 6.62 43.58 3.42
1093 1235 1.064946 CGAGAGCAACCGGAGCTAG 59.935 63.158 22.50 14.48 43.58 3.42
1094 1236 3.197614 CGAGAGCAACCGGAGCTA 58.802 61.111 22.50 0.00 43.58 3.32
1101 1254 0.387565 GAGATCTCCCGAGAGCAACC 59.612 60.000 12.00 0.00 45.64 3.77
1120 1273 7.742556 AAAAGGAAGAAGAGATTTCAGTCAG 57.257 36.000 0.00 0.00 0.00 3.51
1121 1274 7.995488 AGAAAAAGGAAGAAGAGATTTCAGTCA 59.005 33.333 0.00 0.00 0.00 3.41
1122 1275 8.389779 AGAAAAAGGAAGAAGAGATTTCAGTC 57.610 34.615 0.00 0.00 0.00 3.51
1123 1276 8.217111 AGAGAAAAAGGAAGAAGAGATTTCAGT 58.783 33.333 0.00 0.00 0.00 3.41
1148 1301 0.527113 TGGCGCCAATTTCATCACAG 59.473 50.000 30.74 0.00 0.00 3.66
1150 1303 0.179129 CCTGGCGCCAATTTCATCAC 60.179 55.000 32.09 0.00 0.00 3.06
1273 1426 2.169352 AGCAAGGAAGAGTGCATACGAT 59.831 45.455 0.00 0.00 43.42 3.73
1274 1427 1.550524 AGCAAGGAAGAGTGCATACGA 59.449 47.619 0.00 0.00 43.42 3.43
1275 1428 1.929836 GAGCAAGGAAGAGTGCATACG 59.070 52.381 0.00 0.00 43.42 3.06
1276 1429 1.929836 CGAGCAAGGAAGAGTGCATAC 59.070 52.381 0.00 0.00 43.42 2.39
1277 1430 1.740380 GCGAGCAAGGAAGAGTGCATA 60.740 52.381 0.00 0.00 43.42 3.14
1278 1431 1.023513 GCGAGCAAGGAAGAGTGCAT 61.024 55.000 0.00 0.00 43.42 3.96
1292 1449 0.441921 GCTGACAAGAGAAAGCGAGC 59.558 55.000 0.00 0.00 0.00 5.03
1357 1514 4.568359 CAGCTAGTCACAGATACGCAAATT 59.432 41.667 0.00 0.00 0.00 1.82
1403 1560 2.536725 CACCTGTAGTGCAGCACTG 58.463 57.895 34.25 21.26 45.01 3.66
1473 1631 3.006940 TGAAGAATTAGCACGCGGAATT 58.993 40.909 12.47 10.51 0.00 2.17
1495 1653 0.764752 ACTAGCCTGGGCAGTATCCC 60.765 60.000 14.39 0.00 46.73 3.85
1584 1746 8.850007 AATCTCATCATCCATGATAACTGAAG 57.150 34.615 1.64 0.00 45.23 3.02
1598 1760 6.211515 GGCACCATTGTTTAATCTCATCATC 58.788 40.000 0.00 0.00 0.00 2.92
1680 1842 3.447586 CGGTGGGAAGAGTTAGATTCTCA 59.552 47.826 0.00 0.00 33.55 3.27
1692 1854 1.985662 ACGGTATGCGGTGGGAAGA 60.986 57.895 0.00 0.00 0.00 2.87
1740 1902 7.199541 ACTAGTATATGTGCTCGTTTCGTAT 57.800 36.000 0.00 0.00 0.00 3.06
1789 1952 7.037873 ACCAAAAAGCCGACCTCCATATATATA 60.038 37.037 0.00 0.00 0.00 0.86
1932 2095 0.110056 CACAACGCTGCAACAGATCC 60.110 55.000 0.00 0.00 32.44 3.36
1956 2119 0.530744 ACCGCTCAAACGCAGATAGA 59.469 50.000 0.00 0.00 0.00 1.98
1963 2126 1.003851 TATGCTAACCGCTCAAACGC 58.996 50.000 0.00 0.00 40.11 4.84
1987 2156 2.423577 AGACGCAGACATACCCAAAAC 58.576 47.619 0.00 0.00 0.00 2.43
1995 2164 2.096980 CGACTTGGTAGACGCAGACATA 59.903 50.000 0.00 0.00 33.25 2.29
2000 2169 2.095364 AGTAACGACTTGGTAGACGCAG 60.095 50.000 0.00 0.00 42.06 5.18
2136 2305 4.218417 AGGACATGTACAAATCCAGCAAAC 59.782 41.667 23.70 2.96 33.33 2.93
2195 2368 6.158598 TGTTCAAATCAAGCTGCTTTTATCC 58.841 36.000 13.10 0.00 0.00 2.59
2455 2643 3.539604 AGCTTCAATTGAGAAGATCCCG 58.460 45.455 8.41 0.00 46.18 5.14
2612 2800 0.524862 GCATGGTTTCCTGCAGTCAG 59.475 55.000 13.81 0.00 38.28 3.51
2664 2852 6.381707 ACATTCCTCTAGAGACCCTTACTTTC 59.618 42.308 21.76 0.00 0.00 2.62
2768 2956 9.860898 AATAATGAGCAAAAAGGATCTGTTTAC 57.139 29.630 0.00 0.00 0.00 2.01
2843 3031 4.990426 ACAAACAATTGCAGGATAACAAGC 59.010 37.500 5.05 0.00 40.34 4.01
3003 3223 4.554292 AGTAGCATGACTATCGCAGAATG 58.446 43.478 0.00 0.00 43.58 2.67
3005 3225 5.966742 ATAGTAGCATGACTATCGCAGAA 57.033 39.130 0.00 0.00 43.58 3.02
3072 3329 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3073 3330 6.070194 ACATTCTTATATTATGGGACGGAGGG 60.070 42.308 0.00 0.00 0.00 4.30
3074 3331 6.947464 ACATTCTTATATTATGGGACGGAGG 58.053 40.000 0.00 0.00 0.00 4.30
3075 3332 8.848474 AAACATTCTTATATTATGGGACGGAG 57.152 34.615 0.00 0.00 0.00 4.63
3076 3333 9.635404 AAAAACATTCTTATATTATGGGACGGA 57.365 29.630 0.00 0.00 0.00 4.69
3077 3334 9.677567 CAAAAACATTCTTATATTATGGGACGG 57.322 33.333 0.00 0.00 0.00 4.79
3103 3360 7.807687 ACGTTTATGACACTACACTAATGTC 57.192 36.000 0.00 0.00 42.54 3.06
3104 3361 8.086522 AGAACGTTTATGACACTACACTAATGT 58.913 33.333 0.46 0.00 43.30 2.71
3105 3362 8.462143 AGAACGTTTATGACACTACACTAATG 57.538 34.615 0.46 0.00 0.00 1.90
3118 3375 9.414295 CGTCCCATAATATAAGAACGTTTATGA 57.586 33.333 0.46 0.00 33.93 2.15
3119 3376 8.653338 CCGTCCCATAATATAAGAACGTTTATG 58.347 37.037 0.46 4.64 32.57 1.90
3120 3377 8.587608 TCCGTCCCATAATATAAGAACGTTTAT 58.412 33.333 0.46 0.00 0.00 1.40
3121 3378 7.950512 TCCGTCCCATAATATAAGAACGTTTA 58.049 34.615 0.46 0.00 0.00 2.01
3122 3379 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3123 3380 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3124 3381 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3125 3382 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3126 3383 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3127 3384 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3128 3385 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3129 3386 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3130 3387 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3131 3388 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3132 3389 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3133 3390 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
3134 3391 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
3135 3392 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
3136 3393 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
3137 3394 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
3138 3395 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
3139 3396 2.305858 ATATGTACTCCCTCCGTCCC 57.694 55.000 0.00 0.00 0.00 4.46
3140 3397 4.660168 TCTAATATGTACTCCCTCCGTCC 58.340 47.826 0.00 0.00 0.00 4.79
3141 3398 6.489361 TCTTTCTAATATGTACTCCCTCCGTC 59.511 42.308 0.00 0.00 0.00 4.79
3142 3399 6.264970 GTCTTTCTAATATGTACTCCCTCCGT 59.735 42.308 0.00 0.00 0.00 4.69
3143 3400 6.490721 AGTCTTTCTAATATGTACTCCCTCCG 59.509 42.308 0.00 0.00 0.00 4.63
3144 3401 7.842887 AGTCTTTCTAATATGTACTCCCTCC 57.157 40.000 0.00 0.00 0.00 4.30
3145 3402 9.752961 GAAAGTCTTTCTAATATGTACTCCCTC 57.247 37.037 16.64 0.00 36.73 4.30
3146 3403 9.268282 TGAAAGTCTTTCTAATATGTACTCCCT 57.732 33.333 22.69 0.00 40.32 4.20
3147 3404 9.315525 GTGAAAGTCTTTCTAATATGTACTCCC 57.684 37.037 22.69 0.00 40.32 4.30
3148 3405 9.871238 TGTGAAAGTCTTTCTAATATGTACTCC 57.129 33.333 22.69 0.00 40.32 3.85
3150 3407 9.877178 CCTGTGAAAGTCTTTCTAATATGTACT 57.123 33.333 22.69 0.00 40.32 2.73
3151 3408 8.604890 GCCTGTGAAAGTCTTTCTAATATGTAC 58.395 37.037 22.69 12.24 40.32 2.90
3152 3409 8.318412 TGCCTGTGAAAGTCTTTCTAATATGTA 58.682 33.333 22.69 6.79 40.32 2.29
3153 3410 7.168219 TGCCTGTGAAAGTCTTTCTAATATGT 58.832 34.615 22.69 0.00 40.32 2.29
3154 3411 7.615582 TGCCTGTGAAAGTCTTTCTAATATG 57.384 36.000 22.69 10.03 40.32 1.78
3170 3427 8.405531 GCTTAACTAATTTTATCATGCCTGTGA 58.594 33.333 0.00 0.00 0.00 3.58
3591 3855 5.183904 GGATAGATCACAAATATGCCCAACC 59.816 44.000 0.00 0.00 0.00 3.77
3643 3909 3.780294 AGTGCCTCCTGACATAATAACCA 59.220 43.478 0.00 0.00 0.00 3.67
3846 4119 2.230508 AGAACACATGCTGGAATGCAAG 59.769 45.455 0.00 0.00 46.61 4.01
3850 4123 3.504906 ACTTCAGAACACATGCTGGAATG 59.495 43.478 0.00 0.00 33.05 2.67
3851 4124 3.759581 ACTTCAGAACACATGCTGGAAT 58.240 40.909 0.00 0.00 33.05 3.01
3862 4136 5.277297 CGCACATTCAGTTAACTTCAGAACA 60.277 40.000 5.07 0.00 0.00 3.18
3863 4137 5.050363 TCGCACATTCAGTTAACTTCAGAAC 60.050 40.000 5.07 0.00 0.00 3.01
3865 4139 4.627058 TCGCACATTCAGTTAACTTCAGA 58.373 39.130 5.07 0.00 0.00 3.27
3872 4146 3.038788 TGCTCTCGCACATTCAGTTAA 57.961 42.857 0.00 0.00 42.25 2.01
3900 4174 6.455647 ACGTCACAAATGATAGACTTTCTCA 58.544 36.000 0.00 0.00 37.14 3.27
3903 4185 6.366332 ACAGACGTCACAAATGATAGACTTTC 59.634 38.462 19.50 0.00 37.14 2.62
3911 4193 4.816385 ACTGAAACAGACGTCACAAATGAT 59.184 37.500 19.50 0.00 34.62 2.45
3918 4200 3.670203 CAACAACTGAAACAGACGTCAC 58.330 45.455 19.50 4.23 35.18 3.67
3921 4203 2.080693 TGCAACAACTGAAACAGACGT 58.919 42.857 5.76 0.00 35.18 4.34
3922 4204 2.823196 TGCAACAACTGAAACAGACG 57.177 45.000 5.76 0.00 35.18 4.18
3960 4242 3.162202 CACTCCTGTGATGAGTAGCTG 57.838 52.381 0.00 0.00 46.55 4.24
3972 4254 7.621683 AGAGAAATATAAACTCCTCACTCCTGT 59.378 37.037 0.00 0.00 0.00 4.00
3996 4278 7.178628 GTGTATAGCCATTCTACCTTCCATAGA 59.821 40.741 0.00 0.00 0.00 1.98
3997 4279 7.179338 AGTGTATAGCCATTCTACCTTCCATAG 59.821 40.741 0.00 0.00 0.00 2.23
3998 4280 7.016914 AGTGTATAGCCATTCTACCTTCCATA 58.983 38.462 0.00 0.00 0.00 2.74
3999 4281 5.846714 AGTGTATAGCCATTCTACCTTCCAT 59.153 40.000 0.00 0.00 0.00 3.41
4000 4282 5.070446 CAGTGTATAGCCATTCTACCTTCCA 59.930 44.000 0.00 0.00 0.00 3.53
4001 4283 5.070580 ACAGTGTATAGCCATTCTACCTTCC 59.929 44.000 0.00 0.00 0.00 3.46
4002 4284 6.163135 ACAGTGTATAGCCATTCTACCTTC 57.837 41.667 0.00 0.00 0.00 3.46
4003 4285 5.661312 TGACAGTGTATAGCCATTCTACCTT 59.339 40.000 0.00 0.00 0.00 3.50
4004 4286 5.208890 TGACAGTGTATAGCCATTCTACCT 58.791 41.667 0.00 0.00 0.00 3.08
4005 4287 5.531122 TGACAGTGTATAGCCATTCTACC 57.469 43.478 0.00 0.00 0.00 3.18
4006 4288 7.210174 TCATTGACAGTGTATAGCCATTCTAC 58.790 38.462 0.00 0.00 0.00 2.59
4007 4289 7.360113 TCATTGACAGTGTATAGCCATTCTA 57.640 36.000 0.00 0.00 0.00 2.10
4008 4290 6.239217 TCATTGACAGTGTATAGCCATTCT 57.761 37.500 0.00 0.00 0.00 2.40
4009 4291 6.707608 TCATCATTGACAGTGTATAGCCATTC 59.292 38.462 0.00 0.00 0.00 2.67
4010 4292 6.594744 TCATCATTGACAGTGTATAGCCATT 58.405 36.000 0.00 0.00 0.00 3.16
4041 4323 5.940617 TGACCATAATTTCATAGGACCTGG 58.059 41.667 3.53 0.00 0.00 4.45
4042 4324 7.720957 TCAATGACCATAATTTCATAGGACCTG 59.279 37.037 3.53 0.00 31.99 4.00
4052 4340 9.438291 CGATGTACTTTCAATGACCATAATTTC 57.562 33.333 0.00 0.00 0.00 2.17
4060 4348 7.772332 ATAAGTCGATGTACTTTCAATGACC 57.228 36.000 0.00 0.00 40.20 4.02
4066 4354 7.197703 TGCGAATATAAGTCGATGTACTTTCA 58.802 34.615 12.07 0.00 41.02 2.69
4100 4388 9.968870 CCTTATCTTAGGTCTAATTCTGTGTAC 57.031 37.037 0.00 0.00 0.00 2.90
4101 4389 8.639761 GCCTTATCTTAGGTCTAATTCTGTGTA 58.360 37.037 0.00 0.00 37.63 2.90
4102 4390 7.419172 GGCCTTATCTTAGGTCTAATTCTGTGT 60.419 40.741 0.00 0.00 36.95 3.72
4103 4391 6.931840 GGCCTTATCTTAGGTCTAATTCTGTG 59.068 42.308 0.00 0.00 36.95 3.66
4104 4392 6.239345 CGGCCTTATCTTAGGTCTAATTCTGT 60.239 42.308 0.00 0.00 37.78 3.41
4105 4393 6.159988 CGGCCTTATCTTAGGTCTAATTCTG 58.840 44.000 0.00 0.00 37.78 3.02
4106 4394 5.839606 ACGGCCTTATCTTAGGTCTAATTCT 59.160 40.000 0.00 0.00 37.78 2.40
4107 4395 5.927115 CACGGCCTTATCTTAGGTCTAATTC 59.073 44.000 0.00 0.00 37.78 2.17
4109 4397 5.145564 TCACGGCCTTATCTTAGGTCTAAT 58.854 41.667 0.00 0.00 37.78 1.73
4110 4398 4.539726 TCACGGCCTTATCTTAGGTCTAA 58.460 43.478 0.00 0.00 37.78 2.10
4111 4399 4.142790 CTCACGGCCTTATCTTAGGTCTA 58.857 47.826 0.00 0.00 37.78 2.59
4112 4400 2.959707 CTCACGGCCTTATCTTAGGTCT 59.040 50.000 0.00 0.00 37.78 3.85
4113 4401 2.546162 GCTCACGGCCTTATCTTAGGTC 60.546 54.545 0.00 0.00 37.63 3.85
4114 4402 1.413077 GCTCACGGCCTTATCTTAGGT 59.587 52.381 0.00 0.00 37.63 3.08
4115 4403 1.412710 TGCTCACGGCCTTATCTTAGG 59.587 52.381 0.00 0.00 40.92 2.69
4116 4404 2.890808 TGCTCACGGCCTTATCTTAG 57.109 50.000 0.00 0.00 40.92 2.18
4117 4405 2.698274 TGATGCTCACGGCCTTATCTTA 59.302 45.455 0.00 0.00 40.92 2.10
4121 4409 1.123077 TCTGATGCTCACGGCCTTAT 58.877 50.000 0.00 0.00 40.92 1.73
4163 4456 9.762933 TTACTTACGGTTAAGAGTTTGTGTTAT 57.237 29.630 0.21 0.00 37.49 1.89
4181 4482 6.607689 TGCATTCCTTTCATGTTTACTTACG 58.392 36.000 0.00 0.00 0.00 3.18
4182 4483 8.986477 AATGCATTCCTTTCATGTTTACTTAC 57.014 30.769 5.99 0.00 0.00 2.34
4203 4504 3.623510 GGGTTCAGAGTGCTACTAAATGC 59.376 47.826 0.00 0.00 0.00 3.56
4250 4551 8.719560 TGTGTTTTATCACGGCTGTAAATATA 57.280 30.769 0.00 0.00 40.74 0.86
4251 4552 7.335924 ACTGTGTTTTATCACGGCTGTAAATAT 59.664 33.333 0.00 0.00 45.41 1.28
4278 4579 8.814931 TCCAAATTCTTGTGGAAATGAATACAT 58.185 29.630 0.00 0.00 41.02 2.29
4331 4632 7.254852 TGGAAAAATATCTTGCATTACGGAAC 58.745 34.615 0.00 0.00 0.00 3.62
4332 4633 7.397892 TGGAAAAATATCTTGCATTACGGAA 57.602 32.000 0.00 0.00 0.00 4.30
4333 4634 7.397892 TTGGAAAAATATCTTGCATTACGGA 57.602 32.000 0.00 0.00 0.00 4.69
4334 4635 6.198966 GCTTGGAAAAATATCTTGCATTACGG 59.801 38.462 0.00 0.00 0.00 4.02
4335 4636 6.974622 AGCTTGGAAAAATATCTTGCATTACG 59.025 34.615 0.00 0.00 0.00 3.18
4336 4637 9.971922 ATAGCTTGGAAAAATATCTTGCATTAC 57.028 29.630 0.00 0.00 0.00 1.89
4340 4641 8.632679 CCTAATAGCTTGGAAAAATATCTTGCA 58.367 33.333 0.00 0.00 0.00 4.08
4341 4642 8.633561 ACCTAATAGCTTGGAAAAATATCTTGC 58.366 33.333 0.00 0.00 0.00 4.01
4348 4649 9.833917 GAGTACTACCTAATAGCTTGGAAAAAT 57.166 33.333 0.00 0.00 33.73 1.82
4349 4650 8.262933 GGAGTACTACCTAATAGCTTGGAAAAA 58.737 37.037 0.00 0.00 33.73 1.94
4350 4651 7.147602 GGGAGTACTACCTAATAGCTTGGAAAA 60.148 40.741 17.74 0.00 33.73 2.29
4351 4652 6.325804 GGGAGTACTACCTAATAGCTTGGAAA 59.674 42.308 17.74 0.00 33.73 3.13
4352 4653 5.837438 GGGAGTACTACCTAATAGCTTGGAA 59.163 44.000 17.74 0.00 33.73 3.53
4353 4654 5.135705 AGGGAGTACTACCTAATAGCTTGGA 59.864 44.000 26.28 0.00 43.72 3.53
4354 4655 5.395611 AGGGAGTACTACCTAATAGCTTGG 58.604 45.833 26.28 0.00 43.72 3.61
4355 4656 6.207810 CAGAGGGAGTACTACCTAATAGCTTG 59.792 46.154 27.44 12.13 46.12 4.01
4356 4657 6.126127 ACAGAGGGAGTACTACCTAATAGCTT 60.126 42.308 27.44 1.73 46.12 3.74
4357 4658 5.373257 ACAGAGGGAGTACTACCTAATAGCT 59.627 44.000 27.44 16.07 46.12 3.32
4358 4659 5.633117 ACAGAGGGAGTACTACCTAATAGC 58.367 45.833 27.44 13.93 46.12 2.97
4359 4660 9.287373 CTTTACAGAGGGAGTACTACCTAATAG 57.713 40.741 27.44 17.84 46.12 1.73
4360 4661 9.007494 TCTTTACAGAGGGAGTACTACCTAATA 57.993 37.037 27.44 15.80 46.12 0.98
4361 4662 7.880623 TCTTTACAGAGGGAGTACTACCTAAT 58.119 38.462 27.44 15.74 46.12 1.73
4362 4663 7.276088 TCTTTACAGAGGGAGTACTACCTAA 57.724 40.000 27.44 14.60 46.12 2.69
4363 4664 6.898171 TCTTTACAGAGGGAGTACTACCTA 57.102 41.667 27.44 8.58 46.12 3.08
4365 4666 6.847421 TTTCTTTACAGAGGGAGTACTACC 57.153 41.667 17.30 17.30 0.00 3.18
4371 4672 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
4372 4673 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
4373 4674 7.434492 CGCTCTTATATTTCTTTACAGAGGGA 58.566 38.462 4.76 0.00 40.49 4.20
4374 4675 6.146347 GCGCTCTTATATTTCTTTACAGAGGG 59.854 42.308 0.00 0.00 40.81 4.30
4375 4676 6.926272 AGCGCTCTTATATTTCTTTACAGAGG 59.074 38.462 2.64 0.00 0.00 3.69
4376 4677 7.938563 AGCGCTCTTATATTTCTTTACAGAG 57.061 36.000 2.64 0.00 0.00 3.35
4377 4678 7.979537 TGAAGCGCTCTTATATTTCTTTACAGA 59.020 33.333 12.06 0.00 31.48 3.41
4378 4679 8.058915 GTGAAGCGCTCTTATATTTCTTTACAG 58.941 37.037 12.06 0.00 31.48 2.74
4379 4680 7.011109 GGTGAAGCGCTCTTATATTTCTTTACA 59.989 37.037 12.06 0.00 31.48 2.41
4380 4681 7.345943 GGTGAAGCGCTCTTATATTTCTTTAC 58.654 38.462 12.06 0.00 31.48 2.01
4381 4682 6.482308 GGGTGAAGCGCTCTTATATTTCTTTA 59.518 38.462 12.06 0.00 31.48 1.85
4382 4683 5.297029 GGGTGAAGCGCTCTTATATTTCTTT 59.703 40.000 12.06 0.00 31.48 2.52
4383 4684 4.816925 GGGTGAAGCGCTCTTATATTTCTT 59.183 41.667 12.06 0.00 31.48 2.52
4384 4685 4.101741 AGGGTGAAGCGCTCTTATATTTCT 59.898 41.667 12.06 0.00 35.22 2.52
4385 4686 4.381411 AGGGTGAAGCGCTCTTATATTTC 58.619 43.478 12.06 1.69 35.22 2.17
4386 4687 4.423625 AGGGTGAAGCGCTCTTATATTT 57.576 40.909 12.06 0.00 35.22 1.40
4387 4688 4.130118 CAAGGGTGAAGCGCTCTTATATT 58.870 43.478 12.06 0.00 39.65 1.28
4388 4689 3.134804 ACAAGGGTGAAGCGCTCTTATAT 59.865 43.478 12.06 0.00 39.65 0.86
4389 4690 2.500098 ACAAGGGTGAAGCGCTCTTATA 59.500 45.455 12.06 0.00 39.65 0.98
4390 4691 1.279271 ACAAGGGTGAAGCGCTCTTAT 59.721 47.619 12.06 0.00 39.65 1.73
4391 4692 0.685097 ACAAGGGTGAAGCGCTCTTA 59.315 50.000 12.06 0.00 39.65 2.10
4392 4693 0.603975 GACAAGGGTGAAGCGCTCTT 60.604 55.000 12.06 6.40 39.65 2.85
4393 4694 1.004440 GACAAGGGTGAAGCGCTCT 60.004 57.895 12.06 0.00 39.65 4.09
4394 4695 2.383527 CGACAAGGGTGAAGCGCTC 61.384 63.158 12.06 4.99 39.65 5.03
4395 4696 2.357517 CGACAAGGGTGAAGCGCT 60.358 61.111 2.64 2.64 42.61 5.92
4396 4697 4.090057 GCGACAAGGGTGAAGCGC 62.090 66.667 0.00 0.00 36.67 5.92
4397 4698 3.423154 GGCGACAAGGGTGAAGCG 61.423 66.667 0.00 0.00 33.61 4.68
4398 4699 3.423154 CGGCGACAAGGGTGAAGC 61.423 66.667 0.00 0.00 0.00 3.86
4399 4700 0.673644 ATTCGGCGACAAGGGTGAAG 60.674 55.000 10.16 0.00 0.00 3.02
4400 4701 0.250553 AATTCGGCGACAAGGGTGAA 60.251 50.000 10.16 0.00 0.00 3.18
4401 4702 0.250553 AAATTCGGCGACAAGGGTGA 60.251 50.000 10.16 0.00 0.00 4.02
4402 4703 0.109781 CAAATTCGGCGACAAGGGTG 60.110 55.000 10.16 0.00 0.00 4.61
4403 4704 1.862602 GCAAATTCGGCGACAAGGGT 61.863 55.000 10.16 0.00 0.00 4.34
4404 4705 1.154035 GCAAATTCGGCGACAAGGG 60.154 57.895 10.16 0.00 0.00 3.95
4405 4706 0.454957 CAGCAAATTCGGCGACAAGG 60.455 55.000 10.16 0.66 36.08 3.61
4406 4707 0.516877 TCAGCAAATTCGGCGACAAG 59.483 50.000 10.16 0.70 36.08 3.16
4407 4708 0.516877 CTCAGCAAATTCGGCGACAA 59.483 50.000 10.16 0.00 36.08 3.18
4408 4709 1.911293 GCTCAGCAAATTCGGCGACA 61.911 55.000 10.16 0.97 36.08 4.35
4409 4710 1.226128 GCTCAGCAAATTCGGCGAC 60.226 57.895 10.16 0.00 36.08 5.19
4410 4711 1.670730 TGCTCAGCAAATTCGGCGA 60.671 52.632 4.99 4.99 34.76 5.54
4411 4712 1.512734 GTGCTCAGCAAATTCGGCG 60.513 57.895 0.00 0.00 41.47 6.46
4412 4713 0.171903 ATGTGCTCAGCAAATTCGGC 59.828 50.000 0.00 0.00 41.47 5.54
4413 4714 1.469703 TGATGTGCTCAGCAAATTCGG 59.530 47.619 3.06 0.00 41.47 4.30
4414 4715 2.905959 TGATGTGCTCAGCAAATTCG 57.094 45.000 3.06 0.00 41.47 3.34
4419 4720 5.005740 AGAAGTATTTGATGTGCTCAGCAA 58.994 37.500 14.87 14.87 46.12 3.91
4420 4721 4.582869 AGAAGTATTTGATGTGCTCAGCA 58.417 39.130 2.00 2.00 38.24 4.41
4421 4722 5.557891 AAGAAGTATTTGATGTGCTCAGC 57.442 39.130 0.00 0.00 34.68 4.26
4422 4723 6.307318 GCAAAAGAAGTATTTGATGTGCTCAG 59.693 38.462 3.37 0.00 39.56 3.35
4423 4724 6.016024 AGCAAAAGAAGTATTTGATGTGCTCA 60.016 34.615 3.37 0.00 39.56 4.26
4424 4725 6.385033 AGCAAAAGAAGTATTTGATGTGCTC 58.615 36.000 3.37 0.00 39.56 4.26
4425 4726 6.336842 AGCAAAAGAAGTATTTGATGTGCT 57.663 33.333 3.37 0.00 39.56 4.40
4426 4727 7.530010 TCTAGCAAAAGAAGTATTTGATGTGC 58.470 34.615 3.37 0.00 39.56 4.57
4427 4728 9.897744 TTTCTAGCAAAAGAAGTATTTGATGTG 57.102 29.630 3.37 0.00 39.56 3.21
4436 4737 9.959721 ACCAGATTATTTCTAGCAAAAGAAGTA 57.040 29.630 0.00 0.00 36.85 2.24
4437 4738 8.870075 ACCAGATTATTTCTAGCAAAAGAAGT 57.130 30.769 0.00 0.00 36.85 3.01
4442 4743 9.801873 GCATAAACCAGATTATTTCTAGCAAAA 57.198 29.630 0.00 0.00 31.77 2.44
4443 4744 8.413229 GGCATAAACCAGATTATTTCTAGCAAA 58.587 33.333 0.00 0.00 31.77 3.68
4444 4745 7.014230 GGGCATAAACCAGATTATTTCTAGCAA 59.986 37.037 0.00 0.00 31.77 3.91
4445 4746 6.490040 GGGCATAAACCAGATTATTTCTAGCA 59.510 38.462 0.00 0.00 31.77 3.49
4446 4747 6.490040 TGGGCATAAACCAGATTATTTCTAGC 59.510 38.462 0.00 0.00 33.23 3.42
4447 4748 8.352942 GTTGGGCATAAACCAGATTATTTCTAG 58.647 37.037 0.00 0.00 39.57 2.43
4448 4749 7.012894 CGTTGGGCATAAACCAGATTATTTCTA 59.987 37.037 0.00 0.00 39.57 2.10
4449 4750 6.183360 CGTTGGGCATAAACCAGATTATTTCT 60.183 38.462 0.00 0.00 39.57 2.52
4450 4751 5.977129 CGTTGGGCATAAACCAGATTATTTC 59.023 40.000 0.00 0.00 39.57 2.17
4451 4752 5.654650 TCGTTGGGCATAAACCAGATTATTT 59.345 36.000 0.00 0.00 39.57 1.40
4452 4753 5.197451 TCGTTGGGCATAAACCAGATTATT 58.803 37.500 0.00 0.00 39.57 1.40
4453 4754 4.787551 TCGTTGGGCATAAACCAGATTAT 58.212 39.130 0.00 0.00 39.57 1.28
4454 4755 4.223556 TCGTTGGGCATAAACCAGATTA 57.776 40.909 0.00 0.00 39.57 1.75
4455 4756 3.080300 TCGTTGGGCATAAACCAGATT 57.920 42.857 0.00 0.00 39.57 2.40
4456 4757 2.799126 TCGTTGGGCATAAACCAGAT 57.201 45.000 0.00 0.00 39.57 2.90
4457 4758 2.039216 TCTTCGTTGGGCATAAACCAGA 59.961 45.455 0.00 0.00 39.57 3.86
4458 4759 2.432444 TCTTCGTTGGGCATAAACCAG 58.568 47.619 0.00 0.00 39.57 4.00
4459 4760 2.554893 GTTCTTCGTTGGGCATAAACCA 59.445 45.455 0.00 0.00 35.88 3.67
4460 4761 2.554893 TGTTCTTCGTTGGGCATAAACC 59.445 45.455 0.00 0.00 0.00 3.27
4461 4762 3.252458 ACTGTTCTTCGTTGGGCATAAAC 59.748 43.478 0.00 0.00 0.00 2.01
4462 4763 3.482436 ACTGTTCTTCGTTGGGCATAAA 58.518 40.909 0.00 0.00 0.00 1.40
4463 4764 3.134574 ACTGTTCTTCGTTGGGCATAA 57.865 42.857 0.00 0.00 0.00 1.90
4464 4765 2.851263 ACTGTTCTTCGTTGGGCATA 57.149 45.000 0.00 0.00 0.00 3.14
4465 4766 2.423577 GTACTGTTCTTCGTTGGGCAT 58.576 47.619 0.00 0.00 0.00 4.40
4466 4767 1.870580 CGTACTGTTCTTCGTTGGGCA 60.871 52.381 0.00 0.00 0.00 5.36
4467 4768 0.788391 CGTACTGTTCTTCGTTGGGC 59.212 55.000 0.00 0.00 0.00 5.36
4468 4769 2.144482 ACGTACTGTTCTTCGTTGGG 57.856 50.000 0.00 0.00 32.62 4.12
4469 4770 3.893720 ACTACGTACTGTTCTTCGTTGG 58.106 45.455 0.00 0.00 37.66 3.77
4470 4771 6.974677 TTTACTACGTACTGTTCTTCGTTG 57.025 37.500 0.00 0.00 37.66 4.10
4471 4772 9.677567 TTTATTTACTACGTACTGTTCTTCGTT 57.322 29.630 0.00 0.00 37.66 3.85
4472 4773 9.846248 ATTTATTTACTACGTACTGTTCTTCGT 57.154 29.630 0.00 0.00 39.74 3.85
4475 4776 9.294030 CGGATTTATTTACTACGTACTGTTCTT 57.706 33.333 0.00 0.00 0.00 2.52
4476 4777 8.677300 TCGGATTTATTTACTACGTACTGTTCT 58.323 33.333 0.00 0.00 0.00 3.01
4477 4778 8.737648 GTCGGATTTATTTACTACGTACTGTTC 58.262 37.037 0.00 0.00 0.00 3.18
4478 4779 8.243426 TGTCGGATTTATTTACTACGTACTGTT 58.757 33.333 0.00 0.00 0.00 3.16
4479 4780 7.761409 TGTCGGATTTATTTACTACGTACTGT 58.239 34.615 0.00 0.00 0.00 3.55
4480 4781 8.619146 TTGTCGGATTTATTTACTACGTACTG 57.381 34.615 0.00 0.00 0.00 2.74
4481 4782 9.638239 TTTTGTCGGATTTATTTACTACGTACT 57.362 29.630 0.00 0.00 0.00 2.73
4482 4783 9.675553 GTTTTGTCGGATTTATTTACTACGTAC 57.324 33.333 0.00 0.00 0.00 3.67
4483 4784 9.416794 TGTTTTGTCGGATTTATTTACTACGTA 57.583 29.630 0.00 0.00 0.00 3.57
4484 4785 8.309163 TGTTTTGTCGGATTTATTTACTACGT 57.691 30.769 0.00 0.00 0.00 3.57
4485 4786 7.901377 CCTGTTTTGTCGGATTTATTTACTACG 59.099 37.037 0.00 0.00 0.00 3.51
4486 4787 8.179615 CCCTGTTTTGTCGGATTTATTTACTAC 58.820 37.037 0.00 0.00 0.00 2.73
4487 4788 7.337436 CCCCTGTTTTGTCGGATTTATTTACTA 59.663 37.037 0.00 0.00 0.00 1.82
4488 4789 6.152154 CCCCTGTTTTGTCGGATTTATTTACT 59.848 38.462 0.00 0.00 0.00 2.24
4489 4790 6.151480 TCCCCTGTTTTGTCGGATTTATTTAC 59.849 38.462 0.00 0.00 0.00 2.01
4490 4791 6.151480 GTCCCCTGTTTTGTCGGATTTATTTA 59.849 38.462 0.00 0.00 0.00 1.40
4491 4792 5.047590 GTCCCCTGTTTTGTCGGATTTATTT 60.048 40.000 0.00 0.00 0.00 1.40
4492 4793 4.461431 GTCCCCTGTTTTGTCGGATTTATT 59.539 41.667 0.00 0.00 0.00 1.40
4493 4794 4.014406 GTCCCCTGTTTTGTCGGATTTAT 58.986 43.478 0.00 0.00 0.00 1.40
4494 4795 3.414269 GTCCCCTGTTTTGTCGGATTTA 58.586 45.455 0.00 0.00 0.00 1.40
4495 4796 2.235891 GTCCCCTGTTTTGTCGGATTT 58.764 47.619 0.00 0.00 0.00 2.17
4496 4797 1.880646 CGTCCCCTGTTTTGTCGGATT 60.881 52.381 0.00 0.00 0.00 3.01
4497 4798 0.321298 CGTCCCCTGTTTTGTCGGAT 60.321 55.000 0.00 0.00 0.00 4.18
4498 4799 1.070105 CGTCCCCTGTTTTGTCGGA 59.930 57.895 0.00 0.00 0.00 4.55
4499 4800 0.533308 TTCGTCCCCTGTTTTGTCGG 60.533 55.000 0.00 0.00 0.00 4.79
4500 4801 0.584876 GTTCGTCCCCTGTTTTGTCG 59.415 55.000 0.00 0.00 0.00 4.35
4501 4802 1.670791 TGTTCGTCCCCTGTTTTGTC 58.329 50.000 0.00 0.00 0.00 3.18
4502 4803 2.021457 CTTGTTCGTCCCCTGTTTTGT 58.979 47.619 0.00 0.00 0.00 2.83
4503 4804 1.336755 CCTTGTTCGTCCCCTGTTTTG 59.663 52.381 0.00 0.00 0.00 2.44
4504 4805 1.213430 TCCTTGTTCGTCCCCTGTTTT 59.787 47.619 0.00 0.00 0.00 2.43
4505 4806 0.841289 TCCTTGTTCGTCCCCTGTTT 59.159 50.000 0.00 0.00 0.00 2.83
4506 4807 1.064825 ATCCTTGTTCGTCCCCTGTT 58.935 50.000 0.00 0.00 0.00 3.16
4507 4808 0.324943 CATCCTTGTTCGTCCCCTGT 59.675 55.000 0.00 0.00 0.00 4.00
4508 4809 0.613260 TCATCCTTGTTCGTCCCCTG 59.387 55.000 0.00 0.00 0.00 4.45
4509 4810 0.905357 CTCATCCTTGTTCGTCCCCT 59.095 55.000 0.00 0.00 0.00 4.79
4510 4811 0.744771 GCTCATCCTTGTTCGTCCCC 60.745 60.000 0.00 0.00 0.00 4.81
4511 4812 0.036388 TGCTCATCCTTGTTCGTCCC 60.036 55.000 0.00 0.00 0.00 4.46
4512 4813 1.066858 TCTGCTCATCCTTGTTCGTCC 60.067 52.381 0.00 0.00 0.00 4.79
4513 4814 2.094494 TCTCTGCTCATCCTTGTTCGTC 60.094 50.000 0.00 0.00 0.00 4.20
4514 4815 1.895798 TCTCTGCTCATCCTTGTTCGT 59.104 47.619 0.00 0.00 0.00 3.85
4515 4816 2.538437 CTCTCTGCTCATCCTTGTTCG 58.462 52.381 0.00 0.00 0.00 3.95
4516 4817 2.419851 CCCTCTCTGCTCATCCTTGTTC 60.420 54.545 0.00 0.00 0.00 3.18
4517 4818 1.558756 CCCTCTCTGCTCATCCTTGTT 59.441 52.381 0.00 0.00 0.00 2.83
4518 4819 1.202330 CCCTCTCTGCTCATCCTTGT 58.798 55.000 0.00 0.00 0.00 3.16
4519 4820 1.202330 ACCCTCTCTGCTCATCCTTG 58.798 55.000 0.00 0.00 0.00 3.61
4520 4821 2.023501 ACTACCCTCTCTGCTCATCCTT 60.024 50.000 0.00 0.00 0.00 3.36
4521 4822 1.573376 ACTACCCTCTCTGCTCATCCT 59.427 52.381 0.00 0.00 0.00 3.24
4522 4823 1.686052 CACTACCCTCTCTGCTCATCC 59.314 57.143 0.00 0.00 0.00 3.51
4523 4824 1.068434 GCACTACCCTCTCTGCTCATC 59.932 57.143 0.00 0.00 0.00 2.92
4524 4825 1.118838 GCACTACCCTCTCTGCTCAT 58.881 55.000 0.00 0.00 0.00 2.90
4525 4826 0.972983 GGCACTACCCTCTCTGCTCA 60.973 60.000 0.00 0.00 0.00 4.26
4526 4827 0.972983 TGGCACTACCCTCTCTGCTC 60.973 60.000 0.00 0.00 37.83 4.26
4527 4828 0.545309 TTGGCACTACCCTCTCTGCT 60.545 55.000 0.00 0.00 37.83 4.24
4528 4829 0.324943 TTTGGCACTACCCTCTCTGC 59.675 55.000 0.00 0.00 37.83 4.26
4529 4830 2.859165 TTTTGGCACTACCCTCTCTG 57.141 50.000 0.00 0.00 37.83 3.35
4530 4831 3.330701 TCATTTTTGGCACTACCCTCTCT 59.669 43.478 0.00 0.00 37.83 3.10
4531 4832 3.686016 TCATTTTTGGCACTACCCTCTC 58.314 45.455 0.00 0.00 37.83 3.20
4532 4833 3.806949 TCATTTTTGGCACTACCCTCT 57.193 42.857 0.00 0.00 37.83 3.69
4533 4834 4.809673 CTTTCATTTTTGGCACTACCCTC 58.190 43.478 0.00 0.00 37.83 4.30
4534 4835 4.871933 CTTTCATTTTTGGCACTACCCT 57.128 40.909 0.00 0.00 37.83 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.