>input_sequence_31020
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---------------------ATGGGGTGGAAGGCCGCGGAGAAGCTCATCAGGCACTGGAAGATCCTCCGCGGCGACAA
CGTGCGCGGCATCTCCGTCCCCTCCACACCCCCGCTA-----------GCTCCGGTTGCTCTCGGGAGATCTCTGACTGA
AATCTCTTCTTCCTTTTTCTCTGTGATGAAATTGGCGCCAGGTGATGATCATAAGGGGCAAGGACAAGGGGGAGAGCGGG
CTGATCAAGCGGGTCATCCGGTCGCAGAATCGCGTCATCGTCGAGGGCAAGAATCTGGTAATATAATCGTA----TGCAC
TCTTCCTTGCTCGCTTTCTCTTGTCAGCTATTGCTTAGGATTCGGTGCTACTGTTTGGTGTCATGGGAGTATCAATTTGC
GTATCTGTGACTAGCTGTATGCAATGTGATACGTGCTCTCAGTGCTGCACTACAGGTGTTTGTCGAAATTCCCAGTCCAC
TGAAAGTGAA-TGGGCAACCTGGCTGCGTTAATTCCGCGTGCTAATTCTTCAGGGATACTGCCCAGGCTAGT-TTGTAGC
TGCTATGCTGCGCCTGCACAGATGTTATTTGGTGATTACTGCAACAGAGGAT---TTTTTTTCCCCTTCAGTTATCATGG
ATGATGAGATTAAACAATGGTGCCCAGGAGGAAAATTCCCACTGGGATATCATCTGTAAGAATATAAATCTGTAAAGTAA
ATGAGAATCTAACTCTTCCCACCGCATACCGTGCATCCATCATAACATAAGAATACCTGAAATACGAAACGAGCACATAT
-ACTAGTAGGATGTTTGCCTGAGTGCATCATTATATATATGGAGGTCGGCTTTTTGGTCAAATCTTGGAGAGCTCAAGCA
ATACAAGTGTCACTTAAGGCGTGTTTGAAAGGCTGGAGGTGTTAGGCCTAATCCATTAAAATGGTAGGGAAAGGGGACCA
AAACAACCCTGGCAGGATCTGTTGCAGCGTTGTGCGTGTCTATCTGCGTTTGAGCGGTTAGCATA------TCCCGTTTT
GGGTATGTCTGCGTCTACCAAGTCGTTACTGTGCTATACATACTTATACTACAATGTCCCTCACTCTGTTGTTTGTTTAC
TTTTAGTTAATTGTCAAACTCACAATGAGATGCCTTAAAAAACTGATAATAAGACCATGCAATGGTTTGCTGGATTTGTA
CATGTCCTAAGCCCATAACAAACAAATGC----TGAATGACTCAGTTGGATAAAAGCAGCTTGATTTGAACATGGTGAGG
AAGTGACTGTAGTGAATATTGAACAGGAACTGTGAACTGCACAATGTTTGTCTTTCTACATCTTTGTATATCTACTGTAA
GATGTTGCATGTTTATGGGGGATACTGGGTAACAGGACAATTGCAAC---------------GTTTATGTGTTTCTCTTG
TAATGAAAAATCACTTAGTAATTTGTATGCTGACATATTTTCAGGTTAAGAAACATATTAAGCAAGGGGAAGGACAAACA
GGCGGGATCTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTACAAGTAATTGATCCAGTCACCGGGTATGATACTTT
TGGCCATCTTTTGATACCGTTATTCTCTAGAGATACAGTTTTTATTTGTCTACATACTAAAAATATATTTGTCAACATTC
TGACTGCAGGAAACCATGCAAGACTACATACAAGTATTTGCCAGATGGGACGAAAGTAAGGGTCTCTAGAGGAATGTATG
CGTCTGGTGCTGTCATACCTCGGCCAGAAATTTTGAAGGAGAGAAAAAAACCGAGACCCACATCTCGTATGTTCCGTAAA
CAGATCCTTTTTGCTCATTATTAGTTGCTTTTGAAGTGCATAATTATACTGTTCAGAGAAGAATTAACTGGCTTGTTATC
CTGCAATTGTTTGTGAACATCTGATTTTTTCATGATGCCTGGATTATAATTGAGCTAACACTAATCTGACCTCCATCTAA
AATTAGGAGAGCAAGCCAATCTCAACTTAATACAACTTATTTTTT--------------------------------TTC
ATAATTTTGTCTCGTGTTGCTGCAT-------------------------------------TCTGCGATAGTCATGCTA
CTATAGGTGTTTCTGCTAATGATGTTTGGCTTGTTTGCTGCATTCTACTCCCTCCGTCCCATAATATAAGAATGTTTTTG
ACATTAGTGTAGTGTCATAAACGTTCTTATATTATGGGACGGAGGGAGTACATATTAGAAAGACTTTCACAGGCATGATA
AAATTAGTTAAGCAATA----GTAAAATGCGCAGAATAAATTCTGATGCTTCATGCTGTCCTTGACAACGGTTGGACTGA
GGGCAATCTGTGTATGGTATGGATAAGAGAAAGAATAAGTAGGTTTAATGAATAACAAACGAAGCGCCATA-GAAATTTC
CTGTACTTATGTGTAGGGGGGATCTACCCACTAGCTGGCATGCAAATGAATTGCGTCGCTATATGAGCATCTGCTCTGCT
CTATGAATACCACGTCTATTTTGTAATTGGACTAATTTTCTTTGACTGATGCAGATGGCCCAAAGGACACACCAATTGAG
CATGTGCTGGAGAAGACCTATGATGCCAAAGCTGGAATTGGTATGCCTGATCTATGA-----------------------
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>chr4B_1_TraesCS4B01G132600
GAAGGAAAAGAAAAAAAGACA-GGGAAAAAAAGCACAATGAGAAGTGGATAACAATGTGTATATATATAATACTAGCATA
TAGGGTAAACCAAACTCAAGTAAATATAGCATGGAGCTAGTTAAGAATCTGACTAGTTAAAAGAATACAATTTTTTTTAA
CGTAATTCTTCTACAGAGATTAATT-AGTTCTGCAAATGATTGGAGAAAAGCATGTCGGGGCACACTACCGCGGGATATG
CTAGGATGCCCATAGCAAGTA-------AAGCGACTGGCCATACATACAGATTGGATAAAGCAATCGGCGAAAAAGGACA
CATCCTTTTCGCCCAGGTTCATGCCACTAGGGCCGCTGCCCAAGCCGGAGAAACA-------------------------
CCCAAGCCTTTTACCAGTTGAATCGACGCA---ACAGGGGGAATTCACGAGGTGCTCCTAACCACAGTT-----------
---------GCCGCAGCAAAGAACC-AAATCGCGACCGAATCGGAGCCCGGAACAAAGCTAGCGCGACGGACTTGCGAGA
GAAGACGC-------------------GAGGAACTGGAGCAATAGACAGATCTTGGC------------GAGTTTACCTT
TGGCTTGTCAGCGGCGGGAATCTGGCGGGGGCTGGACCGGTGGGGGTGGAGCGGCCGGCGAAGGGGGAGAAGATCAGCTT
AGCCCTAGCTAGAGGAGGA------------AGAAGAGCCGGGCGAGGTCGCGGCTCATTTAGAGAGCAACTTGCAGTCT
AGCCCTCACTCTTTTCCGCCGTCACACTCTCATCCCTGAGATTTGCCGAGCCGTCCGATCCTGCGCTGACCGAGCGAGCA
CCGTTGATCTGCCTGCCTCCGGAGAGCCACGG-------GCCTA--------------GCTACGTGGGCCAACGCTTGGG
TCCGGTTGTCA-------------------TGCCGGCCCGCTTTGAGGCCCATCCCAGGTGGTTTTCTTCCTCCGGCCGC
CCACCCTCTCCCGCGAGCGCCGCCGTCTCTCTCCATCCATCCATCCACTCTCCCAGCCAAATCGAGCCGAGCCAAGCCGC
CGCCTGAGCTGAGAGGCAGGAATGGGGTGGAAGGCCGCGGAGAAGCTCATCAGGCACTGGAAGATCCTCCGCGGCGACAA
CGTGCGCGGCATCTCCGTCCCCTCCACACCCCCGCTA-----------GCTCCGGTTGCTCTCGGGAGATCTCTGACTGA
AATCTCTTCTTCCTTTTTCTCTGTGATGAAATTGGCGCCAGGTGATGATCATAAGGGGCAAGGACAAGGGGGAGAGCGGG
CTGATCAAGCGGGTCATCCGGTCGCAGAATCGCGTCATCGTCGAGGGCAAGAATCTGGTAATATAATCGTA----TGCAC
TCTTCCTTGCTCGCTTTCTCTTGTCAGCTATTGCTTAGGATTCGGTGCTACTGTTTGGTGTCATGGGAGTATCAATTTGC
GTATCTGTGACTAGCTGTATGCAATGTGATACGTGCTCTCAGTGCTGCACTACAGGTGTTTGTCGAAATTCCCAGTCCAC
TGAAAGTGAA-TGGGCAACCTGGCTGCGTTAATTCCGCGTGCTAATTCTTCAGGGATACTGCCCAGGCTAGT-TTGTAGC
TGCTATGCTGCGCCTGCACAGATGTTATTTGGTGATTACTGCAACAGAGGAT---TTTTTTTCCCCTTCAGTTATCATGG
ATGATGAGATTAAACAATGGTGCCCAGGAGGAAAATTCCCACTGGGATATCATCTGTAAGAATATAAATCTGTAAAGTAA
ATGAGAATCTAACTCTTCCCACCGCATACCGTGCATCCATCATAACATAAGAATACCTGAAATACGAAACGAGCACATAT
-ACTAGTAGGATGTTTGCCTGAGTGCATCATTATATATATGGAGGTCGGCTTTTTGGTCAAATCTTGGAGAGCTCAAGCA
ATACAAGTGTCACTTAAGGCGTGTTTGAAAGGCTGGAGGTGTTAGGCCTAATCCATTAAAATGGTAGGGAAAGGGGACCA
AAACAACCCTGGCAGGATCTGTTGCAGCGTTGTGCGTGTCTATCTGCGTTTGAGCGGTTAGCATA------TCCCGTTTT
GGGTATGTCTGCGTCTACCAAGTCGTTACTGTGCTATACATACTTATACTACAATGTCCCTCACTCTGTTGTTTGTTTAC
TTTTAGTTAATTGTCAAACTCACAATGAGATGCCTTAAAAAACTGATAATAAGACCATGCAATGGTTTGCTGGATTTGTA
CATGTCCTAAGCCCATAACAAACAAATGC----TGAATGACTCAGTTGGATAAAAGCAGCTTGATTTGAACATGGTGAGG
AAGTGACTGTAGTGAATATTGAACAGGAACTGTGAACTGCACAATGTTTGTCTTTCTACATCTTTGTATATCTACTGTAA
GATGTTGCATGTTTATGGGGGATACTGGGTAACAGGACAATTGCAAC---------------GTTTATGTGTTTCTCTTG
TAATGAAAAATCACTTAGTAATTTGTATGCTGACATATTTTCAGGTTAAGAAACATATTAAGCAAGGGGAAGGACAAACA
GGCGGGATCTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTACAAGTAATTGATCCAGTCACCGGGTATGATACTTT
TGGCCATCTTTTGATACCGTTATTCTCTAGAGATACAGTTTTTATTTGTCTACATACTAAAAATATATTTGTCAACATTC
TGACTGCAGGAAACCATGCAAGACTACATACAAGTATTTGCCAGATGGGACGAAAGTAAGGGTCTCTAGAGGAATGTATG
CGTCTGGTGCTGTCATACCTCGGCCAGAAATTTTGAAGGAGAGAAAAAAACCGAGACCCACATCTCGTATGTTCCGTAAA
CAGATCCTTTTTGCTCATTATTAGTTGCTTTTGAAGTGCATAATTATACTGTTCAGAGAAGAATTAACTGGCTTGTTATC
CTGCAATTGTTTGTGAACATCTGATTTTTTCATGATGCCTGGATTATAATTGAGCTAACACTAATCTGACCTCCATCTAA
AATTAGGAGAGCAAGCCAATCTCAACTTAATACAACTTATTTTTT--------------------------------TTC
ATAATTTTGTCTCGTGTTGCTGCAT-------------------------------------TCTGCGATAGTCATGCTA
CTATAGGTGTTTCTGCTAATGATGTTTGGCTTGTTTGCTGCATTCTACTCCCTCCGTCCCATAATATAAGAATGTTTTTG
ACATTAGTGTAGTGTCATAAACGTTCTTATATTATGGGACGGAGGGAGTACATATTAGAAAGACTTTCACAGGCATGATA
AAATTAGTTAAGCAATA----GTAAAATGCGCAGAATAAATTCTGATGCTTCATGCTGTCCTTGACAACGGTTGGACTGA
GGGCAATCTGTGTATGGTATGGATAAGAGAAAGAATAAGTAGGTTTAATGAATAACAAACGAAGCGCCATA-GAAATTTC
CTGTACTTATGTGTAGGGGGGATCTACCCACTAGCTGGCATGCAAATGAATTGCGTCGCTATATGAGCATCTGCTCTGCT
CTATGAATACCACGTCTATTTTGTAATTGGACTAATTTTCTTTGACTGATGCAGATGGCCCAAAGGACACACCAATTGAG
CATGTGCTGGAGAAGACCTATGATGCCAAAGCTGGAATTGGTATGCCTGATCTATGAGAGGAGACGTCCACTGCTGGGAG
TGAAAGAGAA--AGGGTTGGGCATATTTGTGATCTAT--CCATCCTAGTTAAGATAGTAGGAACTCTGTGGTTATTATGT
CAGGAGGCACTCAACATTTGTTCACGAATAAAACTAGCCAGCATCTCCTGCGTTTCCAGAAATCTGTCCCTGAAGACCCT
--CTGAATGTTGTGCATCTTGTTTGTCGTTTGATTGTATGAATGAGGCCCCAAGAAAGTACGG---ACCAGGCTGCTGGT
TCACCAAGAACAGTTCTTGAGTTTT--ACTGTAATTTCCTTGCA-TTCCAGCATGTGTTCTGAAGTTAACTGAATGTGCG
AGAGCAAAAAAAGT--------GAGAAAGTCTATCATTTGTGACGTCTGTTTCAGTTGTTGCATTGTGCTGAAACAAATC
CCAGCTACTCATCACAGGAGTGAGGAGTTTATATTTCTCTATGGAAGGTAGAATGGCTATACACTGTCAATGATGAAATC
ATCCAGGTCCT------ATGAAATTATGGTCATTGAAAGTACATCGACTTATATTCGCAAAAAAAAAGTACACAGAATTA
GACCTAAGA-----TAAGGCCGTGAGCATCAGATTGCAAAGAAGCTCTGTTAATCATAACACAAACTCTTAA--------
CCGTAAGTAAACATGAAAGGAATGCATTTAGTAGCACTCTGAACCCACTTGAAGAAAAAAATTCTATGCATATATTTACA
GCCGTGATAAAACACAGTATGTATTCATTTCCACAAGAATTTGGACACACATCCACAATCCTACTCCCTCCGTTCCGTAA
TGCAAGATATTTTTCCAAGCTATTAGGTAGTACTCCCTCTGTAAAGAAATATAAGAGCGCTTCACCCTTGTCGCCGAATT
TGCTGAGCACATCAAATACTTCTTTTGCTAGAAATAATCTGGTTTATGCCCAACGAAGAACAGTACGTAGTAAATAAATC
CGACAAAACAGGGGACGAACAAGGATGAGCAGAGAGGGTAGTGCCAAAAATGAAAG
>chr4D_1
GAAGGAAAAGAAAAAAAGACAAGGGAAAAAAAGCACAATGAGAAGTAGATAACAATGTGTATATATATAATACTAGCATC
TAGGGTAAATCAAACTCAAGTAAATATGGCATGGAGCTAGGTAAGAATCTGACTAGTTACAAGAATATATATTTTTTTAA
CGTAATTCTTCTACGGAGATTAATTTAGTTCTGCAAATGATTGGAGAAAAGCATGTGGGGGCACACTACAGCGGGATATG
CTACGATGCCCATAGCAAGTA-------AAGCGACTGACCATACATACAGATTGGATAAAGCAATCGGCGAAAAAGGAGA
CATCCTTTTCGCCGAGGTTCATGCCACTACGGCCTATGCCGAAGCCGGAGAAACACAACTACGGAAACCGAAGCAGAAAG
CCCAAGCCTTTTACCAGTTGAATCGACGCA---ACAGGGGGATTTCACGAGGTGCTCCTAACCACAGTTGTCGGCGACTT
GGCACCTTTGCCGCAGCAAAGAACAAAAATCGCGACCGAATCGGAGCCCGGAAC-AAGCTAGCGCGACGGACTTGCGAGA
GAAGACGCATGGCAAGAAAGTGGCCGCGAGGAACTGGAGCAATAGACAGATCTCGGT------------GAGTTTACCTT
TGTCTTGTCAGCGACTGGAATCTGGCAGGGGCTGGATCGGTGGGGGTGGAGCGGCCGGCGAAGGGGGAGAAGATCAGCTT
AGCCCTAGCTAGAGGAGGAGGAGGAGGA---AGAAGAGCTGGGCGAGGTCGCGGCTCATTTAGAGAGCAACTTGCAGTCT
AGCCCTCACTCTTTTCCGCCGTCACACTCTCATCCCTGAGATCTCCCGAGCCGTCCGATCCTGCGCTGACCCAGCCAGCA
CCGTTGATCTGCCTGCCTCCGGAGAGCCACGG-------GCCTGCGGGCTGCGGCCTGGCTGCGTGGGCCAACG------
-------------CTTGTCATGCCAGTTTCTGCCGGCCCGCTTTGAGGCCCATCCCAGGTGGTTTTCTTCCTCCGGCCGC
CCACCCTCCCCCGCGAGCGCCGCCGTCTCTC----TCCATCCGTCCACTCTCCCAGCCAAATCGAGCCGAGCCAAGCCGC
CGCCTGAGCTGAGAGGCAGGAATGGGGTGGAAGGCCGCGGAGAAGCTCATCAGGCACTGGAAGATCCTCCGCGGCGACAA
CGTACGCGGCATCTCCGTCCCCTCCACACCCG---------------CGCTCCCGTTGCTCTCGAGAGATCT----CTGA
AATCTCTTCTTCCTTTTCTC-TCTGATGAAATTGGCGCCAGGTGATGATCATAAGGGGCAAGGACAAGGGGGAGAGCGGG
CTGATCAAGCGGGTCATCCGGTCGCAGAATCGCGTCATCGTCGAGGGCAAGAATCTGGTAATAT-----ATCGCCTGCAC
TCGTCCTTCCTCGGTTTCTCTTGTCAGCTGTTGCTTAGGATTCGGTGCTACTGTTTGGTGACGTGGGAGTATCGGTTTGC
GTATCTGTGACTGGCTGTATGCAATGCGATACGTGCTCTGAGTGCTGCACTACAGGTGTTTGTCGAAATTCCCAGTCAGC
TGAAAGTGAAATGGGGAACTTGGCTGCGTTGATTCCGCGTGCTAATTCTTCACGGATACTGCCCAGGCTAGTGTTGTAGC
TGCTATGCTGCGCCTGCACAGATGTTATTTGGTGATTACTGCAACAGAGG----TTTTTTTTCCCATTCGATTGTCATGA
ATGATGAGATAAAACGATAGTGCCCAGGAAGAAAATTCCCACTGGGATACCATCTGTATGAATATAAATCTGTAAAGTAA
ACGAGAATC---------CCACCGCATACCGTGCATCCATCATAACATAAGAATACCTGAAGTACGAAACAAGCACATAT
-ACTAGTAGGATGTTTGCCTGAGTGCATCATCATATATATGGAGGTCGGCTTTTTGGTCAAATGTTGGAGAGCTCAAGCA
ATACAAGTGTCACTTAAAGCGTGTTTGAAAGGCTGGAGGT--TAGGCCTAATCCATTAAAATGGTAGGGAAAGGGGACCA
AAACAACCCTGGCAAGATCTATTGCAGCGTTGTGTGTGCCTATCTACGTTTGAGCGGTTAGCATAGA-TTTTCCCTTTTT
GGGCATGTTTTCGTCTACCAAGTTGTTACTGTGTTGTACATACGTATACTACAATGTCCCTCACTCTCTTATATGTTTAC
TTTTAGTTAATTGTCAAACTCACAATGAGATGCCTTAAAAAACTGATAATAAGACCATGCAATGTTTTGCTGGATTTGTA
CATGTCCTAAGCCCATAACAAACAAATGT----TGAATGACTCAGTTAGATAAAAGCAGCTTGATTTGAACATGGTGAGG
AAGTGACTGTAGTGAATATTGGACAGGAACCGTGAACTGCACAATGCTTGTCTTTCTACATCTTTGTATATCTACTGTAA
GATGTTGCATGTTTATGGGGGATACTGGGTAACAGGACAATTGCAACCAGCAAACTTTTACTGTTTATGTGTTTCTCTTA
TAATGAAAAATCACTTAGTAATTTGTATGCTGACATATTTTCAGGTTAAGAAACATATTAAGCAAGGGGAAGGACAAACA
GGTGGGATCTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTACAAGTAATTGATCCAGTCACCGGGTATGATACTTT
TGGCCATCTTTTGATACCGTTATTCTCTAGAGATACAGTTTTTATTTGTCTACATACTAAAAATATATTTGTCAACATTT
TGACTGCAGGAAACCATGCAAGACTACATACAAGTATTTGCCAGATGGGACTAAAGTAAGGGTCTCTAGAGGAATGTATG
CGTCTGGTGCTGTCATACCTCGGCCAGAAATTTTGAAGGAGAGAAAAAAGCCGAGACCCACATCTCGTATGTTCCATAAA
CAGATCCTTTTTCCTCACTATTAGTTGCTTTTGAAGTGCATAATTATACTGTTCAGAGAAGAATTAACTGACTTGTTATC
CTGCAACTGTTTGTGAAAATCTGAATTTTTCATGATGCCTGGATTATAATTGAGCTAACACTAAAATGACCTCCATCTAA
AATTAGGAGAGCAAGCCGATCTCAACTTA----------------------------------ATACAACTTATTTTTTC
ATAATTTTGTCTCGTGTTGCTGGAATTTTCTTGTTCTGGAGCACTATGTTTTATGTTCTGGATCTGCGATAGTCATGCTA
CTATAGGTGTTTCTGCTAATGATGTTTGGCTTGTTTGCTGCATTCTAC--------------------------------
---------------------------------------------------ATATTAGAAAGACTTCCACAGGCATGATA
AAATTAGTTAAGCAATA----GTAAAAAGCGCAGAATAAATTCTGATGCTTCATGCTGTCCTTGACAACAGTTGAACTGA
GCGCAATCTGTGTATGGTATGGATAAGAAAAAGAATAAGTAGGTTTAATGAATAACAAATGAAGCGCCATA-GAAATTTC
CTGTACTTATGTGTAGGGGGTATTTACCCACAAGCTGGCATGCAAATGTACTGCATCGCTATATGAGCATCTGCTCTGCT
CTATGAATACCACGTCTATTTTGTGATTGGACTAATTTTCGTTGACTGATGCAGATGGCCCAAAGGACACACCAATTGAG
CATGTGCTGGAGAAGACCTATGATGCCAAAGCTGGAATTGGTATGCCTGATCTATGA--GGAGACGTCCACTGCTGGGAG
TGAAAGAGAGAGAGAGTTGGGCATATTTGTGATCTATATCCATCCTAGTTACGGCAGTAGGAACTCTGCGGTTATTATGT
CAGGAGGCACTCAACATTTGTTCACGAATAAAACTAGCCAGCATCTCCTGTGTTTCCAGAAATCCGTCCCTGAAGACCCT
GACTGAATGTTGCGCATCTTGTTTGTCGTTTGATTGTATGAATGAGGCCCCAAGAAAGTATGGACAACCAGGCTGCTGGT
TCACCAAGAACAGTTCTTGAGTTTTTACTGTAATATT-----TTTTTCCAGCATGGCTCCTGAAGGTAGCTGGATATGCG
AGTGCAAAAAAAGAAAATTTGCGTCGAAGTCTGTCATTTATGCTGTCTGTTTCAGTCGTTGCATTGTGCTGAAACAAATC
CTAGCTACTCATCTCAGGAGTGAGGAGTTCATATTTC---------------ATGGCTATACACTGTCGATGATGAAATC
ATATAGGTCCTG---CTATTAAATTATAGTCATAGAAAGTGCATGGAATTAGACCTAATTAAGATAACCGTTTGCATCCG
CCAACAAACCAACCTAAGGCCGTGAGCATCAGATTGCAAAGAAGCTCTGTTAATCGTAACACAAACTCTTAAACTAACCA
C---AAGTAAACATGAAAGGAATTCATTAAGA----------------------AAAAAAAATCTATGCAG-TATTTACA
GCCGTGATAAAACACATTCTGTATTCA-TTCCACAAGAATTTGGACACAC--CCACAATCCTA-----------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>chr4A_1
GAAGGAAAAGAAAAAAAGACAAGGGAAAAAAAGCACAATGAGAAGTAGATAACAATGTATATATATATAATACTAGCATC
TAGGGTAAATCAAACTCAAGTAAATATAGCATGGAGCTAGTTAAGAATCTGACTAGTTACAAGAATAAATTTTTTTGG-A
CGTAATTCTTCTACGGAGATTAATTTAGTTGTGCAAATGATTGGAGAAAAGCATGTGGGGGCACACTAGAGCGGGATATG
CTACGATGCCCATAGCAAGTACCAAGTAAAGCGACTGGCCATACATAGAGATTGGATAAAGCAATCGACGCAAAAGGACG
CATCCTTTTCGCCCAGGTTCATGCCACTACGGCCACTGCCCAAGCCGGAGAAACACAACTACGGAAATCGAAGCAGCAAG
CCCAAGCCTTTTACCAGTTGAATCGACGCAGCAACAAGGGGATTTCACGAGGTGTTCGTATCCACGTTCGTCGGCGACTT
GGCGCCTCTGCCGCAGCAAAGAACCAAAATCGCGACCGAATCGGAGGCCGGAAC-AAGCTAGCGCGACGGACTTGCGAGA
GAAGACGCATGGCAAGAAAGTGGCCGC---------GAGCAATAGACAGATCTTGGCGAGGGGTTCGGCGAGTTTACCTC
TCTCTTGTCAACGGCTGGAATCTGACAGT-----------TGGGGCTGGAGCCGCCGGCGAAGGGGGAGAGGATCAGCTT
AGCCCTAGCTAGAGGAGGAGGAGGAGGAGGAAGAAGAGCTGGGCGAGGTCGCGGCTCATTTAGAGAGCAACTTGCAGTCT
AGCCCTCACTCTTTTCCGCCGTCACACTCTCATCCCTGAGATTTCCCCAGCCGTCCGATCCTGCGCTGACCGAGCCAGCA
CCGTTGATCCGCCTGCCTCCGGAGAGCCACGGGCCTGCCGCCTA--------------GCTACGTGGGCCGACGCTTGGG
TCCGGCTCACACACTTGTCATGCCAGTTTCTGCCGGCCCGCTTTGAGGCCCATCCCAGGTGGTTTTCTTCCTCC------
---------CCCGCGAGCGCCGCCGTCTCTC----TCCATCCATCCACTCTCCCAGCCAAATCGAGCCGAGCCAAGCCGC
CGCCTGAGCTGAGAGGCAGGAATGGGGTGGAAGGCCGCGGAGAAGCTCATCAGGCACTGGAAGATCCTCCGCGGCGACAA
CGTGCGCGGCT---------CCTCCACACCCCGCTCGCTCCTCTTCCCGCTCCCGTTGCGCTCGAGATCTCT----CTGA
AATCTCTTCTTCCTTTTTCTGTCTGATGAAATTGGCGCCAGGTGATGATCATAAGGGGCAAGGACAAGGGGGAGAGCGGG
CTGATCAAGCGGGTCATCCGGTCGCAGAATCGCGTCATCGTCGAGGGCAAGAATCTGGTAATATATATAATCGCCGGCGC
TCTTCCTTCTTCGGTTTCTCTTATCAGCTATTGCTTAGGATTCGGTGCTACTGTGTGGTGTCATGGGAGTATCGATTTGC
GTATCTGTGACTAGCTGTATGCAATGTGATACGTGCTCCGAGTGCTGCACTACAGGTGTTTGTCGAAATTCCCAGTCCAC
TGAAAGTGAA-TGGGCAACTTGGCTAGTGTTGTAA----------------------------------------GTAGC
TGCTATGCTGCAGCTGCACAGATGTTATTTGGTGATTACTGCAACAGAGGATCTTTTTTTTCTCCATTCGATTGTCATGA
ATGATGAGATAAAACGATAGTGCCCAGGAAGAAAATTCCCACTGGGATACCATCTGTATGAATATAAATCTGTAAAGTAA
ACGAGAATCTAACACTTCCCACCACATACCGTGCATCCACCACGACATCAGAATACCATAAGTACGGAACGAGCACATAT
TACTTGTAGGATACTTGCCTGCTTGAATCATCATATATATGGAGGTCGGCTTTTTGGTCAAATCTTGGAGAGCTCAAGCA
ATGCAAGTGCCACTTAAGGCGTGTTTGAAAGGCTGGAGGT--TAGGCCTAATCCATTAAAATGGTAGGGAAAGGGGACCA
AAACAACCCTGCCAAGATATATTGCAGCGTTGTGCGTGCCTATCTACGTTTGAGCGGTTAGCATAGATTTTTCCCTTTTT
GGGCATGTTTGCGTCTACCAAGTTGTTACTGTGCTATACATACTTATACTACAATGTCCCTCACTCTGTTATATGTTTAC
TTTTAGTTAATTGTCAAACTCACAATGAGATGCCTTAAAAAACTGATAATAAGACCATGCAATGTTTTGCTGGATTTGCA
CATGTCATAAGCCCATAACAAACAAACGCGGAATGAATGACTCAGTTAGATAAAAGCAGTTTGATTTGAACATGGTGAGG
AAGTGACTGTAGTGAATATTGAACAGGAACTGTGAACTGCACAATGCTTGTCTTTCTACAGTTTTGTATATCTACTGTAA
GATGTTGCATGTTTATGGGGAATACTGGGTAACAGGACAATTGCAACCAGCAAACTTTTACTGTTTATGTGTTTCTCTTG
TAATGAAAAATCACTTAGTAATTTGTATGCTGACATATTTTCAGGTTAAGAAACATATTAAGCAAGGGGAAGGACAAACA
GGTGGGATCTTCTCAATGGAAGCTCCACTTCATGTTTCAAATGTACAAGTAATTGATCCAGTCACCGGGTATGATACTTT
TGGCCATCTTTTTTTACCTTTATTCTCTAGAGATACAGTTTTTATTTGTCTACATACTAAAAATATATTTGTCAACATTT
TGACTGCAGGAAACCATGCAAGACTACATACAAGTATTTGCCAGATGGGACTAAAGTAAGGGTCTCTAGAGGAATGAATG
CGTCTGGTGCTGTCATACCTCGGCCAGAAATTTTGAAGGAGAGAAAAAAGCCAAGACCCACATCTCGTATGTTCCATAAA
CAGATCCTTTTTGCTCATTATTAGTTGCTTTTGAAGTGCATAATTATACTGTTCAGAGAAGAATTAACTGACTTGTTATC
CTGCAATTGTTTGTGAACATCTGAGTTTTTCATGATGCCTGGATTAGAATTGAGCTAACACTAATCTGACCTCCATCTAA
AATTAGGAGAGCAAGCCAATCTCAACTTAATACAACTTATTTTTTCAAGCCAATCTCAACTTCATACAACTTATTTTTTC
ATAATTTTGTCTCGTGTTGCTGGAATTTTCTTATTCTTGAGCACTATGTTTTATGTTCCGGATCTGCGATAGTCATGCTA
CTATAGGTGTTTCTGTTAATGGTGTTTGGCTTGTTTGCTGCATTCTAC--------------------------------
---------------------------------------------------ATATTAGAAAGACTTCC---------ATA
AAATTAGTTAAGCAATAAGTAGTAAAAAGCGCAGAATAAATTCTGATGCTTCATGCTGTCCTTGACAACGGTTGGACTGA
GGGCAATCTGTGTATGGTATGGATAAGAAAAAGAATAAGTAGGTTTAATGTATAACAAACGAAGCGCCATAGGAAATTTC
CTGTACTTATGTGCAGGGGGTATCTACCCACTAGCTGGCATGTGAATGTATTGTGTCGCTATATGAGCATCTGCTCTGCT
CTAGGAATACCACGTCTATTTTGTAATTGGACTGATTTTCTTTGACTGATGCAGATGGCCCAAAGGACACACCAATTGAG
CATGTGCTGGAGAAGACCTATGATGCCAAAGCTGGAATTGGTATGCCTGATCTATGAGAGAAGACGTCCATTGCTGAGAA
TGAAAGAGAA--AGAGTCGGGAATATTTGTGATCTAT--CCATCCTAGTTAAGATAGTAGGAACTCTGCGGTTATTATGT
CAGGAAGCACTCAACATTTGTTCACGAATAAAACTAGCCAGCATCTCGTGTGTTTCCAGAAATCTGTCCCTGAAGACCCT
GATTGAATGTTGTGCATCTTGTTTGCTGTTTGATTGTATGAATGAGGCCCCAAGAAAGTACGGG---CCAGGCTGCTGGT
TAACCAAGAACAGTTCTTGGGTTTTTTACTGTAATTTCTTTGTTTTTCCAGCATGGCTCCTGAAGGTAGCTGAATATGCG
AGTGCAAAAAAGGAAAAATTGCGACAAAGTCTTTCATTTATGCTGTCTGTTTCAGTCGTTGCATTGTGCTGAAACAAATC
CTAGCTACTCATCTCAGGAGTGAGGAGTTCATATTTC---------------ATGGCTATACACTGTCAATGATGAAATC
ATATACTAGGTCCTACTATTAAATTATAGTCATAGAAAGTGCATGGAATTAGACC----TAAGATAACCGTTTGCATCCG
CCAACAAGCCAACCTAAGGCCGTGAGCATCAGATTGCAAAGAAGCTCTGTTAATCGTAACACAAACTCTTAA--------
C---AAGTTAACATGAAAGGAATTCATTTAGTAGCACTGTGAACCCACTCGAAG-AAAATATTCTTCACAACTATTTACA
GCCGTGATAAAACAGTC--TGTATTCATTTCCACAAGAATTTGGACACACATCCACAATCC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>SNPs
----------------------------------------------S--------------------------------S
---------S-------------------------------------------------S-------S-S----------
--------------S-----------------------------------------S------------S----------
---S----------------------------------------------------------------------------
-----------------------------S----S---------------------------------------------
------------------------------------------S-------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--S------------S----------S---------S-------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------S------------------------------S----
--------------------------------------------------------------------------------
-----S-SS-----------------------------------------------------------------------
--------S----------------------SSSS---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------SSSSS----------------S----------S-------SSSS----
--------------------S-S---------------------------------------------------------
-----------------------------------------------------------------SSSSSS---------
--------S----S-----------------------------------------------------------S------
---------------------------------------S----------------------------------------
-------------------S----------S---------------------S---------------------------
-----------------------------------------------------------------S---SS--S-----S
----------S----S--S----------S-------------------S--------S---------------------
-S-----------S-----------------------------------------------S------------------
-------------------------------S------------------------------------------------
----------------------------------------SS--------------------------------------
--------------S-----S-----------------S------S-----------------------------S----
---S----S--------------S----------------------------------------------S-S-------
----------------------------------------------------------------S---------------
-----------------------------------------------S--------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
-------------------------------------------------------------------------------S
---------------------------------------------------S----------------------------
-------------------------------------------------S-------------------------S----
----------------------------------------------------------------------S---------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S-S-------------------------------------------------------
------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-------------
---------------------------S----------------------------------------------------
----------------------------S---------------------------------------------------
--------------------S---------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------S-----------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------S---SS-----------SS-S------S--S------S----
--S----------S----------S-------S------S--SS------------S-----------------------
-S-----------S---------------S-------SSSSSSSSSSSSSSS----------------------------
--SS---------------S-------S-----S------S---S--S---S-SSSSSSS--S-S--SSSSSSSS-SSSS
SSSSS---S----------------------------------------------S------------------------
-SSS-------------------S--------------S----------S--------------------SS--------
----------------S-S--------------------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_350
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GCCCAGGTTCATGCCACTAG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_2095
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GGATCTGTTGCAGCGTTGTG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_1273
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GGTTGCTCTCGGGAGATCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2800
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
TGACTGCAGGAAACCATGC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>forward_2101
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AACAACCCTGGCAGGATCTG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_3394
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------ATGGGACGGAGGGAGTACAT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_2643
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------AAGGGGAAGGACAAACA
GGC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>reverse_4703
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CACCCTTGTCGCCGAATT
TG------------------------------------------------------------------------------
--------------------------------------------------------
