Multiple sequence alignment - TraesCS4B01G130700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G130700 chr4B 100.000 4526 0 0 1 4526 171144900 171140375 0.000000e+00 8359.0
1 TraesCS4B01G130700 chr4B 100.000 167 0 0 4360 4526 419839296 419839462 4.400000e-80 309.0
2 TraesCS4B01G130700 chr4B 75.099 506 104 17 2611 3114 172378950 172379435 2.740000e-52 217.0
3 TraesCS4B01G130700 chr4B 95.455 44 2 0 3233 3276 119822932 119822889 2.260000e-08 71.3
4 TraesCS4B01G130700 chr4D 95.673 3420 121 13 265 3659 111052424 111055841 0.000000e+00 5470.0
5 TraesCS4B01G130700 chr4D 74.334 2065 404 87 1091 3114 111584999 111586978 0.000000e+00 761.0
6 TraesCS4B01G130700 chr4D 82.482 548 40 23 1635 2171 345247882 345248384 3.240000e-116 429.0
7 TraesCS4B01G130700 chr4D 90.842 273 21 4 1 271 111050902 111051172 3.330000e-96 363.0
8 TraesCS4B01G130700 chr4D 100.000 30 0 0 1562 1591 345247848 345247877 6.330000e-04 56.5
9 TraesCS4B01G130700 chr4A 93.165 3760 140 42 4 3706 465893710 465890011 0.000000e+00 5411.0
10 TraesCS4B01G130700 chr4A 79.096 354 63 10 2762 3114 465546654 465546311 2.720000e-57 233.0
11 TraesCS4B01G130700 chr4A 86.957 69 7 2 4160 4228 731103059 731102993 4.860000e-10 76.8
12 TraesCS4B01G130700 chr4A 100.000 28 0 0 4200 4227 708696288 708696261 8.000000e-03 52.8
13 TraesCS4B01G130700 chr2D 79.152 566 95 15 3781 4345 63565787 63565244 1.990000e-98 370.0
14 TraesCS4B01G130700 chr2D 79.104 402 71 9 3828 4227 568794830 568795220 9.650000e-67 265.0
15 TraesCS4B01G130700 chr2D 76.471 527 87 17 3830 4346 401545724 401545225 7.520000e-63 252.0
16 TraesCS4B01G130700 chr2D 81.034 232 40 4 3986 4216 645309177 645308949 1.000000e-41 182.0
17 TraesCS4B01G130700 chr5B 100.000 168 0 0 4359 4526 452842956 452842789 1.220000e-80 311.0
18 TraesCS4B01G130700 chr5B 77.987 477 71 13 3785 4260 495536652 495536209 7.460000e-68 268.0
19 TraesCS4B01G130700 chr5B 87.879 66 8 0 4280 4345 658789171 658789106 1.350000e-10 78.7
20 TraesCS4B01G130700 chr5B 87.879 66 8 0 4280 4345 658789868 658789803 1.350000e-10 78.7
21 TraesCS4B01G130700 chr5B 92.157 51 4 0 3228 3278 11771790 11771740 6.280000e-09 73.1
22 TraesCS4B01G130700 chr3D 83.188 345 53 5 3885 4227 332151679 332152020 1.220000e-80 311.0
23 TraesCS4B01G130700 chr3D 95.455 44 2 0 3236 3279 515230681 515230638 2.260000e-08 71.3
24 TraesCS4B01G130700 chr2A 100.000 167 0 0 4360 4526 226167768 226167602 4.400000e-80 309.0
25 TraesCS4B01G130700 chr2A 74.903 514 94 21 2765 3277 733392162 733391683 7.680000e-48 202.0
26 TraesCS4B01G130700 chr2A 78.488 344 39 16 3885 4227 538388558 538388249 4.620000e-45 193.0
27 TraesCS4B01G130700 chr2A 81.481 81 11 4 4260 4339 97867037 97867114 3.780000e-06 63.9
28 TraesCS4B01G130700 chr7B 99.408 169 1 0 4358 4526 368042413 368042245 1.580000e-79 307.0
29 TraesCS4B01G130700 chr7B 99.412 170 0 1 4357 4526 736446705 736446873 1.580000e-79 307.0
30 TraesCS4B01G130700 chr7B 88.889 54 4 2 3226 3277 711061469 711061416 1.050000e-06 65.8
31 TraesCS4B01G130700 chr6B 100.000 166 0 0 4361 4526 322739143 322738978 1.580000e-79 307.0
32 TraesCS4B01G130700 chr6B 78.212 179 22 9 4165 4342 593961853 593962015 1.040000e-16 99.0
33 TraesCS4B01G130700 chr5A 99.408 169 1 0 4358 4526 557172118 557171950 1.580000e-79 307.0
34 TraesCS4B01G130700 chr5A 77.448 337 42 15 3893 4228 683872019 683872322 2.170000e-38 171.0
35 TraesCS4B01G130700 chr1B 99.408 169 1 0 4358 4526 368118792 368118960 1.580000e-79 307.0
36 TraesCS4B01G130700 chr7A 97.222 180 2 3 4350 4526 84643457 84643636 7.360000e-78 302.0
37 TraesCS4B01G130700 chr5D 79.125 503 51 20 3843 4345 412212948 412212500 9.520000e-77 298.0
38 TraesCS4B01G130700 chr5D 76.254 299 57 10 4047 4345 522633442 522633158 3.650000e-31 147.0
39 TraesCS4B01G130700 chr7D 81.868 364 41 13 3866 4228 605829099 605829438 2.670000e-72 283.0
40 TraesCS4B01G130700 chr3A 95.455 44 2 0 3236 3279 649772522 649772479 2.260000e-08 71.3
41 TraesCS4B01G130700 chr1A 85.507 69 7 3 3241 3306 99868374 99868306 8.120000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G130700 chr4B 171140375 171144900 4525 True 8359.00 8359 100.0000 1 4526 1 chr4B.!!$R2 4525
1 TraesCS4B01G130700 chr4D 111050902 111055841 4939 False 2916.50 5470 93.2575 1 3659 2 chr4D.!!$F2 3658
2 TraesCS4B01G130700 chr4D 111584999 111586978 1979 False 761.00 761 74.3340 1091 3114 1 chr4D.!!$F1 2023
3 TraesCS4B01G130700 chr4D 345247848 345248384 536 False 242.75 429 91.2410 1562 2171 2 chr4D.!!$F3 609
4 TraesCS4B01G130700 chr4A 465890011 465893710 3699 True 5411.00 5411 93.1650 4 3706 1 chr4A.!!$R2 3702
5 TraesCS4B01G130700 chr2D 63565244 63565787 543 True 370.00 370 79.1520 3781 4345 1 chr2D.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
836 2112 0.037232 GGAACGGAACCTCCAGTGAG 60.037 60.0 0.0 0.0 35.91 3.51 F
2598 3929 0.457851 GACTCATCCTCCTCACCACG 59.542 60.0 0.0 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2679 4010 2.108278 GAACGCCCCTGTACACCACT 62.108 60.0 0.0 0.0 0.0 4.00 R
4351 5726 0.034337 GGGCGTTACAGTGACCTTGA 59.966 55.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.850345 TCCCAAAACCTCTGTTGTCCT 59.150 47.619 0.00 0.00 34.13 3.85
152 157 1.005215 CCAAGGAATCTGGCCAAGAGT 59.995 52.381 7.01 5.82 38.67 3.24
175 180 5.068234 GTGACTACACAGTAAGCATACCA 57.932 43.478 0.00 0.00 45.32 3.25
176 181 5.103000 GTGACTACACAGTAAGCATACCAG 58.897 45.833 0.00 0.00 45.32 4.00
178 183 5.105877 TGACTACACAGTAAGCATACCAGAC 60.106 44.000 0.00 0.00 34.21 3.51
180 185 1.927174 CACAGTAAGCATACCAGACGC 59.073 52.381 0.00 0.00 32.08 5.19
182 187 1.137086 CAGTAAGCATACCAGACGCCT 59.863 52.381 0.00 0.00 32.08 5.52
183 188 1.137086 AGTAAGCATACCAGACGCCTG 59.863 52.381 0.00 0.00 40.09 4.85
184 189 1.134788 GTAAGCATACCAGACGCCTGT 60.135 52.381 0.00 0.00 38.74 4.00
185 190 0.391661 AAGCATACCAGACGCCTGTG 60.392 55.000 0.00 0.00 38.74 3.66
186 191 2.464459 GCATACCAGACGCCTGTGC 61.464 63.158 0.00 0.00 38.74 4.57
187 192 1.219124 CATACCAGACGCCTGTGCT 59.781 57.895 0.00 0.00 38.74 4.40
189 194 2.284798 ATACCAGACGCCTGTGCTCG 62.285 60.000 0.00 0.00 38.74 5.03
190 195 4.363990 CCAGACGCCTGTGCTCGT 62.364 66.667 0.00 0.00 42.09 4.18
283 1548 1.527380 TTTGCCTCCGGGTTGTGTC 60.527 57.895 0.00 0.00 34.45 3.67
290 1555 0.601576 TCCGGGTTGTGTCGACATTG 60.602 55.000 23.12 7.95 30.13 2.82
409 1681 7.329471 TGATTGCGAAGTATATGTCAGCTATTC 59.671 37.037 0.00 0.00 0.00 1.75
410 1682 6.332735 TGCGAAGTATATGTCAGCTATTCT 57.667 37.500 0.00 0.00 0.00 2.40
437 1709 2.672961 TGACGATCCATTGACTCACC 57.327 50.000 0.00 0.00 0.00 4.02
534 1806 5.008613 GGCACCACCTTGTGTATATTGTATG 59.991 44.000 0.00 0.00 38.52 2.39
614 1887 3.117491 TCAAACCAAGAGCTGACTGAG 57.883 47.619 0.00 0.00 0.00 3.35
627 1900 5.312079 AGCTGACTGAGATTAACTTTTGCT 58.688 37.500 0.00 0.00 0.00 3.91
628 1901 5.767168 AGCTGACTGAGATTAACTTTTGCTT 59.233 36.000 0.00 0.00 0.00 3.91
818 2094 8.837788 TGCTTATACAATAATCAGATCACAGG 57.162 34.615 0.00 0.00 0.00 4.00
836 2112 0.037232 GGAACGGAACCTCCAGTGAG 60.037 60.000 0.00 0.00 35.91 3.51
892 2168 5.301298 CCCAAGAAATTCCATCTCATCTTCC 59.699 44.000 0.00 0.00 0.00 3.46
940 2217 3.744660 ACCTGTTGACTTGACCTGATTC 58.255 45.455 0.00 0.00 0.00 2.52
945 2226 4.838423 TGTTGACTTGACCTGATTCCTCTA 59.162 41.667 0.00 0.00 0.00 2.43
964 2245 9.862149 TTCCTCTACTACATATGAACAGTGATA 57.138 33.333 10.38 0.27 0.00 2.15
1341 2640 4.521062 GGCGCGCTCATCCTCACT 62.521 66.667 32.29 0.00 0.00 3.41
1436 2737 4.657824 CGGCAACCTCGTCGTGGT 62.658 66.667 13.10 13.10 39.91 4.16
2268 3599 1.826720 GTGTACATCAAGGTCCCGGTA 59.173 52.381 0.00 0.00 0.00 4.02
2419 3750 2.430080 CTTGTCACGCAAGCACGTCC 62.430 60.000 0.00 0.00 46.68 4.79
2420 3751 2.661866 GTCACGCAAGCACGTCCT 60.662 61.111 0.00 0.00 46.34 3.85
2598 3929 0.457851 GACTCATCCTCCTCACCACG 59.542 60.000 0.00 0.00 0.00 4.94
2604 3935 1.420430 TCCTCCTCACCACGAGTTTT 58.580 50.000 0.00 0.00 40.48 2.43
2844 4175 4.172512 ATCGGCTGCTGCTCCCAG 62.173 66.667 15.64 2.92 42.13 4.45
2907 4238 1.154413 GCTCGCCACGATGTTGTTG 60.154 57.895 0.00 0.00 34.61 3.33
3045 4388 2.470983 TCATCCACTGCGACATGAAA 57.529 45.000 0.00 0.00 0.00 2.69
3192 4535 3.695825 ATCAGGGGGACGAGGGGT 61.696 66.667 0.00 0.00 0.00 4.95
3318 4661 1.362717 CGGCGACCAGAATACGGAT 59.637 57.895 0.00 0.00 0.00 4.18
3321 4664 1.472728 GGCGACCAGAATACGGATGTT 60.473 52.381 0.00 0.00 0.00 2.71
3352 4695 0.671781 CAAGACTGTGGCCGAGAAGG 60.672 60.000 8.56 0.00 44.97 3.46
3386 4729 3.201487 AGCATGGAAGATCTTGTGGATGA 59.799 43.478 14.00 0.00 34.33 2.92
3469 4812 1.944177 CTTGGAGGAGGAGAGGAACA 58.056 55.000 0.00 0.00 0.00 3.18
3581 4925 8.487176 GGAACAGACGACGTTTACTTTATTTAA 58.513 33.333 0.13 0.00 0.00 1.52
3615 4978 5.175856 GCCGATCAGTAATTCATGTACTCAC 59.824 44.000 0.00 0.00 29.12 3.51
3659 5034 9.060347 AGTGATAAACGTATTCTCCGAATACTA 57.940 33.333 18.94 9.48 32.43 1.82
3664 5039 5.700846 ACGTATTCTCCGAATACTATGCTG 58.299 41.667 18.94 9.08 32.43 4.41
3667 5042 2.316108 TCTCCGAATACTATGCTGCCA 58.684 47.619 0.00 0.00 0.00 4.92
3679 5054 1.508632 TGCTGCCAAACGTAGTCTTC 58.491 50.000 0.00 0.00 45.00 2.87
3681 5056 0.438830 CTGCCAAACGTAGTCTTCGC 59.561 55.000 0.00 0.00 45.00 4.70
3696 5071 4.341502 CGCCCCCAAAAGTGCACG 62.342 66.667 12.01 0.00 0.00 5.34
3707 5082 2.470286 GTGCACGTCACTTAGCGC 59.530 61.111 0.00 0.00 42.38 5.92
3708 5083 3.103289 TGCACGTCACTTAGCGCG 61.103 61.111 0.00 0.00 0.00 6.86
3709 5084 3.103911 GCACGTCACTTAGCGCGT 61.104 61.111 8.43 0.00 38.14 6.01
3710 5085 2.654912 GCACGTCACTTAGCGCGTT 61.655 57.895 8.43 3.54 35.25 4.84
3711 5086 1.850640 CACGTCACTTAGCGCGTTT 59.149 52.632 8.43 0.00 35.25 3.60
3712 5087 0.179282 CACGTCACTTAGCGCGTTTC 60.179 55.000 8.43 0.00 35.25 2.78
3713 5088 0.318445 ACGTCACTTAGCGCGTTTCT 60.318 50.000 8.43 0.00 33.54 2.52
3714 5089 1.069022 ACGTCACTTAGCGCGTTTCTA 60.069 47.619 8.43 0.00 33.54 2.10
3715 5090 1.980844 CGTCACTTAGCGCGTTTCTAA 59.019 47.619 8.43 6.24 0.00 2.10
3716 5091 2.222223 CGTCACTTAGCGCGTTTCTAAC 60.222 50.000 8.43 0.00 0.00 2.34
3717 5092 2.091744 GTCACTTAGCGCGTTTCTAACC 59.908 50.000 8.43 0.00 0.00 2.85
3718 5093 1.058695 CACTTAGCGCGTTTCTAACCG 59.941 52.381 8.43 0.00 0.00 4.44
3719 5094 1.068333 ACTTAGCGCGTTTCTAACCGA 60.068 47.619 8.43 0.00 0.00 4.69
3720 5095 1.987770 CTTAGCGCGTTTCTAACCGAA 59.012 47.619 8.43 0.00 0.00 4.30
3721 5096 2.282701 TAGCGCGTTTCTAACCGAAT 57.717 45.000 8.43 0.00 0.00 3.34
3722 5097 0.997196 AGCGCGTTTCTAACCGAATC 59.003 50.000 8.43 0.00 0.00 2.52
3723 5098 0.025898 GCGCGTTTCTAACCGAATCC 59.974 55.000 8.43 0.00 0.00 3.01
3724 5099 1.352114 CGCGTTTCTAACCGAATCCA 58.648 50.000 0.00 0.00 0.00 3.41
3725 5100 1.060122 CGCGTTTCTAACCGAATCCAC 59.940 52.381 0.00 0.00 0.00 4.02
3726 5101 2.070783 GCGTTTCTAACCGAATCCACA 58.929 47.619 0.00 0.00 0.00 4.17
3727 5102 2.481185 GCGTTTCTAACCGAATCCACAA 59.519 45.455 0.00 0.00 0.00 3.33
3728 5103 3.126343 GCGTTTCTAACCGAATCCACAAT 59.874 43.478 0.00 0.00 0.00 2.71
3729 5104 4.330620 GCGTTTCTAACCGAATCCACAATA 59.669 41.667 0.00 0.00 0.00 1.90
3730 5105 5.163834 GCGTTTCTAACCGAATCCACAATAA 60.164 40.000 0.00 0.00 0.00 1.40
3731 5106 6.475207 CGTTTCTAACCGAATCCACAATAAG 58.525 40.000 0.00 0.00 0.00 1.73
3732 5107 6.311935 CGTTTCTAACCGAATCCACAATAAGA 59.688 38.462 0.00 0.00 0.00 2.10
3733 5108 7.461918 GTTTCTAACCGAATCCACAATAAGAC 58.538 38.462 0.00 0.00 0.00 3.01
3734 5109 5.667466 TCTAACCGAATCCACAATAAGACC 58.333 41.667 0.00 0.00 0.00 3.85
3735 5110 2.901249 ACCGAATCCACAATAAGACCG 58.099 47.619 0.00 0.00 0.00 4.79
3736 5111 2.235402 ACCGAATCCACAATAAGACCGT 59.765 45.455 0.00 0.00 0.00 4.83
3737 5112 2.607635 CCGAATCCACAATAAGACCGTG 59.392 50.000 0.00 0.00 0.00 4.94
3738 5113 3.517602 CGAATCCACAATAAGACCGTGA 58.482 45.455 0.00 0.00 32.23 4.35
3739 5114 3.930229 CGAATCCACAATAAGACCGTGAA 59.070 43.478 0.00 0.00 32.23 3.18
3740 5115 4.032900 CGAATCCACAATAAGACCGTGAAG 59.967 45.833 0.00 0.00 32.23 3.02
3742 5117 2.901192 TCCACAATAAGACCGTGAAGGA 59.099 45.455 0.00 0.00 45.00 3.36
3743 5118 3.056107 TCCACAATAAGACCGTGAAGGAG 60.056 47.826 0.00 0.00 45.00 3.69
3744 5119 3.262420 CACAATAAGACCGTGAAGGAGG 58.738 50.000 0.00 0.00 45.00 4.30
3745 5120 3.056107 CACAATAAGACCGTGAAGGAGGA 60.056 47.826 0.00 0.00 45.00 3.71
3746 5121 3.775316 ACAATAAGACCGTGAAGGAGGAT 59.225 43.478 0.00 0.00 45.00 3.24
3747 5122 4.960469 ACAATAAGACCGTGAAGGAGGATA 59.040 41.667 0.00 0.00 45.00 2.59
3748 5123 5.424252 ACAATAAGACCGTGAAGGAGGATAA 59.576 40.000 0.00 0.00 45.00 1.75
3749 5124 6.070424 ACAATAAGACCGTGAAGGAGGATAAA 60.070 38.462 0.00 0.00 45.00 1.40
3750 5125 6.749036 ATAAGACCGTGAAGGAGGATAAAT 57.251 37.500 0.00 0.00 45.00 1.40
3751 5126 5.437191 AAGACCGTGAAGGAGGATAAATT 57.563 39.130 0.00 0.00 45.00 1.82
3752 5127 5.024785 AGACCGTGAAGGAGGATAAATTC 57.975 43.478 0.00 0.00 45.00 2.17
3753 5128 3.793559 ACCGTGAAGGAGGATAAATTCG 58.206 45.455 0.00 0.00 45.00 3.34
3754 5129 3.449737 ACCGTGAAGGAGGATAAATTCGA 59.550 43.478 0.00 0.00 45.00 3.71
3755 5130 4.101119 ACCGTGAAGGAGGATAAATTCGAT 59.899 41.667 0.00 0.00 45.00 3.59
3756 5131 5.303589 ACCGTGAAGGAGGATAAATTCGATA 59.696 40.000 0.00 0.00 45.00 2.92
3757 5132 6.183360 ACCGTGAAGGAGGATAAATTCGATAA 60.183 38.462 0.00 0.00 45.00 1.75
3758 5133 6.874134 CCGTGAAGGAGGATAAATTCGATAAT 59.126 38.462 0.00 0.00 45.00 1.28
3759 5134 7.148573 CCGTGAAGGAGGATAAATTCGATAATG 60.149 40.741 0.00 0.00 45.00 1.90
3760 5135 7.385205 CGTGAAGGAGGATAAATTCGATAATGT 59.615 37.037 0.00 0.00 0.00 2.71
3761 5136 9.706691 GTGAAGGAGGATAAATTCGATAATGTA 57.293 33.333 0.00 0.00 0.00 2.29
3781 5156 8.788325 AATGTATAGTGGAGTAAAAGTTGTCC 57.212 34.615 0.00 0.00 0.00 4.02
3782 5157 7.549147 TGTATAGTGGAGTAAAAGTTGTCCT 57.451 36.000 0.00 0.00 0.00 3.85
3783 5158 7.609056 TGTATAGTGGAGTAAAAGTTGTCCTC 58.391 38.462 0.00 0.00 0.00 3.71
3784 5159 4.353383 AGTGGAGTAAAAGTTGTCCTCC 57.647 45.455 0.00 0.00 41.69 4.30
3786 5161 4.081322 TGGAGTAAAAGTTGTCCTCCAC 57.919 45.455 3.25 0.00 45.05 4.02
3787 5162 3.456644 TGGAGTAAAAGTTGTCCTCCACA 59.543 43.478 3.25 0.00 45.05 4.17
3817 5192 3.435682 TGGATAGCCCAGACCCTTT 57.564 52.632 0.00 0.00 40.82 3.11
3821 5196 1.418264 GATAGCCCAGACCCTTTCCTC 59.582 57.143 0.00 0.00 0.00 3.71
3822 5197 0.118346 TAGCCCAGACCCTTTCCTCA 59.882 55.000 0.00 0.00 0.00 3.86
3825 5200 1.685820 CCAGACCCTTTCCTCACCC 59.314 63.158 0.00 0.00 0.00 4.61
3833 5208 2.411765 CTTTCCTCACCCTGCCGGTT 62.412 60.000 1.90 0.00 45.36 4.44
3834 5209 2.002018 TTTCCTCACCCTGCCGGTTT 62.002 55.000 1.90 0.00 45.36 3.27
3835 5210 2.002018 TTCCTCACCCTGCCGGTTTT 62.002 55.000 1.90 0.00 45.36 2.43
3837 5212 1.228124 CTCACCCTGCCGGTTTTCA 60.228 57.895 1.90 0.00 45.36 2.69
3839 5214 2.203437 ACCCTGCCGGTTTTCACC 60.203 61.111 1.90 0.00 45.36 4.02
3855 5230 0.515564 CACCGTCGAAAATCACCCAC 59.484 55.000 0.00 0.00 0.00 4.61
3856 5231 0.107081 ACCGTCGAAAATCACCCACA 59.893 50.000 0.00 0.00 0.00 4.17
3859 5234 0.110373 GTCGAAAATCACCCACACGC 60.110 55.000 0.00 0.00 0.00 5.34
3863 5238 3.842925 AAATCACCCACACGCCGCT 62.843 57.895 0.00 0.00 0.00 5.52
3881 5256 2.258013 TGCCCGTGCGGAAGAAAAG 61.258 57.895 12.71 0.00 41.78 2.27
3882 5257 2.978018 GCCCGTGCGGAAGAAAAGG 61.978 63.158 12.71 0.00 37.50 3.11
3883 5258 2.561373 CCGTGCGGAAGAAAAGGC 59.439 61.111 4.35 0.00 37.50 4.35
3888 5263 1.303317 GCGGAAGAAAAGGCTGGGA 60.303 57.895 0.00 0.00 0.00 4.37
3916 5291 1.583054 AACACACCGAGTTCAAGCTC 58.417 50.000 0.00 0.00 0.00 4.09
3926 5301 2.238395 GAGTTCAAGCTCCTCCTCCAAT 59.762 50.000 0.00 0.00 0.00 3.16
3927 5302 2.238395 AGTTCAAGCTCCTCCTCCAATC 59.762 50.000 0.00 0.00 0.00 2.67
3928 5303 0.826715 TCAAGCTCCTCCTCCAATCG 59.173 55.000 0.00 0.00 0.00 3.34
3930 5305 1.977293 AAGCTCCTCCTCCAATCGCC 61.977 60.000 0.00 0.00 0.00 5.54
3931 5306 2.735772 GCTCCTCCTCCAATCGCCA 61.736 63.158 0.00 0.00 0.00 5.69
3946 5321 4.820744 CCACAATGGCCTCCGGGG 62.821 72.222 3.32 0.00 38.36 5.73
3968 5343 1.302285 CCACTGCCTCTCCAGCAAT 59.698 57.895 0.00 0.00 40.35 3.56
3974 5349 2.679092 CTCTCCAGCAATGGCCCA 59.321 61.111 0.00 0.00 42.56 5.36
4076 5451 4.499183 GCGAAGAAGAAGATGAAGAAGGA 58.501 43.478 0.00 0.00 0.00 3.36
4079 5454 6.105333 CGAAGAAGAAGATGAAGAAGGACAT 58.895 40.000 0.00 0.00 0.00 3.06
4082 5457 8.785329 AAGAAGAAGATGAAGAAGGACATAAC 57.215 34.615 0.00 0.00 0.00 1.89
4090 5465 1.549170 AGAAGGACATAACGACGCCTT 59.451 47.619 2.35 2.35 41.39 4.35
4091 5466 1.659098 GAAGGACATAACGACGCCTTG 59.341 52.381 6.88 0.00 38.96 3.61
4095 5470 0.734942 ACATAACGACGCCTTGTCCG 60.735 55.000 0.00 0.00 45.23 4.79
4096 5471 0.734942 CATAACGACGCCTTGTCCGT 60.735 55.000 0.00 0.00 45.23 4.69
4098 5473 1.794151 TAACGACGCCTTGTCCGTGA 61.794 55.000 0.00 0.00 45.23 4.35
4100 5475 2.737376 GACGCCTTGTCCGTGACC 60.737 66.667 0.00 0.00 42.04 4.02
4101 5476 4.657824 ACGCCTTGTCCGTGACCG 62.658 66.667 2.23 1.68 37.56 4.79
4102 5477 4.351938 CGCCTTGTCCGTGACCGA 62.352 66.667 2.23 0.00 35.63 4.69
4103 5478 2.737376 GCCTTGTCCGTGACCGAC 60.737 66.667 0.00 0.00 35.63 4.79
4114 5489 2.887568 GACCGACGCCTCATGCAG 60.888 66.667 0.00 0.00 41.33 4.41
4117 5492 2.104928 CGACGCCTCATGCAGCTA 59.895 61.111 0.00 0.00 41.33 3.32
4126 5501 4.899239 ATGCAGCTACTCCGGCGC 62.899 66.667 0.00 0.00 34.52 6.53
4133 5508 4.229073 TACTCCGGCGCCCCCTAT 62.229 66.667 23.46 5.39 0.00 2.57
4145 5520 1.228675 CCCCTATGGCCATTGCTCC 60.229 63.158 26.37 0.00 37.74 4.70
4146 5521 1.538167 CCCTATGGCCATTGCTCCA 59.462 57.895 26.37 3.01 37.74 3.86
4187 5562 3.736100 CAACAAGCATCGCGGCCA 61.736 61.111 6.13 0.00 0.00 5.36
4188 5563 3.737172 AACAAGCATCGCGGCCAC 61.737 61.111 6.13 0.00 0.00 5.01
4201 5576 3.050275 GCCACCCAAGTGCTCGAC 61.050 66.667 0.00 0.00 43.09 4.20
4223 5598 6.584185 ACGAAATGCCTACAAGGTAAAAAT 57.416 33.333 0.00 0.00 37.80 1.82
4225 5600 8.113173 ACGAAATGCCTACAAGGTAAAAATAA 57.887 30.769 0.00 0.00 37.80 1.40
4226 5601 8.578151 ACGAAATGCCTACAAGGTAAAAATAAA 58.422 29.630 0.00 0.00 37.80 1.40
4233 5608 9.285770 GCCTACAAGGTAAAAATAAATTTCTCG 57.714 33.333 0.00 0.00 37.80 4.04
4234 5609 9.783256 CCTACAAGGTAAAAATAAATTTCTCGG 57.217 33.333 0.00 0.00 0.00 4.63
4235 5610 9.285770 CTACAAGGTAAAAATAAATTTCTCGGC 57.714 33.333 0.00 0.00 0.00 5.54
4236 5611 7.094631 ACAAGGTAAAAATAAATTTCTCGGCC 58.905 34.615 0.00 0.00 0.00 6.13
4237 5612 6.844097 AGGTAAAAATAAATTTCTCGGCCA 57.156 33.333 2.24 0.00 0.00 5.36
4238 5613 7.418337 AGGTAAAAATAAATTTCTCGGCCAT 57.582 32.000 2.24 0.00 0.00 4.40
4239 5614 7.264947 AGGTAAAAATAAATTTCTCGGCCATG 58.735 34.615 2.24 0.00 0.00 3.66
4240 5615 6.478673 GGTAAAAATAAATTTCTCGGCCATGG 59.521 38.462 7.63 7.63 0.00 3.66
4241 5616 5.675684 AAAATAAATTTCTCGGCCATGGT 57.324 34.783 14.67 0.00 0.00 3.55
4242 5617 4.654091 AATAAATTTCTCGGCCATGGTG 57.346 40.909 14.67 6.70 0.00 4.17
4243 5618 2.214376 AAATTTCTCGGCCATGGTGA 57.786 45.000 14.67 10.98 0.00 4.02
4244 5619 2.442236 AATTTCTCGGCCATGGTGAT 57.558 45.000 14.67 0.00 0.00 3.06
4245 5620 2.442236 ATTTCTCGGCCATGGTGATT 57.558 45.000 14.67 0.00 0.00 2.57
4246 5621 1.462616 TTTCTCGGCCATGGTGATTG 58.537 50.000 14.67 1.66 0.00 2.67
4247 5622 0.327924 TTCTCGGCCATGGTGATTGT 59.672 50.000 14.67 0.00 0.00 2.71
4248 5623 0.327924 TCTCGGCCATGGTGATTGTT 59.672 50.000 14.67 0.00 0.00 2.83
4249 5624 1.176527 CTCGGCCATGGTGATTGTTT 58.823 50.000 14.67 0.00 0.00 2.83
4250 5625 0.887247 TCGGCCATGGTGATTGTTTG 59.113 50.000 14.67 0.00 0.00 2.93
4251 5626 0.602562 CGGCCATGGTGATTGTTTGT 59.397 50.000 14.67 0.00 0.00 2.83
4256 5631 2.824936 CCATGGTGATTGTTTGTAGCCA 59.175 45.455 2.57 0.00 0.00 4.75
4267 5642 3.438781 TGTTTGTAGCCAATCGGTGATTC 59.561 43.478 0.00 0.00 28.87 2.52
4270 5645 3.950397 TGTAGCCAATCGGTGATTCTTT 58.050 40.909 0.00 0.00 28.87 2.52
4275 5650 3.689649 GCCAATCGGTGATTCTTTGTAGT 59.310 43.478 0.00 0.00 28.87 2.73
4276 5651 4.201822 GCCAATCGGTGATTCTTTGTAGTC 60.202 45.833 0.00 0.00 28.87 2.59
4278 5653 3.928727 TCGGTGATTCTTTGTAGTCGT 57.071 42.857 0.00 0.00 0.00 4.34
4302 5677 7.254852 GTTGGTGATGTAGTTTCTTTGTTTCA 58.745 34.615 0.00 0.00 0.00 2.69
4308 5683 8.681806 TGATGTAGTTTCTTTGTTTCATTGTCA 58.318 29.630 0.00 0.00 0.00 3.58
4331 5706 2.158959 GCGGAGATGAACACGACCG 61.159 63.158 0.00 0.00 42.63 4.79
4336 5711 2.251893 GAGATGAACACGACCGAGTTC 58.748 52.381 20.24 20.24 42.94 3.01
4337 5712 1.887198 AGATGAACACGACCGAGTTCT 59.113 47.619 24.65 14.90 43.02 3.01
4339 5714 3.504906 AGATGAACACGACCGAGTTCTTA 59.495 43.478 24.65 12.31 43.02 2.10
4340 5715 3.278367 TGAACACGACCGAGTTCTTAG 57.722 47.619 24.65 0.00 43.02 2.18
4341 5716 1.984297 GAACACGACCGAGTTCTTAGC 59.016 52.381 19.93 0.67 40.70 3.09
4342 5717 0.956633 ACACGACCGAGTTCTTAGCA 59.043 50.000 0.00 0.00 0.00 3.49
4343 5718 1.544691 ACACGACCGAGTTCTTAGCAT 59.455 47.619 0.00 0.00 0.00 3.79
4344 5719 2.186076 CACGACCGAGTTCTTAGCATC 58.814 52.381 0.00 0.00 0.00 3.91
4346 5721 1.134367 CGACCGAGTTCTTAGCATCCA 59.866 52.381 0.00 0.00 0.00 3.41
4347 5722 2.796383 CGACCGAGTTCTTAGCATCCAG 60.796 54.545 0.00 0.00 0.00 3.86
4348 5723 1.134670 ACCGAGTTCTTAGCATCCAGC 60.135 52.381 0.00 0.00 46.19 4.85
4357 5732 2.045926 GCATCCAGCGGTCAAGGT 60.046 61.111 0.00 0.00 0.00 3.50
4358 5733 2.109126 GCATCCAGCGGTCAAGGTC 61.109 63.158 0.00 0.00 0.00 3.85
4359 5734 1.296392 CATCCAGCGGTCAAGGTCA 59.704 57.895 0.00 0.00 0.00 4.02
4360 5735 1.021390 CATCCAGCGGTCAAGGTCAC 61.021 60.000 0.00 0.00 0.00 3.67
4361 5736 1.194781 ATCCAGCGGTCAAGGTCACT 61.195 55.000 0.00 0.00 0.00 3.41
4362 5737 1.669115 CCAGCGGTCAAGGTCACTG 60.669 63.158 0.00 0.00 0.00 3.66
4363 5738 1.069765 CAGCGGTCAAGGTCACTGT 59.930 57.895 0.00 0.00 0.00 3.55
4364 5739 0.317160 CAGCGGTCAAGGTCACTGTA 59.683 55.000 0.00 0.00 0.00 2.74
4365 5740 1.045407 AGCGGTCAAGGTCACTGTAA 58.955 50.000 0.00 0.00 0.00 2.41
4366 5741 1.145803 GCGGTCAAGGTCACTGTAAC 58.854 55.000 0.00 0.00 0.00 2.50
4367 5742 1.415374 CGGTCAAGGTCACTGTAACG 58.585 55.000 0.00 0.00 0.00 3.18
4368 5743 1.145803 GGTCAAGGTCACTGTAACGC 58.854 55.000 0.00 0.00 0.00 4.84
4369 5744 1.145803 GTCAAGGTCACTGTAACGCC 58.854 55.000 0.00 0.00 0.00 5.68
4370 5745 0.034337 TCAAGGTCACTGTAACGCCC 59.966 55.000 0.00 0.00 0.00 6.13
4371 5746 1.005394 AAGGTCACTGTAACGCCCG 60.005 57.895 0.00 0.00 0.00 6.13
4372 5747 2.433664 GGTCACTGTAACGCCCGG 60.434 66.667 0.00 0.00 0.00 5.73
4373 5748 2.652530 GTCACTGTAACGCCCGGA 59.347 61.111 0.73 0.00 0.00 5.14
4374 5749 1.217244 GTCACTGTAACGCCCGGAT 59.783 57.895 0.73 0.00 0.00 4.18
4375 5750 0.457035 GTCACTGTAACGCCCGGATA 59.543 55.000 0.73 0.00 0.00 2.59
4376 5751 1.135024 GTCACTGTAACGCCCGGATAA 60.135 52.381 0.73 0.00 0.00 1.75
4377 5752 1.758280 TCACTGTAACGCCCGGATAAT 59.242 47.619 0.73 0.00 0.00 1.28
4378 5753 2.132762 CACTGTAACGCCCGGATAATC 58.867 52.381 0.73 0.00 0.00 1.75
4379 5754 2.037144 ACTGTAACGCCCGGATAATCT 58.963 47.619 0.73 0.00 0.00 2.40
4380 5755 2.433239 ACTGTAACGCCCGGATAATCTT 59.567 45.455 0.73 0.00 0.00 2.40
4381 5756 2.800544 CTGTAACGCCCGGATAATCTTG 59.199 50.000 0.73 0.00 0.00 3.02
4382 5757 1.529865 GTAACGCCCGGATAATCTTGC 59.470 52.381 0.73 0.00 0.00 4.01
4383 5758 0.180406 AACGCCCGGATAATCTTGCT 59.820 50.000 0.73 0.00 0.00 3.91
4384 5759 1.045407 ACGCCCGGATAATCTTGCTA 58.955 50.000 0.73 0.00 0.00 3.49
4385 5760 1.270147 ACGCCCGGATAATCTTGCTAC 60.270 52.381 0.73 0.00 0.00 3.58
4386 5761 1.270094 CGCCCGGATAATCTTGCTACA 60.270 52.381 0.73 0.00 0.00 2.74
4387 5762 2.417719 GCCCGGATAATCTTGCTACAG 58.582 52.381 0.73 0.00 0.00 2.74
4388 5763 2.224305 GCCCGGATAATCTTGCTACAGT 60.224 50.000 0.73 0.00 0.00 3.55
4389 5764 3.006537 GCCCGGATAATCTTGCTACAGTA 59.993 47.826 0.73 0.00 0.00 2.74
4390 5765 4.502604 GCCCGGATAATCTTGCTACAGTAA 60.503 45.833 0.73 0.00 0.00 2.24
4391 5766 5.794894 CCCGGATAATCTTGCTACAGTAAT 58.205 41.667 0.73 0.00 0.00 1.89
4392 5767 5.869888 CCCGGATAATCTTGCTACAGTAATC 59.130 44.000 0.73 0.00 0.00 1.75
4393 5768 5.869888 CCGGATAATCTTGCTACAGTAATCC 59.130 44.000 0.00 0.00 0.00 3.01
4394 5769 5.869888 CGGATAATCTTGCTACAGTAATCCC 59.130 44.000 0.00 0.00 0.00 3.85
4395 5770 6.518369 CGGATAATCTTGCTACAGTAATCCCA 60.518 42.308 0.00 0.00 0.00 4.37
4396 5771 6.651225 GGATAATCTTGCTACAGTAATCCCAC 59.349 42.308 0.00 0.00 0.00 4.61
4397 5772 3.520290 TCTTGCTACAGTAATCCCACG 57.480 47.619 0.00 0.00 0.00 4.94
4398 5773 1.933853 CTTGCTACAGTAATCCCACGC 59.066 52.381 0.00 0.00 0.00 5.34
4399 5774 1.191535 TGCTACAGTAATCCCACGCT 58.808 50.000 0.00 0.00 0.00 5.07
4400 5775 2.380941 TGCTACAGTAATCCCACGCTA 58.619 47.619 0.00 0.00 0.00 4.26
4401 5776 2.761767 TGCTACAGTAATCCCACGCTAA 59.238 45.455 0.00 0.00 0.00 3.09
4402 5777 3.386726 TGCTACAGTAATCCCACGCTAAT 59.613 43.478 0.00 0.00 0.00 1.73
4403 5778 3.988517 GCTACAGTAATCCCACGCTAATC 59.011 47.826 0.00 0.00 0.00 1.75
4404 5779 4.500887 GCTACAGTAATCCCACGCTAATCA 60.501 45.833 0.00 0.00 0.00 2.57
4405 5780 4.689612 ACAGTAATCCCACGCTAATCAT 57.310 40.909 0.00 0.00 0.00 2.45
4406 5781 4.380531 ACAGTAATCCCACGCTAATCATG 58.619 43.478 0.00 0.00 0.00 3.07
4407 5782 3.748048 CAGTAATCCCACGCTAATCATGG 59.252 47.826 0.00 0.00 0.00 3.66
4408 5783 1.609208 AATCCCACGCTAATCATGGC 58.391 50.000 0.00 0.00 31.66 4.40
4409 5784 0.473755 ATCCCACGCTAATCATGGCA 59.526 50.000 0.00 0.00 31.43 4.92
4410 5785 0.463654 TCCCACGCTAATCATGGCAC 60.464 55.000 0.00 0.00 31.43 5.01
4411 5786 1.643292 CCACGCTAATCATGGCACG 59.357 57.895 0.00 0.00 31.43 5.34
4412 5787 1.089481 CCACGCTAATCATGGCACGT 61.089 55.000 0.00 0.00 31.43 4.49
4413 5788 0.301687 CACGCTAATCATGGCACGTC 59.698 55.000 0.00 0.00 31.43 4.34
4414 5789 0.108377 ACGCTAATCATGGCACGTCA 60.108 50.000 0.00 0.00 31.43 4.35
4415 5790 1.220529 CGCTAATCATGGCACGTCAT 58.779 50.000 0.00 0.00 31.43 3.06
4416 5791 1.193203 CGCTAATCATGGCACGTCATC 59.807 52.381 0.00 0.00 31.43 2.92
4417 5792 1.532868 GCTAATCATGGCACGTCATCC 59.467 52.381 0.00 0.00 32.44 3.51
4418 5793 2.146342 CTAATCATGGCACGTCATCCC 58.854 52.381 0.00 0.00 0.00 3.85
4419 5794 0.815213 AATCATGGCACGTCATCCCG 60.815 55.000 0.00 0.00 0.00 5.14
4420 5795 1.685355 ATCATGGCACGTCATCCCGA 61.685 55.000 0.00 0.00 0.00 5.14
4421 5796 1.227645 CATGGCACGTCATCCCGAT 60.228 57.895 0.00 0.00 0.00 4.18
4422 5797 0.815213 CATGGCACGTCATCCCGATT 60.815 55.000 0.00 0.00 0.00 3.34
4423 5798 0.756294 ATGGCACGTCATCCCGATTA 59.244 50.000 0.00 0.00 0.00 1.75
4424 5799 0.179094 TGGCACGTCATCCCGATTAC 60.179 55.000 0.00 0.00 0.00 1.89
4425 5800 0.104304 GGCACGTCATCCCGATTACT 59.896 55.000 0.00 0.00 0.00 2.24
4426 5801 1.209128 GCACGTCATCCCGATTACTG 58.791 55.000 0.00 0.00 0.00 2.74
4427 5802 1.470979 GCACGTCATCCCGATTACTGT 60.471 52.381 0.00 0.00 0.00 3.55
4428 5803 2.888594 CACGTCATCCCGATTACTGTT 58.111 47.619 0.00 0.00 0.00 3.16
4429 5804 2.603110 CACGTCATCCCGATTACTGTTG 59.397 50.000 0.00 0.00 0.00 3.33
4430 5805 1.593006 CGTCATCCCGATTACTGTTGC 59.407 52.381 0.00 0.00 0.00 4.17
4431 5806 2.738643 CGTCATCCCGATTACTGTTGCT 60.739 50.000 0.00 0.00 0.00 3.91
4432 5807 3.490249 CGTCATCCCGATTACTGTTGCTA 60.490 47.826 0.00 0.00 0.00 3.49
4433 5808 4.632153 GTCATCCCGATTACTGTTGCTAT 58.368 43.478 0.00 0.00 0.00 2.97
4434 5809 4.686554 GTCATCCCGATTACTGTTGCTATC 59.313 45.833 0.00 0.00 0.00 2.08
4435 5810 3.746045 TCCCGATTACTGTTGCTATCC 57.254 47.619 0.00 0.00 0.00 2.59
4436 5811 3.305720 TCCCGATTACTGTTGCTATCCT 58.694 45.455 0.00 0.00 0.00 3.24
4437 5812 3.321111 TCCCGATTACTGTTGCTATCCTC 59.679 47.826 0.00 0.00 0.00 3.71
4438 5813 3.309388 CCGATTACTGTTGCTATCCTCG 58.691 50.000 0.00 0.00 0.00 4.63
4439 5814 3.004419 CCGATTACTGTTGCTATCCTCGA 59.996 47.826 0.00 0.00 0.00 4.04
4440 5815 4.499188 CCGATTACTGTTGCTATCCTCGAA 60.499 45.833 0.00 0.00 0.00 3.71
4441 5816 5.041287 CGATTACTGTTGCTATCCTCGAAA 58.959 41.667 0.00 0.00 0.00 3.46
4442 5817 5.692204 CGATTACTGTTGCTATCCTCGAAAT 59.308 40.000 0.00 0.00 0.00 2.17
4443 5818 6.861572 CGATTACTGTTGCTATCCTCGAAATA 59.138 38.462 0.00 0.00 0.00 1.40
4444 5819 7.381408 CGATTACTGTTGCTATCCTCGAAATAA 59.619 37.037 0.00 0.00 0.00 1.40
4445 5820 9.209175 GATTACTGTTGCTATCCTCGAAATAAT 57.791 33.333 0.00 0.00 0.00 1.28
4446 5821 8.958119 TTACTGTTGCTATCCTCGAAATAATT 57.042 30.769 0.00 0.00 0.00 1.40
4447 5822 7.484035 ACTGTTGCTATCCTCGAAATAATTC 57.516 36.000 0.00 0.00 0.00 2.17
4464 5839 8.804688 AAATAATTCGAAACCGTTCAAATTCA 57.195 26.923 0.00 0.00 33.44 2.57
4465 5840 8.804688 AATAATTCGAAACCGTTCAAATTCAA 57.195 26.923 0.00 0.00 33.44 2.69
4466 5841 8.804688 ATAATTCGAAACCGTTCAAATTCAAA 57.195 26.923 0.00 0.00 33.44 2.69
4467 5842 7.527084 AATTCGAAACCGTTCAAATTCAAAA 57.473 28.000 0.00 0.00 26.22 2.44
4468 5843 7.707774 ATTCGAAACCGTTCAAATTCAAAAT 57.292 28.000 0.00 0.00 32.89 1.82
4469 5844 7.527084 TTCGAAACCGTTCAAATTCAAAATT 57.473 28.000 0.00 0.00 32.89 1.82
4470 5845 7.155858 TCGAAACCGTTCAAATTCAAAATTC 57.844 32.000 0.00 0.00 32.89 2.17
4471 5846 6.752351 TCGAAACCGTTCAAATTCAAAATTCA 59.248 30.769 0.00 0.00 32.89 2.57
4472 5847 7.275779 TCGAAACCGTTCAAATTCAAAATTCAA 59.724 29.630 0.00 0.00 32.89 2.69
4473 5848 7.900352 CGAAACCGTTCAAATTCAAAATTCAAA 59.100 29.630 0.00 0.00 32.89 2.69
4474 5849 9.715123 GAAACCGTTCAAATTCAAAATTCAAAT 57.285 25.926 0.00 0.00 33.61 2.32
4476 5851 9.500864 AACCGTTCAAATTCAAAATTCAAATTG 57.499 25.926 0.00 0.00 0.00 2.32
4477 5852 8.887717 ACCGTTCAAATTCAAAATTCAAATTGA 58.112 25.926 0.00 0.00 33.93 2.57
4478 5853 9.881529 CCGTTCAAATTCAAAATTCAAATTGAT 57.118 25.926 0.00 0.00 35.63 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.292306 AGGACAACAGAGGTTTTGGGATAT 59.708 41.667 0.00 0.00 34.21 1.63
168 173 2.464459 GCACAGGCGTCTGGTATGC 61.464 63.158 22.98 18.20 44.99 3.14
169 174 3.799753 GCACAGGCGTCTGGTATG 58.200 61.111 22.98 11.90 44.99 2.39
195 201 2.285083 ACTTTGTATGTGTGTGTGCGT 58.715 42.857 0.00 0.00 0.00 5.24
283 1548 5.944049 AATTACGCTACAGTACAATGTCG 57.056 39.130 0.00 0.00 34.56 4.35
333 1605 1.282157 GGTAACCACCTCAGGCATCTT 59.718 52.381 0.00 0.00 42.11 2.40
409 1681 5.009510 AGTCAATGGATCGTCATCAGTAGAG 59.990 44.000 0.00 0.00 0.00 2.43
410 1682 4.889995 AGTCAATGGATCGTCATCAGTAGA 59.110 41.667 0.00 0.00 0.00 2.59
437 1709 1.657181 GACACCTTGCAAAACCGCG 60.657 57.895 0.00 0.00 33.35 6.46
534 1806 6.412362 AGATAATCTCACTGTATGGACACC 57.588 41.667 0.00 0.00 0.00 4.16
567 1840 2.281517 GTAGCGCTGACTCTCTAGACA 58.718 52.381 22.90 0.00 0.00 3.41
818 2094 0.670854 GCTCACTGGAGGTTCCGTTC 60.671 60.000 0.00 0.00 40.17 3.95
836 2112 5.968387 AGCATCGTGTAATAAACTAGTGC 57.032 39.130 0.00 0.00 0.00 4.40
892 2168 1.162181 ATGCATCAACGGCGATCCAG 61.162 55.000 16.62 0.96 0.00 3.86
964 2245 4.371624 TGATTTGGACAGGTCAGTGAAT 57.628 40.909 0.00 0.00 0.00 2.57
1278 2577 3.160585 CCCTTGCTGTGGACAGGA 58.839 61.111 8.82 2.76 43.94 3.86
1341 2640 3.807538 GGCTCGCCGTCGTAGTCA 61.808 66.667 0.00 0.00 36.96 3.41
1506 2807 3.785499 CGAGTCGTCGCGGTGAGA 61.785 66.667 6.13 0.00 39.88 3.27
2419 3750 3.350612 TTTTCCCGCGGCGTCAAG 61.351 61.111 22.85 4.77 0.00 3.02
2420 3751 3.652000 GTTTTCCCGCGGCGTCAA 61.652 61.111 22.85 10.30 0.00 3.18
2528 3859 4.309950 ACCGCGTGAACAGTCCCC 62.310 66.667 4.92 0.00 0.00 4.81
2598 3929 4.167268 CGTAGCTGTACCTCTGAAAACTC 58.833 47.826 0.00 0.00 0.00 3.01
2679 4010 2.108278 GAACGCCCCTGTACACCACT 62.108 60.000 0.00 0.00 0.00 4.00
2907 4238 2.049802 TCGCCGTCTTCGTCCAAC 60.050 61.111 0.00 0.00 35.01 3.77
3045 4388 1.837439 TCCAGCAATATGTTCTCCGGT 59.163 47.619 0.00 0.00 0.00 5.28
3192 4535 1.821759 CCATTCCGGCGCCATGTAA 60.822 57.895 28.98 14.53 0.00 2.41
3279 4622 2.526110 GCCACCCTGACCCCTTTT 59.474 61.111 0.00 0.00 0.00 2.27
3337 4680 2.743718 CACCTTCTCGGCCACAGT 59.256 61.111 2.24 0.00 35.61 3.55
3344 4687 1.815421 CCGGAATGCACCTTCTCGG 60.815 63.158 0.00 12.46 34.77 4.63
3352 4695 2.103538 CATGCTGCCGGAATGCAC 59.896 61.111 16.48 0.00 39.63 4.57
3367 4710 3.432749 CGGTCATCCACAAGATCTTCCAT 60.433 47.826 4.57 0.00 30.59 3.41
3372 4715 0.179000 GCCGGTCATCCACAAGATCT 59.821 55.000 1.90 0.00 30.59 2.75
3581 4925 8.006298 TGAATTACTGATCGGCCAAAATAAAT 57.994 30.769 2.24 0.00 0.00 1.40
3641 5004 5.700846 CAGCATAGTATTCGGAGAATACGT 58.299 41.667 20.46 13.82 45.90 3.57
3659 5034 2.076863 GAAGACTACGTTTGGCAGCAT 58.923 47.619 0.00 0.00 0.00 3.79
3664 5039 1.632948 GGGCGAAGACTACGTTTGGC 61.633 60.000 0.00 0.00 32.70 4.52
3667 5042 1.294459 GGGGGCGAAGACTACGTTT 59.706 57.895 0.00 0.00 32.70 3.60
3679 5054 4.341502 CGTGCACTTTTGGGGGCG 62.342 66.667 16.19 0.00 0.00 6.13
3681 5056 1.826054 TGACGTGCACTTTTGGGGG 60.826 57.895 16.19 0.00 0.00 5.40
3696 5071 2.091744 GGTTAGAAACGCGCTAAGTGAC 59.908 50.000 5.73 0.00 0.00 3.67
3706 5081 2.070783 TGTGGATTCGGTTAGAAACGC 58.929 47.619 0.00 0.00 42.91 4.84
3707 5082 4.939509 ATTGTGGATTCGGTTAGAAACG 57.060 40.909 0.00 0.00 42.91 3.60
3708 5083 7.413767 GGTCTTATTGTGGATTCGGTTAGAAAC 60.414 40.741 0.00 0.00 42.91 2.78
3709 5084 6.596497 GGTCTTATTGTGGATTCGGTTAGAAA 59.404 38.462 0.00 0.00 42.91 2.52
3710 5085 6.110707 GGTCTTATTGTGGATTCGGTTAGAA 58.889 40.000 0.00 0.00 43.93 2.10
3711 5086 5.667466 GGTCTTATTGTGGATTCGGTTAGA 58.333 41.667 0.00 0.00 0.00 2.10
3712 5087 4.506654 CGGTCTTATTGTGGATTCGGTTAG 59.493 45.833 0.00 0.00 0.00 2.34
3713 5088 4.081531 ACGGTCTTATTGTGGATTCGGTTA 60.082 41.667 0.00 0.00 0.00 2.85
3714 5089 3.267483 CGGTCTTATTGTGGATTCGGTT 58.733 45.455 0.00 0.00 0.00 4.44
3715 5090 2.235402 ACGGTCTTATTGTGGATTCGGT 59.765 45.455 0.00 0.00 0.00 4.69
3716 5091 2.607635 CACGGTCTTATTGTGGATTCGG 59.392 50.000 0.00 0.00 0.00 4.30
3717 5092 3.517602 TCACGGTCTTATTGTGGATTCG 58.482 45.455 0.00 0.00 34.43 3.34
3718 5093 4.332819 CCTTCACGGTCTTATTGTGGATTC 59.667 45.833 0.00 0.00 34.43 2.52
3719 5094 4.019681 TCCTTCACGGTCTTATTGTGGATT 60.020 41.667 0.00 0.00 34.43 3.01
3720 5095 3.517901 TCCTTCACGGTCTTATTGTGGAT 59.482 43.478 0.00 0.00 34.43 3.41
3721 5096 2.901192 TCCTTCACGGTCTTATTGTGGA 59.099 45.455 0.00 0.00 34.43 4.02
3722 5097 3.262420 CTCCTTCACGGTCTTATTGTGG 58.738 50.000 0.00 0.00 34.43 4.17
3723 5098 3.056107 TCCTCCTTCACGGTCTTATTGTG 60.056 47.826 0.00 0.00 34.96 3.33
3724 5099 3.170717 TCCTCCTTCACGGTCTTATTGT 58.829 45.455 0.00 0.00 0.00 2.71
3725 5100 3.887621 TCCTCCTTCACGGTCTTATTG 57.112 47.619 0.00 0.00 0.00 1.90
3726 5101 6.555463 TTTATCCTCCTTCACGGTCTTATT 57.445 37.500 0.00 0.00 0.00 1.40
3727 5102 6.749036 ATTTATCCTCCTTCACGGTCTTAT 57.251 37.500 0.00 0.00 0.00 1.73
3728 5103 6.555463 AATTTATCCTCCTTCACGGTCTTA 57.445 37.500 0.00 0.00 0.00 2.10
3729 5104 5.429130 GAATTTATCCTCCTTCACGGTCTT 58.571 41.667 0.00 0.00 0.00 3.01
3730 5105 4.441634 CGAATTTATCCTCCTTCACGGTCT 60.442 45.833 0.00 0.00 0.00 3.85
3731 5106 3.802685 CGAATTTATCCTCCTTCACGGTC 59.197 47.826 0.00 0.00 0.00 4.79
3732 5107 3.449737 TCGAATTTATCCTCCTTCACGGT 59.550 43.478 0.00 0.00 0.00 4.83
3733 5108 4.054780 TCGAATTTATCCTCCTTCACGG 57.945 45.455 0.00 0.00 0.00 4.94
3734 5109 7.385205 ACATTATCGAATTTATCCTCCTTCACG 59.615 37.037 0.00 0.00 0.00 4.35
3735 5110 8.608844 ACATTATCGAATTTATCCTCCTTCAC 57.391 34.615 0.00 0.00 0.00 3.18
3755 5130 9.880157 GGACAACTTTTACTCCACTATACATTA 57.120 33.333 0.00 0.00 0.00 1.90
3756 5131 8.603304 AGGACAACTTTTACTCCACTATACATT 58.397 33.333 0.00 0.00 0.00 2.71
3757 5132 8.147244 AGGACAACTTTTACTCCACTATACAT 57.853 34.615 0.00 0.00 0.00 2.29
3758 5133 7.310237 GGAGGACAACTTTTACTCCACTATACA 60.310 40.741 1.68 0.00 45.45 2.29
3759 5134 7.040494 GGAGGACAACTTTTACTCCACTATAC 58.960 42.308 1.68 0.00 45.45 1.47
3760 5135 7.179076 GGAGGACAACTTTTACTCCACTATA 57.821 40.000 1.68 0.00 45.45 1.31
3761 5136 6.051179 GGAGGACAACTTTTACTCCACTAT 57.949 41.667 1.68 0.00 45.45 2.12
3762 5137 5.479124 GGAGGACAACTTTTACTCCACTA 57.521 43.478 1.68 0.00 45.45 2.74
3763 5138 4.353383 GGAGGACAACTTTTACTCCACT 57.647 45.455 1.68 0.00 45.45 4.00
3766 5141 4.081322 TGTGGAGGACAACTTTTACTCC 57.919 45.455 0.00 0.00 46.14 3.85
3767 5142 4.695928 GGATGTGGAGGACAACTTTTACTC 59.304 45.833 0.00 0.00 38.36 2.59
3768 5143 4.652822 GGATGTGGAGGACAACTTTTACT 58.347 43.478 0.00 0.00 38.36 2.24
3769 5144 3.435671 CGGATGTGGAGGACAACTTTTAC 59.564 47.826 0.00 0.00 38.36 2.01
3770 5145 3.558321 CCGGATGTGGAGGACAACTTTTA 60.558 47.826 0.00 0.00 38.36 1.52
3771 5146 2.504367 CGGATGTGGAGGACAACTTTT 58.496 47.619 0.00 0.00 38.36 2.27
3772 5147 1.271379 CCGGATGTGGAGGACAACTTT 60.271 52.381 0.00 0.00 38.36 2.66
3773 5148 0.324943 CCGGATGTGGAGGACAACTT 59.675 55.000 0.00 0.00 38.36 2.66
3774 5149 1.983224 CCGGATGTGGAGGACAACT 59.017 57.895 0.00 0.00 38.36 3.16
3775 5150 1.745489 GCCGGATGTGGAGGACAAC 60.745 63.158 5.05 0.00 38.36 3.32
3776 5151 1.918293 AGCCGGATGTGGAGGACAA 60.918 57.895 5.05 0.00 38.36 3.18
3777 5152 2.284625 AGCCGGATGTGGAGGACA 60.285 61.111 5.05 0.00 39.53 4.02
3778 5153 2.187946 CAGCCGGATGTGGAGGAC 59.812 66.667 12.68 0.00 0.00 3.85
3779 5154 3.083349 CCAGCCGGATGTGGAGGA 61.083 66.667 20.04 0.00 35.67 3.71
3780 5155 1.987807 ATTCCAGCCGGATGTGGAGG 61.988 60.000 20.04 2.22 43.80 4.30
3781 5156 0.816825 CATTCCAGCCGGATGTGGAG 60.817 60.000 20.04 2.78 43.80 3.86
3782 5157 1.224315 CATTCCAGCCGGATGTGGA 59.776 57.895 20.04 17.07 42.41 4.02
3783 5158 1.825191 CCATTCCAGCCGGATGTGG 60.825 63.158 20.04 16.08 42.41 4.17
3784 5159 0.179009 ATCCATTCCAGCCGGATGTG 60.179 55.000 20.04 10.47 42.41 3.21
3785 5160 1.349026 CTATCCATTCCAGCCGGATGT 59.651 52.381 20.04 0.00 42.41 3.06
3786 5161 1.947678 GCTATCCATTCCAGCCGGATG 60.948 57.143 14.18 14.18 42.41 3.51
3787 5162 0.326264 GCTATCCATTCCAGCCGGAT 59.674 55.000 5.05 0.00 42.41 4.18
3797 5172 1.912862 AAGGGTCTGGGCTATCCATT 58.087 50.000 0.00 0.00 46.01 3.16
3833 5208 1.874872 GGGTGATTTTCGACGGTGAAA 59.125 47.619 0.00 0.79 36.12 2.69
3834 5209 1.202663 TGGGTGATTTTCGACGGTGAA 60.203 47.619 0.00 0.00 0.00 3.18
3835 5210 0.393448 TGGGTGATTTTCGACGGTGA 59.607 50.000 0.00 0.00 0.00 4.02
3837 5212 0.107081 TGTGGGTGATTTTCGACGGT 59.893 50.000 0.00 0.00 0.00 4.83
3839 5214 0.162933 CGTGTGGGTGATTTTCGACG 59.837 55.000 0.00 0.00 0.00 5.12
3840 5215 0.110373 GCGTGTGGGTGATTTTCGAC 60.110 55.000 0.00 0.00 0.00 4.20
3841 5216 1.231958 GGCGTGTGGGTGATTTTCGA 61.232 55.000 0.00 0.00 0.00 3.71
3863 5238 2.203224 TTTTCTTCCGCACGGGCA 60.203 55.556 11.77 0.00 41.24 5.36
3866 5241 1.966451 AGCCTTTTCTTCCGCACGG 60.966 57.895 1.73 1.73 0.00 4.94
3869 5244 1.603455 CCCAGCCTTTTCTTCCGCA 60.603 57.895 0.00 0.00 0.00 5.69
3870 5245 0.893727 TTCCCAGCCTTTTCTTCCGC 60.894 55.000 0.00 0.00 0.00 5.54
3872 5247 2.807676 TCATTCCCAGCCTTTTCTTCC 58.192 47.619 0.00 0.00 0.00 3.46
3900 5275 0.318762 GAGGAGCTTGAACTCGGTGT 59.681 55.000 0.00 0.00 37.57 4.16
3903 5278 0.174617 GAGGAGGAGCTTGAACTCGG 59.825 60.000 0.00 0.00 37.57 4.63
3906 5281 1.734655 TTGGAGGAGGAGCTTGAACT 58.265 50.000 0.00 0.00 0.00 3.01
3916 5291 0.107017 ATTGTGGCGATTGGAGGAGG 60.107 55.000 0.00 0.00 0.00 4.30
3951 5326 1.030488 CCATTGCTGGAGAGGCAGTG 61.030 60.000 0.00 0.00 46.37 3.66
3952 5327 1.302285 CCATTGCTGGAGAGGCAGT 59.698 57.895 0.00 0.00 46.37 4.40
3953 5328 2.119655 GCCATTGCTGGAGAGGCAG 61.120 63.158 8.64 0.00 46.37 4.85
3954 5329 2.044650 GCCATTGCTGGAGAGGCA 60.045 61.111 8.64 0.00 46.37 4.75
4002 5377 1.796459 GTTGGCTTTCGAGCTCGTTTA 59.204 47.619 33.33 18.29 40.80 2.01
4076 5451 0.734942 CGGACAAGGCGTCGTTATGT 60.735 55.000 0.00 0.00 46.42 2.29
4079 5454 1.372004 CACGGACAAGGCGTCGTTA 60.372 57.895 0.00 0.00 46.42 3.18
4082 5457 3.103911 GTCACGGACAAGGCGTCG 61.104 66.667 0.00 0.00 46.42 5.12
4095 5470 3.188786 GCATGAGGCGTCGGTCAC 61.189 66.667 0.00 0.00 0.00 3.67
4104 5479 1.593750 CGGAGTAGCTGCATGAGGC 60.594 63.158 4.12 0.00 45.13 4.70
4108 5483 2.963854 CGCCGGAGTAGCTGCATG 60.964 66.667 5.05 0.00 0.00 4.06
4109 5484 4.899239 GCGCCGGAGTAGCTGCAT 62.899 66.667 5.05 0.00 32.54 3.96
4126 5501 1.228675 GAGCAATGGCCATAGGGGG 60.229 63.158 21.15 7.74 42.56 5.40
4127 5502 1.228675 GGAGCAATGGCCATAGGGG 60.229 63.158 21.15 10.35 42.56 4.79
4128 5503 0.538977 CTGGAGCAATGGCCATAGGG 60.539 60.000 21.15 13.01 42.56 3.53
4162 5537 3.976902 GATGCTTGTTGCCGGCTGC 62.977 63.158 29.70 22.04 42.00 5.25
4184 5559 3.050275 GTCGAGCACTTGGGTGGC 61.050 66.667 0.00 0.00 43.18 5.01
4186 5561 0.878523 TTTCGTCGAGCACTTGGGTG 60.879 55.000 0.00 0.00 45.53 4.61
4187 5562 0.034896 ATTTCGTCGAGCACTTGGGT 59.965 50.000 0.00 0.00 0.00 4.51
4188 5563 0.443869 CATTTCGTCGAGCACTTGGG 59.556 55.000 0.00 0.00 0.00 4.12
4198 5573 1.722011 ACCTTGTAGGCATTTCGTCG 58.278 50.000 0.00 0.00 39.63 5.12
4201 5576 8.973835 TTTATTTTTACCTTGTAGGCATTTCG 57.026 30.769 0.00 0.00 39.63 3.46
4223 5598 3.358111 TCACCATGGCCGAGAAATTTA 57.642 42.857 13.04 0.00 0.00 1.40
4225 5600 2.428171 CAATCACCATGGCCGAGAAATT 59.572 45.455 13.04 0.00 0.00 1.82
4226 5601 2.026641 CAATCACCATGGCCGAGAAAT 58.973 47.619 13.04 0.00 0.00 2.17
4229 5604 0.327924 AACAATCACCATGGCCGAGA 59.672 50.000 13.04 5.40 0.00 4.04
4230 5605 1.135315 CAAACAATCACCATGGCCGAG 60.135 52.381 13.04 0.55 0.00 4.63
4231 5606 0.887247 CAAACAATCACCATGGCCGA 59.113 50.000 13.04 9.53 0.00 5.54
4233 5608 2.417243 GCTACAAACAATCACCATGGCC 60.417 50.000 13.04 0.00 0.00 5.36
4234 5609 2.417243 GGCTACAAACAATCACCATGGC 60.417 50.000 13.04 0.00 0.00 4.40
4235 5610 2.824936 TGGCTACAAACAATCACCATGG 59.175 45.455 11.19 11.19 0.00 3.66
4236 5611 4.517952 TTGGCTACAAACAATCACCATG 57.482 40.909 0.00 0.00 32.66 3.66
4242 5617 3.438781 TCACCGATTGGCTACAAACAATC 59.561 43.478 0.00 7.19 45.82 2.67
4243 5618 3.417101 TCACCGATTGGCTACAAACAAT 58.583 40.909 0.00 0.00 40.55 2.71
4244 5619 2.852449 TCACCGATTGGCTACAAACAA 58.148 42.857 0.00 0.00 40.55 2.83
4245 5620 2.552599 TCACCGATTGGCTACAAACA 57.447 45.000 0.00 0.00 40.55 2.83
4246 5621 3.689649 AGAATCACCGATTGGCTACAAAC 59.310 43.478 0.00 0.00 40.55 2.93
4247 5622 3.950397 AGAATCACCGATTGGCTACAAA 58.050 40.909 0.00 0.00 40.55 2.83
4248 5623 3.627395 AGAATCACCGATTGGCTACAA 57.373 42.857 0.00 0.00 41.59 2.41
4249 5624 3.627395 AAGAATCACCGATTGGCTACA 57.373 42.857 0.00 0.00 39.70 2.74
4250 5625 3.689649 ACAAAGAATCACCGATTGGCTAC 59.310 43.478 0.00 0.00 39.70 3.58
4251 5626 3.950397 ACAAAGAATCACCGATTGGCTA 58.050 40.909 0.00 0.00 39.70 3.93
4256 5631 4.817517 ACGACTACAAAGAATCACCGATT 58.182 39.130 0.00 0.00 34.71 3.34
4267 5642 5.227908 ACTACATCACCAACGACTACAAAG 58.772 41.667 0.00 0.00 0.00 2.77
4270 5645 4.859304 AACTACATCACCAACGACTACA 57.141 40.909 0.00 0.00 0.00 2.74
4275 5650 5.120399 ACAAAGAAACTACATCACCAACGA 58.880 37.500 0.00 0.00 0.00 3.85
4276 5651 5.418310 ACAAAGAAACTACATCACCAACG 57.582 39.130 0.00 0.00 0.00 4.10
4278 5653 7.397892 TGAAACAAAGAAACTACATCACCAA 57.602 32.000 0.00 0.00 0.00 3.67
4302 5677 4.122776 GTTCATCTCCGCACTATGACAAT 58.877 43.478 0.00 0.00 29.64 2.71
4308 5683 1.749063 TCGTGTTCATCTCCGCACTAT 59.251 47.619 0.00 0.00 0.00 2.12
4312 5687 1.080093 GGTCGTGTTCATCTCCGCA 60.080 57.895 0.00 0.00 0.00 5.69
4331 5706 1.134670 ACCGCTGGATGCTAAGAACTC 60.135 52.381 1.50 0.00 40.11 3.01
4336 5711 1.293924 CTTGACCGCTGGATGCTAAG 58.706 55.000 1.50 0.00 40.11 2.18
4337 5712 0.107703 CCTTGACCGCTGGATGCTAA 60.108 55.000 1.50 0.00 40.11 3.09
4339 5714 2.270205 CCTTGACCGCTGGATGCT 59.730 61.111 1.50 0.00 40.11 3.79
4340 5715 2.045926 ACCTTGACCGCTGGATGC 60.046 61.111 1.50 0.00 38.57 3.91
4341 5716 1.021390 GTGACCTTGACCGCTGGATG 61.021 60.000 1.50 0.00 0.00 3.51
4342 5717 1.194781 AGTGACCTTGACCGCTGGAT 61.195 55.000 1.50 0.00 0.00 3.41
4343 5718 1.837051 AGTGACCTTGACCGCTGGA 60.837 57.895 1.50 0.00 0.00 3.86
4344 5719 1.669115 CAGTGACCTTGACCGCTGG 60.669 63.158 0.00 0.00 37.29 4.85
4346 5721 1.045407 TTACAGTGACCTTGACCGCT 58.955 50.000 0.00 0.00 0.00 5.52
4347 5722 1.145803 GTTACAGTGACCTTGACCGC 58.854 55.000 0.00 0.00 0.00 5.68
4348 5723 1.415374 CGTTACAGTGACCTTGACCG 58.585 55.000 0.00 0.00 0.00 4.79
4349 5724 1.145803 GCGTTACAGTGACCTTGACC 58.854 55.000 0.00 0.00 0.00 4.02
4350 5725 1.145803 GGCGTTACAGTGACCTTGAC 58.854 55.000 0.00 0.00 0.00 3.18
4351 5726 0.034337 GGGCGTTACAGTGACCTTGA 59.966 55.000 0.00 0.00 0.00 3.02
4352 5727 1.289109 CGGGCGTTACAGTGACCTTG 61.289 60.000 0.00 0.00 0.00 3.61
4353 5728 1.005394 CGGGCGTTACAGTGACCTT 60.005 57.895 0.00 0.00 0.00 3.50
4354 5729 2.654877 CGGGCGTTACAGTGACCT 59.345 61.111 0.00 0.00 0.00 3.85
4355 5730 2.234913 ATCCGGGCGTTACAGTGACC 62.235 60.000 0.00 0.00 0.00 4.02
4356 5731 0.457035 TATCCGGGCGTTACAGTGAC 59.543 55.000 0.00 0.00 0.00 3.67
4357 5732 1.184431 TTATCCGGGCGTTACAGTGA 58.816 50.000 0.00 0.00 0.00 3.41
4358 5733 2.132762 GATTATCCGGGCGTTACAGTG 58.867 52.381 0.00 0.00 0.00 3.66
4359 5734 2.037144 AGATTATCCGGGCGTTACAGT 58.963 47.619 0.00 0.00 0.00 3.55
4360 5735 2.800544 CAAGATTATCCGGGCGTTACAG 59.199 50.000 0.00 0.00 0.00 2.74
4361 5736 2.828877 CAAGATTATCCGGGCGTTACA 58.171 47.619 0.00 0.00 0.00 2.41
4362 5737 1.529865 GCAAGATTATCCGGGCGTTAC 59.470 52.381 0.00 0.00 0.00 2.50
4363 5738 1.414919 AGCAAGATTATCCGGGCGTTA 59.585 47.619 0.00 0.00 0.00 3.18
4364 5739 0.180406 AGCAAGATTATCCGGGCGTT 59.820 50.000 0.00 0.00 0.00 4.84
4365 5740 1.045407 TAGCAAGATTATCCGGGCGT 58.955 50.000 0.00 0.00 0.00 5.68
4366 5741 1.270094 TGTAGCAAGATTATCCGGGCG 60.270 52.381 0.00 0.00 0.00 6.13
4367 5742 2.224305 ACTGTAGCAAGATTATCCGGGC 60.224 50.000 0.00 0.00 0.00 6.13
4368 5743 3.753294 ACTGTAGCAAGATTATCCGGG 57.247 47.619 0.00 0.00 0.00 5.73
4369 5744 5.869888 GGATTACTGTAGCAAGATTATCCGG 59.130 44.000 0.00 0.00 0.00 5.14
4370 5745 5.869888 GGGATTACTGTAGCAAGATTATCCG 59.130 44.000 0.00 0.00 31.87 4.18
4371 5746 6.651225 GTGGGATTACTGTAGCAAGATTATCC 59.349 42.308 0.00 0.00 0.00 2.59
4372 5747 6.366332 CGTGGGATTACTGTAGCAAGATTATC 59.634 42.308 0.00 0.00 0.00 1.75
4373 5748 6.223852 CGTGGGATTACTGTAGCAAGATTAT 58.776 40.000 0.00 0.00 0.00 1.28
4374 5749 5.597806 CGTGGGATTACTGTAGCAAGATTA 58.402 41.667 0.00 0.00 0.00 1.75
4375 5750 4.442706 CGTGGGATTACTGTAGCAAGATT 58.557 43.478 0.00 0.00 0.00 2.40
4376 5751 3.741388 GCGTGGGATTACTGTAGCAAGAT 60.741 47.826 0.00 0.00 0.00 2.40
4377 5752 2.418197 GCGTGGGATTACTGTAGCAAGA 60.418 50.000 0.00 0.00 0.00 3.02
4378 5753 1.933853 GCGTGGGATTACTGTAGCAAG 59.066 52.381 0.00 0.00 0.00 4.01
4379 5754 1.553248 AGCGTGGGATTACTGTAGCAA 59.447 47.619 0.00 0.00 0.00 3.91
4380 5755 1.191535 AGCGTGGGATTACTGTAGCA 58.808 50.000 0.00 0.00 0.00 3.49
4381 5756 3.447918 TTAGCGTGGGATTACTGTAGC 57.552 47.619 0.00 0.00 0.00 3.58
4382 5757 5.196341 TGATTAGCGTGGGATTACTGTAG 57.804 43.478 0.00 0.00 0.00 2.74
4383 5758 5.538118 CATGATTAGCGTGGGATTACTGTA 58.462 41.667 0.00 0.00 0.00 2.74
4384 5759 4.380531 CATGATTAGCGTGGGATTACTGT 58.619 43.478 0.00 0.00 0.00 3.55
4385 5760 4.997905 CATGATTAGCGTGGGATTACTG 57.002 45.455 0.00 0.00 0.00 2.74
4394 5769 0.301687 GACGTGCCATGATTAGCGTG 59.698 55.000 0.00 0.00 32.56 5.34
4395 5770 0.108377 TGACGTGCCATGATTAGCGT 60.108 50.000 0.00 0.00 35.20 5.07
4396 5771 1.193203 GATGACGTGCCATGATTAGCG 59.807 52.381 0.00 0.00 0.00 4.26
4397 5772 1.532868 GGATGACGTGCCATGATTAGC 59.467 52.381 0.00 0.00 0.00 3.09
4398 5773 2.146342 GGGATGACGTGCCATGATTAG 58.854 52.381 0.00 0.00 38.41 1.73
4399 5774 1.540146 CGGGATGACGTGCCATGATTA 60.540 52.381 6.00 0.00 38.45 1.75
4400 5775 0.815213 CGGGATGACGTGCCATGATT 60.815 55.000 6.00 0.00 38.45 2.57
4401 5776 1.227645 CGGGATGACGTGCCATGAT 60.228 57.895 6.00 0.00 38.45 2.45
4402 5777 1.685355 ATCGGGATGACGTGCCATGA 61.685 55.000 6.00 0.00 38.45 3.07
4403 5778 0.815213 AATCGGGATGACGTGCCATG 60.815 55.000 6.00 0.00 38.45 3.66
4404 5779 0.756294 TAATCGGGATGACGTGCCAT 59.244 50.000 6.00 0.00 38.45 4.40
4405 5780 0.179094 GTAATCGGGATGACGTGCCA 60.179 55.000 6.00 0.00 38.45 4.92
4406 5781 0.104304 AGTAATCGGGATGACGTGCC 59.896 55.000 0.00 0.00 34.94 5.01
4407 5782 1.209128 CAGTAATCGGGATGACGTGC 58.791 55.000 0.00 0.00 34.94 5.34
4408 5783 2.579207 ACAGTAATCGGGATGACGTG 57.421 50.000 0.00 0.00 34.94 4.49
4409 5784 2.888594 CAACAGTAATCGGGATGACGT 58.111 47.619 0.00 0.00 34.94 4.34
4410 5785 1.593006 GCAACAGTAATCGGGATGACG 59.407 52.381 0.00 0.00 0.00 4.35
4411 5786 2.906354 AGCAACAGTAATCGGGATGAC 58.094 47.619 0.00 0.00 0.00 3.06
4412 5787 4.262463 GGATAGCAACAGTAATCGGGATGA 60.262 45.833 0.00 0.00 0.00 2.92
4413 5788 3.997021 GGATAGCAACAGTAATCGGGATG 59.003 47.826 0.00 0.00 0.00 3.51
4414 5789 3.904339 AGGATAGCAACAGTAATCGGGAT 59.096 43.478 0.00 0.00 0.00 3.85
4415 5790 3.305720 AGGATAGCAACAGTAATCGGGA 58.694 45.455 0.00 0.00 0.00 5.14
4416 5791 3.654414 GAGGATAGCAACAGTAATCGGG 58.346 50.000 0.00 0.00 0.00 5.14
4417 5792 3.004419 TCGAGGATAGCAACAGTAATCGG 59.996 47.826 0.00 0.00 0.00 4.18
4418 5793 4.224715 TCGAGGATAGCAACAGTAATCG 57.775 45.455 0.00 0.00 0.00 3.34
4419 5794 8.589335 TTATTTCGAGGATAGCAACAGTAATC 57.411 34.615 0.00 0.00 0.00 1.75
4420 5795 9.561069 AATTATTTCGAGGATAGCAACAGTAAT 57.439 29.630 0.00 0.00 0.00 1.89
4421 5796 8.958119 AATTATTTCGAGGATAGCAACAGTAA 57.042 30.769 0.00 0.00 0.00 2.24
4422 5797 8.589335 GAATTATTTCGAGGATAGCAACAGTA 57.411 34.615 0.00 0.00 0.00 2.74
4423 5798 7.484035 GAATTATTTCGAGGATAGCAACAGT 57.516 36.000 0.00 0.00 0.00 3.55
4444 5819 7.707774 ATTTTGAATTTGAACGGTTTCGAAT 57.292 28.000 0.00 0.00 44.66 3.34
4445 5820 7.275779 TGAATTTTGAATTTGAACGGTTTCGAA 59.724 29.630 0.00 0.00 39.11 3.71
4446 5821 6.752351 TGAATTTTGAATTTGAACGGTTTCGA 59.248 30.769 0.00 0.00 40.11 3.71
4447 5822 6.927746 TGAATTTTGAATTTGAACGGTTTCG 58.072 32.000 0.00 0.00 43.02 3.46
4448 5823 9.715123 ATTTGAATTTTGAATTTGAACGGTTTC 57.285 25.926 0.00 0.00 0.00 2.78
4450 5825 9.500864 CAATTTGAATTTTGAATTTGAACGGTT 57.499 25.926 0.00 0.00 0.00 4.44
4451 5826 8.887717 TCAATTTGAATTTTGAATTTGAACGGT 58.112 25.926 0.00 0.00 0.00 4.83
4452 5827 9.881529 ATCAATTTGAATTTTGAATTTGAACGG 57.118 25.926 2.68 0.00 35.63 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.