Multiple sequence alignment - TraesCS4B01G117700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G117700 chr4B 100.000 3044 0 0 1 3044 136531371 136534414 0.000000e+00 5622.0
1 TraesCS4B01G117700 chr4B 81.818 110 12 6 2499 2600 362845717 362845608 5.410000e-13 86.1
2 TraesCS4B01G117700 chr4B 82.292 96 10 4 2499 2587 142428583 142428678 3.250000e-10 76.8
3 TraesCS4B01G117700 chr4D 92.145 2126 85 35 1 2082 96522500 96524587 0.000000e+00 2926.0
4 TraesCS4B01G117700 chr4D 95.330 364 17 0 2588 2951 96525709 96526072 2.030000e-161 579.0
5 TraesCS4B01G117700 chr4D 94.675 169 7 2 2076 2243 437295759 437295926 8.370000e-66 261.0
6 TraesCS4B01G117700 chr4D 90.323 155 7 2 2376 2522 96524597 96524751 2.390000e-46 196.0
7 TraesCS4B01G117700 chr4D 92.481 133 8 2 2253 2384 344231838 344231969 4.010000e-44 189.0
8 TraesCS4B01G117700 chr4D 91.803 61 2 1 2499 2556 190480294 190480354 6.990000e-12 82.4
9 TraesCS4B01G117700 chr4D 89.062 64 4 1 2499 2559 386984718 386984781 3.250000e-10 76.8
10 TraesCS4B01G117700 chr4A 91.816 2126 104 26 1 2082 482134607 482132508 0.000000e+00 2898.0
11 TraesCS4B01G117700 chr4A 89.510 286 11 1 2666 2951 482132160 482131894 8.080000e-91 344.0
12 TraesCS4B01G117700 chr4A 87.086 302 19 10 2376 2661 482132501 482132204 1.050000e-84 324.0
13 TraesCS4B01G117700 chr4A 78.632 117 17 6 2499 2607 602648271 602648387 1.510000e-08 71.3
14 TraesCS4B01G117700 chr5B 75.427 761 107 52 1112 1835 231737041 231737758 2.290000e-76 296.0
15 TraesCS4B01G117700 chr5B 95.181 166 7 1 2081 2246 490757573 490757409 8.370000e-66 261.0
16 TraesCS4B01G117700 chr5A 75.584 770 93 60 1112 1835 284707263 284707983 2.970000e-75 292.0
17 TraesCS4B01G117700 chr5A 79.091 110 15 6 2499 2600 21421099 21421208 5.450000e-08 69.4
18 TraesCS4B01G117700 chr7D 94.675 169 8 1 2078 2246 296507680 296507847 8.370000e-66 261.0
19 TraesCS4B01G117700 chr7D 85.143 175 16 8 2242 2413 54967197 54967030 1.450000e-38 171.0
20 TraesCS4B01G117700 chr7D 79.091 110 15 5 2499 2600 70364178 70364069 5.450000e-08 69.4
21 TraesCS4B01G117700 chr7D 90.741 54 1 3 2366 2415 409808261 409808314 5.450000e-08 69.4
22 TraesCS4B01G117700 chr7D 88.679 53 2 3 2365 2413 492471451 492471503 9.110000e-06 62.1
23 TraesCS4B01G117700 chr6D 95.181 166 6 2 2079 2244 21051969 21052132 8.370000e-66 261.0
24 TraesCS4B01G117700 chr6D 83.333 96 10 3 2499 2588 331725573 331725668 1.940000e-12 84.2
25 TraesCS4B01G117700 chr6D 97.872 47 1 0 2499 2545 81811655 81811609 6.990000e-12 82.4
26 TraesCS4B01G117700 chr6D 88.406 69 5 1 2499 2564 57999695 57999763 2.520000e-11 80.5
27 TraesCS4B01G117700 chr6D 87.324 71 6 2 2499 2566 28413884 28413814 9.050000e-11 78.7
28 TraesCS4B01G117700 chr3B 95.706 163 6 1 2081 2243 112325298 112325137 8.370000e-66 261.0
29 TraesCS4B01G117700 chr3B 93.893 131 7 1 2255 2384 793003237 793003107 2.390000e-46 196.0
30 TraesCS4B01G117700 chr3B 100.000 32 0 0 2370 2401 789421386 789421417 3.280000e-05 60.2
31 TraesCS4B01G117700 chr7B 93.220 177 11 1 2075 2251 583373020 583372845 3.010000e-65 259.0
32 TraesCS4B01G117700 chr7B 92.593 135 8 1 2252 2384 578434412 578434546 3.100000e-45 193.0
33 TraesCS4B01G117700 chr7B 82.511 223 27 11 2166 2379 94759182 94758963 5.180000e-43 185.0
34 TraesCS4B01G117700 chr7B 80.909 110 13 5 2499 2600 713953461 713953570 2.520000e-11 80.5
35 TraesCS4B01G117700 chr2D 93.678 174 9 2 2071 2243 362930797 362930969 3.010000e-65 259.0
36 TraesCS4B01G117700 chr2D 92.481 133 8 2 2253 2384 89703313 89703182 4.010000e-44 189.0
37 TraesCS4B01G117700 chr7A 93.103 174 10 2 2071 2244 691723817 691723646 1.400000e-63 254.0
38 TraesCS4B01G117700 chr6B 91.758 182 12 3 2064 2245 696026244 696026422 1.810000e-62 250.0
39 TraesCS4B01G117700 chr6B 86.667 60 6 1 2359 2418 598545195 598545252 7.040000e-07 65.8
40 TraesCS4B01G117700 chr5D 74.413 766 110 53 1112 1834 215880587 215881309 1.810000e-62 250.0
41 TraesCS4B01G117700 chr5D 93.233 133 7 2 2253 2384 490854278 490854147 8.610000e-46 195.0
42 TraesCS4B01G117700 chr5D 92.481 133 8 2 2253 2384 10397059 10396928 4.010000e-44 189.0
43 TraesCS4B01G117700 chr5D 81.982 222 32 7 2080 2297 30959401 30959618 6.700000e-42 182.0
44 TraesCS4B01G117700 chr5D 78.182 110 16 6 2499 2600 484410017 484410126 2.530000e-06 63.9
45 TraesCS4B01G117700 chr3D 92.481 133 8 2 2253 2384 411511497 411511628 4.010000e-44 189.0
46 TraesCS4B01G117700 chr3D 91.935 62 4 1 2499 2559 138003521 138003582 5.410000e-13 86.1
47 TraesCS4B01G117700 chr3D 88.889 54 2 3 2364 2413 472881891 472881838 2.530000e-06 63.9
48 TraesCS4B01G117700 chr1B 80.392 204 33 7 2081 2281 496559809 496560008 6.800000e-32 148.0
49 TraesCS4B01G117700 chr1B 96.053 76 3 0 1396 1471 592650907 592650982 1.150000e-24 124.0
50 TraesCS4B01G117700 chr1B 89.855 69 6 1 2499 2566 68290361 68290293 1.500000e-13 87.9
51 TraesCS4B01G117700 chr1B 92.063 63 2 3 2499 2560 364350259 364350319 5.410000e-13 86.1
52 TraesCS4B01G117700 chr1B 80.909 110 13 5 2499 2600 24349102 24349211 2.520000e-11 80.5
53 TraesCS4B01G117700 chr1B 97.561 41 1 0 1396 1436 654526217 654526177 1.510000e-08 71.3
54 TraesCS4B01G117700 chr1A 80.982 163 24 7 2128 2287 264217365 264217523 4.120000e-24 122.0
55 TraesCS4B01G117700 chr1A 91.525 59 2 1 2499 2554 576284501 576284559 9.050000e-11 78.7
56 TraesCS4B01G117700 chr1D 83.000 100 11 3 2499 2592 418209 418308 5.410000e-13 86.1
57 TraesCS4B01G117700 chr1D 88.406 69 3 3 2500 2564 319531204 319531271 9.050000e-11 78.7
58 TraesCS4B01G117700 chr1D 87.324 71 6 1 2499 2566 423040687 423040617 9.050000e-11 78.7
59 TraesCS4B01G117700 chrUn 97.872 47 1 0 2499 2545 92777780 92777826 6.990000e-12 82.4
60 TraesCS4B01G117700 chrUn 82.474 97 10 4 2499 2588 96474095 96473999 9.050000e-11 78.7
61 TraesCS4B01G117700 chrUn 95.745 47 2 0 2499 2545 58704393 58704347 3.250000e-10 76.8
62 TraesCS4B01G117700 chrUn 95.745 47 2 0 2499 2545 83951805 83951851 3.250000e-10 76.8
63 TraesCS4B01G117700 chrUn 95.652 46 2 0 2499 2544 62343639 62343684 1.170000e-09 75.0
64 TraesCS4B01G117700 chrUn 95.652 46 2 0 2499 2544 62404980 62405025 1.170000e-09 75.0
65 TraesCS4B01G117700 chrUn 95.652 46 2 0 2499 2544 62460685 62460730 1.170000e-09 75.0
66 TraesCS4B01G117700 chrUn 95.652 46 2 0 2499 2544 62589104 62589149 1.170000e-09 75.0
67 TraesCS4B01G117700 chrUn 95.652 46 2 0 2499 2544 119331518 119331473 1.170000e-09 75.0
68 TraesCS4B01G117700 chrUn 89.831 59 3 1 2499 2554 113006217 113006275 4.210000e-09 73.1
69 TraesCS4B01G117700 chrUn 100.000 37 0 0 1397 1433 473127891 473127927 5.450000e-08 69.4
70 TraesCS4B01G117700 chrUn 100.000 37 0 0 1397 1433 475075511 475075547 5.450000e-08 69.4
71 TraesCS4B01G117700 chrUn 86.154 65 6 1 2499 2560 296641855 296641919 1.960000e-07 67.6
72 TraesCS4B01G117700 chrUn 82.353 85 8 4 2511 2588 319189038 319188954 1.960000e-07 67.6
73 TraesCS4B01G117700 chrUn 82.353 85 8 4 2511 2588 319797582 319797498 1.960000e-07 67.6
74 TraesCS4B01G117700 chrUn 100.000 34 0 0 1396 1429 473127812 473127845 2.530000e-06 63.9
75 TraesCS4B01G117700 chr6A 90.625 64 3 1 2499 2559 78517592 78517655 6.990000e-12 82.4
76 TraesCS4B01G117700 chr6A 90.625 64 3 1 2499 2559 301325045 301325108 6.990000e-12 82.4
77 TraesCS4B01G117700 chr6A 90.625 64 3 1 2499 2559 592873999 592873936 6.990000e-12 82.4
78 TraesCS4B01G117700 chr6A 87.324 71 5 3 2499 2566 8595103 8595172 9.050000e-11 78.7
79 TraesCS4B01G117700 chr2A 87.324 71 6 1 2499 2566 148184631 148184701 9.050000e-11 78.7
80 TraesCS4B01G117700 chr2A 86.957 69 6 1 2499 2564 764676736 764676804 1.170000e-09 75.0
81 TraesCS4B01G117700 chr2B 95.122 41 2 0 1396 1436 111369903 111369863 7.040000e-07 65.8
82 TraesCS4B01G117700 chr3A 88.679 53 2 3 2367 2415 514270942 514270890 9.110000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G117700 chr4B 136531371 136534414 3043 False 5622.000000 5622 100.000000 1 3044 1 chr4B.!!$F1 3043
1 TraesCS4B01G117700 chr4D 96522500 96526072 3572 False 1233.666667 2926 92.599333 1 2951 3 chr4D.!!$F5 2950
2 TraesCS4B01G117700 chr4A 482131894 482134607 2713 True 1188.666667 2898 89.470667 1 2951 3 chr4A.!!$R1 2950
3 TraesCS4B01G117700 chr5B 231737041 231737758 717 False 296.000000 296 75.427000 1112 1835 1 chr5B.!!$F1 723
4 TraesCS4B01G117700 chr5A 284707263 284707983 720 False 292.000000 292 75.584000 1112 1835 1 chr5A.!!$F2 723
5 TraesCS4B01G117700 chr5D 215880587 215881309 722 False 250.000000 250 74.413000 1112 1834 1 chr5D.!!$F2 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
364 368 0.161024 CTTCGTTCCTTGTCGTTCGC 59.839 55.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2356 2479 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.771590 TCATGTTGTTTTGAGGCTCATC 57.228 40.909 19.50 12.27 0.00 2.92
103 104 6.873605 GCTTATGAGTAAATTTGTGGCCTTTT 59.126 34.615 3.32 0.00 0.00 2.27
134 135 5.761003 TGTTGTACATGCATTTCTTCACTG 58.239 37.500 0.00 0.00 0.00 3.66
141 142 1.471684 GCATTTCTTCACTGCCTGGAG 59.528 52.381 0.00 0.00 0.00 3.86
142 143 2.787994 CATTTCTTCACTGCCTGGAGT 58.212 47.619 0.00 0.00 0.00 3.85
143 144 2.260844 TTTCTTCACTGCCTGGAGTG 57.739 50.000 12.05 12.05 44.14 3.51
194 195 6.536941 GTGTTATTCTCATCCTGACCTTTCTC 59.463 42.308 0.00 0.00 0.00 2.87
199 200 5.333581 TCTCATCCTGACCTTTCTCAAGTA 58.666 41.667 0.00 0.00 0.00 2.24
238 239 2.178876 CTGTATGCACGGTGTCCCCA 62.179 60.000 10.24 0.00 0.00 4.96
320 321 5.008613 TCTGTCCCGAGATTTTCACAAAAAG 59.991 40.000 0.00 0.00 37.76 2.27
364 368 0.161024 CTTCGTTCCTTGTCGTTCGC 59.839 55.000 0.00 0.00 0.00 4.70
429 433 6.329838 TGAAATTGCTGAAACAAAAACTCG 57.670 33.333 0.00 0.00 32.27 4.18
431 435 2.202295 TGCTGAAACAAAAACTCGCC 57.798 45.000 0.00 0.00 0.00 5.54
447 451 1.501741 GCCGCGAGAGAAATTGCAA 59.498 52.632 8.23 0.00 0.00 4.08
451 455 1.466192 CGCGAGAGAAATTGCAATGCA 60.466 47.619 13.82 2.72 36.47 3.96
454 458 4.353737 GCGAGAGAAATTGCAATGCATTA 58.646 39.130 13.82 0.00 38.76 1.90
457 461 6.436261 CGAGAGAAATTGCAATGCATTATCT 58.564 36.000 15.78 15.78 38.76 1.98
463 467 8.910944 AGAAATTGCAATGCATTATCTTCTACT 58.089 29.630 13.82 3.59 38.76 2.57
464 468 8.867112 AAATTGCAATGCATTATCTTCTACTG 57.133 30.769 13.82 0.00 38.76 2.74
465 469 7.578310 ATTGCAATGCATTATCTTCTACTGT 57.422 32.000 12.09 0.00 38.76 3.55
466 470 8.681486 ATTGCAATGCATTATCTTCTACTGTA 57.319 30.769 12.09 0.00 38.76 2.74
467 471 7.482654 TGCAATGCATTATCTTCTACTGTAC 57.517 36.000 12.53 0.00 31.71 2.90
645 650 2.458610 GCGAATTCGACCCGTTCCC 61.459 63.158 31.01 6.31 43.02 3.97
680 685 3.507233 GCTGGAATTCATTCACCAACAGA 59.493 43.478 7.93 0.00 38.53 3.41
684 689 6.690530 TGGAATTCATTCACCAACAGAAATC 58.309 36.000 7.93 0.00 38.53 2.17
784 789 0.835276 TGCATCAGCTCTACCTGCAT 59.165 50.000 0.00 0.00 42.74 3.96
794 799 4.596643 AGCTCTACCTGCATATTTCCATCT 59.403 41.667 0.00 0.00 0.00 2.90
796 801 5.486526 CTCTACCTGCATATTTCCATCTCC 58.513 45.833 0.00 0.00 0.00 3.71
859 864 3.389741 GCAAGATGCACGTTTCCAG 57.610 52.632 0.00 0.00 44.26 3.86
917 928 5.136828 TCCACTTGTGAAATGAAAAGCCTA 58.863 37.500 1.89 0.00 0.00 3.93
1094 1110 1.822506 TACGTCTGACTGACTGAGGG 58.177 55.000 6.21 0.00 43.25 4.30
1096 1112 1.594310 GTCTGACTGACTGAGGGGC 59.406 63.158 0.00 0.00 42.21 5.80
1495 1576 1.896694 CCTGAAGAAGAGCTCGGCT 59.103 57.895 8.37 6.82 43.88 5.52
1612 1700 1.550374 AGGGAGGGAGAGGGAGGAA 60.550 63.158 0.00 0.00 0.00 3.36
1869 1973 2.143594 GACGACGAGCTGGAGTTGGT 62.144 60.000 1.44 0.00 0.00 3.67
1899 2006 3.584406 AGATGACCGAGAAGACAACAG 57.416 47.619 0.00 0.00 0.00 3.16
2091 2214 8.773033 TTACTCTAAAAATATACTCCCTCCGT 57.227 34.615 0.00 0.00 0.00 4.69
2092 2215 7.672122 ACTCTAAAAATATACTCCCTCCGTT 57.328 36.000 0.00 0.00 0.00 4.44
2093 2216 7.724287 ACTCTAAAAATATACTCCCTCCGTTC 58.276 38.462 0.00 0.00 0.00 3.95
2094 2217 7.059202 TCTAAAAATATACTCCCTCCGTTCC 57.941 40.000 0.00 0.00 0.00 3.62
2095 2218 5.970501 AAAAATATACTCCCTCCGTTCCT 57.029 39.130 0.00 0.00 0.00 3.36
2096 2219 8.006564 TCTAAAAATATACTCCCTCCGTTCCTA 58.993 37.037 0.00 0.00 0.00 2.94
2097 2220 7.441903 AAAAATATACTCCCTCCGTTCCTAA 57.558 36.000 0.00 0.00 0.00 2.69
2098 2221 7.441903 AAAATATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
2099 2222 7.628501 AAATATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
2100 2223 8.731591 AAATATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
2101 2224 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2104 2227 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2105 2228 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2106 2229 6.614496 ACTCCCTCCGTTCCTAAATATAAGTT 59.386 38.462 0.00 0.00 0.00 2.66
2107 2230 7.126879 ACTCCCTCCGTTCCTAAATATAAGTTT 59.873 37.037 0.00 0.00 0.00 2.66
2108 2231 7.864770 TCCCTCCGTTCCTAAATATAAGTTTT 58.135 34.615 0.00 0.00 0.00 2.43
2109 2232 8.330993 TCCCTCCGTTCCTAAATATAAGTTTTT 58.669 33.333 0.00 0.00 0.00 1.94
2133 2256 9.483489 TTTTTAGAGATACCACTATGGACTACA 57.517 33.333 0.84 0.00 40.96 2.74
2134 2257 9.656323 TTTTAGAGATACCACTATGGACTACAT 57.344 33.333 0.84 0.00 40.96 2.29
2136 2259 9.736414 TTAGAGATACCACTATGGACTACATAC 57.264 37.037 0.84 0.00 40.96 2.39
2137 2260 6.879993 AGAGATACCACTATGGACTACATACG 59.120 42.308 0.84 0.00 40.96 3.06
2138 2261 5.944599 AGATACCACTATGGACTACATACGG 59.055 44.000 0.84 0.00 40.96 4.02
2139 2262 4.174704 ACCACTATGGACTACATACGGA 57.825 45.455 0.84 0.00 40.96 4.69
2140 2263 4.142790 ACCACTATGGACTACATACGGAG 58.857 47.826 0.84 0.00 40.96 4.63
2141 2264 3.057456 CCACTATGGACTACATACGGAGC 60.057 52.174 0.00 0.00 40.96 4.70
2142 2265 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
2143 2266 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
2144 2267 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
2145 2268 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
2146 2269 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
2147 2270 5.601583 TGGACTACATACGGAGCAAAATA 57.398 39.130 0.00 0.00 0.00 1.40
2148 2271 5.979993 TGGACTACATACGGAGCAAAATAA 58.020 37.500 0.00 0.00 0.00 1.40
2149 2272 6.408035 TGGACTACATACGGAGCAAAATAAA 58.592 36.000 0.00 0.00 0.00 1.40
2150 2273 7.051623 TGGACTACATACGGAGCAAAATAAAT 58.948 34.615 0.00 0.00 0.00 1.40
2151 2274 7.011950 TGGACTACATACGGAGCAAAATAAATG 59.988 37.037 0.00 0.00 0.00 2.32
2152 2275 7.225931 GGACTACATACGGAGCAAAATAAATGA 59.774 37.037 0.00 0.00 0.00 2.57
2153 2276 8.500753 ACTACATACGGAGCAAAATAAATGAA 57.499 30.769 0.00 0.00 0.00 2.57
2154 2277 9.120538 ACTACATACGGAGCAAAATAAATGAAT 57.879 29.630 0.00 0.00 0.00 2.57
2155 2278 9.599322 CTACATACGGAGCAAAATAAATGAATC 57.401 33.333 0.00 0.00 0.00 2.52
2156 2279 8.225603 ACATACGGAGCAAAATAAATGAATCT 57.774 30.769 0.00 0.00 0.00 2.40
2157 2280 9.337396 ACATACGGAGCAAAATAAATGAATCTA 57.663 29.630 0.00 0.00 0.00 1.98
2158 2281 9.599322 CATACGGAGCAAAATAAATGAATCTAC 57.401 33.333 0.00 0.00 0.00 2.59
2159 2282 7.624360 ACGGAGCAAAATAAATGAATCTACA 57.376 32.000 0.00 0.00 0.00 2.74
2160 2283 7.472543 ACGGAGCAAAATAAATGAATCTACAC 58.527 34.615 0.00 0.00 0.00 2.90
2161 2284 7.336931 ACGGAGCAAAATAAATGAATCTACACT 59.663 33.333 0.00 0.00 0.00 3.55
2162 2285 7.852945 CGGAGCAAAATAAATGAATCTACACTC 59.147 37.037 0.00 0.00 0.00 3.51
2163 2286 8.897752 GGAGCAAAATAAATGAATCTACACTCT 58.102 33.333 0.00 0.00 0.00 3.24
2202 2325 5.657474 ACATCCGTATGTAGTTTGTAGTGG 58.343 41.667 0.00 0.00 44.66 4.00
2203 2326 5.419788 ACATCCGTATGTAGTTTGTAGTGGA 59.580 40.000 0.00 0.00 44.66 4.02
2204 2327 5.981088 TCCGTATGTAGTTTGTAGTGGAA 57.019 39.130 0.00 0.00 0.00 3.53
2205 2328 6.534475 TCCGTATGTAGTTTGTAGTGGAAT 57.466 37.500 0.00 0.00 0.00 3.01
2206 2329 6.567050 TCCGTATGTAGTTTGTAGTGGAATC 58.433 40.000 0.00 0.00 0.00 2.52
2207 2330 6.379133 TCCGTATGTAGTTTGTAGTGGAATCT 59.621 38.462 0.00 0.00 0.00 2.40
2208 2331 6.696148 CCGTATGTAGTTTGTAGTGGAATCTC 59.304 42.308 0.00 0.00 0.00 2.75
2209 2332 7.416438 CCGTATGTAGTTTGTAGTGGAATCTCT 60.416 40.741 0.00 0.00 0.00 3.10
2210 2333 8.618677 CGTATGTAGTTTGTAGTGGAATCTCTA 58.381 37.037 0.00 0.00 0.00 2.43
2217 2340 9.847224 AGTTTGTAGTGGAATCTCTAAAAAGAA 57.153 29.630 3.22 0.00 30.99 2.52
2218 2341 9.880064 GTTTGTAGTGGAATCTCTAAAAAGAAC 57.120 33.333 3.22 0.00 30.99 3.01
2219 2342 9.847224 TTTGTAGTGGAATCTCTAAAAAGAACT 57.153 29.630 0.00 0.00 28.58 3.01
2220 2343 9.847224 TTGTAGTGGAATCTCTAAAAAGAACTT 57.153 29.630 0.00 0.00 0.00 2.66
2234 2357 9.821662 CTAAAAAGAACTTACATTTAGGAACGG 57.178 33.333 0.00 0.00 32.55 4.44
2235 2358 8.454570 AAAAAGAACTTACATTTAGGAACGGA 57.545 30.769 0.00 0.00 0.00 4.69
2236 2359 8.631480 AAAAGAACTTACATTTAGGAACGGAT 57.369 30.769 0.00 0.00 0.00 4.18
2237 2360 7.611213 AAGAACTTACATTTAGGAACGGATG 57.389 36.000 0.00 0.00 0.00 3.51
2238 2361 6.113411 AGAACTTACATTTAGGAACGGATGG 58.887 40.000 0.00 0.00 0.00 3.51
2239 2362 5.687166 ACTTACATTTAGGAACGGATGGA 57.313 39.130 0.00 0.00 0.00 3.41
2240 2363 5.671493 ACTTACATTTAGGAACGGATGGAG 58.329 41.667 0.00 0.00 0.00 3.86
2241 2364 5.189145 ACTTACATTTAGGAACGGATGGAGT 59.811 40.000 0.00 0.00 0.00 3.85
2242 2365 6.381994 ACTTACATTTAGGAACGGATGGAGTA 59.618 38.462 0.00 0.00 0.00 2.59
2243 2366 5.888982 ACATTTAGGAACGGATGGAGTAT 57.111 39.130 0.00 0.00 0.00 2.12
2244 2367 6.989155 ACATTTAGGAACGGATGGAGTATA 57.011 37.500 0.00 0.00 0.00 1.47
2245 2368 7.554959 ACATTTAGGAACGGATGGAGTATAT 57.445 36.000 0.00 0.00 0.00 0.86
2246 2369 7.612677 ACATTTAGGAACGGATGGAGTATATC 58.387 38.462 0.00 0.00 0.00 1.63
2247 2370 7.234782 ACATTTAGGAACGGATGGAGTATATCA 59.765 37.037 0.00 0.00 0.00 2.15
2248 2371 7.606135 TTTAGGAACGGATGGAGTATATCAA 57.394 36.000 0.00 0.00 0.00 2.57
2249 2372 7.606135 TTAGGAACGGATGGAGTATATCAAA 57.394 36.000 0.00 0.00 0.00 2.69
2250 2373 6.102897 AGGAACGGATGGAGTATATCAAAG 57.897 41.667 0.00 0.00 0.00 2.77
2251 2374 5.602978 AGGAACGGATGGAGTATATCAAAGT 59.397 40.000 0.00 0.00 0.00 2.66
2252 2375 6.781014 AGGAACGGATGGAGTATATCAAAGTA 59.219 38.462 0.00 0.00 0.00 2.24
2253 2376 7.039644 AGGAACGGATGGAGTATATCAAAGTAG 60.040 40.741 0.00 0.00 0.00 2.57
2254 2377 7.255871 GGAACGGATGGAGTATATCAAAGTAGT 60.256 40.741 0.00 0.00 0.00 2.73
2255 2378 8.701908 AACGGATGGAGTATATCAAAGTAGTA 57.298 34.615 0.00 0.00 0.00 1.82
2256 2379 8.108551 ACGGATGGAGTATATCAAAGTAGTAC 57.891 38.462 0.00 0.00 0.00 2.73
2257 2380 7.943447 ACGGATGGAGTATATCAAAGTAGTACT 59.057 37.037 0.00 0.00 0.00 2.73
2258 2381 8.452534 CGGATGGAGTATATCAAAGTAGTACTC 58.547 40.741 2.58 0.00 40.14 2.59
2264 2387 8.845413 AGTATATCAAAGTAGTACTCCCTACG 57.155 38.462 2.58 0.00 41.76 3.51
2265 2388 4.915158 ATCAAAGTAGTACTCCCTACGC 57.085 45.455 2.58 0.00 41.76 4.42
2266 2389 3.019564 TCAAAGTAGTACTCCCTACGCC 58.980 50.000 2.58 0.00 41.76 5.68
2267 2390 2.064434 AAGTAGTACTCCCTACGCCC 57.936 55.000 2.58 0.00 41.76 6.13
2268 2391 0.179034 AGTAGTACTCCCTACGCCCG 60.179 60.000 0.00 0.00 41.76 6.13
2269 2392 1.526917 TAGTACTCCCTACGCCCGC 60.527 63.158 0.00 0.00 0.00 6.13
2270 2393 2.269520 TAGTACTCCCTACGCCCGCA 62.270 60.000 0.00 0.00 0.00 5.69
2271 2394 2.362760 TACTCCCTACGCCCGCAA 60.363 61.111 0.00 0.00 0.00 4.85
2272 2395 1.983481 TACTCCCTACGCCCGCAAA 60.983 57.895 0.00 0.00 0.00 3.68
2273 2396 1.332144 TACTCCCTACGCCCGCAAAT 61.332 55.000 0.00 0.00 0.00 2.32
2274 2397 1.332144 ACTCCCTACGCCCGCAAATA 61.332 55.000 0.00 0.00 0.00 1.40
2275 2398 0.878961 CTCCCTACGCCCGCAAATAC 60.879 60.000 0.00 0.00 0.00 1.89
2276 2399 1.145377 CCCTACGCCCGCAAATACT 59.855 57.895 0.00 0.00 0.00 2.12
2277 2400 0.463116 CCCTACGCCCGCAAATACTT 60.463 55.000 0.00 0.00 0.00 2.24
2278 2401 0.655733 CCTACGCCCGCAAATACTTG 59.344 55.000 0.00 0.00 35.49 3.16
2279 2402 1.365699 CTACGCCCGCAAATACTTGT 58.634 50.000 0.00 0.00 34.79 3.16
2280 2403 1.326548 CTACGCCCGCAAATACTTGTC 59.673 52.381 0.00 0.00 34.79 3.18
2281 2404 0.604243 ACGCCCGCAAATACTTGTCA 60.604 50.000 0.00 0.00 34.79 3.58
2282 2405 0.732571 CGCCCGCAAATACTTGTCAT 59.267 50.000 0.00 0.00 34.79 3.06
2283 2406 1.268032 CGCCCGCAAATACTTGTCATC 60.268 52.381 0.00 0.00 34.79 2.92
2284 2407 1.742831 GCCCGCAAATACTTGTCATCA 59.257 47.619 0.00 0.00 34.79 3.07
2285 2408 2.163412 GCCCGCAAATACTTGTCATCAA 59.837 45.455 0.00 0.00 34.79 2.57
2286 2409 3.366883 GCCCGCAAATACTTGTCATCAAA 60.367 43.478 0.00 0.00 34.79 2.69
2287 2410 4.804108 CCCGCAAATACTTGTCATCAAAA 58.196 39.130 0.00 0.00 34.79 2.44
2288 2411 5.410067 CCCGCAAATACTTGTCATCAAAAT 58.590 37.500 0.00 0.00 34.79 1.82
2289 2412 5.289193 CCCGCAAATACTTGTCATCAAAATG 59.711 40.000 0.00 0.00 34.79 2.32
2290 2413 5.289193 CCGCAAATACTTGTCATCAAAATGG 59.711 40.000 0.00 0.00 34.79 3.16
2291 2414 6.092092 CGCAAATACTTGTCATCAAAATGGA 58.908 36.000 0.00 0.00 34.79 3.41
2292 2415 6.753279 CGCAAATACTTGTCATCAAAATGGAT 59.247 34.615 0.00 0.00 34.79 3.41
2293 2416 7.914871 CGCAAATACTTGTCATCAAAATGGATA 59.085 33.333 0.00 0.00 34.79 2.59
2294 2417 9.585099 GCAAATACTTGTCATCAAAATGGATAA 57.415 29.630 0.00 0.00 34.79 1.75
2335 2458 8.572855 ACTAATATACGTCTAAGTACATCCCC 57.427 38.462 0.00 0.00 0.00 4.81
2336 2459 8.389366 ACTAATATACGTCTAAGTACATCCCCT 58.611 37.037 0.00 0.00 0.00 4.79
2337 2460 9.240734 CTAATATACGTCTAAGTACATCCCCTT 57.759 37.037 0.00 0.00 0.00 3.95
2338 2461 7.700022 ATATACGTCTAAGTACATCCCCTTC 57.300 40.000 0.00 0.00 0.00 3.46
2339 2462 3.978610 ACGTCTAAGTACATCCCCTTCT 58.021 45.455 0.00 0.00 0.00 2.85
2340 2463 5.121380 ACGTCTAAGTACATCCCCTTCTA 57.879 43.478 0.00 0.00 0.00 2.10
2341 2464 5.703310 ACGTCTAAGTACATCCCCTTCTAT 58.297 41.667 0.00 0.00 0.00 1.98
2342 2465 6.134754 ACGTCTAAGTACATCCCCTTCTATT 58.865 40.000 0.00 0.00 0.00 1.73
2343 2466 6.264970 ACGTCTAAGTACATCCCCTTCTATTC 59.735 42.308 0.00 0.00 0.00 1.75
2344 2467 6.264744 CGTCTAAGTACATCCCCTTCTATTCA 59.735 42.308 0.00 0.00 0.00 2.57
2345 2468 7.039644 CGTCTAAGTACATCCCCTTCTATTCAT 60.040 40.741 0.00 0.00 0.00 2.57
2346 2469 8.652290 GTCTAAGTACATCCCCTTCTATTCATT 58.348 37.037 0.00 0.00 0.00 2.57
2347 2470 9.225682 TCTAAGTACATCCCCTTCTATTCATTT 57.774 33.333 0.00 0.00 0.00 2.32
2348 2471 9.853177 CTAAGTACATCCCCTTCTATTCATTTT 57.147 33.333 0.00 0.00 0.00 1.82
2349 2472 8.525290 AAGTACATCCCCTTCTATTCATTTTG 57.475 34.615 0.00 0.00 0.00 2.44
2350 2473 7.872138 AGTACATCCCCTTCTATTCATTTTGA 58.128 34.615 0.00 0.00 0.00 2.69
2351 2474 8.506083 AGTACATCCCCTTCTATTCATTTTGAT 58.494 33.333 0.00 0.00 0.00 2.57
2352 2475 7.592885 ACATCCCCTTCTATTCATTTTGATG 57.407 36.000 0.00 0.00 33.80 3.07
2353 2476 7.356680 ACATCCCCTTCTATTCATTTTGATGA 58.643 34.615 0.00 0.00 32.39 2.92
2354 2477 7.286316 ACATCCCCTTCTATTCATTTTGATGAC 59.714 37.037 0.00 0.00 32.39 3.06
2355 2478 6.730447 TCCCCTTCTATTCATTTTGATGACA 58.270 36.000 0.00 0.00 0.00 3.58
2356 2479 7.181361 TCCCCTTCTATTCATTTTGATGACAA 58.819 34.615 0.00 0.00 0.00 3.18
2357 2480 7.340232 TCCCCTTCTATTCATTTTGATGACAAG 59.660 37.037 0.00 0.00 37.32 3.16
2358 2481 7.123247 CCCCTTCTATTCATTTTGATGACAAGT 59.877 37.037 0.00 0.00 37.32 3.16
2359 2482 9.177608 CCCTTCTATTCATTTTGATGACAAGTA 57.822 33.333 0.00 0.00 37.32 2.24
2365 2488 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2366 2489 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2367 2490 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
2368 2491 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2369 2492 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2370 2493 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2371 2494 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2372 2495 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2373 2496 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2374 2497 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2526 2658 9.713740 CATAAGAAGCAAAATGAGTGAATCTAC 57.286 33.333 0.00 0.00 0.00 2.59
2530 2662 8.457261 AGAAGCAAAATGAGTGAATCTACATTC 58.543 33.333 0.00 0.00 39.24 2.67
2661 3717 6.513393 GCAAGCACATTGTTAACTAGTGAGTT 60.513 38.462 21.48 13.98 43.57 3.01
2672 3767 4.298103 ACTAGTGAGTTCGTAGAAGGGA 57.702 45.455 0.00 0.00 45.90 4.20
2702 3797 0.251742 TGGAATCCTTTGGGTGCAGG 60.252 55.000 0.00 0.00 0.00 4.85
2727 3822 4.590647 TGCCAAAATATCACTCAACCCAAA 59.409 37.500 0.00 0.00 0.00 3.28
2774 3869 4.701651 TCTCATATGCATCTTGCTCCTT 57.298 40.909 0.19 0.00 45.31 3.36
2921 4016 4.922719 ACTCTTTACGTAGATGCAGCTAC 58.077 43.478 28.16 28.16 37.87 3.58
2951 4046 0.693622 AGTCCAGGAGAGAGACGTCA 59.306 55.000 19.50 0.00 35.65 4.35
2952 4047 0.806241 GTCCAGGAGAGAGACGTCAC 59.194 60.000 19.50 12.15 0.00 3.67
2953 4048 0.693622 TCCAGGAGAGAGACGTCACT 59.306 55.000 19.50 17.56 0.00 3.41
2954 4049 1.907255 TCCAGGAGAGAGACGTCACTA 59.093 52.381 19.50 0.00 0.00 2.74
2955 4050 2.305052 TCCAGGAGAGAGACGTCACTAA 59.695 50.000 19.50 0.00 0.00 2.24
2956 4051 3.082548 CCAGGAGAGAGACGTCACTAAA 58.917 50.000 19.50 0.00 0.00 1.85
2957 4052 3.506455 CCAGGAGAGAGACGTCACTAAAA 59.494 47.826 19.50 0.00 0.00 1.52
2958 4053 4.380023 CCAGGAGAGAGACGTCACTAAAAG 60.380 50.000 19.50 6.64 0.00 2.27
2959 4054 3.759618 AGGAGAGAGACGTCACTAAAAGG 59.240 47.826 19.50 0.00 0.00 3.11
2960 4055 3.503891 GAGAGAGACGTCACTAAAAGGC 58.496 50.000 19.50 3.71 0.00 4.35
2961 4056 2.231721 AGAGAGACGTCACTAAAAGGCC 59.768 50.000 19.50 0.00 0.00 5.19
2962 4057 1.968493 AGAGACGTCACTAAAAGGCCA 59.032 47.619 19.50 0.00 0.00 5.36
2963 4058 2.067013 GAGACGTCACTAAAAGGCCAC 58.933 52.381 19.50 0.00 0.00 5.01
2964 4059 1.154197 GACGTCACTAAAAGGCCACC 58.846 55.000 11.55 0.00 0.00 4.61
2965 4060 0.601841 ACGTCACTAAAAGGCCACCG 60.602 55.000 5.01 0.00 0.00 4.94
2966 4061 1.873863 GTCACTAAAAGGCCACCGC 59.126 57.895 5.01 0.00 0.00 5.68
2967 4062 0.887387 GTCACTAAAAGGCCACCGCA 60.887 55.000 5.01 0.00 36.38 5.69
2968 4063 0.179015 TCACTAAAAGGCCACCGCAA 60.179 50.000 5.01 0.00 36.38 4.85
2969 4064 0.671251 CACTAAAAGGCCACCGCAAA 59.329 50.000 5.01 0.00 36.38 3.68
2970 4065 1.272212 CACTAAAAGGCCACCGCAAAT 59.728 47.619 5.01 0.00 36.38 2.32
2971 4066 2.490115 CACTAAAAGGCCACCGCAAATA 59.510 45.455 5.01 0.00 36.38 1.40
2972 4067 2.752903 ACTAAAAGGCCACCGCAAATAG 59.247 45.455 5.01 0.00 36.38 1.73
2973 4068 1.627864 AAAAGGCCACCGCAAATAGT 58.372 45.000 5.01 0.00 36.38 2.12
2974 4069 2.500392 AAAGGCCACCGCAAATAGTA 57.500 45.000 5.01 0.00 36.38 1.82
2975 4070 2.038387 AAGGCCACCGCAAATAGTAG 57.962 50.000 5.01 0.00 36.38 2.57
2976 4071 1.200519 AGGCCACCGCAAATAGTAGA 58.799 50.000 5.01 0.00 36.38 2.59
2977 4072 1.134491 AGGCCACCGCAAATAGTAGAC 60.134 52.381 5.01 0.00 36.38 2.59
2978 4073 0.928229 GCCACCGCAAATAGTAGACG 59.072 55.000 0.00 0.00 34.03 4.18
2981 4076 2.601562 CCGCAAATAGTAGACGGCC 58.398 57.895 0.00 0.00 37.05 6.13
2982 4077 1.213094 CCGCAAATAGTAGACGGCCG 61.213 60.000 26.86 26.86 37.05 6.13
2983 4078 0.526954 CGCAAATAGTAGACGGCCGT 60.527 55.000 34.89 34.89 0.00 5.68
2984 4079 1.648504 GCAAATAGTAGACGGCCGTT 58.351 50.000 34.65 23.40 0.00 4.44
2985 4080 2.004733 GCAAATAGTAGACGGCCGTTT 58.995 47.619 34.65 29.90 0.00 3.60
2986 4081 2.417586 GCAAATAGTAGACGGCCGTTTT 59.582 45.455 34.65 23.89 0.00 2.43
2987 4082 3.726782 GCAAATAGTAGACGGCCGTTTTG 60.727 47.826 31.89 31.89 0.00 2.44
2988 4083 3.323751 AATAGTAGACGGCCGTTTTGT 57.676 42.857 34.65 19.08 0.00 2.83
2989 4084 2.818130 TAGTAGACGGCCGTTTTGTT 57.182 45.000 34.65 19.01 0.00 2.83
2990 4085 2.818130 AGTAGACGGCCGTTTTGTTA 57.182 45.000 34.65 16.55 0.00 2.41
2991 4086 2.680577 AGTAGACGGCCGTTTTGTTAG 58.319 47.619 34.65 0.00 0.00 2.34
2992 4087 1.728425 GTAGACGGCCGTTTTGTTAGG 59.272 52.381 34.65 0.00 0.00 2.69
2993 4088 0.107268 AGACGGCCGTTTTGTTAGGT 59.893 50.000 34.65 4.34 0.00 3.08
2994 4089 1.344114 AGACGGCCGTTTTGTTAGGTA 59.656 47.619 34.65 0.00 0.00 3.08
2995 4090 2.142319 GACGGCCGTTTTGTTAGGTAA 58.858 47.619 34.65 0.00 0.00 2.85
2996 4091 2.743664 GACGGCCGTTTTGTTAGGTAAT 59.256 45.455 34.65 2.86 0.00 1.89
2997 4092 2.485038 ACGGCCGTTTTGTTAGGTAATG 59.515 45.455 28.70 0.00 0.00 1.90
2998 4093 2.159490 CGGCCGTTTTGTTAGGTAATGG 60.159 50.000 19.50 0.00 0.00 3.16
2999 4094 2.871133 GCCGTTTTGTTAGGTAATGGC 58.129 47.619 0.00 0.00 44.11 4.40
3000 4095 2.729778 GCCGTTTTGTTAGGTAATGGCG 60.730 50.000 0.00 0.00 42.23 5.69
3001 4096 2.743126 CCGTTTTGTTAGGTAATGGCGA 59.257 45.455 0.00 0.00 0.00 5.54
3002 4097 3.181514 CCGTTTTGTTAGGTAATGGCGAG 60.182 47.826 0.00 0.00 0.00 5.03
3003 4098 3.726782 CGTTTTGTTAGGTAATGGCGAGC 60.727 47.826 0.00 0.00 0.00 5.03
3004 4099 2.772077 TTGTTAGGTAATGGCGAGCA 57.228 45.000 0.00 0.00 0.00 4.26
3005 4100 2.772077 TGTTAGGTAATGGCGAGCAA 57.228 45.000 0.00 0.00 0.00 3.91
3006 4101 3.275617 TGTTAGGTAATGGCGAGCAAT 57.724 42.857 0.00 0.00 0.00 3.56
3007 4102 3.202906 TGTTAGGTAATGGCGAGCAATC 58.797 45.455 0.00 0.00 0.00 2.67
3008 4103 2.543777 TAGGTAATGGCGAGCAATCC 57.456 50.000 0.00 0.00 0.00 3.01
3009 4104 0.839946 AGGTAATGGCGAGCAATCCT 59.160 50.000 0.00 0.00 0.00 3.24
3010 4105 0.947244 GGTAATGGCGAGCAATCCTG 59.053 55.000 0.00 0.00 0.00 3.86
3011 4106 0.947244 GTAATGGCGAGCAATCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
3012 4107 0.819259 TAATGGCGAGCAATCCTGGC 60.819 55.000 0.00 0.00 43.73 4.85
3016 4111 3.570638 CGAGCAATCCTGGCGCAG 61.571 66.667 10.83 4.65 36.08 5.18
3029 4124 3.494378 CGCAGCAGATCCACCAAG 58.506 61.111 0.00 0.00 0.00 3.61
3030 4125 1.078918 CGCAGCAGATCCACCAAGA 60.079 57.895 0.00 0.00 0.00 3.02
3031 4126 1.088340 CGCAGCAGATCCACCAAGAG 61.088 60.000 0.00 0.00 0.00 2.85
3032 4127 1.375098 GCAGCAGATCCACCAAGAGC 61.375 60.000 0.00 0.00 0.00 4.09
3033 4128 0.747283 CAGCAGATCCACCAAGAGCC 60.747 60.000 0.00 0.00 0.00 4.70
3034 4129 0.913451 AGCAGATCCACCAAGAGCCT 60.913 55.000 0.00 0.00 0.00 4.58
3035 4130 0.463474 GCAGATCCACCAAGAGCCTC 60.463 60.000 0.00 0.00 0.00 4.70
3036 4131 0.907486 CAGATCCACCAAGAGCCTCA 59.093 55.000 0.00 0.00 0.00 3.86
3037 4132 1.489649 CAGATCCACCAAGAGCCTCAT 59.510 52.381 0.00 0.00 0.00 2.90
3038 4133 1.489649 AGATCCACCAAGAGCCTCATG 59.510 52.381 0.00 0.00 0.00 3.07
3039 4134 1.487976 GATCCACCAAGAGCCTCATGA 59.512 52.381 0.00 0.00 0.00 3.07
3040 4135 0.907486 TCCACCAAGAGCCTCATGAG 59.093 55.000 16.24 16.24 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 6.265196 AGAAATGCATGTACAACAAAGGAAGA 59.735 34.615 0.00 0.00 0.00 2.87
134 135 0.402121 AGAAACTTCCCACTCCAGGC 59.598 55.000 0.00 0.00 0.00 4.85
141 142 1.509703 GACGTCCAGAAACTTCCCAC 58.490 55.000 3.51 0.00 0.00 4.61
142 143 0.395312 GGACGTCCAGAAACTTCCCA 59.605 55.000 29.75 0.00 32.77 4.37
143 144 0.685660 AGGACGTCCAGAAACTTCCC 59.314 55.000 35.00 5.32 38.11 3.97
194 195 4.021102 ACCATGGTTGAGACCTTACTTG 57.979 45.455 13.00 0.00 46.66 3.16
199 200 2.578021 AGCATACCATGGTTGAGACCTT 59.422 45.455 25.38 0.00 46.66 3.50
238 239 6.368243 CAGAATAAAGCTATCTGATGCGATGT 59.632 38.462 11.32 0.00 0.00 3.06
320 321 9.727859 AGGAGAAAAGGTTAGAATAACTTCTTC 57.272 33.333 0.18 1.51 41.91 2.87
364 368 2.698855 AGAGTTGATGGTGGATTCGG 57.301 50.000 0.00 0.00 0.00 4.30
429 433 0.099436 ATTGCAATTTCTCTCGCGGC 59.901 50.000 5.99 0.00 0.00 6.53
431 435 1.186030 GCATTGCAATTTCTCTCGCG 58.814 50.000 9.83 0.00 0.00 5.87
439 443 8.472413 ACAGTAGAAGATAATGCATTGCAATTT 58.528 29.630 22.27 9.01 43.62 1.82
447 451 7.453126 AGCTAGGTACAGTAGAAGATAATGCAT 59.547 37.037 0.00 0.00 0.00 3.96
451 455 9.649316 AGAAAGCTAGGTACAGTAGAAGATAAT 57.351 33.333 0.00 0.00 0.00 1.28
454 458 6.183360 GCAGAAAGCTAGGTACAGTAGAAGAT 60.183 42.308 0.00 0.00 41.15 2.40
457 461 4.159879 GGCAGAAAGCTAGGTACAGTAGAA 59.840 45.833 0.00 0.00 44.79 2.10
463 467 2.257207 ACAGGCAGAAAGCTAGGTACA 58.743 47.619 0.00 0.00 44.79 2.90
464 468 3.263261 GAACAGGCAGAAAGCTAGGTAC 58.737 50.000 0.00 0.00 44.79 3.34
465 469 2.903784 TGAACAGGCAGAAAGCTAGGTA 59.096 45.455 0.00 0.00 44.79 3.08
466 470 1.699634 TGAACAGGCAGAAAGCTAGGT 59.300 47.619 0.00 0.00 44.79 3.08
467 471 2.354259 CTGAACAGGCAGAAAGCTAGG 58.646 52.381 0.00 0.00 44.79 3.02
660 665 6.295236 GGATTTCTGTTGGTGAATGAATTCCA 60.295 38.462 2.27 0.00 37.25 3.53
680 685 6.096846 CCGAATTTCTGATAAGGTTGGGATTT 59.903 38.462 0.00 0.00 0.00 2.17
684 689 4.096382 CACCGAATTTCTGATAAGGTTGGG 59.904 45.833 0.00 0.00 0.00 4.12
718 723 4.925054 CGCACAAATTTGATGGTGATCTTT 59.075 37.500 24.64 0.00 33.16 2.52
770 775 4.077300 TGGAAATATGCAGGTAGAGCTG 57.923 45.455 4.34 4.34 0.00 4.24
784 789 5.044919 ACAACATGTCAGGGAGATGGAAATA 60.045 40.000 0.00 0.00 37.59 1.40
794 799 0.250858 CCTGCACAACATGTCAGGGA 60.251 55.000 19.10 4.48 39.65 4.20
796 801 1.582968 GCCTGCACAACATGTCAGG 59.417 57.895 21.46 21.46 42.87 3.86
852 857 2.623416 CAACTTGGGAGGAACTGGAAAC 59.377 50.000 0.00 0.00 41.55 2.78
859 864 2.427506 CTACTGCAACTTGGGAGGAAC 58.572 52.381 0.00 0.00 0.00 3.62
943 954 0.104120 TATGTGGCTGTCGAATCGGG 59.896 55.000 1.76 0.00 0.00 5.14
1094 1110 2.180017 CATCCAACAAGCAGCGCC 59.820 61.111 2.29 0.00 0.00 6.53
1096 1112 2.703798 CCCCATCCAACAAGCAGCG 61.704 63.158 0.00 0.00 0.00 5.18
1495 1576 3.653009 GTGCACAGCAGCAGCGAA 61.653 61.111 13.17 0.00 46.69 4.70
1594 1682 1.550374 TTCCTCCCTCTCCCTCCCT 60.550 63.158 0.00 0.00 0.00 4.20
1848 1949 2.259439 AACTCCAGCTCGTCGTCGT 61.259 57.895 1.33 0.00 38.33 4.34
1855 1956 0.460987 GATCCACCAACTCCAGCTCG 60.461 60.000 0.00 0.00 0.00 5.03
1869 1973 3.365472 TCTCGGTCATCTTCTTGATCCA 58.635 45.455 0.00 0.00 32.05 3.41
1899 2006 2.202932 AGGCGTCGATGCATGTCC 60.203 61.111 29.46 12.81 36.28 4.02
2082 2205 6.667558 ACTTATATTTAGGAACGGAGGGAG 57.332 41.667 0.00 0.00 0.00 4.30
2083 2206 7.441903 AAACTTATATTTAGGAACGGAGGGA 57.558 36.000 0.00 0.00 0.00 4.20
2084 2207 8.515695 AAAAACTTATATTTAGGAACGGAGGG 57.484 34.615 0.00 0.00 0.00 4.30
2107 2230 9.483489 TGTAGTCCATAGTGGTATCTCTAAAAA 57.517 33.333 0.00 0.00 39.03 1.94
2108 2231 9.656323 ATGTAGTCCATAGTGGTATCTCTAAAA 57.344 33.333 0.00 0.00 39.03 1.52
2110 2233 9.736414 GTATGTAGTCCATAGTGGTATCTCTAA 57.264 37.037 0.00 0.00 39.03 2.10
2111 2234 8.039538 CGTATGTAGTCCATAGTGGTATCTCTA 58.960 40.741 0.00 0.00 39.03 2.43
2112 2235 6.879993 CGTATGTAGTCCATAGTGGTATCTCT 59.120 42.308 0.00 0.00 39.03 3.10
2113 2236 6.093771 CCGTATGTAGTCCATAGTGGTATCTC 59.906 46.154 0.00 0.00 39.03 2.75
2114 2237 5.944599 CCGTATGTAGTCCATAGTGGTATCT 59.055 44.000 0.00 0.00 39.03 1.98
2115 2238 5.942236 TCCGTATGTAGTCCATAGTGGTATC 59.058 44.000 0.00 0.00 39.03 2.24
2116 2239 5.884322 TCCGTATGTAGTCCATAGTGGTAT 58.116 41.667 0.00 0.00 39.03 2.73
2117 2240 5.308976 TCCGTATGTAGTCCATAGTGGTA 57.691 43.478 0.00 0.00 39.03 3.25
2118 2241 4.142790 CTCCGTATGTAGTCCATAGTGGT 58.857 47.826 0.00 0.00 39.03 4.16
2119 2242 3.057456 GCTCCGTATGTAGTCCATAGTGG 60.057 52.174 0.00 0.00 36.71 4.00
2120 2243 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
2121 2244 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
2122 2245 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
2123 2246 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
2124 2247 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
2125 2248 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2126 2249 6.913873 TTTATTTTGCTCCGTATGTAGTCC 57.086 37.500 0.00 0.00 0.00 3.85
2127 2250 8.138365 TCATTTATTTTGCTCCGTATGTAGTC 57.862 34.615 0.00 0.00 0.00 2.59
2128 2251 8.500753 TTCATTTATTTTGCTCCGTATGTAGT 57.499 30.769 0.00 0.00 0.00 2.73
2129 2252 9.599322 GATTCATTTATTTTGCTCCGTATGTAG 57.401 33.333 0.00 0.00 0.00 2.74
2130 2253 9.337396 AGATTCATTTATTTTGCTCCGTATGTA 57.663 29.630 0.00 0.00 0.00 2.29
2131 2254 8.225603 AGATTCATTTATTTTGCTCCGTATGT 57.774 30.769 0.00 0.00 0.00 2.29
2132 2255 9.599322 GTAGATTCATTTATTTTGCTCCGTATG 57.401 33.333 0.00 0.00 0.00 2.39
2133 2256 9.337396 TGTAGATTCATTTATTTTGCTCCGTAT 57.663 29.630 0.00 0.00 0.00 3.06
2134 2257 8.609176 GTGTAGATTCATTTATTTTGCTCCGTA 58.391 33.333 0.00 0.00 0.00 4.02
2135 2258 7.336931 AGTGTAGATTCATTTATTTTGCTCCGT 59.663 33.333 0.00 0.00 0.00 4.69
2136 2259 7.697691 AGTGTAGATTCATTTATTTTGCTCCG 58.302 34.615 0.00 0.00 0.00 4.63
2137 2260 8.897752 AGAGTGTAGATTCATTTATTTTGCTCC 58.102 33.333 0.00 0.00 0.00 4.70
2176 2299 8.570488 CCACTACAAACTACATACGGATGTATA 58.430 37.037 20.64 9.08 45.42 1.47
2177 2300 7.286087 TCCACTACAAACTACATACGGATGTAT 59.714 37.037 20.64 8.38 45.42 2.29
2178 2301 6.602803 TCCACTACAAACTACATACGGATGTA 59.397 38.462 19.32 19.32 44.77 2.29
2180 2303 5.898174 TCCACTACAAACTACATACGGATG 58.102 41.667 5.94 5.94 39.16 3.51
2181 2304 6.534475 TTCCACTACAAACTACATACGGAT 57.466 37.500 0.00 0.00 0.00 4.18
2182 2305 5.981088 TTCCACTACAAACTACATACGGA 57.019 39.130 0.00 0.00 0.00 4.69
2183 2306 6.570692 AGATTCCACTACAAACTACATACGG 58.429 40.000 0.00 0.00 0.00 4.02
2184 2307 7.481642 AGAGATTCCACTACAAACTACATACG 58.518 38.462 0.00 0.00 0.00 3.06
2191 2314 9.847224 TTCTTTTTAGAGATTCCACTACAAACT 57.153 29.630 0.00 0.00 0.00 2.66
2192 2315 9.880064 GTTCTTTTTAGAGATTCCACTACAAAC 57.120 33.333 0.00 0.00 0.00 2.93
2193 2316 9.847224 AGTTCTTTTTAGAGATTCCACTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
2194 2317 9.847224 AAGTTCTTTTTAGAGATTCCACTACAA 57.153 29.630 0.00 0.00 0.00 2.41
2208 2331 9.821662 CCGTTCCTAAATGTAAGTTCTTTTTAG 57.178 33.333 7.62 7.62 0.00 1.85
2209 2332 9.558396 TCCGTTCCTAAATGTAAGTTCTTTTTA 57.442 29.630 0.00 0.00 0.00 1.52
2210 2333 8.454570 TCCGTTCCTAAATGTAAGTTCTTTTT 57.545 30.769 0.00 0.00 0.00 1.94
2211 2334 8.512138 CATCCGTTCCTAAATGTAAGTTCTTTT 58.488 33.333 0.00 0.00 0.00 2.27
2212 2335 7.120726 CCATCCGTTCCTAAATGTAAGTTCTTT 59.879 37.037 0.00 0.00 0.00 2.52
2213 2336 6.598064 CCATCCGTTCCTAAATGTAAGTTCTT 59.402 38.462 0.00 0.00 0.00 2.52
2214 2337 6.070424 TCCATCCGTTCCTAAATGTAAGTTCT 60.070 38.462 0.00 0.00 0.00 3.01
2215 2338 6.110707 TCCATCCGTTCCTAAATGTAAGTTC 58.889 40.000 0.00 0.00 0.00 3.01
2216 2339 6.057321 TCCATCCGTTCCTAAATGTAAGTT 57.943 37.500 0.00 0.00 0.00 2.66
2217 2340 5.189145 ACTCCATCCGTTCCTAAATGTAAGT 59.811 40.000 0.00 0.00 0.00 2.24
2218 2341 5.671493 ACTCCATCCGTTCCTAAATGTAAG 58.329 41.667 0.00 0.00 0.00 2.34
2219 2342 5.687166 ACTCCATCCGTTCCTAAATGTAA 57.313 39.130 0.00 0.00 0.00 2.41
2220 2343 6.989155 ATACTCCATCCGTTCCTAAATGTA 57.011 37.500 0.00 0.00 0.00 2.29
2221 2344 5.888982 ATACTCCATCCGTTCCTAAATGT 57.111 39.130 0.00 0.00 0.00 2.71
2222 2345 7.611770 TGATATACTCCATCCGTTCCTAAATG 58.388 38.462 0.00 0.00 0.00 2.32
2223 2346 7.792364 TGATATACTCCATCCGTTCCTAAAT 57.208 36.000 0.00 0.00 0.00 1.40
2224 2347 7.606135 TTGATATACTCCATCCGTTCCTAAA 57.394 36.000 0.00 0.00 0.00 1.85
2225 2348 7.289317 ACTTTGATATACTCCATCCGTTCCTAA 59.711 37.037 0.00 0.00 0.00 2.69
2226 2349 6.781014 ACTTTGATATACTCCATCCGTTCCTA 59.219 38.462 0.00 0.00 0.00 2.94
2227 2350 5.602978 ACTTTGATATACTCCATCCGTTCCT 59.397 40.000 0.00 0.00 0.00 3.36
2228 2351 5.855045 ACTTTGATATACTCCATCCGTTCC 58.145 41.667 0.00 0.00 0.00 3.62
2229 2352 7.659186 ACTACTTTGATATACTCCATCCGTTC 58.341 38.462 0.00 0.00 0.00 3.95
2230 2353 7.598759 ACTACTTTGATATACTCCATCCGTT 57.401 36.000 0.00 0.00 0.00 4.44
2231 2354 7.943447 AGTACTACTTTGATATACTCCATCCGT 59.057 37.037 0.00 0.00 0.00 4.69
2232 2355 8.338072 AGTACTACTTTGATATACTCCATCCG 57.662 38.462 0.00 0.00 0.00 4.18
2238 2361 8.934825 CGTAGGGAGTACTACTTTGATATACTC 58.065 40.741 4.77 0.00 40.87 2.59
2239 2362 7.390162 GCGTAGGGAGTACTACTTTGATATACT 59.610 40.741 4.77 0.00 40.87 2.12
2240 2363 7.361628 GGCGTAGGGAGTACTACTTTGATATAC 60.362 44.444 4.77 0.00 40.87 1.47
2241 2364 6.656693 GGCGTAGGGAGTACTACTTTGATATA 59.343 42.308 4.77 0.00 40.87 0.86
2242 2365 5.476254 GGCGTAGGGAGTACTACTTTGATAT 59.524 44.000 4.77 0.00 40.87 1.63
2243 2366 4.823989 GGCGTAGGGAGTACTACTTTGATA 59.176 45.833 4.77 0.00 40.87 2.15
2244 2367 3.635836 GGCGTAGGGAGTACTACTTTGAT 59.364 47.826 4.77 0.00 40.87 2.57
2245 2368 3.019564 GGCGTAGGGAGTACTACTTTGA 58.980 50.000 4.77 0.00 40.87 2.69
2246 2369 2.100418 GGGCGTAGGGAGTACTACTTTG 59.900 54.545 4.77 0.00 40.87 2.77
2247 2370 2.382882 GGGCGTAGGGAGTACTACTTT 58.617 52.381 4.77 0.00 40.87 2.66
2248 2371 1.748591 CGGGCGTAGGGAGTACTACTT 60.749 57.143 4.77 0.00 40.87 2.24
2249 2372 0.179034 CGGGCGTAGGGAGTACTACT 60.179 60.000 4.77 4.95 40.87 2.57
2250 2373 1.790090 GCGGGCGTAGGGAGTACTAC 61.790 65.000 0.00 0.00 39.90 2.73
2251 2374 1.526917 GCGGGCGTAGGGAGTACTA 60.527 63.158 0.00 0.00 0.00 1.82
2252 2375 2.832201 GCGGGCGTAGGGAGTACT 60.832 66.667 0.00 0.00 0.00 2.73
2253 2376 2.229690 TTTGCGGGCGTAGGGAGTAC 62.230 60.000 0.00 0.00 0.00 2.73
2254 2377 1.332144 ATTTGCGGGCGTAGGGAGTA 61.332 55.000 0.00 0.00 0.00 2.59
2255 2378 1.332144 TATTTGCGGGCGTAGGGAGT 61.332 55.000 0.00 0.00 0.00 3.85
2256 2379 0.878961 GTATTTGCGGGCGTAGGGAG 60.879 60.000 0.00 0.00 0.00 4.30
2257 2380 1.144496 GTATTTGCGGGCGTAGGGA 59.856 57.895 0.00 0.00 0.00 4.20
2258 2381 0.463116 AAGTATTTGCGGGCGTAGGG 60.463 55.000 0.00 0.00 0.00 3.53
2259 2382 0.655733 CAAGTATTTGCGGGCGTAGG 59.344 55.000 0.00 0.00 0.00 3.18
2260 2383 1.326548 GACAAGTATTTGCGGGCGTAG 59.673 52.381 0.00 0.00 37.85 3.51
2261 2384 1.337917 TGACAAGTATTTGCGGGCGTA 60.338 47.619 0.00 0.00 37.85 4.42
2262 2385 0.604243 TGACAAGTATTTGCGGGCGT 60.604 50.000 0.00 0.00 37.85 5.68
2263 2386 0.732571 ATGACAAGTATTTGCGGGCG 59.267 50.000 0.00 0.00 37.85 6.13
2264 2387 1.742831 TGATGACAAGTATTTGCGGGC 59.257 47.619 0.00 0.00 37.85 6.13
2265 2388 4.433186 TTTGATGACAAGTATTTGCGGG 57.567 40.909 0.00 0.00 37.85 6.13
2266 2389 5.289193 CCATTTTGATGACAAGTATTTGCGG 59.711 40.000 0.00 0.00 37.85 5.69
2267 2390 6.092092 TCCATTTTGATGACAAGTATTTGCG 58.908 36.000 0.00 0.00 37.85 4.85
2268 2391 9.585099 TTATCCATTTTGATGACAAGTATTTGC 57.415 29.630 0.00 0.00 37.85 3.68
2309 2432 9.018582 GGGGATGTACTTAGACGTATATTAGTT 57.981 37.037 0.28 0.00 0.00 2.24
2310 2433 8.389366 AGGGGATGTACTTAGACGTATATTAGT 58.611 37.037 0.00 0.00 0.00 2.24
2311 2434 8.804912 AGGGGATGTACTTAGACGTATATTAG 57.195 38.462 0.00 0.00 0.00 1.73
2312 2435 9.236006 GAAGGGGATGTACTTAGACGTATATTA 57.764 37.037 0.00 0.00 0.00 0.98
2313 2436 7.949006 AGAAGGGGATGTACTTAGACGTATATT 59.051 37.037 0.00 0.00 0.00 1.28
2314 2437 7.468496 AGAAGGGGATGTACTTAGACGTATAT 58.532 38.462 0.00 0.00 0.00 0.86
2315 2438 6.845908 AGAAGGGGATGTACTTAGACGTATA 58.154 40.000 0.00 0.00 0.00 1.47
2316 2439 5.703310 AGAAGGGGATGTACTTAGACGTAT 58.297 41.667 0.00 0.00 0.00 3.06
2317 2440 5.121380 AGAAGGGGATGTACTTAGACGTA 57.879 43.478 0.00 0.00 0.00 3.57
2318 2441 3.978610 AGAAGGGGATGTACTTAGACGT 58.021 45.455 0.00 0.00 0.00 4.34
2319 2442 6.264744 TGAATAGAAGGGGATGTACTTAGACG 59.735 42.308 0.00 0.00 0.00 4.18
2320 2443 7.598759 TGAATAGAAGGGGATGTACTTAGAC 57.401 40.000 0.00 0.00 0.00 2.59
2321 2444 8.798975 AATGAATAGAAGGGGATGTACTTAGA 57.201 34.615 0.00 0.00 0.00 2.10
2322 2445 9.853177 AAAATGAATAGAAGGGGATGTACTTAG 57.147 33.333 0.00 0.00 0.00 2.18
2323 2446 9.627123 CAAAATGAATAGAAGGGGATGTACTTA 57.373 33.333 0.00 0.00 0.00 2.24
2324 2447 8.336235 TCAAAATGAATAGAAGGGGATGTACTT 58.664 33.333 0.00 0.00 0.00 2.24
2325 2448 7.872138 TCAAAATGAATAGAAGGGGATGTACT 58.128 34.615 0.00 0.00 0.00 2.73
2326 2449 8.571336 CATCAAAATGAATAGAAGGGGATGTAC 58.429 37.037 0.00 0.00 34.61 2.90
2327 2450 8.501904 TCATCAAAATGAATAGAAGGGGATGTA 58.498 33.333 0.00 0.00 38.97 2.29
2328 2451 7.286316 GTCATCAAAATGAATAGAAGGGGATGT 59.714 37.037 0.00 0.00 43.42 3.06
2329 2452 7.286087 TGTCATCAAAATGAATAGAAGGGGATG 59.714 37.037 0.00 0.00 43.42 3.51
2330 2453 7.356680 TGTCATCAAAATGAATAGAAGGGGAT 58.643 34.615 0.00 0.00 43.42 3.85
2331 2454 6.730447 TGTCATCAAAATGAATAGAAGGGGA 58.270 36.000 0.00 0.00 43.42 4.81
2332 2455 7.123247 ACTTGTCATCAAAATGAATAGAAGGGG 59.877 37.037 0.00 0.00 43.42 4.79
2333 2456 8.059798 ACTTGTCATCAAAATGAATAGAAGGG 57.940 34.615 0.00 0.00 43.42 3.95
2340 2463 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2341 2464 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
2342 2465 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2343 2466 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2344 2467 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2345 2468 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2346 2469 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2347 2470 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2348 2471 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2349 2472 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2350 2473 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2351 2474 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2352 2475 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2353 2476 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2354 2477 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2355 2478 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2356 2479 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2357 2480 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2358 2481 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2359 2482 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2360 2483 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2361 2484 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2362 2485 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
2363 2486 0.179009 TATGTACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
2364 2487 0.950116 GTATGTACTCCCTCCGTCCG 59.050 60.000 0.00 0.00 0.00 4.79
2365 2488 0.950116 CGTATGTACTCCCTCCGTCC 59.050 60.000 0.00 0.00 0.00 4.79
2366 2489 1.959042 TCGTATGTACTCCCTCCGTC 58.041 55.000 0.00 0.00 0.00 4.79
2367 2490 2.295885 CTTCGTATGTACTCCCTCCGT 58.704 52.381 0.00 0.00 0.00 4.69
2368 2491 1.001597 GCTTCGTATGTACTCCCTCCG 60.002 57.143 0.00 0.00 0.00 4.63
2369 2492 2.029623 TGCTTCGTATGTACTCCCTCC 58.970 52.381 0.00 0.00 0.00 4.30
2370 2493 3.795623 TTGCTTCGTATGTACTCCCTC 57.204 47.619 0.00 0.00 0.00 4.30
2371 2494 4.546829 TTTTGCTTCGTATGTACTCCCT 57.453 40.909 0.00 0.00 0.00 4.20
2372 2495 6.482308 ACATATTTTGCTTCGTATGTACTCCC 59.518 38.462 0.00 0.00 36.35 4.30
2373 2496 7.438459 AGACATATTTTGCTTCGTATGTACTCC 59.562 37.037 0.00 0.00 37.76 3.85
2374 2497 8.354011 AGACATATTTTGCTTCGTATGTACTC 57.646 34.615 0.00 0.00 37.76 2.59
2495 2618 9.844790 TTCACTCATTTTGCTTCTTATGTATTG 57.155 29.630 0.00 0.00 0.00 1.90
2504 2635 7.934855 ATGTAGATTCACTCATTTTGCTTCT 57.065 32.000 0.00 0.00 0.00 2.85
2596 3652 7.667557 AGTTCAATTTAGTACAGTACTGCTCA 58.332 34.615 22.90 5.56 39.81 4.26
2661 3717 0.606604 GCCAAGTGTCCCTTCTACGA 59.393 55.000 0.00 0.00 0.00 3.43
2672 3767 0.620556 AGGATTCCATCGCCAAGTGT 59.379 50.000 5.29 0.00 0.00 3.55
2702 3797 4.402155 TGGGTTGAGTGATATTTTGGCATC 59.598 41.667 0.00 0.00 0.00 3.91
2717 3812 1.082104 GCGTTCGCTTTGGGTTGAG 60.082 57.895 9.99 0.00 0.00 3.02
2727 3822 2.400896 AAAATTGCACCGCGTTCGCT 62.401 50.000 14.92 0.00 0.00 4.93
2774 3869 2.848071 AGGAACTAATAAAAGGCCGGGA 59.152 45.455 2.18 0.00 36.02 5.14
2894 3989 2.728922 CATCTACGTAAAGAGTCGGCC 58.271 52.381 0.00 0.00 0.00 6.13
2936 4031 4.380023 CCTTTTAGTGACGTCTCTCTCCTG 60.380 50.000 22.41 10.77 0.00 3.86
2951 4046 1.627864 ATTTGCGGTGGCCTTTTAGT 58.372 45.000 3.32 0.00 38.85 2.24
2952 4047 2.752903 ACTATTTGCGGTGGCCTTTTAG 59.247 45.455 3.32 0.00 38.85 1.85
2953 4048 2.797786 ACTATTTGCGGTGGCCTTTTA 58.202 42.857 3.32 0.00 38.85 1.52
2954 4049 1.627864 ACTATTTGCGGTGGCCTTTT 58.372 45.000 3.32 0.00 38.85 2.27
2955 4050 2.026636 TCTACTATTTGCGGTGGCCTTT 60.027 45.455 3.32 0.00 38.85 3.11
2956 4051 1.557832 TCTACTATTTGCGGTGGCCTT 59.442 47.619 3.32 0.00 38.85 4.35
2957 4052 1.134491 GTCTACTATTTGCGGTGGCCT 60.134 52.381 3.32 0.00 38.85 5.19
2958 4053 1.296727 GTCTACTATTTGCGGTGGCC 58.703 55.000 0.00 0.00 38.85 5.36
2959 4054 0.928229 CGTCTACTATTTGCGGTGGC 59.072 55.000 0.00 0.00 40.52 5.01
2960 4055 1.567504 CCGTCTACTATTTGCGGTGG 58.432 55.000 0.00 0.00 37.87 4.61
2961 4056 0.928229 GCCGTCTACTATTTGCGGTG 59.072 55.000 0.00 0.00 43.78 4.94
2962 4057 0.179092 GGCCGTCTACTATTTGCGGT 60.179 55.000 0.00 0.00 43.78 5.68
2963 4058 1.213094 CGGCCGTCTACTATTTGCGG 61.213 60.000 19.50 0.00 44.60 5.69
2964 4059 0.526954 ACGGCCGTCTACTATTTGCG 60.527 55.000 28.70 0.00 0.00 4.85
2965 4060 1.648504 AACGGCCGTCTACTATTTGC 58.351 50.000 34.29 0.00 0.00 3.68
2966 4061 3.434299 ACAAAACGGCCGTCTACTATTTG 59.566 43.478 33.24 33.24 33.85 2.32
2967 4062 3.667360 ACAAAACGGCCGTCTACTATTT 58.333 40.909 34.29 23.61 0.00 1.40
2968 4063 3.323751 ACAAAACGGCCGTCTACTATT 57.676 42.857 34.29 18.64 0.00 1.73
2969 4064 3.323751 AACAAAACGGCCGTCTACTAT 57.676 42.857 34.29 12.54 0.00 2.12
2970 4065 2.818130 AACAAAACGGCCGTCTACTA 57.182 45.000 34.29 0.00 0.00 1.82
2971 4066 2.611224 CCTAACAAAACGGCCGTCTACT 60.611 50.000 34.29 13.92 0.00 2.57
2972 4067 1.728425 CCTAACAAAACGGCCGTCTAC 59.272 52.381 34.29 0.00 0.00 2.59
2973 4068 1.344114 ACCTAACAAAACGGCCGTCTA 59.656 47.619 34.29 16.24 0.00 2.59
2974 4069 0.107268 ACCTAACAAAACGGCCGTCT 59.893 50.000 34.29 17.37 0.00 4.18
2975 4070 1.794512 TACCTAACAAAACGGCCGTC 58.205 50.000 34.29 0.00 0.00 4.79
2976 4071 2.252976 TTACCTAACAAAACGGCCGT 57.747 45.000 28.70 28.70 0.00 5.68
2977 4072 2.159490 CCATTACCTAACAAAACGGCCG 60.159 50.000 26.86 26.86 0.00 6.13
2978 4073 2.416296 GCCATTACCTAACAAAACGGCC 60.416 50.000 0.00 0.00 0.00 6.13
2979 4074 2.729778 CGCCATTACCTAACAAAACGGC 60.730 50.000 0.00 0.00 0.00 5.68
2980 4075 2.743126 TCGCCATTACCTAACAAAACGG 59.257 45.455 0.00 0.00 0.00 4.44
2981 4076 3.726782 GCTCGCCATTACCTAACAAAACG 60.727 47.826 0.00 0.00 0.00 3.60
2982 4077 3.189702 TGCTCGCCATTACCTAACAAAAC 59.810 43.478 0.00 0.00 0.00 2.43
2983 4078 3.413327 TGCTCGCCATTACCTAACAAAA 58.587 40.909 0.00 0.00 0.00 2.44
2984 4079 3.060736 TGCTCGCCATTACCTAACAAA 57.939 42.857 0.00 0.00 0.00 2.83
2985 4080 2.772077 TGCTCGCCATTACCTAACAA 57.228 45.000 0.00 0.00 0.00 2.83
2986 4081 2.772077 TTGCTCGCCATTACCTAACA 57.228 45.000 0.00 0.00 0.00 2.41
2987 4082 2.548480 GGATTGCTCGCCATTACCTAAC 59.452 50.000 0.00 0.00 0.00 2.34
2988 4083 2.438021 AGGATTGCTCGCCATTACCTAA 59.562 45.455 0.00 0.00 0.00 2.69
2989 4084 2.047061 AGGATTGCTCGCCATTACCTA 58.953 47.619 0.00 0.00 0.00 3.08
2990 4085 0.839946 AGGATTGCTCGCCATTACCT 59.160 50.000 0.00 0.00 0.00 3.08
2991 4086 0.947244 CAGGATTGCTCGCCATTACC 59.053 55.000 0.00 0.00 0.00 2.85
2992 4087 0.947244 CCAGGATTGCTCGCCATTAC 59.053 55.000 0.00 0.00 0.00 1.89
2993 4088 0.819259 GCCAGGATTGCTCGCCATTA 60.819 55.000 0.00 0.00 0.00 1.90
2994 4089 2.123428 GCCAGGATTGCTCGCCATT 61.123 57.895 0.00 0.00 0.00 3.16
2995 4090 2.517875 GCCAGGATTGCTCGCCAT 60.518 61.111 0.00 0.00 0.00 4.40
2999 4094 3.570638 CTGCGCCAGGATTGCTCG 61.571 66.667 4.18 0.00 0.00 5.03
3000 4095 3.885521 GCTGCGCCAGGATTGCTC 61.886 66.667 4.18 0.00 31.21 4.26
3001 4096 4.728110 TGCTGCGCCAGGATTGCT 62.728 61.111 4.18 0.00 31.21 3.91
3002 4097 4.189188 CTGCTGCGCCAGGATTGC 62.189 66.667 4.18 0.00 30.16 3.56
3003 4098 1.783031 GATCTGCTGCGCCAGGATTG 61.783 60.000 4.18 0.00 30.16 2.67
3004 4099 1.525535 GATCTGCTGCGCCAGGATT 60.526 57.895 4.18 0.00 30.16 3.01
3005 4100 2.110627 GATCTGCTGCGCCAGGAT 59.889 61.111 4.18 3.26 30.16 3.24
3006 4101 4.166888 GGATCTGCTGCGCCAGGA 62.167 66.667 4.18 2.61 33.64 3.86
3007 4102 4.478371 TGGATCTGCTGCGCCAGG 62.478 66.667 4.18 0.00 33.64 4.45
3008 4103 3.200593 GTGGATCTGCTGCGCCAG 61.201 66.667 4.18 6.07 34.12 4.85
3009 4104 4.783621 GGTGGATCTGCTGCGCCA 62.784 66.667 4.18 0.00 44.75 5.69
3010 4105 4.783621 TGGTGGATCTGCTGCGCC 62.784 66.667 4.18 0.00 45.55 6.53
3011 4106 2.747460 TTGGTGGATCTGCTGCGC 60.747 61.111 0.00 0.00 0.00 6.09
3012 4107 1.078918 TCTTGGTGGATCTGCTGCG 60.079 57.895 0.00 0.00 0.00 5.18
3013 4108 1.375098 GCTCTTGGTGGATCTGCTGC 61.375 60.000 0.00 0.00 0.00 5.25
3014 4109 0.747283 GGCTCTTGGTGGATCTGCTG 60.747 60.000 0.00 0.00 0.00 4.41
3015 4110 0.913451 AGGCTCTTGGTGGATCTGCT 60.913 55.000 0.00 0.00 0.00 4.24
3016 4111 0.463474 GAGGCTCTTGGTGGATCTGC 60.463 60.000 7.40 0.00 0.00 4.26
3017 4112 0.907486 TGAGGCTCTTGGTGGATCTG 59.093 55.000 16.72 0.00 0.00 2.90
3018 4113 1.489649 CATGAGGCTCTTGGTGGATCT 59.510 52.381 19.68 0.00 0.00 2.75
3019 4114 1.487976 TCATGAGGCTCTTGGTGGATC 59.512 52.381 24.92 0.00 0.00 3.36
3020 4115 1.489649 CTCATGAGGCTCTTGGTGGAT 59.510 52.381 24.92 3.27 0.00 3.41
3021 4116 0.907486 CTCATGAGGCTCTTGGTGGA 59.093 55.000 24.92 9.26 0.00 4.02
3022 4117 0.107312 CCTCATGAGGCTCTTGGTGG 60.107 60.000 28.45 22.14 42.44 4.61
3023 4118 3.473147 CCTCATGAGGCTCTTGGTG 57.527 57.895 28.45 18.51 42.44 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.