>input_sequence_62339
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--------------------------------------------------CTATATATACCTCTCTTCCTCGGAGATTAC
TTGAGCAAAATTCGACGGTCACAA-AAAATACTGCAGCCTTTTTATTACGTCTGACTGACTGA----GGGGCGCTGCTTG
TTGGAT---------------------GGGGGACGGCGCGCTGCGGCGGCTGTTCGAGAAGCCGTTGCCGGAGAACCCCA
CGCTGCTGGAGGTGCTGTCGGCTTGCAACAACCACACCCACCACAAGAAGCTGCTGCCGGCCGTGGACCCGTCGTCCTTC
ACGGAGATCTTCGGTGAGCTCCACTTCCACGAGAAGCCCGA---------------------------------------
--CGGCGCCGCCGCCCGACACGTCCTGCCACGGGTGCCACTCCCTGATGCACGCGCTACGGCGGCGTCGTGGCTCGACAT
CGCTAGTCAGGCCGAGAAGAGCAAGGACGACTCGTCGCTGGACGCGCTCCTCAG---GCCGAAGCCCGCTGGCGCCGCGG
CCGCCCCCGGCGGCGTCAGGAGGAGCGCGAGCTTCTGCCTGAAGAAGAGCTCGGCTTCG------CTGCTGCTGTGCACA
GAGGGGCTCGGGTCCGAGAGCACGGTGGACTCGGACGACATGGTCAGGGATGACGGCGCCGACGCGGCCGCCGCCCTCCG
-AGGGAGGGAGAGGGAGGAAGCAACGCTGAGGGACGCAGCTGCTGCGGCGGAACCAGGGCTGAGGGAGTCC---------
-CCGCCGTCGTTCCCGCCGCCGATACGATCGATCGG---GCGCGGCGGGAAGCCGTGCGTGTGCTTCCGGACGTTCCGCG
CGGATGGGCGGTTCGTGCTGACGCAGGTGGTGATCCCCGGGAAGGAGCTGCTGCAGGCGTCCCGCGAGGGCGGCCGGCTC
AGGCTCCGGTTCGCCAACCCCGCCGCCGACGACGAC---GAGCTGGAGTTGGTGGATCAAGAAGATGAC---CGAGAAGA
CAACAGGACATGCATCGACGCCTGCGCTTAGTTAATTATGAATGGATTGTAGTAATTCGCCATGCAAGTGTGCTTCAACC
TGCAGAATCCGAAGCTGA-------TGACAAGCTGCAGCAACTACTACTCATATACTGCCTCTTGTTCCTTTTCTAA---
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----------------------------------------------------------
>chr4B_1_TraesCS4B01G117700
ATCATTTCGTGTTTGGATCATCATCATGTTGTTTTGAGGCTCATCCCCCCCCTGCCTTCACTAACTTATATGTATCTTGC
TTATGAGTAAATTTGTGGCCTTTTCTTCCTTTGTTGTACATGCATTTCTTCACTGCCTGGAGTGGGAAGTTTCTGGACGT
CCTGAACATGTGTTATTCTCATCCTGACCTTTCTCAAGTAAGGTCTCAACCATGGTATGCTGTATGCACGGTGTCCCCAC
ATCGCATCAGATAGCTTTATTCTGCCTTCCGCCCTTCATTCTTTTCGTTTGCTGAATCTGTCCCGAGATTTTCACAAAAA
G---AAGAAGTTATTCTAACCTTTTCTCCTTCGTTCCTTGTCGTTCGCCGAATCCACCATCAACTCTTTTCCAGTTTTCA
CGGAGAAAATGAAATTGCTGAAACAAAAACTCGCCGCGAGAGAAATTGCAATGCATTATCTTCTACTGTACCTAGCTTTC
TGCCTGTTCAGCTAGGAATGGAACAGATTCCTGTCTGCTGGTGCACTTGACACCAGTGCGATCCTCAGTGACAAGTGCAT
CGGCATCACCGGTCGGAGAAAATCGTCCCATTTTCTCCCAGGG-TTTTAAGTTTTAACCATCGCGGAATGTGCGAATTCG
ACCCGTTCCCGCGCCAGTTGGAGCTGGAATTCATTCACCAACAGAAATCCCAACCTTATCAGAAATTCGGTGATGCCAGG
GCAAAGATCACCATCAAATTTGTGCGAGCTGCAAATGCAAATGCAATGCTGCATCAGCTCTACCTGCATATTTCCATCTC
CCTGACATGTTGTGCAGGCCAGTGCTGAAGAACAGAGACAACTGTGCAAGATGCACGTTTCCAGTTCCTCC---CAAGTT
GCAGTAGGAGTATATACCGGCTCCACTTGTGAAATGAAAAGCCT---AAAAAACAAGAAACAAATTTCCGAATCCCGATT
CGACAGCCACATAAAAGCATCCGCCTTTCCTGGCCTCTCCTTTTCTCTCGCTATATATACCTCTCTTCCTCGGAGATTAC
TTGAGCAAAATTCGACGGTCACAA-AAAATACTGCAGCCTTTTTATTACGTCTGACTGACTGA----GGGGCGCTGCTTG
TTGGAT---------------------GGGGGACGGCGCGCTGCGGCGGCTGTTCGAGAAGCCGTTGCCGGAGAACCCCA
CGCTGCTGGAGGTGCTGTCGGCTTGCAACAACCACACCCACCACAAGAAGCTGCTGCCGGCCGTGGACCCGTCGTCCTTC
ACGGAGATCTTCGGTGAGCTCCACTTCCACGAGAAGCCCGA---------------------------------------
--CGGCGCCGCCGCCCGACACGTCCTGCCACGGGTGCCACTCCCTGATGCACGCGCTACGGCGGCGTCGTGGCTCGACAT
CGCTAGTCAGGCCGAGAAGAGCAAGGACGACTCGTCGCTGGACGCGCTCCTCAG---GCCGAAGCCCGCTGGCGCCGCGG
CCGCCCCCGGCGGCGTCAGGAGGAGCGCGAGCTTCTGCCTGAAGAAGAGCTCGGCTTCG------CTGCTGCTGTGCACA
GAGGGGCTCGGGTCCGAGAGCACGGTGGACTCGGACGACATGGTCAGGGATGACGGCGCCGACGCGGCCGCCGCCCTCCG
-AGGGAGGGAGAGGGAGGAAGCAACGCTGAGGGACGCAGCTGCTGCGGCGGAACCAGGGCTGAGGGAGTCC---------
-CCGCCGTCGTTCCCGCCGCCGATACGATCGATCGG---GCGCGGCGGGAAGCCGTGCGTGTGCTTCCGGACGTTCCGCG
CGGATGGGCGGTTCGTGCTGACGCAGGTGGTGATCCCCGGGAAGGAGCTGCTGCAGGCGTCCCGCGAGGGCGGCCGGCTC
AGGCTCCGGTTCGCCAACCCCGCCGCCGACGACGAC---GAGCTGGAGTTGGTGGATCAAGAAGATGAC---CGAGAAGA
CAACAGGACATGCATCGACGCCTGCGCTTAGTTAATTATGAATGGATTGTAGTAATTCGCCATGCAAGTGTGCTTCAACC
TGCAGAATCCGAAGCTGA-------TGACAAGCTGCAGCAACTACTACTCATATACTGCCTCTTGTTCCTTTTCTAAATA
TA---------AGAGATTCCAATATAAATTACTCTAAAAATATACTCCCTCCGTTCCTAAATATAAGTTTTTTTAGAGAT
ACCACTATGGACTACATACGGAGCAAAATAAATGAATCTACACTCTAAAATATGTCTATATACATCCGTATGTAGTTTGT
AGTGGAATCTCTAAAAAGAACTTACATTTAGGAACGGATGGAGTATATCAAAGTAGTACTCCCTACGCCCGCAAATACTT
GTCATCAAAATGGATAAAAAAATGTATTTAGAACTAATATACGTCTAAGTACATCCCCTTCTATTCATTTTGATGACAAG
TATTTCCGGACGGAGGGAGTACATACGAAGCAAAATATGTCTATACTCTAAAATATGAAGCAAAATATAAACTTCGTATG
TACTCTAAAATATACTTTAATACAGTACTACTGATGAATTGTAATAAGTCTTTTTTTCAA--------TACATAAGAAGC
AAAATGAGTG-AATCTACATTCTAAAATATGTCTACCATC-------------TGTATATAGTCTGTATTTTTTTTTAAA
GACTTATATTTA--------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------AAAAGGAGTGAGCAGTACTGTACTAAATTGAACTACA
AGGTTGATCATGCAAGCACATTGTTAACTAGTGAGTTCGT---------------------------------------A
GAAGGGACACTTGGCGATGGAATCCTTTGGGTGCAGGATGCCAAAATATCACTCAACCCAAAGCGAACGCGGTGCAATTT
TCTCTTTTCTCATATGCATCTTGCTCCTTCCCGGCCTTTTATTAGTTCCTGCTCCACTCTAGCTAGCTGCATCGTCACGA
GACTTGACTGATTTCCGTGGTCCATGACCGGACCGGCATGGGAAATGATGGGGAAAAGGCACTTTGATGGCCGACTCTTT
ACGTAGATGCAGCTACGCTAGCAGCTAGTCCAGGAGAGAGACGTCACTAAAAGGCCACCGCAAATAGTAGACGGCCGTTT
TGTTAGGTAATGGCGAGCAATCCTGGCGCAGCAGATCCACCAAGAGCCTCATGAGGTC
>chr4D_1
ATCATTTCGTGTTTGGATCATCATCATGTTGTTTTGAGGCTCAT-CCCCCCCTGCCTTCACTAACTTATATGTATCTTGC
TTATGAGTAAATTTGTGGCCTTTGCTTCCTTTGT---ACATGCATTTCTTCACTCCCTGGACCCGGAAGTTTCTGGACGT
CCTGAACATGTGTTATTCTCATCCTGACCTTTCTGAAGTGAGGCCTCAACCATGGTGTGCTGTATGCACGATGTCCCCTC
ATCGCATCAGATAGCTTTATTCTGCCTCCCGCCCTTCATTCTTTTCGTTTGCTGAATCTGTCCTGAGATTTTCAGAAAAA
T------AAGTTATTCTAACCTTTTCTACTTTGTTCCTTTTCGTTCATCGAATCCACCATCAACTCTTTTCCAGTTTTCA
CGGAGAAAATGAAATTTCTGAAACAAGAACTCACTGGGAGAGGAATTGAACGG------------------CTAGCTTTC
TGCCTGTTCAGCTAGGAATGGAACAGATTCCTGTCTCCAGGAGCACTTGACACCAATGCGGTCCTCAGTGACAAGTGCAT
CGGCATCACCGGTCGGAGAAAATCGTCCCATTTTCTCCCAGGGTTTTTAAGTTTTAACCGTCGCGGAATGTGCGAATTCG
ACCCGTTCCTGCGCCAGTTGGAGCCGTAATTCATTCACCAACAGGAATGCCAACCTTATCAGGAATTCGGTGATGCTAGG
GC-AAGATCACCATCAAATTTGTGCGAGCTGCAAATGCAA------TGCTGCATTAGCTCTGCCTGCAGATTTCCATC--
----ACATGTTGTGCAGGCCAGTGCTGAAGAACAGTGACAACTGTGCAAGATGCACATTTCCATTTCCTCCTCCCAAGTT
GCAGTAGGAGTATATACCAGCTCAACTTGTGAAATGAAAGGCCAAAAGAAAAACAAGAAACAAATTTCCGAATTCTGATT
CGACAGCCACATAAAAGCATCCGCCTTTCCTGGCCTCTCCTTTTCCCTCGCTATATATACCTCTCTTCCTCGGAGATTAC
TTGAGCAAAATTCGACGGTCACAAAAAAATACTGCAGCCTTTTTATTACGTCTGACTGACTGA----GGAGAGCTGCTTG
TTGGATGGCGCACATGGCGACGGCGGTGGGGGACGGCGCGCTGCGGCGGCTGTTCGAGAAGCCGTTGCCGGAGAACCCCA
CGCTGCTGGAGGTGCTGTCGGCCTGCAACAACCACGCCCACCACAAGAAGCTGCTGCCGGCCGTGGACCCGGCGTCCTTC
ACGGAGATCTTCGGTGAGCTCCACTTCCACGAGAAGCCCGA---------------------------------------
--CGGCGCCGCCGCCCGACCCGTCCTGCCACGGGTGCCACTCCCTGACGCACGCGCTACGGCGGCGTCGTGGCTCGACGT
CGCTAGTCAGGCCGAGAAGAGCAAGGACGACTCGTCGCTGGACGCGCTCCTCAG---GCCGAAGCCCGCGGGCGCCGCGG
CCGCCCCCGGCGGCGTCAGGAGGAGCGCGAGCTTCTGCCTGAAGAAGAGCTCGGCGTCG------CTGCTGCTGTGCACG
GAGGGGCTCGGGTCCGAGAGCACGGTGGACTCGGACGACATGGTCAGGGACGACGGCGCCGACGCGGCCGCCGCCCTCCG
-CGGGAGGGAGAGGGAGGAGGCAACGCTGAGAGACGCCGCCGCCGCGGCGGAACCAGGGCTGGGGGAGTCC---------
-CCGCCGTCGTTCCCGCCGCCGATACGGTCGATTGG---GCGCGGCGGGAAGCCGTGCGTGTGCTTCCGGACGTTCCGCG
CGGATGGGCGGTTCGTGCTGACGCAGGTGGTGATCCCCGGGAAGGAGCTGCTGCAGGCGTCCCGCGAGGGCGGCCGGCTC
AGGCTCCGGTTCGCCAACCCCGCCGCCGCCGACGAGGAGGAGCTGGAGTTGGGGGATCAAGAAGATGACGACCGCGAAGC
CAACAATGCATGCCTCGACGCCTGCGCTTAGTTAATTATGAATGGGTTGTAGTAATTCGCCATGCAAGTTTGCTTCAACC
TGCAGAATCCGAAGCTGA-------TGACAAGCTGCAGCAACTACTACTCATATACTGCCTCTTGTTCCTTTTCTAAATA
TAAATATTTTTAGAGATTCCAATATAAATTACTCTAAAAATATATATCAGAGT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AGTACATACGAAGCAAAATATGTCTATACACTAAAATATGAAGCAAAATATAAACTTCGTATA
TACTCTAAAATATACTTTAATACAATACTACTGATGGATTGTAGTAAGTCTTTTTTTTGCAACAGGAGTACATACAAAGC
AAAATGAGTG-------------AAAATATGTCTACCATC-------------TGTATTAAAATTTATAA-------AAA
GACTTATATTTAGGACGCCGATATCCACCACACGTGTGGCATAATAGGCATTTGCCCACACACCATGTGTGGCATGAGCA
GGGGGCAGCCCACACGGGCTGTGTGTCGGCGAACGGTAGAATTGCCCACACGTGTGGGCGTAGCTAATTCGTGCCACATG
CCCAACAAGTACTATTCATCCTCACTCCGCGCGTGTGGTACGAAGCAAATATGCCCACGCATCCTAGCGCAGCTACAAAT
AGGTACCCGCGGGATGACGATTTAGTTGTCATCCGGAATGACAGATGTAGTTATCCGGGATGACAAATATGGTTGTAAGA
GCATGGCAACACTCTCTGTTTTGGTTAACTATAGTTGCCATGTCTAATTTATGGCAGTTGCCGCGTGTAATTAAACCATA
GTTCTCATGTGTAATTAACTACTTGCCACATATGGTCAAACAATAGTTGCCATGTGTGTTTACCTAGTTGTCATGTGTGG
TTAATCGCAGTTGCCATGTATGTTTACCTGATTGCCACGTACGCGCAACTGCAGTTGCCGTCTAGCAAACGAATCATAGT
TGTCATGTGTGTTTACCTAGTTGTCATGTACGCGCAACTGCAGTTGCCATCCAACAACGTACGACTGTCGTGTGGGCGAA
AATCAGTTCGCCCACACGCGCGTGGACTAGGTGGTGGCTGTGTGGGCAGAAACTAGTTCGCCCACACAGCGCAGTTGGCA
ACCGCGTGCTGTGGGACGTGTGAGCGACCTCTCCAACGCCCACACACCGGCCTTGTCCTACGTGGCACACGAAAACTGCC
TCGGTGTGTCAAGATTCGTGCAAACTTAACTGGACGATGATCCAGGCGTGTGGGCGAATTGCAATGTTGCCACACATGTG
GGCATTAGTGTTTTCGTATATTTAAAAAGGAGGGAGTAGTACAAAAAAAAGGGAGTAGTACTGTACTAAATTGAACTACA
AAGTTGATCATGCAAGCACGTTGTTAACTAGTGAGTACGT---------------------------------------A
GAAGGGCCACTTGGCGATGGAATCCTTTGGGTGCAGCATGCCAAAATATCAATCAACCCAACGCGAACGCGGTGCAATTT
TCTCTTTTCCCATATGCATCTTGCTCCTCCCCGGCCTTTTATTAGTTCCTGCTCCACTCTAGCTAGCTGCATCGTCACGA
GACTTGACTGATCTCCGTGGTCCATGACCGGACCGGCATGGGAAATGATGGGGAAAAGGCACTTTGATCGCCGACTCTTT
ACGTAGATGCAGCTAAGCTAGCAGCTAGTCTAGGAGAGAGACGTC-----------------------------------
----------------------------------------------------------
>chr4A_1
ATCATTTCGTGTTTGGATCATCATCATGTTGTTTTGAGGCTCAT-CCCCCCCTGCCTTCACTAACTTATATGTATCTTGC
TTATGAGTAAATTTGTGGCCTTTGCTTCCTTTGTTGTACATACATTTCTTCACTCCCTGGACCCGGAAGTTTCTGGACGT
CCTGAACATGTGTTATTCTCACCCTGACCTTTCTGAAGTGAGGTCTCAACCATGGTATGCTGTATGCACGATGTCCCCTC
ATCGCATCAGATAGCTTTATTCCACCTTCCGCCCTTCATCCTTTTCGTTTGTTGAATCTGTCCCGAGATTTTCACAAGAA
AAAAAAGAAGTTATTCTAACCTTTTCTCCTTCGTTCCTTGTCGTTCGTCGAATCCACCGTGAACTCTTTTCCAGTTTTCA
CGGAGAAAATGAAATTGCTGAAACAAAAACTCACTGCGAGAGGAATTGCAGTGCGTTTTCCTCTAC-----CTAGCTTTC
TGCCTGTTCAGCTAGGAATGGAACAGATTCCTGTCTCCAGGGGCACTTGACACCAGTGCGATTTTCAGTGACAAGTGCAT
CACTGGTCG-----GGGGAAAATCGCCCCATTTTCTCCCAGGGTTTTTAA-------CCATCGCGGAATGTGCGAATTTG
AGCCGTTCCTGCGCCAGTTGGAGCCGGAATTCATTCACCAACAGGAATGCCAACCTTATCAGAAATTCGGTGATGCCAGG
GC-AGGATCACCATCAAATTTGTGCGAGCTGCAAATGCAA------TGCTGCATTAGCTCTACCTGCAGATTTCCCTTCC
TCTGACATGTTATGCAGGCCAGTGCTGAAGAACAGTGACAACTGTGCAAGATGCACATTTCCATTTCCTCATCCCAAGTT
GCAGCAGGAGTATATACCGGCTCCACTCGTGAAACGAAAAGCCT---GAAAAACAAGAAACATATTTTCGAATTCCGATT
CGACAGCCACATAAATGCATCCACCTTTCCTGGCCTCTCCTTTTCTCTCACTATATATACCTCTCTTCCTCGGAGATTAC
TTGAGCAAAATTCGACGGTCACA-AAAAATATCGCAGCCTTTTTATTACGTCTGTCTGACTGACTGAGGAGTGCTGCTTG
TTGGATGGCGCACATGGCGACGGCGGTGGGGGACGGCGCGCTGCGGCGGCTGTTCGAGAAGCCGTTGCCGGAGAACCCCA
CGCTGCTGGAGGTGCTGTCGGCTTGCAACAACCACAGCCACCACAAGAAGCAGCTGCCGGCCGTGGACCCGGCGTCCTTC
ACCGAGATCTTCGGTGAGCTACACTTCTACGGGAAGCCCGA---------------------------------------
--CGGCGGCGCCGCCCGACCCGTCCTGCCACGGGTGCCACTCCCTGACGCACGCGCTACGGCGGCGTCGTGGCTCGACAT
CGCTAGTCAGGCCGAGAAGAGCAATGACGACTCGTCGCTGGACGCGCTCCTCAG---GCCGAAGCCCGCGAGCGCCGGCG
ACGCCGCCGGTGGCGTCAGGAGGAGCGCGAGCTTCTGCCTGAAGAAGAGCTCGGCGTCG------CTGCTGCTGTGCACG
GAGGGGCTCGGGTCCGAGAGCACGGTGGACTCGGACGACATGGTCAGGGATGACGGCGCCGACGCGGCCGCCGCCCTCCG
-CGGGAGGGAGAGGGAGGAGGCGACGCTGAGGGACGCCGCCGCCGCGGCGGAGTCAGGGCTGGTGGGTTCG---------
-CCGCCGTCGTTCCCGCCGCCGATACGGTCGATCGG---GCGCGGCGGGAAGCCGTGCGTGTGCTTCCGGACGTTCCGCG
CGGATGGGCGGTTCGTGCTGACGCAGGTGGTGATCCCCGGGAAGGAGCTGCTGCAGGCGTCCCGCGAGGGCGGCCGGCTC
AGGCTCCGGTTCGCCAACCCCGCCGCCGCCGACGAGG---AGCTGGAGTTGGGGGATCAAGAAGATGAC---CGAGAAGA
CAACATGACATGCATCGACGCGTGCGCTTAGTTAATTATGAATGGATTGTAGTAATTCGCCATGCAAGTGTGCTTCAACC
TGCAGAATCCGAAGCTGACGAGTGATGACAAGCTACAGCAACTACTACTCATATACTGCCTCTTGTTCCTTTTCTAAATT
T-----TTTTTAGAGATTCCAATATAAACTACTCTAAAAATATATATCAA------------------------------
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-----------------AGTACATACGAAGCAAAATATGTCTATACTCTAAAATAGGAAGCAAAATATAAACTTCGTATG
GACTCTGGAATATACTTTAATACAGTACTATGGATTGTACTAGTAAGTC---TTTTTTGCAGTAGGAGTACATACGAAGC
AAAATGAAATAAATCTATATTTTAAAATATGTCTATCATCTATATATACAGTTTGTATTAAAATCTTTAA-------AAA
GACTTATATTTA--------------------------------------------------------------------
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-------------------------------------------AAAAGGAGAGAGTAGTACTGTATTAAATTGAACTACA
AGGTTGATCATGCAAGCACATTGTTAACTAGTGAGTACTTCCTCTATAAATTAATATAAGAGCGTTTAGAATACTACGAA
GAAGGGCCACTTGGCGATGGAATCCTTTGGATGCAGCATGCCAGAATATCAATCAACCCAACGCGAACGCGGTGCAATTT
TCTCTTTTCTCATATGCATCTTGCTC-------------------TTCCTGCTCCACTCTAGCTAGCTGCATCGTCACGA
GACTTGACTGATTTCCGTGGTCCATGACCGGACCGGCATTGGAAATGATGGGTAAAAGGCACTTTGATCGCCGACTCTTT
ACGTAGATGCAGCTAAGCTAGCAGCTAGTCTAGGAGAGAGACGTC-----------------------------------
----------------------------------------------------------
>chr5B_1112
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---------------------------GGCGGACGGCGGGCTGAGGAGGCTGTTCGAGAAGCCTCTGCCGGAGAACCCGA
CGCTGCTGGAGGCGCTGTCGGCGTGG---AACCGCGTCCACCCCAAGAGGC---------CCGTCGACCCGACATCCTTC
ACCGAGATCTTCGGTGAGCTCCACTTCCAAGAGAAGCA------G---CAGCCGGACCACGTCGCCCGGGGCAACGTCCT
GCCGGCGCCGCGTCCGCCGCCTT--------------CACCTCCTCTTGTTCGCGCGACCACGGTGTCGTCCTCGTCGTG
GATCGACGCCGCCGAGAAGAGCAAGGACGACTCGTCTCTCGACGCGCTCCTCAGGTCGCCGAAGCCCACGCCGACG----
--------------GTGAAGAGGAGCGCGAGCTTCTCCATGAAGAAGAGTCCGTCGGCATCGTCCCTGCTGCTCTGCACA
GAGGGGCTCGGGTCCGAGAGCACCGTGGACG---------TGCTGAGGGATGACGACGACGAGCTAGCCGCCGCTTTCCG
CCGCCAGGTGGAGACACGCGACGACGCGGACGTCGTCGACGC--------GAACCAGGAGGAAAAGGAGAACCAGCGGCC
TCCGCCGTCGTTCCCGCCCCCGATACGGTCGATCAGCGTGCGCGGCGGGAAGCCGAGCGTGTGCTTCCGGTCGTTCCGTG
CGGACGGCAGGTTCGTGCTGGTGGAGGTTGTCATCCCCGGGAAGGAGCTCCTGCGGGCGTCGCGCGAGGGCGGTCGGCTC
AGGCTGCAGTTCGCC-----------------------------------------------------------------
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>chr5A_1112
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---------------------------GGCGGACGGCGGGCTGAGGAGGCTGTTCGAGAAGCCTCTGCCGGAGAACCCGA
CGCTGCTGGAGGCGCTGTCGGCGTGG---AACCGCGTCCACCCCAAGAGGC---------CGGTCGACCCGACATCCTTC
ACCGAGATATTCGGCGAGCTCCACTTCCACGAGAAGCA------GCAGCAGCCGGACCACGTCGCCCGGGGCAACGTCCT
GCCGGCGCCGCGTCCGCCACCTT--------------CACCTCCTCTTGTTCGCGCGACCACGGTGTCGTCCTCGTCGTG
GATCGACGCCGCCGAGAAGAGCAAGGACGACTCGTCTCTCGACGCGCTCCTCAGGTCGCCGAAGCCCACGCCGACG----
--------------GTGAAGAGGAGCGCGAGCTTCTCCATGAAGAAGAGCCCGTCCGCGTCGTCCCTGCTGCTCTGCACA
GAGGGGCTCGGGTCCGAGAGCACCGTGGACG---------TGCTGAGGGATGACGACGACGAGCTAGCCGCCGCGTTCCG
CCGCCAGGTGGAGACACGCGACGACGCGGACGTGGTCGACGC--------GAACCAGGAGGAGAAGGAGAACCAGCGGCC
TCCGCCGTCGTTCCCGCCCCCGATACGGTCGATCAGCGTGCGCGGCGGGAAGCCGAGCGTGTGCTTCCGGTCGTTCCGTG
CGGAGGGCAGGTTCGTGCTGGTGGAGGTTGTCATCCCCGGGAAGGAGCTCCTGCGGGCGTCGCGCGAGGGCGGTCGGCTC
AGGCTGCAGTTCGCC-----------------------------------------------------------------
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>chr5D_1112
--------------------------------------------------------------------------------
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---------------------------GGCGGACGGCGGGTTGAGGAGGCTGTTCGAGAAGCCACTGCCGGAGAACCCGA
CGCTGCTGGAGGCGCTGTCGGCGTGG---AACCGCGTCCACCCCAAGAGGC---------CCGTCGACCCGACATCCTTC
ACCGAGATCTTCGGCGAGCTCCACTTCCAAGAGAAGCAGCAGCCG---CAGCCGGACCACGTCGCCCGGGGCGGTGTCCT
GCCGGCGCCGCGTCCGCCACCTT--------------CACCTCCTCTTGTTCGCGCGACCACGGTGTCGTCCTCGTCGTG
GATCGACGCCGCCGAGAAGAGCAAGGACGACTCGTCTCTCGACGCGCTCCTCAGGTCGCCGAAGCCCACGCCGACG----
--------------GTGAAGAGGAGCGCGAGCTTCTCCATGAAGAAGAGCCCGTCCGCGTCGTCCCTGCTGCTCTGCACA
GAGGGGCTCGGGTCCGAGAGCACCGTGGACG---------TGCTGAGGGATGACGACGACGAGCTAGCCGCCGCGTTCCG
CCGCCAGGTGGAGACAGGCGACGACGCGTACGTCGTCGACGC--------GAACCAGGAGGAGAAGGAGAACCAGCGGCC
TCCGCCGTCGTTCCCGCCCCCGATACGGTCGATCAGCGTGCGCGGCGGGAAGCCGAGCGTGTGCTTCCGGTCGTTCCGTC
CGGACGGCAGGTTCGTGCTGGTGGAGGTTGTCATCCCCGGGAAGGAGCTCCTGCGGGCGTCGCGCGAGGGCGGTCGGCTC
AGGCTGCAGTTCGC------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------
>SNPs
--------------------------------------------S-----------------------------------
-----------------------S------------------------------S------SSS----------------
----------------------------------S----S------------------------------S-------S-
--------------------------------------------------------------------------------
S----------------------------------------------S--------------------------------
--------------------------------S-S-------S-------S---S--S--S-----SSSSS---------
------------------------------------S-S--S--------------------------------------
--------------------------------------------------------------------------------
---------S--------------S-------------------S---S-------------------------------
--S-------------------------------------SSSSSS--------S-------------S---------S-
S----------------------------------S--------------------S------S----------------
-----------------------------------------------S-------------------------S------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S-S--------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
---------------------------------------------------------------------S----------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
-S-----------------S-----------------S--S--S------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S------S----------------S---------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------------------------------------------------------
------------------------------------S------S-------------SSS--------------S-----
-----------------S---S------------------------------------SS-SSS-S-SSSSSSSSSS---
--------------------------------------------------------------------------------
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---------------------------------------------------S---S------------------------
------------------------------------S-------------------------------------------
------S-----------------------------S--------------S---------S------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------S-----------
---------------S--------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_368
--------------------------------------------------------------------------------
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----------------------------CTTCGTTCCTTGTCGTTCGC--------------------------------
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>reverse_2479
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------------------------------------------------------------------------------AG
TATTTCCGGACGGAGGGA--------------------------------------------------------------
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