Multiple sequence alignment - TraesCS4B01G115900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G115900 chr4B 100.000 4247 0 0 1 4247 132846777 132851023 0.000000e+00 7843.0
1 TraesCS4B01G115900 chr4B 100.000 149 0 0 3632 3780 132850334 132850482 4.180000e-70 276.0
2 TraesCS4B01G115900 chr4B 100.000 149 0 0 3558 3706 132850408 132850556 4.180000e-70 276.0
3 TraesCS4B01G115900 chr4B 82.143 224 39 1 7 230 217657006 217657228 1.560000e-44 191.0
4 TraesCS4B01G115900 chr4B 100.000 75 0 0 3706 3780 132850334 132850408 5.730000e-29 139.0
5 TraesCS4B01G115900 chr4B 100.000 75 0 0 3558 3632 132850482 132850556 5.730000e-29 139.0
6 TraesCS4B01G115900 chr4B 95.294 85 4 0 4149 4233 132851009 132851093 7.410000e-28 135.0
7 TraesCS4B01G115900 chr4B 100.000 48 0 0 333 380 132846983 132847030 5.850000e-14 89.8
8 TraesCS4B01G115900 chr4B 87.143 70 9 0 376 445 95129908 95129977 3.520000e-11 80.5
9 TraesCS4B01G115900 chr4D 94.550 3119 103 27 550 3632 94252912 94255999 0.000000e+00 4756.0
10 TraesCS4B01G115900 chr4D 91.941 546 22 4 3706 4233 94255928 94256469 0.000000e+00 745.0
11 TraesCS4B01G115900 chr4D 88.485 330 23 7 2 331 94252541 94252855 6.660000e-103 385.0
12 TraesCS4B01G115900 chr4D 88.415 164 17 2 604 766 16087678 16087516 3.350000e-46 196.0
13 TraesCS4B01G115900 chr4D 86.286 175 18 5 376 545 94252793 94252966 7.250000e-43 185.0
14 TraesCS4B01G115900 chr4D 92.000 75 3 1 3632 3706 94255928 94255999 7.510000e-18 102.0
15 TraesCS4B01G115900 chr4D 95.349 43 2 0 901 943 380869770 380869812 7.620000e-08 69.4
16 TraesCS4B01G115900 chr4A 95.529 2729 97 11 927 3632 486648493 486645767 0.000000e+00 4340.0
17 TraesCS4B01G115900 chr4A 89.748 556 24 10 3709 4233 486645838 486645285 0.000000e+00 680.0
18 TraesCS4B01G115900 chr4A 88.520 331 23 4 1 331 486650317 486650002 1.850000e-103 387.0
19 TraesCS4B01G115900 chr4A 87.330 221 26 2 553 772 486649944 486649725 7.050000e-63 252.0
20 TraesCS4B01G115900 chr4A 86.364 176 20 4 376 548 486650064 486649890 5.610000e-44 189.0
21 TraesCS4B01G115900 chr4A 77.931 290 53 10 46 331 184259608 184259326 2.030000e-38 171.0
22 TraesCS4B01G115900 chr4A 94.444 72 4 0 3635 3706 486645838 486645767 1.250000e-20 111.0
23 TraesCS4B01G115900 chr4A 95.349 43 2 0 901 943 556843745 556843787 7.620000e-08 69.4
24 TraesCS4B01G115900 chr1D 82.822 326 52 4 7 331 187317126 187316804 5.370000e-74 289.0
25 TraesCS4B01G115900 chr1D 80.982 326 57 5 7 331 174005935 174005614 1.960000e-63 254.0
26 TraesCS4B01G115900 chr1D 84.848 198 27 3 608 804 470743976 470744171 3.350000e-46 196.0
27 TraesCS4B01G115900 chr5B 82.675 329 48 9 7 331 271791651 271791328 2.500000e-72 283.0
28 TraesCS4B01G115900 chr5D 85.714 203 24 5 601 801 9570452 9570651 4.300000e-50 209.0
29 TraesCS4B01G115900 chr3A 87.709 179 20 2 611 788 541547336 541547159 1.550000e-49 207.0
30 TraesCS4B01G115900 chr3A 83.019 212 35 1 7 218 269401159 269401369 1.560000e-44 191.0
31 TraesCS4B01G115900 chr3A 92.157 51 3 1 901 950 169847491 169847541 2.120000e-08 71.3
32 TraesCS4B01G115900 chr7D 83.491 212 26 7 7 214 297153440 297153234 5.610000e-44 189.0
33 TraesCS4B01G115900 chr7D 97.436 39 1 0 904 942 50134740 50134702 2.740000e-07 67.6
34 TraesCS4B01G115900 chr6D 82.710 214 35 2 7 219 199384238 199384450 5.610000e-44 189.0
35 TraesCS4B01G115900 chr6D 85.235 149 21 1 614 761 439914759 439914611 7.350000e-33 152.0
36 TraesCS4B01G115900 chr6D 97.500 40 1 0 904 943 28681353 28681314 7.620000e-08 69.4
37 TraesCS4B01G115900 chr2A 76.855 337 55 14 1 331 365390544 365390863 7.300000e-38 169.0
38 TraesCS4B01G115900 chr3D 93.750 48 2 1 904 950 158081996 158081949 2.120000e-08 71.3
39 TraesCS4B01G115900 chr6B 95.238 42 2 0 901 942 207171383 207171424 2.740000e-07 67.6
40 TraesCS4B01G115900 chr1A 97.436 39 1 0 904 942 527667725 527667687 2.740000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G115900 chr4B 132846777 132851023 4246 False 7843.000000 7843 100.0000 1 4247 1 chr4B.!!$F2 4246
1 TraesCS4B01G115900 chr4D 94252541 94256469 3928 False 1234.600000 4756 90.6524 2 4233 5 chr4D.!!$F2 4231
2 TraesCS4B01G115900 chr4A 486645285 486650317 5032 True 993.166667 4340 90.3225 1 4233 6 chr4A.!!$R2 4232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 542 0.034574 TTGCCGATGTACATGCCCTT 60.035 50.000 14.43 0.0 0.00 3.95 F
960 2076 0.391793 CTGCGTTCTTCCTTCTCCCC 60.392 60.000 0.00 0.0 0.00 4.81 F
1114 2230 0.602905 GTTCCCACCTCCAACACTCG 60.603 60.000 0.00 0.0 0.00 4.18 F
2711 3827 1.135915 GACACGAGTCATCCTCAGCAT 59.864 52.381 8.20 0.0 44.34 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2524 3640 5.544948 AGAACATAGTACCCACTGTTGGTTA 59.455 40.000 9.02 0.0 42.10 2.85 R
2954 4070 0.959553 TTTCTCGTTCAGCGGACTCT 59.040 50.000 0.00 0.0 41.72 3.24 R
3054 4170 1.534235 ACGACCTCAGCCCTCTTGT 60.534 57.895 0.00 0.0 0.00 3.16 R
3640 4781 0.034756 CACTGACCCGTGGTTGATCA 59.965 55.000 0.00 0.0 35.25 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.282021 CACTGATTAATGACTGGGGTGG 58.718 50.000 0.00 0.00 0.00 4.61
44 45 3.054434 CACTGATTAATGACTGGGGTGGA 60.054 47.826 0.00 0.00 0.00 4.02
45 46 3.200825 ACTGATTAATGACTGGGGTGGAG 59.799 47.826 0.00 0.00 0.00 3.86
46 47 3.455910 CTGATTAATGACTGGGGTGGAGA 59.544 47.826 0.00 0.00 0.00 3.71
47 48 4.047166 TGATTAATGACTGGGGTGGAGAT 58.953 43.478 0.00 0.00 0.00 2.75
48 49 5.223655 TGATTAATGACTGGGGTGGAGATA 58.776 41.667 0.00 0.00 0.00 1.98
49 50 5.669904 TGATTAATGACTGGGGTGGAGATAA 59.330 40.000 0.00 0.00 0.00 1.75
51 52 1.879575 TGACTGGGGTGGAGATAAGG 58.120 55.000 0.00 0.00 0.00 2.69
52 53 1.080498 TGACTGGGGTGGAGATAAGGT 59.920 52.381 0.00 0.00 0.00 3.50
53 54 1.486726 GACTGGGGTGGAGATAAGGTG 59.513 57.143 0.00 0.00 0.00 4.00
54 55 0.839946 CTGGGGTGGAGATAAGGTGG 59.160 60.000 0.00 0.00 0.00 4.61
55 56 0.419865 TGGGGTGGAGATAAGGTGGA 59.580 55.000 0.00 0.00 0.00 4.02
56 57 1.132500 GGGGTGGAGATAAGGTGGAG 58.868 60.000 0.00 0.00 0.00 3.86
57 58 0.470341 GGGTGGAGATAAGGTGGAGC 59.530 60.000 0.00 0.00 0.00 4.70
58 59 0.105039 GGTGGAGATAAGGTGGAGCG 59.895 60.000 0.00 0.00 0.00 5.03
59 60 0.105039 GTGGAGATAAGGTGGAGCGG 59.895 60.000 0.00 0.00 0.00 5.52
60 61 0.325296 TGGAGATAAGGTGGAGCGGT 60.325 55.000 0.00 0.00 0.00 5.68
61 62 0.105039 GGAGATAAGGTGGAGCGGTG 59.895 60.000 0.00 0.00 0.00 4.94
62 63 0.105039 GAGATAAGGTGGAGCGGTGG 59.895 60.000 0.00 0.00 0.00 4.61
63 64 1.523938 GATAAGGTGGAGCGGTGGC 60.524 63.158 0.00 0.00 40.37 5.01
64 65 2.252072 GATAAGGTGGAGCGGTGGCA 62.252 60.000 0.00 0.00 43.41 4.92
81 82 1.608801 GGCATTTTGGTGAAAGCCTGG 60.609 52.381 0.00 0.00 37.96 4.45
84 85 0.753479 TTTTGGTGAAAGCCTGGCGA 60.753 50.000 13.96 0.00 0.00 5.54
87 88 1.675641 GGTGAAAGCCTGGCGACAT 60.676 57.895 13.96 0.23 41.51 3.06
105 106 4.785453 GGAGCCTGGCGGGTTCTG 62.785 72.222 25.78 0.00 43.65 3.02
115 116 3.056328 GGGTTCTGGTCTTGGCGC 61.056 66.667 0.00 0.00 0.00 6.53
159 160 0.394488 CTGGTCTCGCTCCTCTGGTA 60.394 60.000 0.00 0.00 0.00 3.25
222 223 1.194781 TCCCTGAGGTGGTCTCTTGC 61.195 60.000 0.00 0.00 42.86 4.01
254 255 4.610333 TCTCTTAAGTCTAGTCATGCCCA 58.390 43.478 1.63 0.00 0.00 5.36
259 260 1.630369 AGTCTAGTCATGCCCAGCAAA 59.370 47.619 0.00 0.00 43.62 3.68
260 261 2.240667 AGTCTAGTCATGCCCAGCAAAT 59.759 45.455 0.00 0.00 43.62 2.32
320 321 2.074579 TCAGGGGGAAACAAATACCCA 58.925 47.619 0.00 0.00 45.19 4.51
331 332 7.382898 GGAAACAAATACCCATGTTTGTGTAT 58.617 34.615 11.58 3.79 46.05 2.29
332 333 7.544217 GGAAACAAATACCCATGTTTGTGTATC 59.456 37.037 11.58 10.36 46.05 2.24
333 334 7.775053 AACAAATACCCATGTTTGTGTATCT 57.225 32.000 11.58 0.00 46.05 1.98
334 335 7.156876 ACAAATACCCATGTTTGTGTATCTG 57.843 36.000 10.40 1.62 45.33 2.90
335 336 6.945435 ACAAATACCCATGTTTGTGTATCTGA 59.055 34.615 10.40 0.00 45.33 3.27
336 337 7.121168 ACAAATACCCATGTTTGTGTATCTGAG 59.879 37.037 10.40 0.00 45.33 3.35
337 338 3.955471 ACCCATGTTTGTGTATCTGAGG 58.045 45.455 0.00 0.00 0.00 3.86
338 339 3.330701 ACCCATGTTTGTGTATCTGAGGT 59.669 43.478 0.00 0.00 0.00 3.85
339 340 3.691118 CCCATGTTTGTGTATCTGAGGTG 59.309 47.826 0.00 0.00 0.00 4.00
340 341 3.691118 CCATGTTTGTGTATCTGAGGTGG 59.309 47.826 0.00 0.00 0.00 4.61
341 342 4.326826 CATGTTTGTGTATCTGAGGTGGT 58.673 43.478 0.00 0.00 0.00 4.16
342 343 4.002906 TGTTTGTGTATCTGAGGTGGTC 57.997 45.455 0.00 0.00 0.00 4.02
343 344 3.646162 TGTTTGTGTATCTGAGGTGGTCT 59.354 43.478 0.00 0.00 0.00 3.85
344 345 4.246458 GTTTGTGTATCTGAGGTGGTCTC 58.754 47.826 0.00 0.00 42.74 3.36
345 346 3.458044 TGTGTATCTGAGGTGGTCTCT 57.542 47.619 0.00 0.00 42.86 3.10
346 347 3.779444 TGTGTATCTGAGGTGGTCTCTT 58.221 45.455 0.00 0.00 42.86 2.85
347 348 3.511540 TGTGTATCTGAGGTGGTCTCTTG 59.488 47.826 0.00 0.00 42.86 3.02
348 349 2.497675 TGTATCTGAGGTGGTCTCTTGC 59.502 50.000 0.00 0.00 42.86 4.01
349 350 1.949799 ATCTGAGGTGGTCTCTTGCT 58.050 50.000 0.00 0.00 42.86 3.91
350 351 0.972134 TCTGAGGTGGTCTCTTGCTG 59.028 55.000 0.00 0.00 42.86 4.41
351 352 0.972134 CTGAGGTGGTCTCTTGCTGA 59.028 55.000 0.00 0.00 42.86 4.26
352 353 0.681733 TGAGGTGGTCTCTTGCTGAC 59.318 55.000 0.00 0.00 42.86 3.51
353 354 0.972883 GAGGTGGTCTCTTGCTGACT 59.027 55.000 0.00 0.00 39.38 3.41
354 355 1.346068 GAGGTGGTCTCTTGCTGACTT 59.654 52.381 0.00 0.00 39.38 3.01
355 356 1.071385 AGGTGGTCTCTTGCTGACTTG 59.929 52.381 0.00 0.00 35.04 3.16
356 357 0.871057 GTGGTCTCTTGCTGACTTGC 59.129 55.000 0.00 0.00 35.04 4.01
357 358 0.761187 TGGTCTCTTGCTGACTTGCT 59.239 50.000 0.00 0.00 35.04 3.91
358 359 1.141657 TGGTCTCTTGCTGACTTGCTT 59.858 47.619 0.00 0.00 35.04 3.91
359 360 1.803555 GGTCTCTTGCTGACTTGCTTC 59.196 52.381 0.00 0.00 35.04 3.86
360 361 2.549778 GGTCTCTTGCTGACTTGCTTCT 60.550 50.000 0.00 0.00 35.04 2.85
361 362 2.736192 GTCTCTTGCTGACTTGCTTCTC 59.264 50.000 0.00 0.00 0.00 2.87
362 363 2.632028 TCTCTTGCTGACTTGCTTCTCT 59.368 45.455 0.00 0.00 0.00 3.10
363 364 3.070734 TCTCTTGCTGACTTGCTTCTCTT 59.929 43.478 0.00 0.00 0.00 2.85
364 365 4.281941 TCTCTTGCTGACTTGCTTCTCTTA 59.718 41.667 0.00 0.00 0.00 2.10
365 366 4.960938 TCTTGCTGACTTGCTTCTCTTAA 58.039 39.130 0.00 0.00 0.00 1.85
366 367 4.993584 TCTTGCTGACTTGCTTCTCTTAAG 59.006 41.667 0.00 0.00 0.00 1.85
367 368 4.342862 TGCTGACTTGCTTCTCTTAAGT 57.657 40.909 1.63 0.00 37.36 2.24
368 369 4.310769 TGCTGACTTGCTTCTCTTAAGTC 58.689 43.478 1.63 8.88 46.45 3.01
369 370 4.039730 TGCTGACTTGCTTCTCTTAAGTCT 59.960 41.667 14.92 0.00 46.43 3.24
370 371 5.243954 TGCTGACTTGCTTCTCTTAAGTCTA 59.756 40.000 14.92 4.14 46.43 2.59
371 372 5.804979 GCTGACTTGCTTCTCTTAAGTCTAG 59.195 44.000 14.92 11.84 46.43 2.43
372 373 6.571537 GCTGACTTGCTTCTCTTAAGTCTAGT 60.572 42.308 14.92 1.44 46.43 2.57
373 374 6.915349 TGACTTGCTTCTCTTAAGTCTAGTC 58.085 40.000 14.92 9.56 46.43 2.59
374 375 6.490381 TGACTTGCTTCTCTTAAGTCTAGTCA 59.510 38.462 14.92 15.07 46.43 3.41
375 376 7.177568 TGACTTGCTTCTCTTAAGTCTAGTCAT 59.822 37.037 14.92 0.00 46.43 3.06
376 377 7.319646 ACTTGCTTCTCTTAAGTCTAGTCATG 58.680 38.462 1.63 0.00 29.12 3.07
377 378 5.655488 TGCTTCTCTTAAGTCTAGTCATGC 58.345 41.667 1.63 0.00 0.00 4.06
378 379 5.047188 GCTTCTCTTAAGTCTAGTCATGCC 58.953 45.833 1.63 0.00 0.00 4.40
379 380 5.596845 CTTCTCTTAAGTCTAGTCATGCCC 58.403 45.833 1.63 0.00 0.00 5.36
380 381 3.632604 TCTCTTAAGTCTAGTCATGCCCG 59.367 47.826 1.63 0.00 0.00 6.13
381 382 2.693591 TCTTAAGTCTAGTCATGCCCGG 59.306 50.000 1.63 0.00 0.00 5.73
382 383 1.410004 TAAGTCTAGTCATGCCCGGG 58.590 55.000 19.09 19.09 0.00 5.73
383 384 0.325296 AAGTCTAGTCATGCCCGGGA 60.325 55.000 29.31 10.35 0.00 5.14
384 385 0.757188 AGTCTAGTCATGCCCGGGAG 60.757 60.000 29.31 13.76 0.00 4.30
399 400 4.660938 GAGGCCCCGCAAACCTGT 62.661 66.667 0.00 0.00 32.67 4.00
400 401 4.974721 AGGCCCCGCAAACCTGTG 62.975 66.667 0.00 0.00 30.82 3.66
403 404 3.977244 CCCCGCAAACCTGTGCAC 61.977 66.667 10.75 10.75 45.19 4.57
404 405 2.906897 CCCGCAAACCTGTGCACT 60.907 61.111 19.41 0.00 45.19 4.40
405 406 1.599518 CCCGCAAACCTGTGCACTA 60.600 57.895 19.41 3.54 45.19 2.74
406 407 1.577328 CCCGCAAACCTGTGCACTAG 61.577 60.000 19.41 13.21 45.19 2.57
407 408 0.884704 CCGCAAACCTGTGCACTAGT 60.885 55.000 19.41 12.36 45.19 2.57
408 409 0.512952 CGCAAACCTGTGCACTAGTC 59.487 55.000 19.41 3.06 45.19 2.59
409 410 1.593196 GCAAACCTGTGCACTAGTCA 58.407 50.000 19.41 0.00 44.29 3.41
410 411 1.532868 GCAAACCTGTGCACTAGTCAG 59.467 52.381 19.41 6.33 44.29 3.51
413 414 1.599047 CCTGTGCACTAGTCAGGGG 59.401 63.158 19.41 9.02 43.30 4.79
414 415 0.904865 CCTGTGCACTAGTCAGGGGA 60.905 60.000 19.41 0.00 43.30 4.81
415 416 0.976641 CTGTGCACTAGTCAGGGGAA 59.023 55.000 19.41 0.00 0.00 3.97
416 417 1.347707 CTGTGCACTAGTCAGGGGAAA 59.652 52.381 19.41 0.00 0.00 3.13
417 418 1.071699 TGTGCACTAGTCAGGGGAAAC 59.928 52.381 19.41 0.00 0.00 2.78
418 419 1.071699 GTGCACTAGTCAGGGGAAACA 59.928 52.381 10.32 0.00 0.00 2.83
419 420 1.771854 TGCACTAGTCAGGGGAAACAA 59.228 47.619 0.00 0.00 0.00 2.83
420 421 2.173782 TGCACTAGTCAGGGGAAACAAA 59.826 45.455 0.00 0.00 0.00 2.83
421 422 3.181434 TGCACTAGTCAGGGGAAACAAAT 60.181 43.478 0.00 0.00 0.00 2.32
422 423 4.042311 TGCACTAGTCAGGGGAAACAAATA 59.958 41.667 0.00 0.00 0.00 1.40
423 424 4.395231 GCACTAGTCAGGGGAAACAAATAC 59.605 45.833 0.00 0.00 0.00 1.89
424 425 4.941873 CACTAGTCAGGGGAAACAAATACC 59.058 45.833 0.00 0.00 0.00 2.73
425 426 4.850386 ACTAGTCAGGGGAAACAAATACCT 59.150 41.667 0.00 0.00 0.00 3.08
426 427 4.302559 AGTCAGGGGAAACAAATACCTC 57.697 45.455 0.00 0.00 0.00 3.85
427 428 3.916989 AGTCAGGGGAAACAAATACCTCT 59.083 43.478 0.00 0.00 34.51 3.69
428 429 5.098663 AGTCAGGGGAAACAAATACCTCTA 58.901 41.667 0.00 0.00 32.19 2.43
429 430 5.731678 AGTCAGGGGAAACAAATACCTCTAT 59.268 40.000 0.00 0.00 32.19 1.98
430 431 6.217693 AGTCAGGGGAAACAAATACCTCTATT 59.782 38.462 0.00 0.00 32.19 1.73
431 432 6.890268 GTCAGGGGAAACAAATACCTCTATTT 59.110 38.462 0.00 0.00 32.19 1.40
432 433 8.050930 GTCAGGGGAAACAAATACCTCTATTTA 58.949 37.037 0.00 0.00 32.19 1.40
433 434 8.787818 TCAGGGGAAACAAATACCTCTATTTAT 58.212 33.333 0.00 0.00 32.19 1.40
434 435 8.850156 CAGGGGAAACAAATACCTCTATTTATG 58.150 37.037 0.00 0.00 32.19 1.90
435 436 8.566109 AGGGGAAACAAATACCTCTATTTATGT 58.434 33.333 0.00 0.00 32.19 2.29
436 437 9.856162 GGGGAAACAAATACCTCTATTTATGTA 57.144 33.333 0.00 0.00 31.80 2.29
445 446 6.726490 ACCTCTATTTATGTACACCGACAT 57.274 37.500 0.00 0.00 42.68 3.06
447 448 6.157211 CCTCTATTTATGTACACCGACATCC 58.843 44.000 0.00 0.00 40.54 3.51
448 449 6.239204 CCTCTATTTATGTACACCGACATCCA 60.239 42.308 0.00 0.00 40.54 3.41
453 454 4.811969 ATGTACACCGACATCCAAAGTA 57.188 40.909 0.00 0.00 34.97 2.24
490 493 2.077821 TAACACGAGCACTGCGTCCA 62.078 55.000 0.00 0.00 40.44 4.02
504 507 1.374560 CGTCCACACACACCTTTGAA 58.625 50.000 0.00 0.00 0.00 2.69
523 526 5.633830 TGAAGGAGAGATTTGTTCATTGC 57.366 39.130 0.00 0.00 0.00 3.56
524 527 4.460382 TGAAGGAGAGATTTGTTCATTGCC 59.540 41.667 0.00 0.00 0.00 4.52
525 528 3.012518 AGGAGAGATTTGTTCATTGCCG 58.987 45.455 0.00 0.00 0.00 5.69
526 529 3.009723 GGAGAGATTTGTTCATTGCCGA 58.990 45.455 0.00 0.00 0.00 5.54
527 530 3.629398 GGAGAGATTTGTTCATTGCCGAT 59.371 43.478 0.00 0.00 0.00 4.18
528 531 4.497006 GGAGAGATTTGTTCATTGCCGATG 60.497 45.833 0.00 0.00 37.08 3.84
529 532 4.012374 AGAGATTTGTTCATTGCCGATGT 58.988 39.130 0.00 0.00 37.06 3.06
530 533 5.185454 AGAGATTTGTTCATTGCCGATGTA 58.815 37.500 0.00 0.00 37.06 2.29
531 534 5.065218 AGAGATTTGTTCATTGCCGATGTAC 59.935 40.000 0.00 0.00 36.78 2.90
532 535 4.699735 AGATTTGTTCATTGCCGATGTACA 59.300 37.500 0.00 0.00 42.17 2.90
533 536 5.357878 AGATTTGTTCATTGCCGATGTACAT 59.642 36.000 8.43 8.43 42.98 2.29
534 537 4.354071 TTGTTCATTGCCGATGTACATG 57.646 40.909 14.43 5.74 42.98 3.21
535 538 2.097304 TGTTCATTGCCGATGTACATGC 59.903 45.455 14.43 12.08 39.98 4.06
536 539 1.308047 TCATTGCCGATGTACATGCC 58.692 50.000 14.43 0.00 37.06 4.40
537 540 0.311790 CATTGCCGATGTACATGCCC 59.688 55.000 14.43 0.00 0.00 5.36
538 541 0.183492 ATTGCCGATGTACATGCCCT 59.817 50.000 14.43 0.00 0.00 5.19
539 542 0.034574 TTGCCGATGTACATGCCCTT 60.035 50.000 14.43 0.00 0.00 3.95
540 543 0.034574 TGCCGATGTACATGCCCTTT 60.035 50.000 14.43 0.00 0.00 3.11
541 544 1.102978 GCCGATGTACATGCCCTTTT 58.897 50.000 14.43 0.00 0.00 2.27
542 545 2.294074 GCCGATGTACATGCCCTTTTA 58.706 47.619 14.43 0.00 0.00 1.52
543 546 2.884639 GCCGATGTACATGCCCTTTTAT 59.115 45.455 14.43 0.00 0.00 1.40
544 547 3.317993 GCCGATGTACATGCCCTTTTATT 59.682 43.478 14.43 0.00 0.00 1.40
545 548 4.792704 GCCGATGTACATGCCCTTTTATTG 60.793 45.833 14.43 0.00 0.00 1.90
546 549 4.290155 CGATGTACATGCCCTTTTATTGC 58.710 43.478 14.43 0.00 0.00 3.56
547 550 3.773860 TGTACATGCCCTTTTATTGCG 57.226 42.857 0.00 0.00 0.00 4.85
548 551 3.085533 TGTACATGCCCTTTTATTGCGT 58.914 40.909 0.00 0.00 0.00 5.24
549 552 2.939460 ACATGCCCTTTTATTGCGTC 57.061 45.000 0.00 0.00 0.00 5.19
550 553 2.166829 ACATGCCCTTTTATTGCGTCA 58.833 42.857 0.00 0.00 0.00 4.35
551 554 2.560542 ACATGCCCTTTTATTGCGTCAA 59.439 40.909 0.00 0.00 0.00 3.18
552 555 3.006323 ACATGCCCTTTTATTGCGTCAAA 59.994 39.130 0.00 0.00 0.00 2.69
553 556 3.019933 TGCCCTTTTATTGCGTCAAAC 57.980 42.857 0.00 0.00 0.00 2.93
554 557 2.362397 TGCCCTTTTATTGCGTCAAACA 59.638 40.909 0.00 0.00 0.00 2.83
555 558 3.006323 TGCCCTTTTATTGCGTCAAACAT 59.994 39.130 0.00 0.00 0.00 2.71
556 559 3.612423 GCCCTTTTATTGCGTCAAACATC 59.388 43.478 0.00 0.00 0.00 3.06
557 560 4.618227 GCCCTTTTATTGCGTCAAACATCT 60.618 41.667 0.00 0.00 0.00 2.90
558 561 5.469479 CCCTTTTATTGCGTCAAACATCTT 58.531 37.500 0.00 0.00 0.00 2.40
559 562 5.925969 CCCTTTTATTGCGTCAAACATCTTT 59.074 36.000 0.00 0.00 0.00 2.52
560 563 6.128849 CCCTTTTATTGCGTCAAACATCTTTG 60.129 38.462 0.00 0.00 38.56 2.77
561 564 6.640499 CCTTTTATTGCGTCAAACATCTTTGA 59.360 34.615 0.00 0.00 42.93 2.69
562 565 7.148918 CCTTTTATTGCGTCAAACATCTTTGAG 60.149 37.037 0.00 0.00 45.22 3.02
563 566 3.624326 TTGCGTCAAACATCTTTGAGG 57.376 42.857 10.64 10.64 45.22 3.86
564 567 1.879380 TGCGTCAAACATCTTTGAGGG 59.121 47.619 15.07 4.77 45.22 4.30
565 568 1.200020 GCGTCAAACATCTTTGAGGGG 59.800 52.381 15.07 2.78 45.22 4.79
566 569 2.778299 CGTCAAACATCTTTGAGGGGA 58.222 47.619 7.91 0.00 45.22 4.81
570 573 4.021981 GTCAAACATCTTTGAGGGGAAAGG 60.022 45.833 0.00 0.00 45.22 3.11
577 580 3.958147 TCTTTGAGGGGAAAGGTTTGTTC 59.042 43.478 0.00 0.00 34.27 3.18
608 611 5.732247 GCTTACACATGCCCTTTTATTACGG 60.732 44.000 0.00 0.00 0.00 4.02
609 612 3.958018 ACACATGCCCTTTTATTACGGA 58.042 40.909 0.00 0.00 0.00 4.69
624 627 4.757799 TTACGGATGTGTTTGGATTGTG 57.242 40.909 0.00 0.00 0.00 3.33
625 628 2.857483 ACGGATGTGTTTGGATTGTGA 58.143 42.857 0.00 0.00 0.00 3.58
638 641 2.821969 GGATTGTGACCAAAGTGCATCT 59.178 45.455 0.00 0.00 33.44 2.90
649 652 5.990996 ACCAAAGTGCATCTTACCAAAATTG 59.009 36.000 0.00 0.00 35.02 2.32
719 723 2.167075 GGCATGCCAATAAACTCAAGCT 59.833 45.455 32.08 0.00 35.81 3.74
722 726 5.039333 GCATGCCAATAAACTCAAGCTAAG 58.961 41.667 6.36 0.00 0.00 2.18
743 747 8.666573 GCTAAGTCTAGTTCATTTTTCTTACCC 58.333 37.037 0.00 0.00 0.00 3.69
751 755 4.415596 TCATTTTTCTTACCCATGCTGGT 58.584 39.130 0.00 0.00 42.62 4.00
768 772 5.447757 TGCTGGTCAAATCATGGATAATCA 58.552 37.500 0.00 0.00 0.00 2.57
769 773 5.892686 TGCTGGTCAAATCATGGATAATCAA 59.107 36.000 0.00 0.00 0.00 2.57
770 774 6.380560 TGCTGGTCAAATCATGGATAATCAAA 59.619 34.615 0.00 0.00 0.00 2.69
771 775 7.093421 TGCTGGTCAAATCATGGATAATCAAAA 60.093 33.333 0.00 0.00 0.00 2.44
772 776 7.223387 GCTGGTCAAATCATGGATAATCAAAAC 59.777 37.037 0.00 0.00 0.00 2.43
773 777 7.555087 TGGTCAAATCATGGATAATCAAAACC 58.445 34.615 0.00 0.00 0.00 3.27
774 778 7.399765 TGGTCAAATCATGGATAATCAAAACCT 59.600 33.333 0.00 0.00 0.00 3.50
775 779 7.922811 GGTCAAATCATGGATAATCAAAACCTC 59.077 37.037 0.00 0.00 0.00 3.85
776 780 8.469200 GTCAAATCATGGATAATCAAAACCTCA 58.531 33.333 0.00 0.00 0.00 3.86
777 781 9.033711 TCAAATCATGGATAATCAAAACCTCAA 57.966 29.630 0.00 0.00 0.00 3.02
778 782 9.826574 CAAATCATGGATAATCAAAACCTCAAT 57.173 29.630 0.00 0.00 0.00 2.57
780 784 8.771521 ATCATGGATAATCAAAACCTCAATCA 57.228 30.769 0.00 0.00 0.00 2.57
874 945 2.705730 CCACACCACGGATTACATCAA 58.294 47.619 0.00 0.00 0.00 2.57
877 948 2.028839 ACACCACGGATTACATCAACGA 60.029 45.455 0.00 0.00 0.00 3.85
878 949 2.997303 CACCACGGATTACATCAACGAA 59.003 45.455 0.00 0.00 0.00 3.85
911 982 5.762179 ATCCACAGAGTATTCTTTGGTGA 57.238 39.130 17.24 3.03 46.77 4.02
921 992 1.691196 TCTTTGGTGAGGCAACCTTG 58.309 50.000 10.31 2.07 41.16 3.61
943 2059 2.288763 GGCATAAACCAAACACACCCTG 60.289 50.000 0.00 0.00 0.00 4.45
946 2062 0.968393 AAACCAAACACACCCTGCGT 60.968 50.000 0.00 0.00 0.00 5.24
960 2076 0.391793 CTGCGTTCTTCCTTCTCCCC 60.392 60.000 0.00 0.00 0.00 4.81
997 2113 2.125512 GCGCTCATCAACCTCCGT 60.126 61.111 0.00 0.00 0.00 4.69
1114 2230 0.602905 GTTCCCACCTCCAACACTCG 60.603 60.000 0.00 0.00 0.00 4.18
1125 2241 1.673033 CCAACACTCGAAGCCTACAGG 60.673 57.143 0.00 0.00 38.53 4.00
1147 2263 1.746615 CGCCCATCCACACTTCCAG 60.747 63.158 0.00 0.00 0.00 3.86
1289 2405 4.893601 GCTCTCCGCGCTAACCCC 62.894 72.222 5.56 0.00 0.00 4.95
1374 2490 4.082523 GCCGCCAGCTACACCTCA 62.083 66.667 0.00 0.00 38.99 3.86
1643 2759 2.649034 GTGGCGTTCTCCTCGTCA 59.351 61.111 0.00 0.00 40.54 4.35
1670 2786 2.900337 CCTGCCCGCGGAATTACC 60.900 66.667 30.73 7.81 0.00 2.85
2175 3291 3.023119 GGTATGCATGGTCATGGACAAA 58.977 45.455 10.16 0.00 41.89 2.83
2488 3604 4.463891 AGTCCATAAAAATGTTGAGCTGGG 59.536 41.667 0.00 0.00 0.00 4.45
2524 3640 6.208644 CGAAAAGATTGTTTGAGTTGGATGT 58.791 36.000 0.00 0.00 0.00 3.06
2547 3663 4.648651 AACCAACAGTGGGTACTATGTTC 58.351 43.478 0.00 0.00 45.94 3.18
2711 3827 1.135915 GACACGAGTCATCCTCAGCAT 59.864 52.381 8.20 0.00 44.34 3.79
2954 4070 7.035004 GCCATGCAGTAATCAAGTTTATTTCA 58.965 34.615 0.00 0.00 0.00 2.69
2955 4071 7.221452 GCCATGCAGTAATCAAGTTTATTTCAG 59.779 37.037 0.00 0.00 0.00 3.02
3054 4170 5.479375 GGAGATTATTGGTGATAGGGTCGTA 59.521 44.000 0.00 0.00 0.00 3.43
3080 4196 0.179108 GGCTGAGGTCGTGATACCAC 60.179 60.000 0.00 0.00 42.40 4.16
3134 4250 8.657074 TTATGTACAGGTCGATTTATTTCCAG 57.343 34.615 0.33 0.00 0.00 3.86
3157 4275 7.050377 CAGGACATATTGTTACACCTCATCTT 58.950 38.462 0.00 0.00 0.00 2.40
3267 4385 7.042389 GCCTTTTCTGTAAGATCTGCATACTAC 60.042 40.741 0.00 0.00 46.36 2.73
3302 4420 1.264288 CAAGTTGGTTCAAGGAGACGC 59.736 52.381 0.00 0.00 0.00 5.19
3303 4421 0.759346 AGTTGGTTCAAGGAGACGCT 59.241 50.000 0.00 0.00 0.00 5.07
3308 4426 1.066858 GGTTCAAGGAGACGCTGATCA 60.067 52.381 0.00 0.00 0.00 2.92
3452 4570 3.758755 TCTTGCAGGTAGGCATATCAG 57.241 47.619 0.00 0.00 44.48 2.90
3495 4613 3.635268 CTGCTGGGGAGCCAAGGAC 62.635 68.421 0.00 0.00 0.00 3.85
3517 4635 1.967319 AAAGCACCTGATGTTCACGT 58.033 45.000 0.00 0.00 0.00 4.49
3521 4639 0.943835 CACCTGATGTTCACGTGCGA 60.944 55.000 11.67 0.00 29.48 5.10
3523 4641 0.943835 CCTGATGTTCACGTGCGACA 60.944 55.000 21.35 21.35 0.00 4.35
3524 4642 0.858583 CTGATGTTCACGTGCGACAA 59.141 50.000 22.41 6.06 0.00 3.18
3571 4712 2.153645 ACAAGCAACGCAGATTGATCA 58.846 42.857 11.88 0.00 0.00 2.92
3573 4714 2.907910 AGCAACGCAGATTGATCAAC 57.092 45.000 11.07 5.15 0.00 3.18
3614 4755 6.187727 TGAGGAAATTTTGAGGAGTACTGT 57.812 37.500 0.00 0.00 0.00 3.55
3615 4756 6.231211 TGAGGAAATTTTGAGGAGTACTGTC 58.769 40.000 0.00 0.00 0.00 3.51
3616 4757 6.183361 TGAGGAAATTTTGAGGAGTACTGTCA 60.183 38.462 0.00 0.00 0.00 3.58
3617 4758 6.601332 AGGAAATTTTGAGGAGTACTGTCAA 58.399 36.000 0.00 6.64 0.00 3.18
3618 4759 7.060421 AGGAAATTTTGAGGAGTACTGTCAAA 58.940 34.615 19.37 19.37 38.19 2.69
3619 4760 7.013369 AGGAAATTTTGAGGAGTACTGTCAAAC 59.987 37.037 21.60 13.86 39.34 2.93
3620 4761 7.201785 GGAAATTTTGAGGAGTACTGTCAAACA 60.202 37.037 21.60 15.69 39.34 2.83
3621 4762 7.823745 AATTTTGAGGAGTACTGTCAAACAT 57.176 32.000 21.60 16.68 39.34 2.71
3622 4763 7.823745 ATTTTGAGGAGTACTGTCAAACATT 57.176 32.000 21.60 11.89 39.34 2.71
3623 4764 6.861065 TTTGAGGAGTACTGTCAAACATTC 57.139 37.500 19.37 1.73 35.71 2.67
3624 4765 5.545063 TGAGGAGTACTGTCAAACATTCA 57.455 39.130 0.00 0.00 0.00 2.57
3625 4766 5.541845 TGAGGAGTACTGTCAAACATTCAG 58.458 41.667 0.00 0.00 35.60 3.02
3626 4767 4.319177 AGGAGTACTGTCAAACATTCAGC 58.681 43.478 0.00 0.00 33.12 4.26
3627 4768 3.123621 GGAGTACTGTCAAACATTCAGCG 59.876 47.826 0.00 0.00 33.12 5.18
3628 4769 3.067106 AGTACTGTCAAACATTCAGCGG 58.933 45.455 0.00 0.00 33.12 5.52
3629 4770 1.967319 ACTGTCAAACATTCAGCGGT 58.033 45.000 0.00 0.00 33.12 5.68
3630 4771 2.297701 ACTGTCAAACATTCAGCGGTT 58.702 42.857 0.00 0.00 33.12 4.44
3631 4772 3.472652 ACTGTCAAACATTCAGCGGTTA 58.527 40.909 0.00 0.00 33.12 2.85
3632 4773 3.880490 ACTGTCAAACATTCAGCGGTTAA 59.120 39.130 0.00 0.00 33.12 2.01
3633 4774 4.217754 TGTCAAACATTCAGCGGTTAAC 57.782 40.909 0.00 0.00 0.00 2.01
3647 4788 3.670203 CGGTTAACGCAGATTGATCAAC 58.330 45.455 11.07 5.15 34.82 3.18
3648 4789 3.485216 CGGTTAACGCAGATTGATCAACC 60.485 47.826 11.07 0.00 34.82 3.77
3649 4790 3.438781 GGTTAACGCAGATTGATCAACCA 59.561 43.478 11.07 0.00 35.38 3.67
3650 4791 4.403453 GTTAACGCAGATTGATCAACCAC 58.597 43.478 11.07 5.70 0.00 4.16
3651 4792 1.078709 ACGCAGATTGATCAACCACG 58.921 50.000 11.07 11.81 0.00 4.94
3652 4793 0.374758 CGCAGATTGATCAACCACGG 59.625 55.000 11.07 7.47 0.00 4.94
3653 4794 0.734889 GCAGATTGATCAACCACGGG 59.265 55.000 11.07 5.20 0.00 5.28
3654 4795 1.950484 GCAGATTGATCAACCACGGGT 60.950 52.381 11.07 0.00 37.65 5.28
3655 4796 2.009774 CAGATTGATCAACCACGGGTC 58.990 52.381 11.07 2.46 33.12 4.46
3656 4797 1.628340 AGATTGATCAACCACGGGTCA 59.372 47.619 11.07 0.00 33.12 4.02
3657 4798 2.009774 GATTGATCAACCACGGGTCAG 58.990 52.381 11.07 0.00 33.12 3.51
3658 4799 0.762418 TTGATCAACCACGGGTCAGT 59.238 50.000 3.38 0.00 33.12 3.41
3659 4800 0.034756 TGATCAACCACGGGTCAGTG 59.965 55.000 0.00 0.00 41.53 3.66
3660 4801 0.320374 GATCAACCACGGGTCAGTGA 59.680 55.000 2.94 0.00 44.43 3.41
3661 4802 0.984230 ATCAACCACGGGTCAGTGAT 59.016 50.000 0.00 0.62 44.43 3.06
3662 4803 0.034756 TCAACCACGGGTCAGTGATG 59.965 55.000 0.00 0.00 44.43 3.07
3663 4804 1.302511 AACCACGGGTCAGTGATGC 60.303 57.895 0.00 0.00 44.43 3.91
3664 4805 1.768684 AACCACGGGTCAGTGATGCT 61.769 55.000 0.00 0.00 44.43 3.79
3665 4806 1.003355 CCACGGGTCAGTGATGCTT 60.003 57.895 0.00 0.00 44.43 3.91
3666 4807 1.300971 CCACGGGTCAGTGATGCTTG 61.301 60.000 0.00 0.00 44.43 4.01
3667 4808 0.320683 CACGGGTCAGTGATGCTTGA 60.321 55.000 0.00 0.00 44.43 3.02
3668 4809 0.036952 ACGGGTCAGTGATGCTTGAG 60.037 55.000 0.00 0.00 0.00 3.02
3669 4810 0.742281 CGGGTCAGTGATGCTTGAGG 60.742 60.000 0.00 0.00 0.00 3.86
3670 4811 0.615331 GGGTCAGTGATGCTTGAGGA 59.385 55.000 0.00 0.00 0.00 3.71
3671 4812 1.003580 GGGTCAGTGATGCTTGAGGAA 59.996 52.381 0.00 0.00 0.00 3.36
3672 4813 2.553028 GGGTCAGTGATGCTTGAGGAAA 60.553 50.000 0.00 0.00 0.00 3.13
3673 4814 3.350833 GGTCAGTGATGCTTGAGGAAAT 58.649 45.455 0.00 0.00 0.00 2.17
3674 4815 3.760684 GGTCAGTGATGCTTGAGGAAATT 59.239 43.478 0.00 0.00 0.00 1.82
3675 4816 4.219288 GGTCAGTGATGCTTGAGGAAATTT 59.781 41.667 0.00 0.00 0.00 1.82
3676 4817 5.279156 GGTCAGTGATGCTTGAGGAAATTTT 60.279 40.000 0.00 0.00 0.00 1.82
3677 4818 5.632347 GTCAGTGATGCTTGAGGAAATTTTG 59.368 40.000 0.00 0.00 0.00 2.44
3678 4819 5.535783 TCAGTGATGCTTGAGGAAATTTTGA 59.464 36.000 0.00 0.00 0.00 2.69
3679 4820 5.862323 CAGTGATGCTTGAGGAAATTTTGAG 59.138 40.000 0.00 0.00 0.00 3.02
3680 4821 5.047519 AGTGATGCTTGAGGAAATTTTGAGG 60.048 40.000 0.00 0.00 0.00 3.86
3681 4822 5.047802 GTGATGCTTGAGGAAATTTTGAGGA 60.048 40.000 0.00 0.00 0.00 3.71
3682 4823 5.184479 TGATGCTTGAGGAAATTTTGAGGAG 59.816 40.000 0.00 0.00 0.00 3.69
3683 4824 4.473444 TGCTTGAGGAAATTTTGAGGAGT 58.527 39.130 0.00 0.00 0.00 3.85
3684 4825 5.630121 TGCTTGAGGAAATTTTGAGGAGTA 58.370 37.500 0.00 0.00 0.00 2.59
3685 4826 5.473504 TGCTTGAGGAAATTTTGAGGAGTAC 59.526 40.000 0.00 0.00 0.00 2.73
3686 4827 5.707764 GCTTGAGGAAATTTTGAGGAGTACT 59.292 40.000 0.00 0.00 0.00 2.73
3687 4828 6.348868 GCTTGAGGAAATTTTGAGGAGTACTG 60.349 42.308 0.00 0.00 0.00 2.74
3688 4829 6.187727 TGAGGAAATTTTGAGGAGTACTGT 57.812 37.500 0.00 0.00 0.00 3.55
3689 4830 6.231211 TGAGGAAATTTTGAGGAGTACTGTC 58.769 40.000 0.00 0.00 0.00 3.51
3690 4831 6.183361 TGAGGAAATTTTGAGGAGTACTGTCA 60.183 38.462 0.00 0.00 0.00 3.58
3691 4832 6.601332 AGGAAATTTTGAGGAGTACTGTCAA 58.399 36.000 0.00 6.64 0.00 3.18
3692 4833 7.060421 AGGAAATTTTGAGGAGTACTGTCAAA 58.940 34.615 19.37 19.37 38.19 2.69
3693 4834 7.013369 AGGAAATTTTGAGGAGTACTGTCAAAC 59.987 37.037 21.60 13.86 39.34 2.93
3694 4835 7.201785 GGAAATTTTGAGGAGTACTGTCAAACA 60.202 37.037 21.60 15.69 39.34 2.83
3695 4836 7.823745 AATTTTGAGGAGTACTGTCAAACAT 57.176 32.000 21.60 16.68 39.34 2.71
3696 4837 7.823745 ATTTTGAGGAGTACTGTCAAACATT 57.176 32.000 21.60 11.89 39.34 2.71
3697 4838 6.861065 TTTGAGGAGTACTGTCAAACATTC 57.139 37.500 19.37 1.73 35.71 2.67
3698 4839 5.545063 TGAGGAGTACTGTCAAACATTCA 57.455 39.130 0.00 0.00 0.00 2.57
3699 4840 5.541845 TGAGGAGTACTGTCAAACATTCAG 58.458 41.667 0.00 0.00 35.60 3.02
3700 4841 4.319177 AGGAGTACTGTCAAACATTCAGC 58.681 43.478 0.00 0.00 33.12 4.26
3701 4842 3.123621 GGAGTACTGTCAAACATTCAGCG 59.876 47.826 0.00 0.00 33.12 5.18
3702 4843 3.067106 AGTACTGTCAAACATTCAGCGG 58.933 45.455 0.00 0.00 33.12 5.52
3703 4844 1.967319 ACTGTCAAACATTCAGCGGT 58.033 45.000 0.00 0.00 33.12 5.68
3704 4845 2.297701 ACTGTCAAACATTCAGCGGTT 58.702 42.857 0.00 0.00 33.12 4.44
3705 4846 3.472652 ACTGTCAAACATTCAGCGGTTA 58.527 40.909 0.00 0.00 33.12 2.85
3706 4847 3.880490 ACTGTCAAACATTCAGCGGTTAA 59.120 39.130 0.00 0.00 33.12 2.01
3707 4848 4.217754 TGTCAAACATTCAGCGGTTAAC 57.782 40.909 0.00 0.00 0.00 2.01
3721 4862 3.670203 CGGTTAACGCAGATTGATCAAC 58.330 45.455 11.07 5.15 34.82 3.18
3722 4863 3.485216 CGGTTAACGCAGATTGATCAACC 60.485 47.826 11.07 0.00 34.82 3.77
3723 4864 3.438781 GGTTAACGCAGATTGATCAACCA 59.561 43.478 11.07 0.00 35.38 3.67
3724 4865 4.403453 GTTAACGCAGATTGATCAACCAC 58.597 43.478 11.07 5.70 0.00 4.16
3725 4866 1.078709 ACGCAGATTGATCAACCACG 58.921 50.000 11.07 11.81 0.00 4.94
3726 4867 0.374758 CGCAGATTGATCAACCACGG 59.625 55.000 11.07 7.47 0.00 4.94
3727 4868 0.734889 GCAGATTGATCAACCACGGG 59.265 55.000 11.07 5.20 0.00 5.28
3728 4869 1.950484 GCAGATTGATCAACCACGGGT 60.950 52.381 11.07 0.00 37.65 5.28
3729 4870 2.009774 CAGATTGATCAACCACGGGTC 58.990 52.381 11.07 2.46 33.12 4.46
3730 4871 1.628340 AGATTGATCAACCACGGGTCA 59.372 47.619 11.07 0.00 33.12 4.02
3731 4872 2.009774 GATTGATCAACCACGGGTCAG 58.990 52.381 11.07 0.00 33.12 3.51
3732 4873 0.762418 TTGATCAACCACGGGTCAGT 59.238 50.000 3.38 0.00 33.12 3.41
3733 4874 0.034756 TGATCAACCACGGGTCAGTG 59.965 55.000 0.00 0.00 41.53 3.66
3734 4875 0.320374 GATCAACCACGGGTCAGTGA 59.680 55.000 2.94 0.00 44.43 3.41
3735 4876 0.984230 ATCAACCACGGGTCAGTGAT 59.016 50.000 0.00 0.62 44.43 3.06
3736 4877 0.034756 TCAACCACGGGTCAGTGATG 59.965 55.000 0.00 0.00 44.43 3.07
3737 4878 1.302511 AACCACGGGTCAGTGATGC 60.303 57.895 0.00 0.00 44.43 3.91
3738 4879 1.768684 AACCACGGGTCAGTGATGCT 61.769 55.000 0.00 0.00 44.43 3.79
3739 4880 1.003355 CCACGGGTCAGTGATGCTT 60.003 57.895 0.00 0.00 44.43 3.91
3740 4881 1.300971 CCACGGGTCAGTGATGCTTG 61.301 60.000 0.00 0.00 44.43 4.01
3741 4882 0.320683 CACGGGTCAGTGATGCTTGA 60.321 55.000 0.00 0.00 44.43 3.02
3742 4883 0.036952 ACGGGTCAGTGATGCTTGAG 60.037 55.000 0.00 0.00 0.00 3.02
3743 4884 0.742281 CGGGTCAGTGATGCTTGAGG 60.742 60.000 0.00 0.00 0.00 3.86
3744 4885 0.615331 GGGTCAGTGATGCTTGAGGA 59.385 55.000 0.00 0.00 0.00 3.71
3745 4886 1.003580 GGGTCAGTGATGCTTGAGGAA 59.996 52.381 0.00 0.00 0.00 3.36
3746 4887 2.553028 GGGTCAGTGATGCTTGAGGAAA 60.553 50.000 0.00 0.00 0.00 3.13
3747 4888 3.350833 GGTCAGTGATGCTTGAGGAAAT 58.649 45.455 0.00 0.00 0.00 2.17
3748 4889 3.760684 GGTCAGTGATGCTTGAGGAAATT 59.239 43.478 0.00 0.00 0.00 1.82
3749 4890 4.219288 GGTCAGTGATGCTTGAGGAAATTT 59.781 41.667 0.00 0.00 0.00 1.82
3750 4891 5.279156 GGTCAGTGATGCTTGAGGAAATTTT 60.279 40.000 0.00 0.00 0.00 1.82
3751 4892 5.632347 GTCAGTGATGCTTGAGGAAATTTTG 59.368 40.000 0.00 0.00 0.00 2.44
3752 4893 5.535783 TCAGTGATGCTTGAGGAAATTTTGA 59.464 36.000 0.00 0.00 0.00 2.69
3753 4894 5.862323 CAGTGATGCTTGAGGAAATTTTGAG 59.138 40.000 0.00 0.00 0.00 3.02
3754 4895 5.047519 AGTGATGCTTGAGGAAATTTTGAGG 60.048 40.000 0.00 0.00 0.00 3.86
3755 4896 5.047802 GTGATGCTTGAGGAAATTTTGAGGA 60.048 40.000 0.00 0.00 0.00 3.71
3756 4897 5.184479 TGATGCTTGAGGAAATTTTGAGGAG 59.816 40.000 0.00 0.00 0.00 3.69
3757 4898 4.473444 TGCTTGAGGAAATTTTGAGGAGT 58.527 39.130 0.00 0.00 0.00 3.85
3758 4899 5.630121 TGCTTGAGGAAATTTTGAGGAGTA 58.370 37.500 0.00 0.00 0.00 2.59
3759 4900 5.473504 TGCTTGAGGAAATTTTGAGGAGTAC 59.526 40.000 0.00 0.00 0.00 2.73
3760 4901 5.707764 GCTTGAGGAAATTTTGAGGAGTACT 59.292 40.000 0.00 0.00 0.00 2.73
3761 4902 6.348868 GCTTGAGGAAATTTTGAGGAGTACTG 60.349 42.308 0.00 0.00 0.00 2.74
3807 4948 1.129437 GTACGGTGTACAGGAGACGAC 59.871 57.143 0.00 0.00 0.00 4.34
3898 5056 1.784525 ATTCAGGCTATTAGCGCGAC 58.215 50.000 12.10 0.04 43.62 5.19
3955 5114 1.273886 GATACGATGAGGGAAGCCTCC 59.726 57.143 0.00 0.00 41.59 4.30
3956 5115 0.261991 TACGATGAGGGAAGCCTCCT 59.738 55.000 0.32 0.00 42.05 3.69
4054 5219 2.754552 CAATGATCATGGTGAACCGGTT 59.245 45.455 22.50 22.50 39.43 4.44
4119 5292 0.988145 CCACTATCCAGAAGGGCCCA 60.988 60.000 27.56 0.78 36.21 5.36
4189 5362 0.449388 GCCTGGAAGTGATTCAAGCG 59.551 55.000 0.00 0.00 0.00 4.68
4203 5376 1.950216 TCAAGCGTGCAATGGTTTGTA 59.050 42.857 2.18 0.00 41.47 2.41
4235 5408 9.747898 AAGGTATTTAAGTGATCATGTTTACCA 57.252 29.630 17.42 3.52 0.00 3.25
4236 5409 9.920946 AGGTATTTAAGTGATCATGTTTACCAT 57.079 29.630 17.42 8.28 0.00 3.55
4241 5414 6.609237 AAGTGATCATGTTTACCATCATCG 57.391 37.500 0.00 0.00 34.02 3.84
4242 5415 5.674525 AGTGATCATGTTTACCATCATCGT 58.325 37.500 0.00 0.00 34.02 3.73
4243 5416 6.115446 AGTGATCATGTTTACCATCATCGTT 58.885 36.000 0.00 0.00 34.02 3.85
4244 5417 6.037500 AGTGATCATGTTTACCATCATCGTTG 59.962 38.462 0.00 0.00 34.02 4.10
4245 5418 6.037062 GTGATCATGTTTACCATCATCGTTGA 59.963 38.462 0.00 0.00 34.02 3.18
4246 5419 6.258507 TGATCATGTTTACCATCATCGTTGAG 59.741 38.462 2.21 0.00 34.02 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 0.105039 CCACCGCTCCACCTTATCTC 59.895 60.000 0.00 0.00 0.00 2.75
44 45 1.972660 GCCACCGCTCCACCTTATCT 61.973 60.000 0.00 0.00 0.00 1.98
45 46 1.523938 GCCACCGCTCCACCTTATC 60.524 63.158 0.00 0.00 0.00 1.75
46 47 1.635817 ATGCCACCGCTCCACCTTAT 61.636 55.000 0.00 0.00 35.36 1.73
47 48 1.847798 AATGCCACCGCTCCACCTTA 61.848 55.000 0.00 0.00 35.36 2.69
48 49 2.713531 AAATGCCACCGCTCCACCTT 62.714 55.000 0.00 0.00 35.36 3.50
49 50 2.713531 AAAATGCCACCGCTCCACCT 62.714 55.000 0.00 0.00 35.36 4.00
51 52 1.080569 CAAAATGCCACCGCTCCAC 60.081 57.895 0.00 0.00 35.36 4.02
52 53 2.274645 CCAAAATGCCACCGCTCCA 61.275 57.895 0.00 0.00 35.36 3.86
53 54 2.275380 ACCAAAATGCCACCGCTCC 61.275 57.895 0.00 0.00 35.36 4.70
54 55 1.080569 CACCAAAATGCCACCGCTC 60.081 57.895 0.00 0.00 35.36 5.03
55 56 1.112315 TTCACCAAAATGCCACCGCT 61.112 50.000 0.00 0.00 35.36 5.52
56 57 0.249657 TTTCACCAAAATGCCACCGC 60.250 50.000 0.00 0.00 0.00 5.68
57 58 1.782044 CTTTCACCAAAATGCCACCG 58.218 50.000 0.00 0.00 0.00 4.94
58 59 1.511850 GCTTTCACCAAAATGCCACC 58.488 50.000 0.00 0.00 0.00 4.61
59 60 1.070601 AGGCTTTCACCAAAATGCCAC 59.929 47.619 13.81 0.00 40.61 5.01
60 61 1.070445 CAGGCTTTCACCAAAATGCCA 59.930 47.619 13.81 0.00 40.61 4.92
61 62 1.608801 CCAGGCTTTCACCAAAATGCC 60.609 52.381 5.63 5.63 39.49 4.40
62 63 1.799544 CCAGGCTTTCACCAAAATGC 58.200 50.000 0.00 0.00 0.00 3.56
63 64 1.799544 GCCAGGCTTTCACCAAAATG 58.200 50.000 3.29 0.00 0.00 2.32
64 65 0.318120 CGCCAGGCTTTCACCAAAAT 59.682 50.000 10.54 0.00 0.00 1.82
137 138 0.172352 CAGAGGAGCGAGACCAGTTC 59.828 60.000 0.00 0.00 0.00 3.01
222 223 6.919721 ACTAGACTTAAGAGAAGCAAGTCAG 58.080 40.000 10.09 11.54 46.85 3.51
320 321 4.287067 AGACCACCTCAGATACACAAACAT 59.713 41.667 0.00 0.00 0.00 2.71
331 332 0.972134 CAGCAAGAGACCACCTCAGA 59.028 55.000 0.00 0.00 44.40 3.27
332 333 0.972134 TCAGCAAGAGACCACCTCAG 59.028 55.000 0.00 0.00 44.40 3.35
333 334 0.681733 GTCAGCAAGAGACCACCTCA 59.318 55.000 0.00 0.00 44.40 3.86
334 335 0.972883 AGTCAGCAAGAGACCACCTC 59.027 55.000 0.00 0.00 42.28 3.85
335 336 1.071385 CAAGTCAGCAAGAGACCACCT 59.929 52.381 0.00 0.00 36.68 4.00
336 337 1.517242 CAAGTCAGCAAGAGACCACC 58.483 55.000 0.00 0.00 36.68 4.61
337 338 0.871057 GCAAGTCAGCAAGAGACCAC 59.129 55.000 0.00 0.00 36.68 4.16
338 339 0.761187 AGCAAGTCAGCAAGAGACCA 59.239 50.000 0.00 0.00 36.68 4.02
339 340 1.803555 GAAGCAAGTCAGCAAGAGACC 59.196 52.381 0.00 0.00 36.68 3.85
340 341 2.736192 GAGAAGCAAGTCAGCAAGAGAC 59.264 50.000 0.00 0.00 36.85 3.36
341 342 2.632028 AGAGAAGCAAGTCAGCAAGAGA 59.368 45.455 0.00 0.00 36.85 3.10
342 343 3.042871 AGAGAAGCAAGTCAGCAAGAG 57.957 47.619 0.00 0.00 36.85 2.85
343 344 3.482156 AAGAGAAGCAAGTCAGCAAGA 57.518 42.857 0.00 0.00 36.85 3.02
344 345 4.754114 ACTTAAGAGAAGCAAGTCAGCAAG 59.246 41.667 10.09 0.00 36.85 4.01
345 346 4.708177 ACTTAAGAGAAGCAAGTCAGCAA 58.292 39.130 10.09 0.00 36.85 3.91
346 347 4.039730 AGACTTAAGAGAAGCAAGTCAGCA 59.960 41.667 10.09 0.00 46.85 4.41
347 348 4.565022 AGACTTAAGAGAAGCAAGTCAGC 58.435 43.478 10.09 0.00 46.85 4.26
348 349 6.919721 ACTAGACTTAAGAGAAGCAAGTCAG 58.080 40.000 10.09 11.54 46.85 3.51
349 350 6.490381 TGACTAGACTTAAGAGAAGCAAGTCA 59.510 38.462 10.09 13.42 46.85 3.41
350 351 6.915349 TGACTAGACTTAAGAGAAGCAAGTC 58.085 40.000 10.09 11.33 45.49 3.01
351 352 6.902771 TGACTAGACTTAAGAGAAGCAAGT 57.097 37.500 10.09 2.72 35.27 3.16
352 353 6.255453 GCATGACTAGACTTAAGAGAAGCAAG 59.745 42.308 10.09 4.48 0.00 4.01
353 354 6.102663 GCATGACTAGACTTAAGAGAAGCAA 58.897 40.000 10.09 0.00 0.00 3.91
354 355 5.394663 GGCATGACTAGACTTAAGAGAAGCA 60.395 44.000 10.09 6.05 0.00 3.91
355 356 5.047188 GGCATGACTAGACTTAAGAGAAGC 58.953 45.833 10.09 0.83 0.00 3.86
356 357 5.596845 GGGCATGACTAGACTTAAGAGAAG 58.403 45.833 10.09 5.43 0.00 2.85
357 358 4.098044 CGGGCATGACTAGACTTAAGAGAA 59.902 45.833 10.09 0.00 0.00 2.87
358 359 3.632604 CGGGCATGACTAGACTTAAGAGA 59.367 47.826 10.09 0.00 0.00 3.10
359 360 3.243569 CCGGGCATGACTAGACTTAAGAG 60.244 52.174 10.09 0.00 0.00 2.85
360 361 2.693591 CCGGGCATGACTAGACTTAAGA 59.306 50.000 10.09 0.00 0.00 2.10
361 362 2.224066 CCCGGGCATGACTAGACTTAAG 60.224 54.545 8.08 0.00 0.00 1.85
362 363 1.760613 CCCGGGCATGACTAGACTTAA 59.239 52.381 8.08 0.00 0.00 1.85
363 364 1.063492 TCCCGGGCATGACTAGACTTA 60.063 52.381 18.49 0.00 0.00 2.24
364 365 0.325296 TCCCGGGCATGACTAGACTT 60.325 55.000 18.49 0.00 0.00 3.01
365 366 0.757188 CTCCCGGGCATGACTAGACT 60.757 60.000 18.49 0.00 0.00 3.24
366 367 1.742768 CTCCCGGGCATGACTAGAC 59.257 63.158 18.49 0.00 0.00 2.59
367 368 1.457643 CCTCCCGGGCATGACTAGA 60.458 63.158 18.49 0.00 0.00 2.43
368 369 3.142393 CCTCCCGGGCATGACTAG 58.858 66.667 18.49 5.76 0.00 2.57
382 383 4.660938 ACAGGTTTGCGGGGCCTC 62.661 66.667 0.84 0.00 0.00 4.70
383 384 4.974721 CACAGGTTTGCGGGGCCT 62.975 66.667 0.84 0.00 0.00 5.19
386 387 3.977244 GTGCACAGGTTTGCGGGG 61.977 66.667 13.17 0.00 46.20 5.73
387 388 1.577328 CTAGTGCACAGGTTTGCGGG 61.577 60.000 21.04 0.00 46.20 6.13
388 389 0.884704 ACTAGTGCACAGGTTTGCGG 60.885 55.000 21.04 0.55 46.20 5.69
389 390 0.512952 GACTAGTGCACAGGTTTGCG 59.487 55.000 21.04 0.18 46.20 4.85
390 391 1.532868 CTGACTAGTGCACAGGTTTGC 59.467 52.381 21.04 6.10 43.31 3.68
391 392 2.146342 CCTGACTAGTGCACAGGTTTG 58.854 52.381 21.04 12.39 44.06 2.93
392 393 1.072331 CCCTGACTAGTGCACAGGTTT 59.928 52.381 21.04 0.00 46.61 3.27
393 394 0.687354 CCCTGACTAGTGCACAGGTT 59.313 55.000 21.04 0.00 46.61 3.50
394 395 1.194781 CCCCTGACTAGTGCACAGGT 61.195 60.000 21.04 16.61 46.61 4.00
396 397 0.976641 TTCCCCTGACTAGTGCACAG 59.023 55.000 21.04 16.16 0.00 3.66
397 398 1.071699 GTTTCCCCTGACTAGTGCACA 59.928 52.381 21.04 4.13 0.00 4.57
398 399 1.071699 TGTTTCCCCTGACTAGTGCAC 59.928 52.381 9.40 9.40 0.00 4.57
399 400 1.429930 TGTTTCCCCTGACTAGTGCA 58.570 50.000 0.00 0.00 0.00 4.57
400 401 2.561478 TTGTTTCCCCTGACTAGTGC 57.439 50.000 0.00 0.00 0.00 4.40
401 402 4.941873 GGTATTTGTTTCCCCTGACTAGTG 59.058 45.833 0.00 0.00 0.00 2.74
402 403 4.850386 AGGTATTTGTTTCCCCTGACTAGT 59.150 41.667 0.00 0.00 0.00 2.57
403 404 5.189934 AGAGGTATTTGTTTCCCCTGACTAG 59.810 44.000 0.00 0.00 0.00 2.57
404 405 5.098663 AGAGGTATTTGTTTCCCCTGACTA 58.901 41.667 0.00 0.00 0.00 2.59
405 406 3.916989 AGAGGTATTTGTTTCCCCTGACT 59.083 43.478 0.00 0.00 0.00 3.41
406 407 4.302559 AGAGGTATTTGTTTCCCCTGAC 57.697 45.455 0.00 0.00 0.00 3.51
407 408 6.652205 AATAGAGGTATTTGTTTCCCCTGA 57.348 37.500 0.00 0.00 0.00 3.86
408 409 8.850156 CATAAATAGAGGTATTTGTTTCCCCTG 58.150 37.037 1.45 0.00 38.93 4.45
409 410 8.566109 ACATAAATAGAGGTATTTGTTTCCCCT 58.434 33.333 1.45 0.00 38.93 4.79
410 411 8.762481 ACATAAATAGAGGTATTTGTTTCCCC 57.238 34.615 1.45 0.00 38.93 4.81
415 416 9.321562 CGGTGTACATAAATAGAGGTATTTGTT 57.678 33.333 0.00 0.00 38.93 2.83
416 417 8.698210 TCGGTGTACATAAATAGAGGTATTTGT 58.302 33.333 0.00 0.00 38.93 2.83
417 418 8.975439 GTCGGTGTACATAAATAGAGGTATTTG 58.025 37.037 0.00 0.00 38.93 2.32
418 419 8.698210 TGTCGGTGTACATAAATAGAGGTATTT 58.302 33.333 0.00 0.00 41.05 1.40
419 420 8.241497 TGTCGGTGTACATAAATAGAGGTATT 57.759 34.615 0.00 0.00 0.00 1.89
420 421 7.828508 TGTCGGTGTACATAAATAGAGGTAT 57.171 36.000 0.00 0.00 0.00 2.73
421 422 7.040201 GGATGTCGGTGTACATAAATAGAGGTA 60.040 40.741 0.00 0.00 40.17 3.08
422 423 6.239232 GGATGTCGGTGTACATAAATAGAGGT 60.239 42.308 0.00 0.00 40.17 3.85
423 424 6.157211 GGATGTCGGTGTACATAAATAGAGG 58.843 44.000 0.00 0.00 40.17 3.69
424 425 6.745116 TGGATGTCGGTGTACATAAATAGAG 58.255 40.000 0.00 0.00 40.17 2.43
425 426 6.718522 TGGATGTCGGTGTACATAAATAGA 57.281 37.500 0.00 0.00 40.17 1.98
426 427 7.494625 ACTTTGGATGTCGGTGTACATAAATAG 59.505 37.037 0.00 0.00 40.17 1.73
427 428 7.332557 ACTTTGGATGTCGGTGTACATAAATA 58.667 34.615 0.00 0.00 40.17 1.40
428 429 6.177610 ACTTTGGATGTCGGTGTACATAAAT 58.822 36.000 0.00 0.00 40.17 1.40
429 430 5.553123 ACTTTGGATGTCGGTGTACATAAA 58.447 37.500 0.00 0.00 40.17 1.40
430 431 5.155278 ACTTTGGATGTCGGTGTACATAA 57.845 39.130 0.00 0.00 40.17 1.90
431 432 4.811969 ACTTTGGATGTCGGTGTACATA 57.188 40.909 0.00 0.00 40.17 2.29
432 433 3.695830 ACTTTGGATGTCGGTGTACAT 57.304 42.857 0.00 0.00 42.75 2.29
433 434 4.221041 TCATACTTTGGATGTCGGTGTACA 59.779 41.667 0.00 0.00 0.00 2.90
434 435 4.751060 TCATACTTTGGATGTCGGTGTAC 58.249 43.478 0.00 0.00 0.00 2.90
435 436 5.408880 TTCATACTTTGGATGTCGGTGTA 57.591 39.130 0.00 0.00 0.00 2.90
436 437 3.973206 TCATACTTTGGATGTCGGTGT 57.027 42.857 0.00 0.00 0.00 4.16
484 487 1.092921 TCAAAGGTGTGTGTGGACGC 61.093 55.000 0.00 0.00 0.00 5.19
490 493 2.771943 TCTCTCCTTCAAAGGTGTGTGT 59.228 45.455 8.60 0.00 46.54 3.72
504 507 3.012518 CGGCAATGAACAAATCTCTCCT 58.987 45.455 0.00 0.00 0.00 3.69
507 510 4.012374 ACATCGGCAATGAACAAATCTCT 58.988 39.130 5.42 0.00 38.83 3.10
508 511 4.361451 ACATCGGCAATGAACAAATCTC 57.639 40.909 5.42 0.00 38.83 2.75
509 512 4.699735 TGTACATCGGCAATGAACAAATCT 59.300 37.500 5.42 0.00 38.83 2.40
510 513 4.980590 TGTACATCGGCAATGAACAAATC 58.019 39.130 5.42 0.00 38.83 2.17
511 514 5.342433 CATGTACATCGGCAATGAACAAAT 58.658 37.500 5.07 0.00 38.83 2.32
512 515 4.731720 CATGTACATCGGCAATGAACAAA 58.268 39.130 5.07 0.00 38.83 2.83
513 516 3.427368 GCATGTACATCGGCAATGAACAA 60.427 43.478 5.07 0.00 38.83 2.83
514 517 2.097304 GCATGTACATCGGCAATGAACA 59.903 45.455 5.07 0.00 38.83 3.18
515 518 2.541588 GGCATGTACATCGGCAATGAAC 60.542 50.000 17.19 0.00 38.83 3.18
516 519 1.675483 GGCATGTACATCGGCAATGAA 59.325 47.619 17.19 0.00 38.83 2.57
517 520 1.308047 GGCATGTACATCGGCAATGA 58.692 50.000 17.19 0.00 38.83 2.57
518 521 0.311790 GGGCATGTACATCGGCAATG 59.688 55.000 23.27 9.26 41.48 2.82
519 522 0.183492 AGGGCATGTACATCGGCAAT 59.817 50.000 23.27 13.97 0.00 3.56
520 523 0.034574 AAGGGCATGTACATCGGCAA 60.035 50.000 23.27 0.00 0.00 4.52
521 524 0.034574 AAAGGGCATGTACATCGGCA 60.035 50.000 23.27 0.00 0.00 5.69
522 525 1.102978 AAAAGGGCATGTACATCGGC 58.897 50.000 5.07 13.31 0.00 5.54
523 526 4.792704 GCAATAAAAGGGCATGTACATCGG 60.793 45.833 5.07 0.00 0.00 4.18
524 527 4.290155 GCAATAAAAGGGCATGTACATCG 58.710 43.478 5.07 3.26 0.00 3.84
525 528 4.202010 ACGCAATAAAAGGGCATGTACATC 60.202 41.667 5.07 1.16 0.00 3.06
526 529 3.699038 ACGCAATAAAAGGGCATGTACAT 59.301 39.130 1.41 1.41 0.00 2.29
527 530 3.085533 ACGCAATAAAAGGGCATGTACA 58.914 40.909 0.00 0.00 0.00 2.90
528 531 3.127895 TGACGCAATAAAAGGGCATGTAC 59.872 43.478 0.00 0.00 0.00 2.90
529 532 3.348119 TGACGCAATAAAAGGGCATGTA 58.652 40.909 0.00 0.00 0.00 2.29
530 533 2.166829 TGACGCAATAAAAGGGCATGT 58.833 42.857 0.00 0.00 0.00 3.21
531 534 2.937469 TGACGCAATAAAAGGGCATG 57.063 45.000 0.00 0.00 0.00 4.06
532 535 3.006323 TGTTTGACGCAATAAAAGGGCAT 59.994 39.130 0.00 0.00 0.00 4.40
533 536 2.362397 TGTTTGACGCAATAAAAGGGCA 59.638 40.909 0.00 0.00 0.00 5.36
534 537 3.019933 TGTTTGACGCAATAAAAGGGC 57.980 42.857 0.00 0.00 0.00 5.19
535 538 5.059404 AGATGTTTGACGCAATAAAAGGG 57.941 39.130 0.00 0.00 0.00 3.95
536 539 6.640499 TCAAAGATGTTTGACGCAATAAAAGG 59.360 34.615 13.63 0.00 45.82 3.11
537 540 7.148918 CCTCAAAGATGTTTGACGCAATAAAAG 60.149 37.037 13.63 1.26 45.82 2.27
538 541 6.640499 CCTCAAAGATGTTTGACGCAATAAAA 59.360 34.615 13.63 0.00 45.82 1.52
539 542 6.148948 CCTCAAAGATGTTTGACGCAATAAA 58.851 36.000 13.63 0.00 45.82 1.40
540 543 5.335583 CCCTCAAAGATGTTTGACGCAATAA 60.336 40.000 13.63 0.00 45.82 1.40
541 544 4.155826 CCCTCAAAGATGTTTGACGCAATA 59.844 41.667 13.63 0.00 45.82 1.90
542 545 3.057315 CCCTCAAAGATGTTTGACGCAAT 60.057 43.478 13.63 0.00 45.82 3.56
543 546 2.293122 CCCTCAAAGATGTTTGACGCAA 59.707 45.455 13.63 0.00 45.82 4.85
544 547 1.879380 CCCTCAAAGATGTTTGACGCA 59.121 47.619 13.63 0.00 45.82 5.24
545 548 1.200020 CCCCTCAAAGATGTTTGACGC 59.800 52.381 13.63 0.00 45.82 5.19
546 549 2.778299 TCCCCTCAAAGATGTTTGACG 58.222 47.619 13.63 10.03 45.82 4.35
547 550 4.021981 CCTTTCCCCTCAAAGATGTTTGAC 60.022 45.833 13.63 0.00 45.82 3.18
549 552 3.897505 ACCTTTCCCCTCAAAGATGTTTG 59.102 43.478 8.99 8.99 43.96 2.93
550 553 4.199002 ACCTTTCCCCTCAAAGATGTTT 57.801 40.909 0.00 0.00 35.67 2.83
551 554 3.903530 ACCTTTCCCCTCAAAGATGTT 57.096 42.857 0.00 0.00 35.67 2.71
552 555 3.897505 CAAACCTTTCCCCTCAAAGATGT 59.102 43.478 0.00 0.00 35.67 3.06
553 556 3.897505 ACAAACCTTTCCCCTCAAAGATG 59.102 43.478 0.00 0.00 35.67 2.90
554 557 4.199002 ACAAACCTTTCCCCTCAAAGAT 57.801 40.909 0.00 0.00 35.67 2.40
555 558 3.680777 ACAAACCTTTCCCCTCAAAGA 57.319 42.857 0.00 0.00 35.67 2.52
556 559 3.704061 TGAACAAACCTTTCCCCTCAAAG 59.296 43.478 0.00 0.00 33.73 2.77
557 560 3.714144 TGAACAAACCTTTCCCCTCAAA 58.286 40.909 0.00 0.00 0.00 2.69
558 561 3.390175 TGAACAAACCTTTCCCCTCAA 57.610 42.857 0.00 0.00 0.00 3.02
559 562 3.611025 ATGAACAAACCTTTCCCCTCA 57.389 42.857 0.00 0.00 0.00 3.86
560 563 3.641436 ACAATGAACAAACCTTTCCCCTC 59.359 43.478 0.00 0.00 0.00 4.30
561 564 3.387699 CACAATGAACAAACCTTTCCCCT 59.612 43.478 0.00 0.00 0.00 4.79
562 565 3.494223 CCACAATGAACAAACCTTTCCCC 60.494 47.826 0.00 0.00 0.00 4.81
563 566 3.727726 CCACAATGAACAAACCTTTCCC 58.272 45.455 0.00 0.00 0.00 3.97
564 567 3.130633 GCCACAATGAACAAACCTTTCC 58.869 45.455 0.00 0.00 0.00 3.13
565 568 4.058721 AGCCACAATGAACAAACCTTTC 57.941 40.909 0.00 0.00 0.00 2.62
566 569 4.486125 AAGCCACAATGAACAAACCTTT 57.514 36.364 0.00 0.00 0.00 3.11
608 611 4.582701 TTGGTCACAATCCAAACACATC 57.417 40.909 0.00 0.00 41.25 3.06
609 612 4.405358 ACTTTGGTCACAATCCAAACACAT 59.595 37.500 6.10 0.00 45.99 3.21
624 627 4.846779 TTTGGTAAGATGCACTTTGGTC 57.153 40.909 6.82 0.00 39.72 4.02
625 628 5.806654 ATTTTGGTAAGATGCACTTTGGT 57.193 34.783 6.82 0.00 39.72 3.67
649 652 5.491982 AGACCAATCTTTACTCATGACCAC 58.508 41.667 0.00 0.00 0.00 4.16
722 726 7.121315 AGCATGGGTAAGAAAAATGAACTAGAC 59.879 37.037 0.00 0.00 0.00 2.59
743 747 5.777850 TTATCCATGATTTGACCAGCATG 57.222 39.130 0.00 0.00 38.22 4.06
751 755 8.592529 TGAGGTTTTGATTATCCATGATTTGA 57.407 30.769 0.00 0.00 0.00 2.69
768 772 7.643569 AGCCAAAAATTTTGATTGAGGTTTT 57.356 28.000 18.98 0.00 0.00 2.43
769 773 7.041167 GCTAGCCAAAAATTTTGATTGAGGTTT 60.041 33.333 18.98 0.00 0.00 3.27
770 774 6.427853 GCTAGCCAAAAATTTTGATTGAGGTT 59.572 34.615 18.98 2.92 0.00 3.50
771 775 5.934043 GCTAGCCAAAAATTTTGATTGAGGT 59.066 36.000 18.98 10.03 0.00 3.85
772 776 5.352293 GGCTAGCCAAAAATTTTGATTGAGG 59.648 40.000 29.33 3.24 35.81 3.86
773 777 5.933463 TGGCTAGCCAAAAATTTTGATTGAG 59.067 36.000 34.27 11.20 44.12 3.02
774 778 5.862845 TGGCTAGCCAAAAATTTTGATTGA 58.137 33.333 34.27 4.42 44.12 2.57
816 820 8.374743 AGGTTAATGAAATGCAAGGTGTTTTAT 58.625 29.630 0.00 0.00 0.00 1.40
818 822 6.482973 CAGGTTAATGAAATGCAAGGTGTTTT 59.517 34.615 0.00 0.00 0.00 2.43
858 929 3.322211 TTCGTTGATGTAATCCGTGGT 57.678 42.857 0.00 0.00 44.73 4.16
878 949 9.449719 AGAATACTCTGTGGATTACGAATTTTT 57.550 29.630 0.00 0.00 0.00 1.94
894 965 3.942829 TGCCTCACCAAAGAATACTCTG 58.057 45.455 0.00 0.00 30.03 3.35
899 970 3.806949 AGGTTGCCTCACCAAAGAATA 57.193 42.857 0.09 0.00 39.62 1.75
900 971 2.629617 CAAGGTTGCCTCACCAAAGAAT 59.370 45.455 0.09 0.00 39.62 2.40
901 972 2.031120 CAAGGTTGCCTCACCAAAGAA 58.969 47.619 0.09 0.00 39.62 2.52
902 973 1.691196 CAAGGTTGCCTCACCAAAGA 58.309 50.000 0.09 0.00 39.62 2.52
903 974 0.675633 CCAAGGTTGCCTCACCAAAG 59.324 55.000 0.09 0.00 39.62 2.77
911 982 1.266178 GTTTATGCCCAAGGTTGCCT 58.734 50.000 0.00 0.00 33.87 4.75
921 992 1.001520 GGGTGTGTTTGGTTTATGCCC 59.998 52.381 0.00 0.00 0.00 5.36
943 2059 1.078356 GGGGGAGAAGGAAGAACGC 60.078 63.158 0.00 0.00 0.00 4.84
946 2062 0.178885 TTCCGGGGGAGAAGGAAGAA 60.179 55.000 0.00 0.00 38.94 2.52
960 2076 0.601558 TTTCGTGAGAGAGGTTCCGG 59.398 55.000 0.00 0.00 43.69 5.14
997 2113 2.844451 GCAACAACGCAGCCAGGAA 61.844 57.895 0.00 0.00 0.00 3.36
1097 2213 0.761323 TTCGAGTGTTGGAGGTGGGA 60.761 55.000 0.00 0.00 0.00 4.37
1125 2241 4.722700 AGTGTGGATGGGCGTGGC 62.723 66.667 0.00 0.00 0.00 5.01
1126 2242 2.034066 AAGTGTGGATGGGCGTGG 59.966 61.111 0.00 0.00 0.00 4.94
2488 3604 7.629027 AACAATCTTTTCGCAGAAATTTCTC 57.371 32.000 17.91 11.60 45.90 2.87
2524 3640 5.544948 AGAACATAGTACCCACTGTTGGTTA 59.455 40.000 9.02 0.00 42.10 2.85
2547 3663 9.610705 AGCTTCTGCATATATATTGGACAATAG 57.389 33.333 10.19 0.00 42.74 1.73
2711 3827 9.460413 TTCCCCAAATAAGAATAGATCTCCTTA 57.540 33.333 0.00 6.56 37.42 2.69
2954 4070 0.959553 TTTCTCGTTCAGCGGACTCT 59.040 50.000 0.00 0.00 41.72 3.24
2955 4071 1.997669 ATTTCTCGTTCAGCGGACTC 58.002 50.000 0.00 0.00 41.72 3.36
2978 4094 4.326278 TGAAAGCGCTGTAAATCTCTAACG 59.674 41.667 12.58 0.00 0.00 3.18
3054 4170 1.534235 ACGACCTCAGCCCTCTTGT 60.534 57.895 0.00 0.00 0.00 3.16
3134 4250 7.047891 TCAAGATGAGGTGTAACAATATGTCC 58.952 38.462 0.00 0.00 39.98 4.02
3236 4354 5.446073 GCAGATCTTACAGAAAAGGCGTAAC 60.446 44.000 0.00 0.00 0.00 2.50
3267 4385 3.495377 CCAACTTGTTGTGCCATTCATTG 59.505 43.478 11.82 0.00 0.00 2.82
3302 4420 2.562635 CTGCCTTGTCCATCTGATCAG 58.437 52.381 17.07 17.07 0.00 2.90
3303 4421 1.407851 GCTGCCTTGTCCATCTGATCA 60.408 52.381 0.00 0.00 0.00 2.92
3308 4426 1.220206 CGAGCTGCCTTGTCCATCT 59.780 57.895 0.00 0.00 0.00 2.90
3355 4473 2.711542 CTGGGGACATGTAAGTTCCAC 58.288 52.381 0.00 0.00 39.06 4.02
3391 4509 0.107312 CTGTGAAGAGCCCTCCATGG 60.107 60.000 4.97 4.97 0.00 3.66
3392 4510 0.617413 ACTGTGAAGAGCCCTCCATG 59.383 55.000 0.00 0.00 0.00 3.66
3452 4570 1.303282 GGACATTGGGGTGAGGTCC 59.697 63.158 0.00 0.00 41.00 4.46
3495 4613 3.436704 ACGTGAACATCAGGTGCTTTATG 59.563 43.478 5.03 0.00 42.99 1.90
3521 4639 0.109342 CCTCAAGTCCCAGTGCTTGT 59.891 55.000 8.31 0.00 41.83 3.16
3523 4641 0.109342 CACCTCAAGTCCCAGTGCTT 59.891 55.000 0.00 0.00 0.00 3.91
3524 4642 1.056700 ACACCTCAAGTCCCAGTGCT 61.057 55.000 0.00 0.00 31.58 4.40
3526 4644 1.140852 TGAACACCTCAAGTCCCAGTG 59.859 52.381 0.00 0.00 34.61 3.66
3527 4645 1.507140 TGAACACCTCAAGTCCCAGT 58.493 50.000 0.00 0.00 0.00 4.00
3528 4646 2.038952 TGATGAACACCTCAAGTCCCAG 59.961 50.000 0.00 0.00 37.67 4.45
3571 4712 1.302511 GCATCACTGACCCGTGGTT 60.303 57.895 0.00 0.00 35.25 3.67
3573 4714 1.003355 AAGCATCACTGACCCGTGG 60.003 57.895 0.00 0.00 35.63 4.94
3614 4755 3.529634 CGTTAACCGCTGAATGTTTGA 57.470 42.857 0.00 0.00 0.00 2.69
3626 4767 3.485216 GGTTGATCAATCTGCGTTAACCG 60.485 47.826 12.12 0.00 40.40 4.44
3627 4768 3.438781 TGGTTGATCAATCTGCGTTAACC 59.561 43.478 19.21 9.28 37.44 2.85
3628 4769 4.403453 GTGGTTGATCAATCTGCGTTAAC 58.597 43.478 19.21 4.01 0.00 2.01
3629 4770 3.124466 CGTGGTTGATCAATCTGCGTTAA 59.876 43.478 19.21 0.00 0.00 2.01
3630 4771 2.670905 CGTGGTTGATCAATCTGCGTTA 59.329 45.455 19.21 0.00 0.00 3.18
3631 4772 1.464608 CGTGGTTGATCAATCTGCGTT 59.535 47.619 19.21 0.00 0.00 4.84
3632 4773 1.078709 CGTGGTTGATCAATCTGCGT 58.921 50.000 19.21 0.00 0.00 5.24
3633 4774 0.374758 CCGTGGTTGATCAATCTGCG 59.625 55.000 19.21 20.33 0.00 5.18
3634 4775 0.734889 CCCGTGGTTGATCAATCTGC 59.265 55.000 19.21 11.11 0.00 4.26
3635 4776 2.009774 GACCCGTGGTTGATCAATCTG 58.990 52.381 19.21 11.54 35.25 2.90
3636 4777 1.628340 TGACCCGTGGTTGATCAATCT 59.372 47.619 19.21 0.00 35.25 2.40
3637 4778 2.009774 CTGACCCGTGGTTGATCAATC 58.990 52.381 12.12 12.05 35.25 2.67
3638 4779 1.351017 ACTGACCCGTGGTTGATCAAT 59.649 47.619 12.12 0.00 35.25 2.57
3639 4780 0.762418 ACTGACCCGTGGTTGATCAA 59.238 50.000 3.38 3.38 35.25 2.57
3640 4781 0.034756 CACTGACCCGTGGTTGATCA 59.965 55.000 0.00 0.00 35.25 2.92
3641 4782 0.320374 TCACTGACCCGTGGTTGATC 59.680 55.000 0.00 0.00 35.25 2.92
3642 4783 0.984230 ATCACTGACCCGTGGTTGAT 59.016 50.000 0.00 1.09 35.25 2.57
3643 4784 0.034756 CATCACTGACCCGTGGTTGA 59.965 55.000 0.00 0.00 35.25 3.18
3644 4785 1.577328 GCATCACTGACCCGTGGTTG 61.577 60.000 0.00 0.00 35.25 3.77
3645 4786 1.302511 GCATCACTGACCCGTGGTT 60.303 57.895 0.00 0.00 35.25 3.67
3646 4787 1.768684 AAGCATCACTGACCCGTGGT 61.769 55.000 0.00 0.00 39.44 4.16
3647 4788 1.003355 AAGCATCACTGACCCGTGG 60.003 57.895 0.00 0.00 35.63 4.94
3648 4789 0.320683 TCAAGCATCACTGACCCGTG 60.321 55.000 0.00 0.00 36.25 4.94
3649 4790 0.036952 CTCAAGCATCACTGACCCGT 60.037 55.000 0.00 0.00 0.00 5.28
3650 4791 0.742281 CCTCAAGCATCACTGACCCG 60.742 60.000 0.00 0.00 0.00 5.28
3651 4792 0.615331 TCCTCAAGCATCACTGACCC 59.385 55.000 0.00 0.00 0.00 4.46
3652 4793 2.479566 TTCCTCAAGCATCACTGACC 57.520 50.000 0.00 0.00 0.00 4.02
3653 4794 5.382618 AAATTTCCTCAAGCATCACTGAC 57.617 39.130 0.00 0.00 0.00 3.51
3654 4795 5.535783 TCAAAATTTCCTCAAGCATCACTGA 59.464 36.000 0.00 0.00 0.00 3.41
3655 4796 5.775686 TCAAAATTTCCTCAAGCATCACTG 58.224 37.500 0.00 0.00 0.00 3.66
3656 4797 5.047519 CCTCAAAATTTCCTCAAGCATCACT 60.048 40.000 0.00 0.00 0.00 3.41
3657 4798 5.047802 TCCTCAAAATTTCCTCAAGCATCAC 60.048 40.000 0.00 0.00 0.00 3.06
3658 4799 5.078949 TCCTCAAAATTTCCTCAAGCATCA 58.921 37.500 0.00 0.00 0.00 3.07
3659 4800 5.184671 ACTCCTCAAAATTTCCTCAAGCATC 59.815 40.000 0.00 0.00 0.00 3.91
3660 4801 5.082425 ACTCCTCAAAATTTCCTCAAGCAT 58.918 37.500 0.00 0.00 0.00 3.79
3661 4802 4.473444 ACTCCTCAAAATTTCCTCAAGCA 58.527 39.130 0.00 0.00 0.00 3.91
3662 4803 5.707764 AGTACTCCTCAAAATTTCCTCAAGC 59.292 40.000 0.00 0.00 0.00 4.01
3663 4804 6.712547 ACAGTACTCCTCAAAATTTCCTCAAG 59.287 38.462 0.00 0.00 0.00 3.02
3664 4805 6.601332 ACAGTACTCCTCAAAATTTCCTCAA 58.399 36.000 0.00 0.00 0.00 3.02
3665 4806 6.183361 TGACAGTACTCCTCAAAATTTCCTCA 60.183 38.462 0.00 0.00 0.00 3.86
3666 4807 6.231211 TGACAGTACTCCTCAAAATTTCCTC 58.769 40.000 0.00 0.00 0.00 3.71
3667 4808 6.187727 TGACAGTACTCCTCAAAATTTCCT 57.812 37.500 0.00 0.00 0.00 3.36
3668 4809 6.877611 TTGACAGTACTCCTCAAAATTTCC 57.122 37.500 9.25 0.00 0.00 3.13
3669 4810 7.703328 TGTTTGACAGTACTCCTCAAAATTTC 58.297 34.615 19.87 12.06 36.05 2.17
3670 4811 7.639113 TGTTTGACAGTACTCCTCAAAATTT 57.361 32.000 19.87 0.00 36.05 1.82
3671 4812 7.823745 ATGTTTGACAGTACTCCTCAAAATT 57.176 32.000 19.87 11.68 36.05 1.82
3672 4813 7.502226 TGAATGTTTGACAGTACTCCTCAAAAT 59.498 33.333 19.87 14.63 36.05 1.82
3673 4814 6.826231 TGAATGTTTGACAGTACTCCTCAAAA 59.174 34.615 19.87 13.56 36.05 2.44
3674 4815 6.353323 TGAATGTTTGACAGTACTCCTCAAA 58.647 36.000 16.39 16.39 32.69 2.69
3675 4816 5.924356 TGAATGTTTGACAGTACTCCTCAA 58.076 37.500 8.00 8.00 0.00 3.02
3676 4817 5.541845 CTGAATGTTTGACAGTACTCCTCA 58.458 41.667 0.00 0.00 0.00 3.86
3677 4818 4.390297 GCTGAATGTTTGACAGTACTCCTC 59.610 45.833 0.00 0.00 34.60 3.71
3678 4819 4.319177 GCTGAATGTTTGACAGTACTCCT 58.681 43.478 0.00 0.00 34.60 3.69
3679 4820 3.123621 CGCTGAATGTTTGACAGTACTCC 59.876 47.826 0.00 0.00 34.60 3.85
3680 4821 3.123621 CCGCTGAATGTTTGACAGTACTC 59.876 47.826 0.00 0.00 34.60 2.59
3681 4822 3.067106 CCGCTGAATGTTTGACAGTACT 58.933 45.455 0.00 0.00 34.60 2.73
3682 4823 2.806244 ACCGCTGAATGTTTGACAGTAC 59.194 45.455 0.00 0.00 34.60 2.73
3683 4824 3.120321 ACCGCTGAATGTTTGACAGTA 57.880 42.857 0.00 0.00 34.60 2.74
3684 4825 1.967319 ACCGCTGAATGTTTGACAGT 58.033 45.000 0.00 0.00 34.60 3.55
3685 4826 4.219033 GTTAACCGCTGAATGTTTGACAG 58.781 43.478 0.00 0.00 35.14 3.51
3686 4827 3.303461 CGTTAACCGCTGAATGTTTGACA 60.303 43.478 0.00 0.00 0.00 3.58
3687 4828 3.223157 CGTTAACCGCTGAATGTTTGAC 58.777 45.455 0.00 0.00 0.00 3.18
3688 4829 3.529634 CGTTAACCGCTGAATGTTTGA 57.470 42.857 0.00 0.00 0.00 2.69
3700 4841 3.485216 GGTTGATCAATCTGCGTTAACCG 60.485 47.826 12.12 0.00 40.40 4.44
3701 4842 3.438781 TGGTTGATCAATCTGCGTTAACC 59.561 43.478 19.21 9.28 37.44 2.85
3702 4843 4.403453 GTGGTTGATCAATCTGCGTTAAC 58.597 43.478 19.21 4.01 0.00 2.01
3703 4844 3.124466 CGTGGTTGATCAATCTGCGTTAA 59.876 43.478 19.21 0.00 0.00 2.01
3704 4845 2.670905 CGTGGTTGATCAATCTGCGTTA 59.329 45.455 19.21 0.00 0.00 3.18
3705 4846 1.464608 CGTGGTTGATCAATCTGCGTT 59.535 47.619 19.21 0.00 0.00 4.84
3706 4847 1.078709 CGTGGTTGATCAATCTGCGT 58.921 50.000 19.21 0.00 0.00 5.24
3707 4848 0.374758 CCGTGGTTGATCAATCTGCG 59.625 55.000 19.21 20.33 0.00 5.18
3708 4849 0.734889 CCCGTGGTTGATCAATCTGC 59.265 55.000 19.21 11.11 0.00 4.26
3709 4850 2.009774 GACCCGTGGTTGATCAATCTG 58.990 52.381 19.21 11.54 35.25 2.90
3710 4851 1.628340 TGACCCGTGGTTGATCAATCT 59.372 47.619 19.21 0.00 35.25 2.40
3711 4852 2.009774 CTGACCCGTGGTTGATCAATC 58.990 52.381 12.12 12.05 35.25 2.67
3712 4853 1.351017 ACTGACCCGTGGTTGATCAAT 59.649 47.619 12.12 0.00 35.25 2.57
3713 4854 0.762418 ACTGACCCGTGGTTGATCAA 59.238 50.000 3.38 3.38 35.25 2.57
3714 4855 0.034756 CACTGACCCGTGGTTGATCA 59.965 55.000 0.00 0.00 35.25 2.92
3715 4856 0.320374 TCACTGACCCGTGGTTGATC 59.680 55.000 0.00 0.00 35.25 2.92
3716 4857 0.984230 ATCACTGACCCGTGGTTGAT 59.016 50.000 0.00 1.09 35.25 2.57
3717 4858 0.034756 CATCACTGACCCGTGGTTGA 59.965 55.000 0.00 0.00 35.25 3.18
3718 4859 1.577328 GCATCACTGACCCGTGGTTG 61.577 60.000 0.00 0.00 35.25 3.77
3719 4860 1.302511 GCATCACTGACCCGTGGTT 60.303 57.895 0.00 0.00 35.25 3.67
3720 4861 1.768684 AAGCATCACTGACCCGTGGT 61.769 55.000 0.00 0.00 39.44 4.16
3721 4862 1.003355 AAGCATCACTGACCCGTGG 60.003 57.895 0.00 0.00 35.63 4.94
3722 4863 0.320683 TCAAGCATCACTGACCCGTG 60.321 55.000 0.00 0.00 36.25 4.94
3723 4864 0.036952 CTCAAGCATCACTGACCCGT 60.037 55.000 0.00 0.00 0.00 5.28
3724 4865 0.742281 CCTCAAGCATCACTGACCCG 60.742 60.000 0.00 0.00 0.00 5.28
3725 4866 0.615331 TCCTCAAGCATCACTGACCC 59.385 55.000 0.00 0.00 0.00 4.46
3726 4867 2.479566 TTCCTCAAGCATCACTGACC 57.520 50.000 0.00 0.00 0.00 4.02
3727 4868 5.382618 AAATTTCCTCAAGCATCACTGAC 57.617 39.130 0.00 0.00 0.00 3.51
3728 4869 5.535783 TCAAAATTTCCTCAAGCATCACTGA 59.464 36.000 0.00 0.00 0.00 3.41
3729 4870 5.775686 TCAAAATTTCCTCAAGCATCACTG 58.224 37.500 0.00 0.00 0.00 3.66
3730 4871 5.047519 CCTCAAAATTTCCTCAAGCATCACT 60.048 40.000 0.00 0.00 0.00 3.41
3731 4872 5.047802 TCCTCAAAATTTCCTCAAGCATCAC 60.048 40.000 0.00 0.00 0.00 3.06
3732 4873 5.078949 TCCTCAAAATTTCCTCAAGCATCA 58.921 37.500 0.00 0.00 0.00 3.07
3733 4874 5.184671 ACTCCTCAAAATTTCCTCAAGCATC 59.815 40.000 0.00 0.00 0.00 3.91
3734 4875 5.082425 ACTCCTCAAAATTTCCTCAAGCAT 58.918 37.500 0.00 0.00 0.00 3.79
3735 4876 4.473444 ACTCCTCAAAATTTCCTCAAGCA 58.527 39.130 0.00 0.00 0.00 3.91
3736 4877 5.707764 AGTACTCCTCAAAATTTCCTCAAGC 59.292 40.000 0.00 0.00 0.00 4.01
3737 4878 6.712547 ACAGTACTCCTCAAAATTTCCTCAAG 59.287 38.462 0.00 0.00 0.00 3.02
3738 4879 6.601332 ACAGTACTCCTCAAAATTTCCTCAA 58.399 36.000 0.00 0.00 0.00 3.02
3739 4880 6.183361 TGACAGTACTCCTCAAAATTTCCTCA 60.183 38.462 0.00 0.00 0.00 3.86
3740 4881 6.231211 TGACAGTACTCCTCAAAATTTCCTC 58.769 40.000 0.00 0.00 0.00 3.71
3741 4882 6.187727 TGACAGTACTCCTCAAAATTTCCT 57.812 37.500 0.00 0.00 0.00 3.36
3742 4883 6.877611 TTGACAGTACTCCTCAAAATTTCC 57.122 37.500 9.25 0.00 0.00 3.13
3743 4884 7.703328 TGTTTGACAGTACTCCTCAAAATTTC 58.297 34.615 19.87 12.06 36.05 2.17
3744 4885 7.639113 TGTTTGACAGTACTCCTCAAAATTT 57.361 32.000 19.87 0.00 36.05 1.82
3745 4886 7.823745 ATGTTTGACAGTACTCCTCAAAATT 57.176 32.000 19.87 11.68 36.05 1.82
3746 4887 7.502226 TGAATGTTTGACAGTACTCCTCAAAAT 59.498 33.333 19.87 14.63 36.05 1.82
3747 4888 6.826231 TGAATGTTTGACAGTACTCCTCAAAA 59.174 34.615 19.87 13.56 36.05 2.44
3748 4889 6.353323 TGAATGTTTGACAGTACTCCTCAAA 58.647 36.000 16.39 16.39 32.69 2.69
3749 4890 5.924356 TGAATGTTTGACAGTACTCCTCAA 58.076 37.500 8.00 8.00 0.00 3.02
3750 4891 5.541845 CTGAATGTTTGACAGTACTCCTCA 58.458 41.667 0.00 0.00 0.00 3.86
3751 4892 4.390297 GCTGAATGTTTGACAGTACTCCTC 59.610 45.833 0.00 0.00 34.60 3.71
3752 4893 4.319177 GCTGAATGTTTGACAGTACTCCT 58.681 43.478 0.00 0.00 34.60 3.69
3753 4894 3.123621 CGCTGAATGTTTGACAGTACTCC 59.876 47.826 0.00 0.00 34.60 3.85
3754 4895 3.123621 CCGCTGAATGTTTGACAGTACTC 59.876 47.826 0.00 0.00 34.60 2.59
3755 4896 3.067106 CCGCTGAATGTTTGACAGTACT 58.933 45.455 0.00 0.00 34.60 2.73
3756 4897 2.806244 ACCGCTGAATGTTTGACAGTAC 59.194 45.455 0.00 0.00 34.60 2.73
3757 4898 3.120321 ACCGCTGAATGTTTGACAGTA 57.880 42.857 0.00 0.00 34.60 2.74
3758 4899 1.967319 ACCGCTGAATGTTTGACAGT 58.033 45.000 0.00 0.00 34.60 3.55
3759 4900 4.406069 CATAACCGCTGAATGTTTGACAG 58.594 43.478 0.00 0.00 35.14 3.51
3760 4901 3.190327 CCATAACCGCTGAATGTTTGACA 59.810 43.478 0.00 0.00 0.00 3.58
3761 4902 3.427503 CCCATAACCGCTGAATGTTTGAC 60.428 47.826 0.00 0.00 0.00 3.18
3807 4948 1.768684 ATACCATGCCCCTACAGCGG 61.769 60.000 0.00 0.00 0.00 5.52
3955 5114 9.189156 TCCCATTCAGTTTATAAGAATTCCAAG 57.811 33.333 0.65 0.00 30.04 3.61
3956 5115 9.713684 ATCCCATTCAGTTTATAAGAATTCCAA 57.286 29.630 0.65 0.00 30.04 3.53
4054 5219 2.224843 ACATGTGATCAAGAACCCAGCA 60.225 45.455 0.00 0.00 0.00 4.41
4102 5267 0.343372 TCTGGGCCCTTCTGGATAGT 59.657 55.000 25.70 0.00 35.39 2.12
4119 5292 3.976015 TCCCAAGTTTTCAACCAGTTCT 58.024 40.909 0.00 0.00 0.00 3.01
4146 5319 1.133216 CAGACTCGACGATGATGGTGT 59.867 52.381 0.00 0.00 0.00 4.16
4189 5362 3.932545 TGACCATACAAACCATTGCAC 57.067 42.857 0.00 0.00 40.34 4.57
4203 5376 8.055181 ACATGATCACTTAAATACCTTGACCAT 58.945 33.333 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.