Multiple sequence alignment - TraesCS4B01G104100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G104100 chr4B 100.000 2534 0 0 1 2534 110283858 110281325 0.000000e+00 4680
1 TraesCS4B01G104100 chr4A 89.052 1160 78 23 532 1666 507587823 507588958 0.000000e+00 1393
2 TraesCS4B01G104100 chr4A 81.655 894 118 18 1653 2534 514054146 514053287 0.000000e+00 701
3 TraesCS4B01G104100 chr4A 89.620 395 37 3 1 391 587127786 587128180 1.350000e-137 499
4 TraesCS4B01G104100 chr4A 89.141 396 38 5 1 391 36561531 36561136 2.930000e-134 488
5 TraesCS4B01G104100 chr4D 89.546 727 45 17 421 1132 78795076 78794366 0.000000e+00 893
6 TraesCS4B01G104100 chr4D 91.127 417 26 4 1137 1548 78794325 78793915 2.850000e-154 555
7 TraesCS4B01G104100 chr4D 89.114 395 38 3 1 390 491698541 491698935 1.050000e-133 486
8 TraesCS4B01G104100 chr2B 83.238 877 85 29 1665 2518 776887232 776888069 0.000000e+00 749
9 TraesCS4B01G104100 chr2B 89.367 395 38 3 1 391 689161397 689161791 6.300000e-136 494
10 TraesCS4B01G104100 chr6A 83.811 593 59 8 1778 2360 287339817 287340382 1.730000e-146 529
11 TraesCS4B01G104100 chr6B 90.585 393 30 7 3 392 114855217 114854829 4.830000e-142 514
12 TraesCS4B01G104100 chr5D 89.421 397 37 3 1 392 507869954 507869558 1.750000e-136 496
13 TraesCS4B01G104100 chr3B 89.169 397 40 2 1 394 55688641 55688245 2.260000e-135 492
14 TraesCS4B01G104100 chr3B 88.693 398 41 3 1 394 55697273 55696876 1.360000e-132 483
15 TraesCS4B01G104100 chr3B 88.665 397 42 3 1 394 132398034 132397638 4.900000e-132 481
16 TraesCS4B01G104100 chr3A 81.111 360 47 10 1652 2000 572040249 572039900 4.160000e-68 268


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G104100 chr4B 110281325 110283858 2533 True 4680 4680 100.0000 1 2534 1 chr4B.!!$R1 2533
1 TraesCS4B01G104100 chr4A 507587823 507588958 1135 False 1393 1393 89.0520 532 1666 1 chr4A.!!$F1 1134
2 TraesCS4B01G104100 chr4A 514053287 514054146 859 True 701 701 81.6550 1653 2534 1 chr4A.!!$R2 881
3 TraesCS4B01G104100 chr4D 78793915 78795076 1161 True 724 893 90.3365 421 1548 2 chr4D.!!$R1 1127
4 TraesCS4B01G104100 chr2B 776887232 776888069 837 False 749 749 83.2380 1665 2518 1 chr2B.!!$F2 853
5 TraesCS4B01G104100 chr6A 287339817 287340382 565 False 529 529 83.8110 1778 2360 1 chr6A.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 409 0.107214 CCCGGTGCACAGGATACATT 60.107 55.0 34.08 0.0 41.41 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 2196 0.400213 TTTGGGACTGTCCATTCGCT 59.6 50.0 26.94 0.0 38.64 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.650369 GGTCGTCCGTTGCACATT 58.350 55.556 0.00 0.00 0.00 2.71
29 30 1.946267 GGTCGTCCGTTGCACATTT 59.054 52.632 0.00 0.00 0.00 2.32
30 31 0.309612 GGTCGTCCGTTGCACATTTT 59.690 50.000 0.00 0.00 0.00 1.82
31 32 1.532007 GGTCGTCCGTTGCACATTTTA 59.468 47.619 0.00 0.00 0.00 1.52
32 33 2.031857 GGTCGTCCGTTGCACATTTTAA 60.032 45.455 0.00 0.00 0.00 1.52
33 34 3.548415 GGTCGTCCGTTGCACATTTTAAA 60.548 43.478 0.00 0.00 0.00 1.52
34 35 4.036352 GTCGTCCGTTGCACATTTTAAAA 58.964 39.130 2.51 2.51 0.00 1.52
35 36 4.677832 GTCGTCCGTTGCACATTTTAAAAT 59.322 37.500 7.64 7.64 0.00 1.82
73 74 2.739885 AAAATTAGCGCATTGGCACA 57.260 40.000 11.47 0.00 41.24 4.57
87 88 2.499197 TGGCACAACATCAATGTACGT 58.501 42.857 0.00 0.00 40.80 3.57
88 89 2.881513 TGGCACAACATCAATGTACGTT 59.118 40.909 0.00 0.00 40.80 3.99
89 90 3.233578 GGCACAACATCAATGTACGTTG 58.766 45.455 19.82 19.82 40.80 4.10
91 92 3.906008 GCACAACATCAATGTACGTTGTC 59.094 43.478 23.68 10.20 46.70 3.18
92 93 4.553742 GCACAACATCAATGTACGTTGTCA 60.554 41.667 23.68 9.28 46.70 3.58
93 94 4.903585 CACAACATCAATGTACGTTGTCAC 59.096 41.667 23.68 0.00 46.70 3.67
94 95 4.572795 ACAACATCAATGTACGTTGTCACA 59.427 37.500 23.68 8.29 46.70 3.58
95 96 5.065346 ACAACATCAATGTACGTTGTCACAA 59.935 36.000 23.68 7.95 46.70 3.33
96 97 5.743026 ACATCAATGTACGTTGTCACAAA 57.257 34.783 23.68 7.29 39.68 2.83
97 98 6.125327 ACATCAATGTACGTTGTCACAAAA 57.875 33.333 23.68 6.64 39.68 2.44
98 99 6.556212 ACATCAATGTACGTTGTCACAAAAA 58.444 32.000 23.68 5.97 39.68 1.94
99 100 7.199766 ACATCAATGTACGTTGTCACAAAAAT 58.800 30.769 23.68 7.85 39.68 1.82
100 101 7.704472 ACATCAATGTACGTTGTCACAAAAATT 59.296 29.630 23.68 0.00 39.68 1.82
101 102 8.538856 CATCAATGTACGTTGTCACAAAAATTT 58.461 29.630 23.68 0.00 0.00 1.82
102 103 9.737427 ATCAATGTACGTTGTCACAAAAATTTA 57.263 25.926 23.68 4.03 0.00 1.40
103 104 9.569167 TCAATGTACGTTGTCACAAAAATTTAA 57.431 25.926 23.68 0.68 0.00 1.52
107 108 9.188588 TGTACGTTGTCACAAAAATTTAAAACA 57.811 25.926 0.00 0.00 0.00 2.83
126 127 6.853279 AAACAATATTCGAAACATTGCTCG 57.147 33.333 24.65 10.49 33.82 5.03
127 128 5.794687 ACAATATTCGAAACATTGCTCGA 57.205 34.783 24.65 7.21 42.05 4.04
128 129 5.799960 ACAATATTCGAAACATTGCTCGAG 58.200 37.500 24.65 8.45 44.25 4.04
129 130 5.580691 ACAATATTCGAAACATTGCTCGAGA 59.419 36.000 24.65 0.00 44.25 4.04
130 131 6.258727 ACAATATTCGAAACATTGCTCGAGAT 59.741 34.615 24.65 0.00 44.25 2.75
131 132 7.438160 ACAATATTCGAAACATTGCTCGAGATA 59.562 33.333 24.65 2.54 44.25 1.98
132 133 5.643339 ATTCGAAACATTGCTCGAGATAC 57.357 39.130 18.75 0.00 44.25 2.24
133 134 4.104696 TCGAAACATTGCTCGAGATACA 57.895 40.909 18.75 1.12 39.07 2.29
134 135 4.490743 TCGAAACATTGCTCGAGATACAA 58.509 39.130 18.75 11.56 39.07 2.41
135 136 4.926832 TCGAAACATTGCTCGAGATACAAA 59.073 37.500 18.75 2.00 39.07 2.83
136 137 5.407084 TCGAAACATTGCTCGAGATACAAAA 59.593 36.000 18.75 0.13 39.07 2.44
137 138 6.073494 TCGAAACATTGCTCGAGATACAAAAA 60.073 34.615 18.75 0.00 39.07 1.94
138 139 6.742718 CGAAACATTGCTCGAGATACAAAAAT 59.257 34.615 18.75 0.84 37.23 1.82
139 140 7.902917 CGAAACATTGCTCGAGATACAAAAATA 59.097 33.333 18.75 0.00 37.23 1.40
140 141 9.554724 GAAACATTGCTCGAGATACAAAAATAA 57.445 29.630 18.75 0.00 0.00 1.40
141 142 8.895932 AACATTGCTCGAGATACAAAAATAAC 57.104 30.769 18.75 0.00 0.00 1.89
142 143 8.039603 ACATTGCTCGAGATACAAAAATAACA 57.960 30.769 18.75 0.00 0.00 2.41
143 144 8.511321 ACATTGCTCGAGATACAAAAATAACAA 58.489 29.630 18.75 6.18 0.00 2.83
144 145 9.340695 CATTGCTCGAGATACAAAAATAACAAA 57.659 29.630 18.75 0.00 0.00 2.83
146 147 9.906660 TTGCTCGAGATACAAAAATAACAAATT 57.093 25.926 18.75 0.00 0.00 1.82
147 148 9.906660 TGCTCGAGATACAAAAATAACAAATTT 57.093 25.926 18.75 0.00 0.00 1.82
173 174 9.719355 TGACATTGAATAGTACATAACACAAGT 57.281 29.630 0.00 0.00 0.00 3.16
176 177 9.773328 CATTGAATAGTACATAACACAAGTTGG 57.227 33.333 7.96 0.00 38.69 3.77
177 178 9.733556 ATTGAATAGTACATAACACAAGTTGGA 57.266 29.630 7.96 0.00 38.69 3.53
178 179 8.542497 TGAATAGTACATAACACAAGTTGGAC 57.458 34.615 7.96 0.00 38.69 4.02
179 180 8.372459 TGAATAGTACATAACACAAGTTGGACT 58.628 33.333 7.96 0.00 38.69 3.85
180 181 9.216117 GAATAGTACATAACACAAGTTGGACTT 57.784 33.333 7.96 0.00 39.39 3.01
181 182 8.773404 ATAGTACATAACACAAGTTGGACTTC 57.227 34.615 7.96 0.00 36.03 3.01
182 183 6.588204 AGTACATAACACAAGTTGGACTTCA 58.412 36.000 7.96 0.00 36.03 3.02
183 184 6.706270 AGTACATAACACAAGTTGGACTTCAG 59.294 38.462 7.96 0.00 36.03 3.02
184 185 5.437060 ACATAACACAAGTTGGACTTCAGT 58.563 37.500 7.96 0.00 36.03 3.41
185 186 5.885912 ACATAACACAAGTTGGACTTCAGTT 59.114 36.000 7.96 10.38 36.03 3.16
186 187 6.377146 ACATAACACAAGTTGGACTTCAGTTT 59.623 34.615 7.96 0.00 36.03 2.66
187 188 5.722021 AACACAAGTTGGACTTCAGTTTT 57.278 34.783 7.96 0.00 36.03 2.43
188 189 5.059404 ACACAAGTTGGACTTCAGTTTTG 57.941 39.130 7.96 0.00 36.03 2.44
189 190 4.082245 ACACAAGTTGGACTTCAGTTTTGG 60.082 41.667 7.96 0.00 36.03 3.28
190 191 3.119137 ACAAGTTGGACTTCAGTTTTGGC 60.119 43.478 7.96 0.00 36.03 4.52
191 192 2.031870 AGTTGGACTTCAGTTTTGGCC 58.968 47.619 0.00 0.00 0.00 5.36
192 193 1.068588 GTTGGACTTCAGTTTTGGCCC 59.931 52.381 0.00 0.00 0.00 5.80
193 194 0.260230 TGGACTTCAGTTTTGGCCCA 59.740 50.000 0.00 0.00 0.00 5.36
194 195 1.133199 TGGACTTCAGTTTTGGCCCAT 60.133 47.619 0.00 0.00 0.00 4.00
195 196 1.970640 GGACTTCAGTTTTGGCCCATT 59.029 47.619 0.00 0.00 0.00 3.16
196 197 3.161866 GGACTTCAGTTTTGGCCCATTA 58.838 45.455 0.00 0.00 0.00 1.90
197 198 3.193479 GGACTTCAGTTTTGGCCCATTAG 59.807 47.826 0.00 0.00 0.00 1.73
198 199 2.562738 ACTTCAGTTTTGGCCCATTAGC 59.437 45.455 0.00 0.00 0.00 3.09
199 200 2.300956 TCAGTTTTGGCCCATTAGCA 57.699 45.000 0.00 0.00 0.00 3.49
200 201 1.892474 TCAGTTTTGGCCCATTAGCAC 59.108 47.619 0.00 0.00 0.00 4.40
201 202 1.617850 CAGTTTTGGCCCATTAGCACA 59.382 47.619 0.00 0.00 0.00 4.57
202 203 2.234414 CAGTTTTGGCCCATTAGCACAT 59.766 45.455 0.00 0.00 0.00 3.21
203 204 2.905736 AGTTTTGGCCCATTAGCACATT 59.094 40.909 0.00 0.00 0.00 2.71
204 205 3.002102 GTTTTGGCCCATTAGCACATTG 58.998 45.455 0.00 0.00 0.00 2.82
205 206 2.228545 TTGGCCCATTAGCACATTGA 57.771 45.000 0.00 0.00 0.00 2.57
206 207 1.473258 TGGCCCATTAGCACATTGAC 58.527 50.000 0.00 0.00 0.00 3.18
207 208 0.381801 GGCCCATTAGCACATTGACG 59.618 55.000 0.00 0.00 0.00 4.35
208 209 1.094785 GCCCATTAGCACATTGACGT 58.905 50.000 0.00 0.00 0.00 4.34
209 210 1.064060 GCCCATTAGCACATTGACGTC 59.936 52.381 9.11 9.11 0.00 4.34
210 211 2.355197 CCCATTAGCACATTGACGTCA 58.645 47.619 15.76 15.76 0.00 4.35
211 212 2.746904 CCCATTAGCACATTGACGTCAA 59.253 45.455 31.41 31.41 40.51 3.18
212 213 3.190327 CCCATTAGCACATTGACGTCAAA 59.810 43.478 32.69 16.27 39.55 2.69
213 214 4.142403 CCCATTAGCACATTGACGTCAAAT 60.142 41.667 32.69 21.53 39.55 2.32
214 215 5.401550 CCATTAGCACATTGACGTCAAATT 58.598 37.500 32.69 20.14 39.55 1.82
215 216 5.863397 CCATTAGCACATTGACGTCAAATTT 59.137 36.000 32.69 15.69 39.55 1.82
216 217 6.183360 CCATTAGCACATTGACGTCAAATTTG 60.183 38.462 32.69 27.01 39.55 2.32
217 218 4.305989 AGCACATTGACGTCAAATTTGT 57.694 36.364 32.69 27.63 39.55 2.83
218 219 4.290155 AGCACATTGACGTCAAATTTGTC 58.710 39.130 32.69 22.59 39.55 3.18
219 220 4.041049 GCACATTGACGTCAAATTTGTCA 58.959 39.130 32.69 9.96 40.62 3.58
220 221 4.681025 GCACATTGACGTCAAATTTGTCAT 59.319 37.500 32.69 12.69 41.80 3.06
221 222 5.175491 GCACATTGACGTCAAATTTGTCATT 59.825 36.000 32.69 11.96 41.80 2.57
222 223 6.292274 GCACATTGACGTCAAATTTGTCATTT 60.292 34.615 32.69 11.22 41.80 2.32
223 224 7.620215 CACATTGACGTCAAATTTGTCATTTT 58.380 30.769 32.69 10.69 41.80 1.82
224 225 8.115520 CACATTGACGTCAAATTTGTCATTTTT 58.884 29.630 32.69 10.49 41.80 1.94
225 226 8.115520 ACATTGACGTCAAATTTGTCATTTTTG 58.884 29.630 32.69 22.47 41.80 2.44
226 227 7.588143 TTGACGTCAAATTTGTCATTTTTGT 57.412 28.000 27.94 4.85 41.80 2.83
227 228 8.689251 TTGACGTCAAATTTGTCATTTTTGTA 57.311 26.923 27.94 0.00 41.80 2.41
228 229 8.864069 TGACGTCAAATTTGTCATTTTTGTAT 57.136 26.923 17.62 0.00 37.69 2.29
229 230 8.963130 TGACGTCAAATTTGTCATTTTTGTATC 58.037 29.630 17.62 2.92 37.69 2.24
230 231 9.180678 GACGTCAAATTTGTCATTTTTGTATCT 57.819 29.630 17.47 0.00 33.24 1.98
231 232 9.528018 ACGTCAAATTTGTCATTTTTGTATCTT 57.472 25.926 17.47 0.00 33.24 2.40
232 233 9.782028 CGTCAAATTTGTCATTTTTGTATCTTG 57.218 29.630 17.47 0.00 33.24 3.02
236 237 9.829507 AAATTTGTCATTTTTGTATCTTGACCA 57.170 25.926 0.00 0.00 36.68 4.02
239 240 8.815141 TTGTCATTTTTGTATCTTGACCATTG 57.185 30.769 0.00 0.00 36.68 2.82
240 241 7.950512 TGTCATTTTTGTATCTTGACCATTGT 58.049 30.769 0.00 0.00 36.68 2.71
241 242 8.420222 TGTCATTTTTGTATCTTGACCATTGTT 58.580 29.630 0.00 0.00 36.68 2.83
242 243 9.260002 GTCATTTTTGTATCTTGACCATTGTTT 57.740 29.630 0.00 0.00 32.47 2.83
243 244 9.829507 TCATTTTTGTATCTTGACCATTGTTTT 57.170 25.926 0.00 0.00 0.00 2.43
244 245 9.866936 CATTTTTGTATCTTGACCATTGTTTTG 57.133 29.630 0.00 0.00 0.00 2.44
245 246 9.829507 ATTTTTGTATCTTGACCATTGTTTTGA 57.170 25.926 0.00 0.00 0.00 2.69
246 247 9.658799 TTTTTGTATCTTGACCATTGTTTTGAA 57.341 25.926 0.00 0.00 0.00 2.69
247 248 9.829507 TTTTGTATCTTGACCATTGTTTTGAAT 57.170 25.926 0.00 0.00 0.00 2.57
248 249 9.829507 TTTGTATCTTGACCATTGTTTTGAATT 57.170 25.926 0.00 0.00 0.00 2.17
249 250 9.829507 TTGTATCTTGACCATTGTTTTGAATTT 57.170 25.926 0.00 0.00 0.00 1.82
250 251 9.829507 TGTATCTTGACCATTGTTTTGAATTTT 57.170 25.926 0.00 0.00 0.00 1.82
252 253 8.961294 ATCTTGACCATTGTTTTGAATTTTGA 57.039 26.923 0.00 0.00 0.00 2.69
253 254 8.961294 TCTTGACCATTGTTTTGAATTTTGAT 57.039 26.923 0.00 0.00 0.00 2.57
254 255 9.393512 TCTTGACCATTGTTTTGAATTTTGATT 57.606 25.926 0.00 0.00 0.00 2.57
255 256 9.654417 CTTGACCATTGTTTTGAATTTTGATTC 57.346 29.630 0.00 0.00 0.00 2.52
256 257 8.728337 TGACCATTGTTTTGAATTTTGATTCA 57.272 26.923 0.00 0.00 38.64 2.57
257 258 9.170734 TGACCATTGTTTTGAATTTTGATTCAA 57.829 25.926 9.75 9.75 45.56 2.69
290 291 7.683746 TGATAACATACATTGATGTTGTGTCG 58.316 34.615 17.40 0.00 46.88 4.35
291 292 7.547370 TGATAACATACATTGATGTTGTGTCGA 59.453 33.333 17.40 0.00 46.88 4.20
292 293 6.741992 AACATACATTGATGTTGTGTCGAT 57.258 33.333 1.46 0.00 46.00 3.59
293 294 7.841915 AACATACATTGATGTTGTGTCGATA 57.158 32.000 1.46 0.00 46.00 2.92
294 295 7.841915 ACATACATTGATGTTGTGTCGATAA 57.158 32.000 1.46 0.00 41.97 1.75
295 296 8.262715 ACATACATTGATGTTGTGTCGATAAA 57.737 30.769 1.46 0.00 41.97 1.40
296 297 8.175069 ACATACATTGATGTTGTGTCGATAAAC 58.825 33.333 1.46 0.00 41.97 2.01
297 298 6.801539 ACATTGATGTTGTGTCGATAAACT 57.198 33.333 0.00 0.00 37.90 2.66
298 299 7.202016 ACATTGATGTTGTGTCGATAAACTT 57.798 32.000 0.00 0.00 37.90 2.66
299 300 7.648142 ACATTGATGTTGTGTCGATAAACTTT 58.352 30.769 0.00 0.00 37.90 2.66
300 301 8.134895 ACATTGATGTTGTGTCGATAAACTTTT 58.865 29.630 0.00 0.00 37.90 2.27
301 302 8.967218 CATTGATGTTGTGTCGATAAACTTTTT 58.033 29.630 0.00 0.00 0.00 1.94
347 348 3.484806 TGTGCAACAGGGTCCGGT 61.485 61.111 0.00 0.00 45.67 5.28
348 349 2.978010 GTGCAACAGGGTCCGGTG 60.978 66.667 0.00 0.00 36.32 4.94
349 350 4.947147 TGCAACAGGGTCCGGTGC 62.947 66.667 0.00 2.03 0.00 5.01
350 351 4.947147 GCAACAGGGTCCGGTGCA 62.947 66.667 0.00 0.00 0.00 4.57
351 352 2.978010 CAACAGGGTCCGGTGCAC 60.978 66.667 8.80 8.80 0.00 4.57
352 353 4.265056 AACAGGGTCCGGTGCACC 62.265 66.667 26.78 26.78 0.00 5.01
364 365 2.753701 TGCACCGGTAGCACCAAT 59.246 55.556 22.47 0.00 38.47 3.16
365 366 1.376683 TGCACCGGTAGCACCAATC 60.377 57.895 22.47 0.32 38.47 2.67
366 367 2.112815 GCACCGGTAGCACCAATCC 61.113 63.158 19.85 0.00 38.47 3.01
367 368 1.451387 CACCGGTAGCACCAATCCC 60.451 63.158 6.87 0.00 38.47 3.85
368 369 2.192175 CCGGTAGCACCAATCCCC 59.808 66.667 0.00 0.00 38.47 4.81
369 370 2.375345 CCGGTAGCACCAATCCCCT 61.375 63.158 0.00 0.00 38.47 4.79
370 371 1.146263 CGGTAGCACCAATCCCCTC 59.854 63.158 6.21 0.00 38.47 4.30
371 372 1.146263 GGTAGCACCAATCCCCTCG 59.854 63.158 1.01 0.00 38.42 4.63
372 373 1.146263 GTAGCACCAATCCCCTCGG 59.854 63.158 0.00 0.00 0.00 4.63
373 374 1.306654 TAGCACCAATCCCCTCGGT 60.307 57.895 0.00 0.00 0.00 4.69
375 376 2.438434 CACCAATCCCCTCGGTGC 60.438 66.667 0.00 0.00 43.43 5.01
376 377 2.933287 ACCAATCCCCTCGGTGCA 60.933 61.111 0.00 0.00 0.00 4.57
377 378 2.438434 CCAATCCCCTCGGTGCAC 60.438 66.667 8.80 8.80 0.00 4.57
378 379 2.438434 CAATCCCCTCGGTGCACC 60.438 66.667 26.78 26.78 0.00 5.01
379 380 2.933287 AATCCCCTCGGTGCACCA 60.933 61.111 34.16 20.21 35.14 4.17
380 381 3.268103 AATCCCCTCGGTGCACCAC 62.268 63.158 34.16 9.94 35.14 4.16
390 391 2.868253 GTGCACCACCTATGTTCCC 58.132 57.895 5.22 0.00 0.00 3.97
391 392 0.679960 GTGCACCACCTATGTTCCCC 60.680 60.000 5.22 0.00 0.00 4.81
392 393 1.451387 GCACCACCTATGTTCCCCG 60.451 63.158 0.00 0.00 0.00 5.73
393 394 1.223487 CACCACCTATGTTCCCCGG 59.777 63.158 0.00 0.00 0.00 5.73
394 395 1.229723 ACCACCTATGTTCCCCGGT 60.230 57.895 0.00 0.00 0.00 5.28
395 396 1.223487 CCACCTATGTTCCCCGGTG 59.777 63.158 0.00 0.00 44.98 4.94
396 397 1.451387 CACCTATGTTCCCCGGTGC 60.451 63.158 0.00 0.00 40.27 5.01
397 398 1.921346 ACCTATGTTCCCCGGTGCA 60.921 57.895 0.00 0.00 0.00 4.57
398 399 1.451387 CCTATGTTCCCCGGTGCAC 60.451 63.158 8.80 8.80 0.00 4.57
399 400 1.298340 CTATGTTCCCCGGTGCACA 59.702 57.895 20.43 0.00 0.00 4.57
400 401 0.744414 CTATGTTCCCCGGTGCACAG 60.744 60.000 20.43 15.33 0.00 3.66
401 402 2.191786 TATGTTCCCCGGTGCACAGG 62.192 60.000 27.10 27.10 0.00 4.00
402 403 3.948719 GTTCCCCGGTGCACAGGA 61.949 66.667 34.08 24.68 32.68 3.86
403 404 2.933287 TTCCCCGGTGCACAGGAT 60.933 61.111 34.08 0.00 32.68 3.24
404 405 1.613928 TTCCCCGGTGCACAGGATA 60.614 57.895 34.08 19.71 32.68 2.59
405 406 1.906105 TTCCCCGGTGCACAGGATAC 61.906 60.000 34.08 8.02 32.68 2.24
406 407 2.665089 CCCCGGTGCACAGGATACA 61.665 63.158 34.08 0.00 41.41 2.29
407 408 1.526887 CCCGGTGCACAGGATACAT 59.473 57.895 34.08 0.00 41.41 2.29
408 409 0.107214 CCCGGTGCACAGGATACATT 60.107 55.000 34.08 0.00 41.41 2.71
409 410 1.299541 CCGGTGCACAGGATACATTC 58.700 55.000 29.69 1.04 41.41 2.67
410 411 1.134401 CCGGTGCACAGGATACATTCT 60.134 52.381 29.69 0.00 41.41 2.40
411 412 2.205074 CGGTGCACAGGATACATTCTC 58.795 52.381 20.43 0.00 41.41 2.87
412 413 2.418609 CGGTGCACAGGATACATTCTCA 60.419 50.000 20.43 0.00 41.41 3.27
413 414 3.201290 GGTGCACAGGATACATTCTCAG 58.799 50.000 20.43 0.00 41.41 3.35
414 415 3.369892 GGTGCACAGGATACATTCTCAGT 60.370 47.826 20.43 0.00 41.41 3.41
415 416 4.256920 GTGCACAGGATACATTCTCAGTT 58.743 43.478 13.17 0.00 41.41 3.16
416 417 4.697352 GTGCACAGGATACATTCTCAGTTT 59.303 41.667 13.17 0.00 41.41 2.66
417 418 4.937620 TGCACAGGATACATTCTCAGTTTC 59.062 41.667 0.00 0.00 41.41 2.78
418 419 5.181748 GCACAGGATACATTCTCAGTTTCT 58.818 41.667 0.00 0.00 41.41 2.52
419 420 5.645497 GCACAGGATACATTCTCAGTTTCTT 59.355 40.000 0.00 0.00 41.41 2.52
444 445 6.772716 TGAGATTGTCTAAGAAAAAGTGGCTT 59.227 34.615 0.00 0.00 0.00 4.35
446 447 5.514274 TTGTCTAAGAAAAAGTGGCTTGG 57.486 39.130 0.00 0.00 0.00 3.61
451 452 7.122948 TGTCTAAGAAAAAGTGGCTTGGTTTTA 59.877 33.333 0.00 0.00 0.00 1.52
452 453 7.434307 GTCTAAGAAAAAGTGGCTTGGTTTTAC 59.566 37.037 0.00 0.00 0.00 2.01
453 454 5.018539 AGAAAAAGTGGCTTGGTTTTACC 57.981 39.130 0.00 0.00 39.22 2.85
454 455 4.714802 AGAAAAAGTGGCTTGGTTTTACCT 59.285 37.500 0.00 0.00 39.58 3.08
497 498 6.848451 TGTTTTTCTAACTCCATAAATCGCC 58.152 36.000 0.00 0.00 0.00 5.54
499 500 3.380479 TCTAACTCCATAAATCGCCGG 57.620 47.619 0.00 0.00 0.00 6.13
501 502 2.930826 AACTCCATAAATCGCCGGAT 57.069 45.000 5.05 0.00 0.00 4.18
518 519 2.346847 CGGATCTCAAGAGAAAACGCTG 59.653 50.000 3.59 0.00 41.36 5.18
520 521 2.169832 TCTCAAGAGAAAACGCTGGG 57.830 50.000 0.00 0.00 33.91 4.45
530 531 3.591254 AACGCTGGGAGGTTCTCGC 62.591 63.158 0.00 5.23 42.60 5.03
569 577 0.635231 CGACATGATCACACGTCACG 59.365 55.000 17.31 0.00 38.86 4.35
606 614 4.178255 CTCGTAACGTGCGCGCAG 62.178 66.667 37.44 28.68 42.83 5.18
626 635 3.039588 GAGCGGCCGTTCGAACAA 61.040 61.111 26.44 0.00 0.00 2.83
752 761 2.134287 AGCCACTCACACGTGTCCT 61.134 57.895 20.49 5.52 33.07 3.85
754 763 1.371758 CCACTCACACGTGTCCTCG 60.372 63.158 20.49 7.92 33.07 4.63
768 777 4.180946 CTCGGTCGCTCCTCCACG 62.181 72.222 0.00 0.00 0.00 4.94
842 851 1.384989 TTTCGTTTCCTTTGGCCGCA 61.385 50.000 0.00 0.00 0.00 5.69
845 854 3.669344 TTTCCTTTGGCCGCAGCG 61.669 61.111 8.18 8.18 41.24 5.18
928 937 0.926155 CATCACCAGATCGAAGCGTG 59.074 55.000 0.00 0.00 30.20 5.34
965 980 2.223735 CGCAAGAGACGTGTGGGTATAT 60.224 50.000 0.00 0.00 43.02 0.86
966 981 3.004002 CGCAAGAGACGTGTGGGTATATA 59.996 47.826 0.00 0.00 43.02 0.86
979 994 5.098211 GTGGGTATATAGTAAATCGTCGCC 58.902 45.833 0.00 0.00 0.00 5.54
987 1002 0.523125 TAAATCGTCGCCCGTACGTG 60.523 55.000 15.21 3.42 41.08 4.49
1006 1021 0.317103 GACGTGACGATCGATGAGGG 60.317 60.000 24.34 8.01 0.00 4.30
1107 1126 0.539438 CCAGGGTAAGCAAAGCACCA 60.539 55.000 1.68 0.00 33.78 4.17
1132 1151 1.107114 TCCAGCTCGTCAGATCTTCC 58.893 55.000 0.00 0.00 0.00 3.46
1133 1152 1.110442 CCAGCTCGTCAGATCTTCCT 58.890 55.000 0.00 0.00 0.00 3.36
1134 1153 1.202394 CCAGCTCGTCAGATCTTCCTG 60.202 57.143 0.00 0.00 35.55 3.86
1143 1198 1.391485 CAGATCTTCCTGCGTCGTTTG 59.609 52.381 0.00 0.00 0.00 2.93
1144 1199 0.721718 GATCTTCCTGCGTCGTTTGG 59.278 55.000 0.00 0.00 0.00 3.28
1149 1204 1.161563 TCCTGCGTCGTTTGGTTTCC 61.162 55.000 0.00 0.00 0.00 3.13
1156 1211 3.304190 GCGTCGTTTGGTTTCCTTTACAT 60.304 43.478 0.00 0.00 0.00 2.29
1157 1212 4.215965 CGTCGTTTGGTTTCCTTTACATG 58.784 43.478 0.00 0.00 0.00 3.21
1159 1214 5.209977 GTCGTTTGGTTTCCTTTACATGTC 58.790 41.667 0.00 0.00 0.00 3.06
1160 1215 4.882427 TCGTTTGGTTTCCTTTACATGTCA 59.118 37.500 0.00 0.00 0.00 3.58
1161 1216 5.357314 TCGTTTGGTTTCCTTTACATGTCAA 59.643 36.000 0.00 0.00 0.00 3.18
1162 1217 6.039941 TCGTTTGGTTTCCTTTACATGTCAAT 59.960 34.615 0.00 0.00 0.00 2.57
1163 1218 6.362283 CGTTTGGTTTCCTTTACATGTCAATC 59.638 38.462 0.00 0.00 0.00 2.67
1249 1306 2.093869 CCCGAATCTTCACCGAGGTAAA 60.094 50.000 0.00 0.00 0.00 2.01
1269 1326 6.253942 GGTAAACGTGCATTTTACTTTGTTGT 59.746 34.615 22.98 0.00 38.79 3.32
1274 1331 4.439776 GTGCATTTTACTTTGTTGTCGGTC 59.560 41.667 0.00 0.00 0.00 4.79
1282 1339 4.457466 ACTTTGTTGTCGGTCATAAACCT 58.543 39.130 0.00 0.00 46.87 3.50
1320 1377 2.409012 TCGCTCGTGATTTTTGTAGCA 58.591 42.857 0.00 0.00 0.00 3.49
1321 1378 3.000041 TCGCTCGTGATTTTTGTAGCAT 59.000 40.909 0.00 0.00 0.00 3.79
1322 1379 4.177783 TCGCTCGTGATTTTTGTAGCATA 58.822 39.130 0.00 0.00 0.00 3.14
1323 1380 4.808895 TCGCTCGTGATTTTTGTAGCATAT 59.191 37.500 0.00 0.00 0.00 1.78
1324 1381 5.980715 TCGCTCGTGATTTTTGTAGCATATA 59.019 36.000 0.00 0.00 0.00 0.86
1325 1382 6.477360 TCGCTCGTGATTTTTGTAGCATATAA 59.523 34.615 0.00 0.00 0.00 0.98
1444 1507 1.017701 GGACGTGTTTGATCCGGACC 61.018 60.000 6.12 0.00 0.00 4.46
1552 1615 8.097662 CCTTCTAATTACCTTCACATCCCTATC 58.902 40.741 0.00 0.00 0.00 2.08
1553 1616 7.228314 TCTAATTACCTTCACATCCCTATCG 57.772 40.000 0.00 0.00 0.00 2.92
1558 1621 5.174037 ACCTTCACATCCCTATCGAAAAA 57.826 39.130 0.00 0.00 0.00 1.94
1564 1627 4.511826 CACATCCCTATCGAAAAAGCTACC 59.488 45.833 0.00 0.00 0.00 3.18
1602 1665 0.404426 GGGGGTCTACAGTTTTGCCT 59.596 55.000 0.00 0.00 0.00 4.75
1610 1673 5.122396 GGTCTACAGTTTTGCCTGTTCATAG 59.878 44.000 0.00 0.00 42.99 2.23
1611 1674 5.932303 GTCTACAGTTTTGCCTGTTCATAGA 59.068 40.000 0.00 0.00 42.99 1.98
1612 1675 6.091441 GTCTACAGTTTTGCCTGTTCATAGAG 59.909 42.308 0.00 0.00 42.99 2.43
1613 1676 3.503748 ACAGTTTTGCCTGTTCATAGAGC 59.496 43.478 0.00 0.00 42.99 4.09
1618 1681 5.376854 TTTGCCTGTTCATAGAGCTTTTC 57.623 39.130 0.00 0.00 0.00 2.29
1645 1710 5.557891 AACGTAGTATTAGCGAGTTCTGT 57.442 39.130 0.00 0.00 45.00 3.41
1659 1724 3.594134 AGTTCTGTTGCAGCAGTAGATC 58.406 45.455 27.01 14.78 37.70 2.75
1728 1794 8.638565 CCGTAACTTTCATTCAAATAAAGCAAG 58.361 33.333 0.00 0.00 34.31 4.01
1729 1795 9.180678 CGTAACTTTCATTCAAATAAAGCAAGT 57.819 29.630 0.00 0.00 34.31 3.16
1751 1817 9.092876 CAAGTTTATGTACAGCCAAAAGAAAAA 57.907 29.630 0.33 0.00 0.00 1.94
1776 1851 8.422577 AAAATAAAAACAGAAGCCACCTATCT 57.577 30.769 0.00 0.00 0.00 1.98
1816 1891 9.103861 GGTATATCCATGAAGAATTAAGCTAGC 57.896 37.037 6.62 6.62 35.97 3.42
1832 1907 6.739331 AAGCTAGCTTATCTGTAATCCAGT 57.261 37.500 28.36 0.00 37.19 4.00
1837 1912 6.168270 AGCTTATCTGTAATCCAGTCCTTC 57.832 41.667 0.00 0.00 42.19 3.46
1864 1948 2.666317 TCTCTGTGTTCTCTCACCACA 58.334 47.619 0.00 0.00 37.51 4.17
1880 1964 5.491070 TCACCACAATCATCTTAAGGTCAG 58.509 41.667 1.85 0.00 0.00 3.51
1908 1992 4.638304 AGCAAAATTCTTCAAGCTTGCAT 58.362 34.783 21.99 7.87 41.20 3.96
1910 1994 6.403878 AGCAAAATTCTTCAAGCTTGCATAT 58.596 32.000 21.99 9.12 41.20 1.78
1937 2021 7.729116 AGGATTTTGAGCTTTGAAGATTTTGA 58.271 30.769 0.00 0.00 0.00 2.69
1987 2071 5.190677 CAGCCCATGATGATTATGCTCATA 58.809 41.667 0.00 0.00 36.01 2.15
2005 2089 7.766219 GCTCATAGCAAATTGTTTGATGATT 57.234 32.000 6.61 0.00 43.26 2.57
2006 2090 8.861033 GCTCATAGCAAATTGTTTGATGATTA 57.139 30.769 6.61 0.00 43.26 1.75
2007 2091 9.472361 GCTCATAGCAAATTGTTTGATGATTAT 57.528 29.630 6.61 0.00 43.26 1.28
2009 2093 9.251792 TCATAGCAAATTGTTTGATGATTATGC 57.748 29.630 6.61 0.00 43.26 3.14
2010 2094 9.256477 CATAGCAAATTGTTTGATGATTATGCT 57.744 29.630 6.61 0.00 43.26 3.79
2011 2095 7.766219 AGCAAATTGTTTGATGATTATGCTC 57.234 32.000 6.61 0.00 43.26 4.26
2012 2096 7.324935 AGCAAATTGTTTGATGATTATGCTCA 58.675 30.769 6.61 0.00 43.26 4.26
2013 2097 7.985184 AGCAAATTGTTTGATGATTATGCTCAT 59.015 29.630 6.61 0.00 43.26 2.90
2014 2098 9.251792 GCAAATTGTTTGATGATTATGCTCATA 57.748 29.630 6.61 0.00 43.26 2.15
2016 2100 9.472361 AAATTGTTTGATGATTATGCTCATAGC 57.528 29.630 0.00 0.00 42.82 2.97
2085 2169 2.280308 TAGTGCCCCTATCCCTGTTT 57.720 50.000 0.00 0.00 0.00 2.83
2112 2196 6.429078 GCACAATGAAATCCTAGCATGATAGA 59.571 38.462 19.47 6.13 0.00 1.98
2121 2205 3.194329 CCTAGCATGATAGAGCGAATGGA 59.806 47.826 19.47 0.00 35.48 3.41
2133 2217 1.818674 GCGAATGGACAGTCCCAAAAT 59.181 47.619 17.59 0.40 40.04 1.82
2144 2228 5.501156 ACAGTCCCAAAATAGATGAAGACC 58.499 41.667 0.00 0.00 0.00 3.85
2155 2239 2.035632 GATGAAGACCGGTCTCCTCAT 58.964 52.381 35.83 35.83 38.92 2.90
2187 2271 7.747799 CAGTTGCAGATTTCACAGTTATAGTTG 59.252 37.037 0.00 0.00 0.00 3.16
2213 2298 6.930722 GGCAGATGGAAATTCTTTCTCAAAAA 59.069 34.615 0.00 0.00 39.59 1.94
2241 2326 5.400066 TTCTGACATTTACTCGGTCATGA 57.600 39.130 0.00 0.00 40.44 3.07
2247 2332 7.552459 TGACATTTACTCGGTCATGAAGAATA 58.448 34.615 0.00 0.00 36.69 1.75
2249 2334 8.425577 ACATTTACTCGGTCATGAAGAATAAG 57.574 34.615 0.00 0.00 0.00 1.73
2401 2489 1.338107 TGGGTAGCACCATCTATCCG 58.662 55.000 7.49 0.00 41.67 4.18
2429 2517 1.449726 TTCAGCTGTGTGGCTTGCAG 61.450 55.000 14.67 0.00 41.00 4.41
2435 2523 1.895707 GTGTGGCTTGCAGCAGAGT 60.896 57.895 9.78 0.00 44.75 3.24
2441 2529 2.237143 TGGCTTGCAGCAGAGTAGTTAT 59.763 45.455 9.78 0.00 44.75 1.89
2445 2533 4.688413 GCTTGCAGCAGAGTAGTTATATCC 59.312 45.833 0.00 0.00 41.89 2.59
2448 2536 5.140454 TGCAGCAGAGTAGTTATATCCTGA 58.860 41.667 0.00 0.00 0.00 3.86
2482 2570 2.289945 GCTTGAATGGAGAGAGGTGTGT 60.290 50.000 0.00 0.00 0.00 3.72
2484 2572 4.563580 GCTTGAATGGAGAGAGGTGTGTAA 60.564 45.833 0.00 0.00 0.00 2.41
2511 2599 6.796785 TGTTCAGATAGATCATCCAAGTCA 57.203 37.500 0.00 0.00 33.75 3.41
2523 2611 4.344968 TCATCCAAGTCACTGAGTTTCTGA 59.655 41.667 0.00 0.00 0.00 3.27
2528 2616 5.111989 CAAGTCACTGAGTTTCTGAACTGA 58.888 41.667 0.00 0.00 45.88 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.309612 AAAATGTGCAACGGACGACC 59.690 50.000 0.00 0.00 42.39 4.79
12 13 2.953640 TAAAATGTGCAACGGACGAC 57.046 45.000 0.00 0.00 42.39 4.34
13 14 3.965292 TTTAAAATGTGCAACGGACGA 57.035 38.095 0.00 0.00 42.39 4.20
14 15 4.928919 CATTTTAAAATGTGCAACGGACG 58.071 39.130 26.14 3.18 42.39 4.79
62 63 1.656594 CATTGATGTTGTGCCAATGCG 59.343 47.619 0.00 0.00 40.13 4.73
63 64 2.690786 ACATTGATGTTGTGCCAATGC 58.309 42.857 12.51 0.00 46.53 3.56
65 66 3.505680 ACGTACATTGATGTTGTGCCAAT 59.494 39.130 1.46 0.00 41.97 3.16
66 67 2.881513 ACGTACATTGATGTTGTGCCAA 59.118 40.909 1.46 0.00 41.97 4.52
67 68 2.499197 ACGTACATTGATGTTGTGCCA 58.501 42.857 1.46 0.00 41.97 4.92
68 69 3.233578 CAACGTACATTGATGTTGTGCC 58.766 45.455 0.00 0.00 40.15 5.01
73 74 5.743026 TTGTGACAACGTACATTGATGTT 57.257 34.783 8.94 0.00 41.97 2.71
74 75 5.743026 TTTGTGACAACGTACATTGATGT 57.257 34.783 8.94 1.84 44.48 3.06
75 76 7.621832 ATTTTTGTGACAACGTACATTGATG 57.378 32.000 8.94 0.00 33.57 3.07
76 77 8.641499 AAATTTTTGTGACAACGTACATTGAT 57.359 26.923 8.94 0.00 33.57 2.57
77 78 9.569167 TTAAATTTTTGTGACAACGTACATTGA 57.431 25.926 8.94 0.00 33.57 2.57
81 82 9.188588 TGTTTTAAATTTTTGTGACAACGTACA 57.811 25.926 0.00 0.00 0.00 2.90
100 101 8.845648 CGAGCAATGTTTCGAATATTGTTTTAA 58.154 29.630 24.49 0.00 40.72 1.52
101 102 8.231161 TCGAGCAATGTTTCGAATATTGTTTTA 58.769 29.630 24.49 14.56 42.27 1.52
102 103 7.081349 TCGAGCAATGTTTCGAATATTGTTTT 58.919 30.769 24.49 16.13 42.27 2.43
103 104 6.607689 TCGAGCAATGTTTCGAATATTGTTT 58.392 32.000 24.49 17.72 42.27 2.83
104 105 6.092122 TCTCGAGCAATGTTTCGAATATTGTT 59.908 34.615 24.49 21.53 44.25 2.83
105 106 5.580691 TCTCGAGCAATGTTTCGAATATTGT 59.419 36.000 24.49 16.57 44.25 2.71
106 107 6.036246 TCTCGAGCAATGTTTCGAATATTG 57.964 37.500 21.87 21.87 44.25 1.90
107 108 6.851222 ATCTCGAGCAATGTTTCGAATATT 57.149 33.333 7.81 0.26 44.25 1.28
108 109 6.923508 TGTATCTCGAGCAATGTTTCGAATAT 59.076 34.615 7.81 10.52 44.25 1.28
109 110 6.270064 TGTATCTCGAGCAATGTTTCGAATA 58.730 36.000 7.81 9.77 44.25 1.75
110 111 5.109210 TGTATCTCGAGCAATGTTTCGAAT 58.891 37.500 7.81 10.43 44.25 3.34
111 112 4.490743 TGTATCTCGAGCAATGTTTCGAA 58.509 39.130 7.81 0.00 44.25 3.71
112 113 4.104696 TGTATCTCGAGCAATGTTTCGA 57.895 40.909 7.81 10.47 42.91 3.71
113 114 4.840401 TTGTATCTCGAGCAATGTTTCG 57.160 40.909 7.81 3.56 38.13 3.46
114 115 9.554724 TTATTTTTGTATCTCGAGCAATGTTTC 57.445 29.630 7.81 0.00 0.00 2.78
115 116 9.341899 GTTATTTTTGTATCTCGAGCAATGTTT 57.658 29.630 7.81 0.00 0.00 2.83
116 117 8.511321 TGTTATTTTTGTATCTCGAGCAATGTT 58.489 29.630 7.81 0.00 0.00 2.71
117 118 8.039603 TGTTATTTTTGTATCTCGAGCAATGT 57.960 30.769 7.81 0.00 0.00 2.71
118 119 8.894409 TTGTTATTTTTGTATCTCGAGCAATG 57.106 30.769 7.81 0.00 0.00 2.82
120 121 9.906660 AATTTGTTATTTTTGTATCTCGAGCAA 57.093 25.926 7.81 3.53 0.00 3.91
121 122 9.906660 AAATTTGTTATTTTTGTATCTCGAGCA 57.093 25.926 7.81 0.00 0.00 4.26
147 148 9.719355 ACTTGTGTTATGTACTATTCAATGTCA 57.281 29.630 0.00 0.00 0.00 3.58
150 151 9.773328 CCAACTTGTGTTATGTACTATTCAATG 57.227 33.333 0.00 0.00 34.60 2.82
151 152 9.733556 TCCAACTTGTGTTATGTACTATTCAAT 57.266 29.630 0.00 0.00 34.60 2.57
152 153 8.995220 GTCCAACTTGTGTTATGTACTATTCAA 58.005 33.333 0.00 0.00 34.60 2.69
153 154 8.372459 AGTCCAACTTGTGTTATGTACTATTCA 58.628 33.333 0.00 0.00 34.60 2.57
154 155 8.773404 AGTCCAACTTGTGTTATGTACTATTC 57.227 34.615 0.00 0.00 34.60 1.75
155 156 9.216117 GAAGTCCAACTTGTGTTATGTACTATT 57.784 33.333 0.00 0.00 38.80 1.73
156 157 8.372459 TGAAGTCCAACTTGTGTTATGTACTAT 58.628 33.333 0.00 0.00 38.80 2.12
157 158 7.728148 TGAAGTCCAACTTGTGTTATGTACTA 58.272 34.615 0.00 0.00 38.80 1.82
158 159 6.588204 TGAAGTCCAACTTGTGTTATGTACT 58.412 36.000 0.00 0.00 38.80 2.73
159 160 6.482308 ACTGAAGTCCAACTTGTGTTATGTAC 59.518 38.462 0.00 0.00 38.80 2.90
160 161 6.588204 ACTGAAGTCCAACTTGTGTTATGTA 58.412 36.000 0.00 0.00 38.80 2.29
161 162 5.437060 ACTGAAGTCCAACTTGTGTTATGT 58.563 37.500 0.00 0.00 38.80 2.29
162 163 6.377327 AACTGAAGTCCAACTTGTGTTATG 57.623 37.500 0.00 0.00 38.80 1.90
163 164 7.257722 CAAAACTGAAGTCCAACTTGTGTTAT 58.742 34.615 0.00 0.00 38.80 1.89
164 165 6.349777 CCAAAACTGAAGTCCAACTTGTGTTA 60.350 38.462 0.00 0.00 38.80 2.41
165 166 5.469479 CAAAACTGAAGTCCAACTTGTGTT 58.531 37.500 0.00 0.21 38.80 3.32
166 167 4.082245 CCAAAACTGAAGTCCAACTTGTGT 60.082 41.667 0.00 0.00 38.80 3.72
167 168 4.423732 CCAAAACTGAAGTCCAACTTGTG 58.576 43.478 0.00 0.00 38.80 3.33
168 169 3.119137 GCCAAAACTGAAGTCCAACTTGT 60.119 43.478 0.00 0.00 38.80 3.16
169 170 3.447742 GCCAAAACTGAAGTCCAACTTG 58.552 45.455 0.00 0.00 38.80 3.16
170 171 2.430694 GGCCAAAACTGAAGTCCAACTT 59.569 45.455 0.00 0.00 41.95 2.66
171 172 2.031870 GGCCAAAACTGAAGTCCAACT 58.968 47.619 0.00 0.00 0.00 3.16
172 173 1.068588 GGGCCAAAACTGAAGTCCAAC 59.931 52.381 4.39 0.00 0.00 3.77
173 174 1.342474 TGGGCCAAAACTGAAGTCCAA 60.342 47.619 2.13 0.00 0.00 3.53
174 175 0.260230 TGGGCCAAAACTGAAGTCCA 59.740 50.000 2.13 0.00 0.00 4.02
175 176 1.632589 ATGGGCCAAAACTGAAGTCC 58.367 50.000 11.89 0.00 0.00 3.85
176 177 3.367395 GCTAATGGGCCAAAACTGAAGTC 60.367 47.826 11.89 0.00 0.00 3.01
177 178 2.562738 GCTAATGGGCCAAAACTGAAGT 59.437 45.455 11.89 0.00 0.00 3.01
178 179 2.562298 TGCTAATGGGCCAAAACTGAAG 59.438 45.455 11.89 1.50 0.00 3.02
179 180 2.298729 GTGCTAATGGGCCAAAACTGAA 59.701 45.455 11.89 0.00 0.00 3.02
180 181 1.892474 GTGCTAATGGGCCAAAACTGA 59.108 47.619 11.89 0.00 0.00 3.41
181 182 1.617850 TGTGCTAATGGGCCAAAACTG 59.382 47.619 11.89 0.24 0.00 3.16
182 183 2.008242 TGTGCTAATGGGCCAAAACT 57.992 45.000 11.89 0.00 0.00 2.66
183 184 3.002102 CAATGTGCTAATGGGCCAAAAC 58.998 45.455 11.89 5.38 0.00 2.43
184 185 2.902486 TCAATGTGCTAATGGGCCAAAA 59.098 40.909 11.89 0.00 0.00 2.44
185 186 2.233431 GTCAATGTGCTAATGGGCCAAA 59.767 45.455 11.89 0.00 0.00 3.28
186 187 1.824230 GTCAATGTGCTAATGGGCCAA 59.176 47.619 11.89 0.00 0.00 4.52
187 188 1.473258 GTCAATGTGCTAATGGGCCA 58.527 50.000 9.61 9.61 0.00 5.36
188 189 0.381801 CGTCAATGTGCTAATGGGCC 59.618 55.000 0.00 0.00 0.00 5.80
189 190 1.064060 GACGTCAATGTGCTAATGGGC 59.936 52.381 11.55 0.00 0.00 5.36
190 191 2.355197 TGACGTCAATGTGCTAATGGG 58.645 47.619 17.62 0.00 0.00 4.00
191 192 4.418013 TTTGACGTCAATGTGCTAATGG 57.582 40.909 30.10 0.00 35.55 3.16
192 193 6.363088 ACAAATTTGACGTCAATGTGCTAATG 59.637 34.615 30.10 20.33 35.55 1.90
193 194 6.446318 ACAAATTTGACGTCAATGTGCTAAT 58.554 32.000 30.10 16.42 35.55 1.73
194 195 5.826586 ACAAATTTGACGTCAATGTGCTAA 58.173 33.333 30.10 14.83 35.55 3.09
195 196 5.008118 TGACAAATTTGACGTCAATGTGCTA 59.992 36.000 30.50 17.87 36.75 3.49
196 197 4.202000 TGACAAATTTGACGTCAATGTGCT 60.202 37.500 30.50 18.78 36.75 4.40
197 198 4.041049 TGACAAATTTGACGTCAATGTGC 58.959 39.130 30.50 22.87 36.75 4.57
198 199 6.752335 AATGACAAATTTGACGTCAATGTG 57.248 33.333 30.50 26.96 42.53 3.21
199 200 7.769272 AAAATGACAAATTTGACGTCAATGT 57.231 28.000 30.10 28.59 42.53 2.71
200 201 8.115520 ACAAAAATGACAAATTTGACGTCAATG 58.884 29.630 30.10 25.85 42.53 2.82
201 202 8.195617 ACAAAAATGACAAATTTGACGTCAAT 57.804 26.923 30.10 16.04 42.53 2.57
202 203 7.588143 ACAAAAATGACAAATTTGACGTCAA 57.412 28.000 26.53 26.53 42.53 3.18
203 204 8.864069 ATACAAAAATGACAAATTTGACGTCA 57.136 26.923 24.64 15.76 43.35 4.35
204 205 9.180678 AGATACAAAAATGACAAATTTGACGTC 57.819 29.630 24.64 9.11 37.46 4.34
205 206 9.528018 AAGATACAAAAATGACAAATTTGACGT 57.472 25.926 24.64 16.52 37.46 4.34
206 207 9.782028 CAAGATACAAAAATGACAAATTTGACG 57.218 29.630 24.64 7.21 37.46 4.35
210 211 9.829507 TGGTCAAGATACAAAAATGACAAATTT 57.170 25.926 6.55 0.00 41.60 1.82
213 214 9.258826 CAATGGTCAAGATACAAAAATGACAAA 57.741 29.630 6.55 0.00 41.60 2.83
214 215 8.420222 ACAATGGTCAAGATACAAAAATGACAA 58.580 29.630 6.55 0.00 41.60 3.18
215 216 7.950512 ACAATGGTCAAGATACAAAAATGACA 58.049 30.769 6.55 0.00 41.60 3.58
216 217 8.816640 AACAATGGTCAAGATACAAAAATGAC 57.183 30.769 0.00 0.00 39.65 3.06
217 218 9.829507 AAAACAATGGTCAAGATACAAAAATGA 57.170 25.926 0.00 0.00 0.00 2.57
218 219 9.866936 CAAAACAATGGTCAAGATACAAAAATG 57.133 29.630 0.00 0.00 0.00 2.32
219 220 9.829507 TCAAAACAATGGTCAAGATACAAAAAT 57.170 25.926 0.00 0.00 0.00 1.82
220 221 9.658799 TTCAAAACAATGGTCAAGATACAAAAA 57.341 25.926 0.00 0.00 0.00 1.94
221 222 9.829507 ATTCAAAACAATGGTCAAGATACAAAA 57.170 25.926 0.00 0.00 0.00 2.44
222 223 9.829507 AATTCAAAACAATGGTCAAGATACAAA 57.170 25.926 0.00 0.00 0.00 2.83
223 224 9.829507 AAATTCAAAACAATGGTCAAGATACAA 57.170 25.926 0.00 0.00 0.00 2.41
224 225 9.829507 AAAATTCAAAACAATGGTCAAGATACA 57.170 25.926 0.00 0.00 0.00 2.29
227 228 8.961294 TCAAAATTCAAAACAATGGTCAAGAT 57.039 26.923 0.00 0.00 0.00 2.40
228 229 8.961294 ATCAAAATTCAAAACAATGGTCAAGA 57.039 26.923 0.00 0.00 0.00 3.02
229 230 9.654417 GAATCAAAATTCAAAACAATGGTCAAG 57.346 29.630 0.00 0.00 40.90 3.02
230 231 9.170734 TGAATCAAAATTCAAAACAATGGTCAA 57.829 25.926 0.00 0.00 46.41 3.18
231 232 8.728337 TGAATCAAAATTCAAAACAATGGTCA 57.272 26.923 0.00 0.00 46.41 4.02
264 265 8.337532 CGACACAACATCAATGTATGTTATCAT 58.662 33.333 11.93 0.00 45.92 2.45
265 266 7.547370 TCGACACAACATCAATGTATGTTATCA 59.453 33.333 11.93 0.00 45.92 2.15
266 267 7.905126 TCGACACAACATCAATGTATGTTATC 58.095 34.615 11.93 9.67 45.92 1.75
267 268 7.841915 TCGACACAACATCAATGTATGTTAT 57.158 32.000 11.93 0.00 45.92 1.89
268 269 7.841915 ATCGACACAACATCAATGTATGTTA 57.158 32.000 11.93 6.64 45.92 2.41
270 271 7.841915 TTATCGACACAACATCAATGTATGT 57.158 32.000 10.94 10.94 40.80 2.29
271 272 8.390354 AGTTTATCGACACAACATCAATGTATG 58.610 33.333 0.00 1.54 40.80 2.39
272 273 8.492673 AGTTTATCGACACAACATCAATGTAT 57.507 30.769 0.00 0.00 40.80 2.29
273 274 7.899178 AGTTTATCGACACAACATCAATGTA 57.101 32.000 0.00 0.00 40.80 2.29
274 275 6.801539 AGTTTATCGACACAACATCAATGT 57.198 33.333 0.00 0.00 44.20 2.71
275 276 8.506140 AAAAGTTTATCGACACAACATCAATG 57.494 30.769 0.00 0.00 0.00 2.82
323 324 3.243569 CGGACCCTGTTGCACATTAAAAA 60.244 43.478 0.00 0.00 0.00 1.94
324 325 2.294791 CGGACCCTGTTGCACATTAAAA 59.705 45.455 0.00 0.00 0.00 1.52
325 326 1.883275 CGGACCCTGTTGCACATTAAA 59.117 47.619 0.00 0.00 0.00 1.52
326 327 1.529226 CGGACCCTGTTGCACATTAA 58.471 50.000 0.00 0.00 0.00 1.40
327 328 0.322098 CCGGACCCTGTTGCACATTA 60.322 55.000 0.00 0.00 0.00 1.90
328 329 1.603455 CCGGACCCTGTTGCACATT 60.603 57.895 0.00 0.00 0.00 2.71
329 330 2.034066 CCGGACCCTGTTGCACAT 59.966 61.111 0.00 0.00 0.00 3.21
330 331 3.484806 ACCGGACCCTGTTGCACA 61.485 61.111 9.46 0.00 0.00 4.57
331 332 2.978010 CACCGGACCCTGTTGCAC 60.978 66.667 9.46 0.00 0.00 4.57
332 333 4.947147 GCACCGGACCCTGTTGCA 62.947 66.667 9.46 0.00 0.00 4.08
333 334 4.947147 TGCACCGGACCCTGTTGC 62.947 66.667 9.46 6.16 0.00 4.17
334 335 2.978010 GTGCACCGGACCCTGTTG 60.978 66.667 9.46 0.00 0.00 3.33
335 336 4.265056 GGTGCACCGGACCCTGTT 62.265 66.667 22.49 0.00 0.00 3.16
347 348 1.376683 GATTGGTGCTACCGGTGCA 60.377 57.895 19.93 21.51 42.58 4.57
348 349 2.112815 GGATTGGTGCTACCGGTGC 61.113 63.158 19.93 19.04 42.58 5.01
349 350 1.451387 GGGATTGGTGCTACCGGTG 60.451 63.158 19.93 8.61 42.58 4.94
350 351 2.676265 GGGGATTGGTGCTACCGGT 61.676 63.158 13.98 13.98 42.58 5.28
351 352 2.192175 GGGGATTGGTGCTACCGG 59.808 66.667 0.00 0.00 42.58 5.28
352 353 1.146263 GAGGGGATTGGTGCTACCG 59.854 63.158 0.00 0.00 42.58 4.02
353 354 1.146263 CGAGGGGATTGGTGCTACC 59.854 63.158 0.00 0.00 39.22 3.18
354 355 1.146263 CCGAGGGGATTGGTGCTAC 59.854 63.158 0.00 0.00 34.06 3.58
355 356 1.306654 ACCGAGGGGATTGGTGCTA 60.307 57.895 0.00 0.00 44.81 3.49
356 357 2.610859 ACCGAGGGGATTGGTGCT 60.611 61.111 0.00 0.00 44.81 4.40
360 361 2.438434 GTGCACCGAGGGGATTGG 60.438 66.667 5.22 0.00 38.62 3.16
361 362 2.438434 GGTGCACCGAGGGGATTG 60.438 66.667 22.49 0.00 36.97 2.67
362 363 2.933287 TGGTGCACCGAGGGGATT 60.933 61.111 30.07 0.00 39.43 3.01
363 364 3.717294 GTGGTGCACCGAGGGGAT 61.717 66.667 30.07 0.00 39.43 3.85
372 373 0.679960 GGGGAACATAGGTGGTGCAC 60.680 60.000 8.80 8.80 34.65 4.57
373 374 1.688811 GGGGAACATAGGTGGTGCA 59.311 57.895 0.00 0.00 34.65 4.57
374 375 1.451387 CGGGGAACATAGGTGGTGC 60.451 63.158 0.00 0.00 31.73 5.01
375 376 1.223487 CCGGGGAACATAGGTGGTG 59.777 63.158 0.00 0.00 0.00 4.17
376 377 1.229723 ACCGGGGAACATAGGTGGT 60.230 57.895 6.32 0.00 35.36 4.16
377 378 3.735725 ACCGGGGAACATAGGTGG 58.264 61.111 6.32 0.00 35.36 4.61
378 379 4.954933 CACCGGGGAACATAGGTG 57.045 61.111 6.32 0.00 46.52 4.00
379 380 1.921346 TGCACCGGGGAACATAGGT 60.921 57.895 8.67 0.00 37.49 3.08
380 381 1.451387 GTGCACCGGGGAACATAGG 60.451 63.158 11.03 0.00 0.00 2.57
381 382 0.744414 CTGTGCACCGGGGAACATAG 60.744 60.000 20.68 3.23 0.00 2.23
382 383 1.298340 CTGTGCACCGGGGAACATA 59.702 57.895 20.68 0.00 0.00 2.29
383 384 2.034066 CTGTGCACCGGGGAACAT 59.966 61.111 20.68 0.00 0.00 2.71
384 385 4.263572 CCTGTGCACCGGGGAACA 62.264 66.667 19.03 19.03 35.76 3.18
385 386 1.906105 TATCCTGTGCACCGGGGAAC 61.906 60.000 25.00 8.34 40.38 3.62
386 387 1.613928 TATCCTGTGCACCGGGGAA 60.614 57.895 25.00 8.44 40.38 3.97
387 388 2.039787 TATCCTGTGCACCGGGGA 59.960 61.111 25.00 22.41 40.38 4.81
388 389 1.983119 ATGTATCCTGTGCACCGGGG 61.983 60.000 25.00 18.37 40.38 5.73
389 390 0.107214 AATGTATCCTGTGCACCGGG 60.107 55.000 25.00 20.69 41.48 5.73
390 391 1.134401 AGAATGTATCCTGTGCACCGG 60.134 52.381 20.42 20.42 0.00 5.28
391 392 2.205074 GAGAATGTATCCTGTGCACCG 58.795 52.381 15.69 8.02 0.00 4.94
392 393 3.201290 CTGAGAATGTATCCTGTGCACC 58.799 50.000 15.69 0.00 0.00 5.01
393 394 3.866651 ACTGAGAATGTATCCTGTGCAC 58.133 45.455 10.75 10.75 0.00 4.57
394 395 4.558226 AACTGAGAATGTATCCTGTGCA 57.442 40.909 0.00 0.00 0.00 4.57
395 396 5.181748 AGAAACTGAGAATGTATCCTGTGC 58.818 41.667 0.00 0.00 0.00 4.57
396 397 6.875726 TCAAGAAACTGAGAATGTATCCTGTG 59.124 38.462 0.00 0.00 0.00 3.66
397 398 7.009179 TCAAGAAACTGAGAATGTATCCTGT 57.991 36.000 0.00 0.00 0.00 4.00
398 399 7.326454 TCTCAAGAAACTGAGAATGTATCCTG 58.674 38.462 0.87 0.00 46.92 3.86
399 400 7.487822 TCTCAAGAAACTGAGAATGTATCCT 57.512 36.000 0.87 0.00 46.92 3.24
409 410 8.824159 TTCTTAGACAATCTCAAGAAACTGAG 57.176 34.615 0.00 0.00 43.62 3.35
410 411 9.613428 TTTTCTTAGACAATCTCAAGAAACTGA 57.387 29.630 15.27 6.28 43.19 3.41
415 416 8.840321 CCACTTTTTCTTAGACAATCTCAAGAA 58.160 33.333 0.00 0.00 35.72 2.52
416 417 7.041098 GCCACTTTTTCTTAGACAATCTCAAGA 60.041 37.037 0.00 0.00 0.00 3.02
417 418 7.040823 AGCCACTTTTTCTTAGACAATCTCAAG 60.041 37.037 0.00 0.00 0.00 3.02
418 419 6.772716 AGCCACTTTTTCTTAGACAATCTCAA 59.227 34.615 0.00 0.00 0.00 3.02
419 420 6.299141 AGCCACTTTTTCTTAGACAATCTCA 58.701 36.000 0.00 0.00 0.00 3.27
428 429 6.700081 GGTAAAACCAAGCCACTTTTTCTTAG 59.300 38.462 0.00 0.00 38.42 2.18
476 477 4.573201 CCGGCGATTTATGGAGTTAGAAAA 59.427 41.667 9.30 0.00 0.00 2.29
477 478 4.124238 CCGGCGATTTATGGAGTTAGAAA 58.876 43.478 9.30 0.00 0.00 2.52
495 496 1.661112 CGTTTTCTCTTGAGATCCGGC 59.339 52.381 0.00 0.00 0.00 6.13
497 498 2.346847 CAGCGTTTTCTCTTGAGATCCG 59.653 50.000 0.82 5.68 0.00 4.18
499 500 2.675348 CCCAGCGTTTTCTCTTGAGATC 59.325 50.000 0.82 0.00 0.00 2.75
501 502 1.691976 TCCCAGCGTTTTCTCTTGAGA 59.308 47.619 0.00 0.00 0.00 3.27
518 519 2.035442 GCTGTTGCGAGAACCTCCC 61.035 63.158 0.00 0.00 0.00 4.30
520 521 1.294659 CCTGCTGTTGCGAGAACCTC 61.295 60.000 0.00 0.00 43.34 3.85
530 531 1.970114 CTGGGTGAGCCTGCTGTTG 60.970 63.158 1.06 0.00 34.45 3.33
569 577 2.283780 CTGCTGCGCGTATGTGTGAC 62.284 60.000 8.43 0.00 0.00 3.67
733 742 3.630204 GACACGTGTGAGTGGCTG 58.370 61.111 28.82 0.00 46.26 4.85
771 780 4.799473 CATGCGTCGGTTGCTGCG 62.799 66.667 0.00 0.00 0.00 5.18
778 787 4.404098 GGGTTCCCATGCGTCGGT 62.404 66.667 2.59 0.00 0.00 4.69
842 851 2.429250 TGTATATATACATGCGGCCGCT 59.571 45.455 45.79 31.19 38.28 5.52
851 860 4.496341 GGCCGCGTACGTGTATATATACAT 60.496 45.833 24.67 14.48 44.25 2.29
852 861 3.181511 GGCCGCGTACGTGTATATATACA 60.182 47.826 25.62 19.51 37.41 2.29
902 911 0.596083 CGATCTGGTGATGGTCTCGC 60.596 60.000 0.00 0.00 32.19 5.03
987 1002 0.317103 CCCTCATCGATCGTCACGTC 60.317 60.000 15.94 0.00 0.00 4.34
1006 1021 3.423154 CTTTGCAGCCCCGACGAC 61.423 66.667 0.00 0.00 0.00 4.34
1107 1126 2.136298 TCTGACGAGCTGGAAGAGAT 57.864 50.000 1.44 0.00 34.07 2.75
1132 1151 0.661020 AAGGAAACCAAACGACGCAG 59.339 50.000 0.00 0.00 0.00 5.18
1133 1152 1.096416 AAAGGAAACCAAACGACGCA 58.904 45.000 0.00 0.00 0.00 5.24
1134 1153 2.031930 TGTAAAGGAAACCAAACGACGC 59.968 45.455 0.00 0.00 0.00 5.19
1143 1198 7.378181 ACAATGATTGACATGTAAAGGAAACC 58.622 34.615 12.80 0.00 39.39 3.27
1144 1199 8.816640 AACAATGATTGACATGTAAAGGAAAC 57.183 30.769 12.80 0.00 39.39 2.78
1149 1204 8.506140 AAACGAACAATGATTGACATGTAAAG 57.494 30.769 12.80 0.00 39.39 1.85
1156 1211 4.556501 GCAGGAAACGAACAATGATTGACA 60.557 41.667 12.80 0.00 0.00 3.58
1157 1212 3.914364 GCAGGAAACGAACAATGATTGAC 59.086 43.478 12.80 4.79 0.00 3.18
1159 1214 3.899734 TGCAGGAAACGAACAATGATTG 58.100 40.909 3.16 3.16 0.00 2.67
1160 1215 3.057315 CCTGCAGGAAACGAACAATGATT 60.057 43.478 29.88 0.00 37.39 2.57
1161 1216 2.489329 CCTGCAGGAAACGAACAATGAT 59.511 45.455 29.88 0.00 37.39 2.45
1162 1217 1.879380 CCTGCAGGAAACGAACAATGA 59.121 47.619 29.88 0.00 37.39 2.57
1163 1218 1.879380 TCCTGCAGGAAACGAACAATG 59.121 47.619 33.41 1.90 42.18 2.82
1232 1289 3.323243 CACGTTTACCTCGGTGAAGATT 58.677 45.455 0.00 0.00 0.00 2.40
1249 1306 4.032355 CGACAACAAAGTAAAATGCACGT 58.968 39.130 0.00 0.00 0.00 4.49
1274 1331 8.421595 ACGTAAACGGAAACAGCAGGTTTATG 62.422 42.308 7.50 10.82 44.99 1.90
1282 1339 1.258458 CGAACGTAAACGGAAACAGCA 59.742 47.619 7.50 0.00 44.95 4.41
1320 1377 4.208460 GTGCAGCACGACGTGTTATTATAT 59.792 41.667 27.32 3.15 35.75 0.86
1321 1378 3.548668 GTGCAGCACGACGTGTTATTATA 59.451 43.478 27.32 7.00 35.75 0.98
1322 1379 2.347452 GTGCAGCACGACGTGTTATTAT 59.653 45.455 27.32 6.08 35.75 1.28
1323 1380 1.722464 GTGCAGCACGACGTGTTATTA 59.278 47.619 27.32 9.79 35.75 0.98
1324 1381 0.511221 GTGCAGCACGACGTGTTATT 59.489 50.000 27.32 9.75 35.75 1.40
1325 1382 2.150424 GTGCAGCACGACGTGTTAT 58.850 52.632 27.32 12.49 35.75 1.89
1552 1615 3.689161 TGGATGTGATGGTAGCTTTTTCG 59.311 43.478 0.00 0.00 0.00 3.46
1553 1616 5.126061 ACATGGATGTGATGGTAGCTTTTTC 59.874 40.000 0.00 0.00 40.03 2.29
1558 1621 5.372343 TTTACATGGATGTGATGGTAGCT 57.628 39.130 2.38 0.00 41.89 3.32
1564 1627 3.066621 CCCCGTTTTACATGGATGTGATG 59.933 47.826 2.38 0.00 41.89 3.07
1602 1665 6.704493 ACGTTACAAGAAAAGCTCTATGAACA 59.296 34.615 0.00 0.00 32.46 3.18
1610 1673 8.319585 GCTAATACTACGTTACAAGAAAAGCTC 58.680 37.037 0.00 0.00 0.00 4.09
1611 1674 7.008992 CGCTAATACTACGTTACAAGAAAAGCT 59.991 37.037 0.00 0.00 0.00 3.74
1612 1675 7.008628 TCGCTAATACTACGTTACAAGAAAAGC 59.991 37.037 0.00 0.00 0.00 3.51
1613 1676 8.385789 TCGCTAATACTACGTTACAAGAAAAG 57.614 34.615 0.00 0.00 0.00 2.27
1618 1681 7.163845 CAGAACTCGCTAATACTACGTTACAAG 59.836 40.741 0.00 0.00 0.00 3.16
1645 1710 6.639632 AAAAAGAAAGATCTACTGCTGCAA 57.360 33.333 3.02 0.00 33.77 4.08
1674 1739 5.903810 ACTATTGTTCTATGGTCTTCGGTC 58.096 41.667 0.00 0.00 0.00 4.79
1703 1768 9.180678 ACTTGCTTTATTTGAATGAAAGTTACG 57.819 29.630 0.00 0.00 33.58 3.18
1751 1817 8.422577 AGATAGGTGGCTTCTGTTTTTATTTT 57.577 30.769 0.00 0.00 0.00 1.82
1755 1821 9.609346 GTATTAGATAGGTGGCTTCTGTTTTTA 57.391 33.333 0.00 0.00 0.00 1.52
1761 1827 5.788450 CTGGTATTAGATAGGTGGCTTCTG 58.212 45.833 0.00 0.00 0.00 3.02
1764 1830 4.235372 AGCTGGTATTAGATAGGTGGCTT 58.765 43.478 0.00 0.00 0.00 4.35
1774 1849 8.171337 TGGATATACCTAGAGCTGGTATTAGA 57.829 38.462 16.90 3.15 45.48 2.10
1776 1851 8.566109 TCATGGATATACCTAGAGCTGGTATTA 58.434 37.037 16.90 6.49 45.48 0.98
1832 1907 3.708403 ACACAGAGATGCATTGAAGGA 57.292 42.857 0.00 0.00 0.00 3.36
1837 1912 4.093115 GTGAGAGAACACAGAGATGCATTG 59.907 45.833 0.00 0.00 40.11 2.82
1880 1964 4.022503 AGCTTGAAGAATTTTGCTCAGGAC 60.023 41.667 0.00 0.00 0.00 3.85
1897 1981 7.643569 TCAAAATCCTTATATGCAAGCTTGA 57.356 32.000 30.39 15.09 0.00 3.02
1910 1994 9.480053 CAAAATCTTCAAAGCTCAAAATCCTTA 57.520 29.630 0.00 0.00 0.00 2.69
1987 2071 7.324935 TGAGCATAATCATCAAACAATTTGCT 58.675 30.769 0.00 0.00 40.43 3.91
2008 2092 2.760092 TCCCCAAACAATTGCTATGAGC 59.240 45.455 5.05 0.00 42.82 4.26
2009 2093 3.382546 CCTCCCCAAACAATTGCTATGAG 59.617 47.826 5.05 4.57 35.10 2.90
2010 2094 3.245586 ACCTCCCCAAACAATTGCTATGA 60.246 43.478 5.05 0.00 35.10 2.15
2011 2095 3.099141 ACCTCCCCAAACAATTGCTATG 58.901 45.455 5.05 2.08 35.10 2.23
2012 2096 3.099141 CACCTCCCCAAACAATTGCTAT 58.901 45.455 5.05 0.00 35.10 2.97
2013 2097 2.109128 TCACCTCCCCAAACAATTGCTA 59.891 45.455 5.05 0.00 35.10 3.49
2014 2098 1.133199 TCACCTCCCCAAACAATTGCT 60.133 47.619 5.05 0.00 35.10 3.91
2015 2099 1.337118 TCACCTCCCCAAACAATTGC 58.663 50.000 5.05 0.00 35.10 3.56
2016 2100 4.622260 AAATCACCTCCCCAAACAATTG 57.378 40.909 3.24 3.24 36.25 2.32
2017 2101 4.777366 CCTAAATCACCTCCCCAAACAATT 59.223 41.667 0.00 0.00 0.00 2.32
2018 2102 4.045334 TCCTAAATCACCTCCCCAAACAAT 59.955 41.667 0.00 0.00 0.00 2.71
2019 2103 3.399644 TCCTAAATCACCTCCCCAAACAA 59.600 43.478 0.00 0.00 0.00 2.83
2020 2104 2.990284 TCCTAAATCACCTCCCCAAACA 59.010 45.455 0.00 0.00 0.00 2.83
2021 2105 3.621558 CTCCTAAATCACCTCCCCAAAC 58.378 50.000 0.00 0.00 0.00 2.93
2022 2106 2.580783 CCTCCTAAATCACCTCCCCAAA 59.419 50.000 0.00 0.00 0.00 3.28
2076 2160 2.307496 TCATTGTGCCAAACAGGGAT 57.693 45.000 0.00 0.00 41.14 3.85
2085 2169 3.084536 TGCTAGGATTTCATTGTGCCA 57.915 42.857 0.00 0.00 0.00 4.92
2095 2179 5.474578 TTCGCTCTATCATGCTAGGATTT 57.525 39.130 3.84 0.00 0.00 2.17
2101 2185 3.573967 TGTCCATTCGCTCTATCATGCTA 59.426 43.478 0.00 0.00 0.00 3.49
2112 2196 0.400213 TTTGGGACTGTCCATTCGCT 59.600 50.000 26.94 0.00 38.64 4.93
2121 2205 5.501156 GGTCTTCATCTATTTTGGGACTGT 58.499 41.667 0.00 0.00 0.00 3.55
2133 2217 2.241430 TGAGGAGACCGGTCTTCATCTA 59.759 50.000 38.38 21.32 40.61 1.98
2144 2228 3.594603 ACTGTTGTTATGAGGAGACCG 57.405 47.619 0.00 0.00 0.00 4.79
2155 2239 5.356751 ACTGTGAAATCTGCAACTGTTGTTA 59.643 36.000 20.57 10.19 34.60 2.41
2213 2298 6.934645 TGACCGAGTAAATGTCAGAAATCTTT 59.065 34.615 0.00 0.00 34.28 2.52
2234 2319 4.009675 TGTGTGGCTTATTCTTCATGACC 58.990 43.478 0.00 0.00 0.00 4.02
2241 2326 6.491403 ACAAGATCTTTGTGTGGCTTATTCTT 59.509 34.615 4.86 0.00 0.00 2.52
2247 2332 5.564550 AGATACAAGATCTTTGTGTGGCTT 58.435 37.500 4.86 0.00 34.11 4.35
2249 2334 4.937620 TGAGATACAAGATCTTTGTGTGGC 59.062 41.667 4.86 0.00 34.11 5.01
2309 2394 6.432472 CCTTCAAAAGAAAGAGTTAGCTCCAT 59.568 38.462 2.55 0.00 42.59 3.41
2361 2449 5.012239 CCATGGAATACACATAAGGATGGG 58.988 45.833 5.56 0.00 42.73 4.00
2407 2495 1.131883 GCAAGCCACACAGCTGAATAG 59.868 52.381 23.35 9.59 44.11 1.73
2429 2517 7.493367 ACAGTTTCAGGATATAACTACTCTGC 58.507 38.462 0.00 0.00 31.30 4.26
2430 2518 9.307121 CAACAGTTTCAGGATATAACTACTCTG 57.693 37.037 0.00 0.00 31.30 3.35
2441 2529 5.426689 AGCTCATCAACAGTTTCAGGATA 57.573 39.130 0.00 0.00 0.00 2.59
2445 2533 5.428496 TTCAAGCTCATCAACAGTTTCAG 57.572 39.130 0.00 0.00 0.00 3.02
2448 2536 4.828939 TCCATTCAAGCTCATCAACAGTTT 59.171 37.500 0.00 0.00 0.00 2.66
2484 2572 9.118300 GACTTGGATGATCTATCTGAACATTTT 57.882 33.333 0.00 0.00 38.13 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.