>input_sequence_77069
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------------------------------------------------------ATGAGGGTCGTCGGGGCTGCAAAGCC
GGCGAGGATGTCTTCCATGGAGCGGGAGCCCAAGACGCTCTCCCTCGGCGAGCTCAATTACGCCAGGGTAAGCAA----A
GCACCATCTCTTCCAGCTCGTCAGATCTTCCTGC------------------------------------GTCGTTTGGT
TTCCTTTACATGTCAATC--ATTGTTCGTTTCCTGCAGGAAGCAGCGCTGTACGTGCTGACCACGCGCTCCTCGCAGGAC
GCAGCCCGAATCTTCACCGAGGTAAACGTGCATTTTACTTTGTTGTCGGTCATAAACCTGCTGTTTCCGTTTACGTTCGC
TCGTGATTTTTGTAGCATATAATAA---CACGTCGTGCTGCACGCGTGATGC---GCAGGGTCTGAAGCCGGTGCTCGGC
GTCAGGAGGAACTCCACGGACTCTGACTCGGACGATGACGAGGAAGGGGACGTGTTTGATCCGGACCTGCTCGTCGACGA
TGTCGACGTGCGCCGTAATCGCCGGATGCGTGGGCGCATCGCCAAGAAACGAGACTTTGCTACAGCACCCTTCTAA----
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>chr4B_1_TraesCS4B01G104100
ACCGGTGCACCGGTCGTCCGTTGCACATTTTAAAATGTTAAAAAAAAACTGAAAAAAATTAGCGCATTGGCACAACATCA
ATGTACGTTGTCACAAAAATTTAAAACAATATTCGAAACATTGCTCGAGATACAAAAATAACAAATTTGACATTGAATAG
TACATAACACAAGTTGGACTTCAGTTTTGGCCCATTAGCACATTGACGTCAAATTTGTCATTTTTGTATCTTGACCATTG
TTTTGAATTTTGATTCAAATTTTTATGATAACATACATTGATGTTGTGTCGATAAACTTTTTTTTTTGAATTTTTTAAAA
CATTTTTTAATGTGCAACAGGGTCCGGTGCACCGGTAGCACCAATCCCCTCGGTGCACCACCTATGTTCCCCGGTGCACA
GGATACATTCTCAGTTTCTTGAGATTGTCTAAGAAAAAGTGGCTTGGTTTTACCTTTTTTTAATTGTTTTTACTGTTTTT
CTAACTCCATAAATCGCCGGATCTCAAGAGAAAACGCTGGGAGGTTCTCGCAACAGCAG-------GCTCACCCAGCCGA
CATGATCACACGTCACGTCACACATACGCGCAGCAGCTCGTAACGTGCGCGCAGCGGAGCGGCCG-TTCGAACAACACCA
CGTGCCGGGCGCCCATTGGCCTCACGTCCGGCGAGGCATGCGCTCGATCGGCGGCGACGACGGCTGGCTCTGGATCGGTC
AGGTCGACGGCTCCGACCCACCAGCCACTCACACGTGTCCTCGGTCGCTCCTCCACGGGCGCAGCAACCGACGCATGGGA
ACCCGATGACACGTATGGTGTTCGTGGTTGCTTTCGTTTCCTTTGGCCGCAGCGGCCGCATGTATATATACACGTACGCG
GCCATTCGCTCCTCTCCTCCGCCACAGCGCGCGAGACCATCACCAGATCGAAGCGTGCACCCATTGGTA------ATCCG
CAAGAGACGTGTGGGTATATAGTAAATCGTCGCCCGTACGTGACGTGACGATCGATGAGGGTCGTCGGGGCTGCAAAGCC
GGCGAGGATGTCTTCCATGGAGCGGGAGCCCAAGACGCTCTCCCTCGGCGAGCTCAATTACGCCAGGGTAAGCAA----A
GCACCATCTCTTCCAGCTCGTCAGATCTTCCTGC------------------------------------GTCGTTTGGT
TTCCTTTACATGTCAATC--ATTGTTCGTTTCCTGCAGGAAGCAGCGCTGTACGTGCTGACCACGCGCTCCTCGCAGGAC
GCAGCCCGAATCTTCACCGAGGTAAACGTGCATTTTACTTTGTTGTCGGTCATAAACCTGCTGTTTCCGTTTACGTTCGC
TCGTGATTTTTGTAGCATATAATAA---CACGTCGTGCTGCACGCGTGATGC---GCAGGGTCTGAAGCCGGTGCTCGGC
GTCAGGAGGAACTCCACGGACTCTGACTCGGACGATGACGAGGAAGGGGACGTGTTTGATCCGGACCTGCTCGTCGACGA
TGTCGACGTGCGCCGTAATCGCCGGATGCGTGGGCGCATCGCCAAGAAACGAGACTTTGCTACAGCACCCTTCTAATTAC
CTTCACATCCCTATCGAAAAAGCTACCATCACATCCATGTAAAACGGGGGTCTACAGTTTTGCCTGTTCATAGAGCTTTT
C--TTGTAACGTAGTATTAGCGAGTTCTGTTGCAGCAGTAGATCTTTCTTTTTTTTTGGACCGAAGACCATAGAACAATA
GTTCTACCGTAACTTTCATTCAAA-TAAAGCAAGTTTATGTACAGCCAAAAGAAAAAAAATAAAAACAGAA---------
GCCACCTATCTAATACCAGCTCTAGGTATATCCATGAAGAATTAAGCTAGCTTATCTGTAATCCAGTCCTTCAATGCATC
TCTGTGTT---------CTCTCACCACAATCATCTTAAGGTCAGTCCTGAGCAAAATTCTTCAAGCTTGCATATAAGGAT
TTTGAGCTTTGAAGATTTTGAAGTTCCTCTGCATCCAAATATGCCAGCAGCCCATGATGATTATGCTCATAGCAAATTGT
TTGATGATTATGCTCATAGCAATTGTTTGGGGAGGTGATTTAGGAGGAAAGTTATCTCATCAAAAGCATTAGTGCCCCTA
TCCCTGTTTGGCACAATGAAATCCTAGCATGATAGAGCGAATGGACAGTCCCAAAATAGATGAAGACCGGTCTCCTCATA
ACAACAGTTGCAGATTTCACAGTTATAGTTGGG-CAGATGGAAATTCTTTCTCAAAAAAAGATTTCTGACATTTACTCGG
TCATGAAGAATAAGCCACACAAAGATCTTGTATCTCAGCATTGCAGCACTTTTCCATATATTCTTGGAAATTGA---TGG
AGCTAACTCTTTCTTTTGAAGGTGCTTGTACATTTTGATAGAAGAATACCCATCCTTATGTGTATTCCATGGGTAGCACC
ATCTATCCGGTGAGCTATTCAGCTGTGTGGCTTGCAGCAGAGTAGTTATATCCTGAAACTGTTGATGAGCTTGAATGGAG
AGAGGTGTGTAAAAATGTTCAGATAGATCATCCAAGTCACTGAGTTTCTGAACTGAAATTT
>chr4D_421
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--------------------GAGATTGTTTAAGAAAAAGGGGCTCGTTTTT----TTTTTTGAATGTTTTTACTGTCATT
CTAACTCCATAAATCTCAGCACCTCAAGAGAAAACGCTAGCAGGTTCTCGTAACACCAGGCTCACCGCTCACCCAGCCGA
CATGATCACACGTCACATCACACATACGCGCAGCAGCTCGTAACGTGCGCGCAACGGAGCGGCCGGTTCGAACAGCACCA
CGTGCCGGGCGCCCATTGGCGTCACGTCCGGCGAGGCATGCGCCCGATCGGCGGCGACGACGGCTGGCTCTGGATCGGTG
AGGTCGACGGCTCCGACCCATGCGCCACACACACGTGTCCACCGTCGCTCCTCCACCGGTGCAGCAGCCGACGCATGGGA
GACCCGCGACACGTATGGTGTTCGTGGTTGCTTTCGTTTCCTTTGGTCCCCGTA--------TATATATACACGTACGCG
GCCATTCGCTCCTCTCCTCCGCCACAGAGCACGAGACCATCACCAGATTGAAGCGTACACCCATTGGTAATCCGCATCCG
CAAGAGACGTGTGGGTATA--GTAAATCGTCGCACACACGT-ACGTGACGATCGATGAGGATCGTTGGGGCTGCGAAGCC
GGAGAGGATGTCTTCCATGGAGCGGGAGCCCAAGACGCTCTCCCTCGGCGAGCTCAATTACGCCAGGGTAAGCAA----A
GCACCGTCTCTTCCAGCTCGTCAGATCTTCGCACACACGTACCATGAAAAGCTTGAAATAACATTATCATGTCGTTTCAT
TTCGTTTACACATGCCAATTATTGTTCGTTTCCTGCAGGAAGCAGCGCTGTACGTGCTGACCACGCGCTCCTCGCAGGAC
GCAGCCCGGATCTTCACCGAGGTAA-CGTGCATTTTACTTTGCTGCTGGTGATAAACCAGCTGTTTCCGTCTACGTTCGC
TCGTGATTTTTGTAGCG-----TAA---CACGTCGTGCTGCACGCGTGATTTTGTGCAGGGTCTGAAGCCGGTGCTCGGC
GTCAGGAGCAACTCCACGGACTCTGACTCGGAGGATGACGAGGAAGGGGACGTGTTTGATCCGGACGTGCTCGTCGACGA
TCACGACGTGCGCCGTCATCGCCAGATGCGTGGCCGCATCGGCAAGAAACGAGACTTCGCTACAGCGCCCTTCTAATTAC
GTTCACATCC----------------------------------------------------------------------
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>chr4A_532
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---------------------------------------------------AACAGCGG-------GCTCACCTAGCCGA
CATGATCACATCACG-------CATACGCGCAGCAGCTCGTAACGTGCGCGCAACGGAGCGGCCGGTTCGAACAGCACCA
CGTGCCGGGCGCCCATTGGCCTCACGTTCCGCGAGCCATGCACTCGATCGGCGGCGTCGACGGCTGGCTCTGGATCGGTC
AGGTCGACGGCTCCGACCCACGAGCCACTCACACGTGTCCACCGCATCTCCTCCACCGGTGCAGCAGCCGACGCATGGGA
ACCCCACGACACGTATGGTGTTCGTTGTTGCTTTCGTTTCCTTTGGCCGACTC--------GTATATATACACGTACGCG
GCCATTGGCTCCTCTCCTCCGCCACAGCGCACGAGACCATCACCAGATCGAAGCGTACACCCATTGGTAATCCGCATCCG
CAAGAGACGTGTGGGTATA--GTAAATCGTCGCGCGTACGT-ACGTGACGATCGATGAGGATCGTCGGGGTTGCAAAGCC
GGAGAGGATGTCTTCCATGGAGCGGGAGCCCAAGACGCTCTCCCTCGGCGAGCTCAATTACGCCAGGGTAAGCAAATTAA
GCACCGTCTCTTCCAGCTCGTCAGATCTTCGCACACACGTACCATGAAAAGCTTGACGTAACATTATTATGTCGT-----
------------------------TTCGTTTCCTGCAGGAAGCGGCGCTGTACGTGCTGACCACGCACTCCTCGCAGGAC
GCAGCCCGGATCTTCACCGAGGTAA-CGTGCATTTTACTTTCTTGCCGGTGATAAACTAGCTGTTTCCGTTTACGTTTGC
TCGTGATTTTTCTAGCG-----TAATAACACGGCGTGCTGCACGCGTGATATTGTGCAGGGTCTGAAGCCGGTGCTCGGC
GTCAGGAGGAACTCGACGGACTCTGACTCGGACGACGACGAGGAAGGGGACGTGTTTGATCCGGACGCGCTCCTCGACGA
TCACGACGTGCGCCGTCATCGCCAGATGCGTGGGCGCATCGCCAAGAAACGAGACTTTGCTACAGCA---TTCTAATTAC
CTTCACATACCTATAAAAAAGGCTACGATCACATCCATGTAAAACGGGGGTCTACAGTTTTGCCCGTTCATAAGAGTTTT
TTTTTGTAACGTAGTATTAGCGAGTTCTGCTGCAGCAGTAGATTTTTC-TT-----------------------------
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>chr4A_1653
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------------------------------------AGTAGATGTGTC-TTTTCTTTTAACCGAAGACCGTAAAACAATA
GTTCTACGGTAATTTTCATTCAAAATAAAGCAAAGTTATGTACATC------------AAAAAAGAAAATAAACAAAAGA
GCCATCTAACCAATACCAGCTATAGGTATATCCATGAAGAATTAAGCTAGGTTATCTGTAACCCAGCCGTTGAAAGCCTC
TATGTGTTTTTCTTTGGTCCTCACAACTATCATCTTCAGGTCATTTGTGAGTAAACTTCTCCAAGCTTGCAGAGATGGAG
TTTGAGCTTTGAAAATTTTGGTGTTCCTCTGCATCCAAATATGCCAGCAGCCTATGGTGATTATGATCATTGCAAATTGC
--------------------------TTGGGGAGGTGAGTTAGAAGAAAGGTTATCTCATCAAAAGCAGTAGTGCCCCTC
TCCTTGTTGGGCACAATTGAATCCCAGCATGTCAGCGCAAAAGGGCAGTCCCAAAAGAGATGTAGACTGGTTTCCTCACA
AGAATAGTTGCAGATTTCGCAGTTATAGTT-GG-CAGATGGAAATTCTTTCTGAAAAGAAGATTTCTAACATTTACCCTG
TCATGCAGAATCAACCACACAAAGATGTTGTATCTGAGCATTGCAACACTTTTCCATATATTCTTGAAGATTGGTGAG--
-GCTGACTCTTTTTCTA-AAGGTGCTTGTACATTTTGATAGAAGAATATCCATCACCGTGTGTATTCCATGGGTAGCACC
ATCTATCCAGTGAGTTATTCAGTTGAGTAGTTTGCATAAGAGCAGTTACCTCTTGGAACTATTGATGAGCTTGAATGGAG
ACTGGTGTAAAGAAATGTTCAGATATATCATCCAAGTCTCCAAGTTTCTGGACTGGAATTT
>chr2B_1665
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------------------------------------------------TTTTTTTTTGAACCGAGGAACGTAGAACAATT
GTTCTACGGTAATTTTCATTCAAAATAAAGTAAAGTTATGTACATCCAAAAGAAAACAAAACAAAAAAGTAAACACTAAG
GCCACCTAA-CAATACCAGCTCTAGGTATATCCATGAAGAATTAAGCTAGTTTATCTGCAATCCAACCCTTGAATGCATG
TCTGTGTTTTTCTTTAGCTCTCACAACTACCATCTTAAGATCATTCCTGAGCAAAATTCTCCAACCTTGCACAGAAGGGT
TTTGAGCTTTGAAGATTTTGGAGTTCCTCTACATCCAAATATGCCAGCAGCCCATGATGACTATGCTCATTCCAAATTGC
--------------------------TTGGGGAGGTGATTTAGCAAGAGAGTTATCTCATCAAAAGCATTAGTGCCTCTC
TCCC----------AATGGAAT-CCAGCATGATAGCGCGAATGGGCAGTCCCAAAAAAGATGAAGACTGCTCTCCTCACA
ACAACAGTTGCAGATTTCACAGTTATAGTT-GGGCAGATGGAAGTTCTTTCTCAAAAGAAGATTTCTGACATTTACTCTG
TCATGCAGAATCAACCACACAAAGATCTTGTATCTCAGCATTTCAGCACTTTTCCATATATTCTTGAAAATTGGTGGTGG
AGCTAACTCTTTCTTTTGGAGATGCTTGTACATTTTGATAGAAGAATATCCATCCTTATTTCTATTCCATGGGTAGCACC
ATCTATCCAGTGAGTTATTCAGCTGTGCAGCCTGCATAAGAGCAGTTTCATCTTGGAACTGCTGATGAGCTTGAACTAAG
AGAGGTGTGAAGAAATGTTCAGAGAGATCATCCAAGTCTCTGAGT----------------
>chr6A_1778
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-----------AATACCAGCTCTAGGTATATCCATGAAGAATTAAGCTAGGTTATCTATAATCCAGCCCTTGAAAGCGTC
TCTGTGTTTTTCTTTAGCTCTCACCACTATCATCTTAAGGTCATTCCCAGACAAAGTTCTCCAAGCTTGCACGAAAGGAG
TTTTACCTTTGAAGATTTTGGAGTTTCTCTGCGTCCAAATATGCCAGCAGCCCATGATGATTATGTTCATTGCAAATTGC
--------------------------TTGGGGAGGTGGTTTAGGAGGAAAGTTATCTCATCAAAAGTATTAGTGCCTCTC
TCCTTGTTGGGCACAATGGAATCCCAGCATGATAGTGCGAATGGGCAGTCCCAAAAAAGATGAAGACTAGTCTCCTCACA
CGAACAATTGCAGATTTCGCAGTTATAGTT-GGGCAGATGGAAATTCTTTCTCAACAGAAGATTTCTGACATTTACCCTT
TCATGCAAAATCAACCACACAAAGATCTTGTACCTCAGCATTGCAGCACTTTTCCATATATTCTTGGAAAATGGTGAG--
-GCTGACTCTTTCTTTTGAAGATGCTTGTACATTTTGATAGAAGAAT---------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--------S----------S----S-S----SSSS------S-S------------SS--
---------------S-S-S-S----------------S-S---------S-----------------------------
----------------S------------------------------------S--------------------S-----
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---------------------S------------------S-S-------------S--S------S-------------
----S-S-------------------------------------------S--SSSSSSSS-------------------
------------------------------S-------------------------S-----------------------
-------------------SS------------S-------S------------------S-------------------
--S-----------------------------------------------------------------------------
-----S------------------------SSS--------------------------------------------SS-
---S------SS-SSSSS--------------------------------------------------------------
--------S----------------S-------------------S----S-------S---------------------
----------------SSSSSS----------------------------SS----------------------------
------------------------------------------------------------------S-------------
-SS-------------S------S--------------------------------------------------------
--------------SS----S-----S-------------------------------------S-------SSSS----
S----------------------------S-------------S--------------S----------S----------
-------S----S--------------------SS---------S-----------S---S-----S--S----------
--------S-S---------------------------------------S---------------S----S--------
---------------------------S---------------S----------------S----------S-S------
--------------------S-------------------------------------------------S--------S
SSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------S
--------S---------S-----S----------S--------S-----------S----------S----------S-
------------------------------S--------------------------S--------------------S-
-----S-----S-S-----------------------------------------------------------S------
------------------------------------------------S-------------------------------
--------S-----S-------------S-------SS----S-----S---S--S------------------------
---------S-S--------------------------S-----------S----S-----
>forward_409
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---------------------------------------------------------------------CCCGGTGCACA
GGATACATT-----------------------------------------------------------------------
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>reverse_2196
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-----------------------------------AGCGAATGGACAGTCCCAAA-------------------------
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