Multiple sequence alignment - TraesCS4B01G100200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G100200 chr4B 100.000 3002 0 0 1 3002 105963280 105960279 0.000000e+00 5544
1 TraesCS4B01G100200 chr4A 89.389 2045 154 31 493 2520 514427112 514429110 0.000000e+00 2516
2 TraesCS4B01G100200 chr4A 92.558 430 21 5 2574 3002 514429255 514429674 9.200000e-170 606
3 TraesCS4B01G100200 chr4D 90.481 914 68 14 1618 2520 72913343 72912438 0.000000e+00 1188
4 TraesCS4B01G100200 chr4D 93.240 429 19 4 2574 3002 72912264 72911846 9.140000e-175 623


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G100200 chr4B 105960279 105963280 3001 True 5544.0 5544 100.0000 1 3002 1 chr4B.!!$R1 3001
1 TraesCS4B01G100200 chr4A 514427112 514429674 2562 False 1561.0 2516 90.9735 493 3002 2 chr4A.!!$F1 2509
2 TraesCS4B01G100200 chr4D 72911846 72913343 1497 True 905.5 1188 91.8605 1618 3002 2 chr4D.!!$R1 1384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.028902 CTGGCCGGTTAATTTAGCGC 59.971 55.0 10.32 0.0 37.68 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2200 0.037326 TGCGCTGCTTGTAGTAAGCT 60.037 50.0 9.73 0.0 43.38 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.065575 CAACACGATACCTCCAGCC 57.934 57.895 0.00 0.00 0.00 4.85
19 20 0.462047 CAACACGATACCTCCAGCCC 60.462 60.000 0.00 0.00 0.00 5.19
20 21 0.907704 AACACGATACCTCCAGCCCA 60.908 55.000 0.00 0.00 0.00 5.36
21 22 1.330655 ACACGATACCTCCAGCCCAG 61.331 60.000 0.00 0.00 0.00 4.45
22 23 2.423446 CGATACCTCCAGCCCAGC 59.577 66.667 0.00 0.00 0.00 4.85
23 24 2.434843 CGATACCTCCAGCCCAGCA 61.435 63.158 0.00 0.00 0.00 4.41
24 25 1.147153 GATACCTCCAGCCCAGCAC 59.853 63.158 0.00 0.00 0.00 4.40
25 26 1.616327 ATACCTCCAGCCCAGCACA 60.616 57.895 0.00 0.00 0.00 4.57
26 27 1.915078 ATACCTCCAGCCCAGCACAC 61.915 60.000 0.00 0.00 0.00 3.82
27 28 3.957586 CCTCCAGCCCAGCACACA 61.958 66.667 0.00 0.00 0.00 3.72
28 29 2.670934 CTCCAGCCCAGCACACAC 60.671 66.667 0.00 0.00 0.00 3.82
29 30 4.269523 TCCAGCCCAGCACACACC 62.270 66.667 0.00 0.00 0.00 4.16
35 36 3.653009 CCAGCACACACCGCACAG 61.653 66.667 0.00 0.00 0.00 3.66
39 40 4.935495 CACACACCGCACAGGCCT 62.935 66.667 0.00 0.00 46.52 5.19
40 41 3.238497 ACACACCGCACAGGCCTA 61.238 61.111 3.98 0.00 46.52 3.93
41 42 2.031919 CACACCGCACAGGCCTAA 59.968 61.111 3.98 0.00 46.52 2.69
42 43 1.377202 CACACCGCACAGGCCTAAT 60.377 57.895 3.98 0.00 46.52 1.73
43 44 0.960364 CACACCGCACAGGCCTAATT 60.960 55.000 3.98 0.00 46.52 1.40
44 45 0.676782 ACACCGCACAGGCCTAATTC 60.677 55.000 3.98 0.00 46.52 2.17
45 46 1.077716 ACCGCACAGGCCTAATTCC 60.078 57.895 3.98 0.00 46.52 3.01
46 47 2.180204 CCGCACAGGCCTAATTCCG 61.180 63.158 3.98 4.10 36.38 4.30
47 48 2.823829 CGCACAGGCCTAATTCCGC 61.824 63.158 3.98 0.62 36.38 5.54
48 49 1.452108 GCACAGGCCTAATTCCGCT 60.452 57.895 3.98 0.00 0.00 5.52
49 50 1.032114 GCACAGGCCTAATTCCGCTT 61.032 55.000 3.98 0.00 0.00 4.68
50 51 1.017387 CACAGGCCTAATTCCGCTTC 58.983 55.000 3.98 0.00 0.00 3.86
51 52 0.107165 ACAGGCCTAATTCCGCTTCC 60.107 55.000 3.98 0.00 0.00 3.46
52 53 0.107214 CAGGCCTAATTCCGCTTCCA 60.107 55.000 3.98 0.00 0.00 3.53
53 54 0.107165 AGGCCTAATTCCGCTTCCAC 60.107 55.000 1.29 0.00 0.00 4.02
54 55 0.393808 GGCCTAATTCCGCTTCCACA 60.394 55.000 0.00 0.00 0.00 4.17
55 56 1.017387 GCCTAATTCCGCTTCCACAG 58.983 55.000 0.00 0.00 0.00 3.66
56 57 1.017387 CCTAATTCCGCTTCCACAGC 58.983 55.000 0.00 0.00 46.31 4.40
64 65 1.079612 GCTTCCACAGCCCATTTGC 60.080 57.895 0.00 0.00 43.65 3.68
65 66 1.538687 GCTTCCACAGCCCATTTGCT 61.539 55.000 0.00 0.00 43.65 3.91
71 72 3.704151 AGCCCATTTGCTGAAGCC 58.296 55.556 0.00 0.00 40.90 4.35
72 73 1.077985 AGCCCATTTGCTGAAGCCT 59.922 52.632 0.00 0.00 40.90 4.58
73 74 0.543646 AGCCCATTTGCTGAAGCCTT 60.544 50.000 0.00 0.00 40.90 4.35
74 75 0.322648 GCCCATTTGCTGAAGCCTTT 59.677 50.000 0.00 0.00 41.18 3.11
75 76 1.673923 GCCCATTTGCTGAAGCCTTTC 60.674 52.381 0.00 0.00 41.18 2.62
76 77 1.619827 CCCATTTGCTGAAGCCTTTCA 59.380 47.619 0.00 0.00 40.92 2.69
77 78 2.611224 CCCATTTGCTGAAGCCTTTCAC 60.611 50.000 0.00 0.00 38.37 3.18
78 79 2.036217 CCATTTGCTGAAGCCTTTCACA 59.964 45.455 0.00 0.00 38.37 3.58
79 80 2.869233 TTTGCTGAAGCCTTTCACAC 57.131 45.000 0.00 0.00 38.37 3.82
80 81 1.761449 TTGCTGAAGCCTTTCACACA 58.239 45.000 0.00 0.00 38.37 3.72
81 82 1.761449 TGCTGAAGCCTTTCACACAA 58.239 45.000 0.00 0.00 38.37 3.33
82 83 1.405105 TGCTGAAGCCTTTCACACAAC 59.595 47.619 0.00 0.00 38.37 3.32
83 84 1.405105 GCTGAAGCCTTTCACACAACA 59.595 47.619 0.00 0.00 38.37 3.33
84 85 2.542411 GCTGAAGCCTTTCACACAACAG 60.542 50.000 0.00 0.00 38.37 3.16
85 86 2.945008 CTGAAGCCTTTCACACAACAGA 59.055 45.455 0.00 0.00 38.37 3.41
86 87 2.682856 TGAAGCCTTTCACACAACAGAC 59.317 45.455 0.00 0.00 38.37 3.51
87 88 2.418368 AGCCTTTCACACAACAGACA 57.582 45.000 0.00 0.00 0.00 3.41
88 89 2.722094 AGCCTTTCACACAACAGACAA 58.278 42.857 0.00 0.00 0.00 3.18
89 90 2.423538 AGCCTTTCACACAACAGACAAC 59.576 45.455 0.00 0.00 0.00 3.32
90 91 2.479560 GCCTTTCACACAACAGACAACC 60.480 50.000 0.00 0.00 0.00 3.77
91 92 2.223249 CCTTTCACACAACAGACAACCG 60.223 50.000 0.00 0.00 0.00 4.44
92 93 0.730265 TTCACACAACAGACAACCGC 59.270 50.000 0.00 0.00 0.00 5.68
93 94 0.391793 TCACACAACAGACAACCGCA 60.392 50.000 0.00 0.00 0.00 5.69
94 95 0.248054 CACACAACAGACAACCGCAC 60.248 55.000 0.00 0.00 0.00 5.34
95 96 0.675208 ACACAACAGACAACCGCACA 60.675 50.000 0.00 0.00 0.00 4.57
96 97 0.248054 CACAACAGACAACCGCACAC 60.248 55.000 0.00 0.00 0.00 3.82
97 98 0.392461 ACAACAGACAACCGCACACT 60.392 50.000 0.00 0.00 0.00 3.55
98 99 0.732571 CAACAGACAACCGCACACTT 59.267 50.000 0.00 0.00 0.00 3.16
99 100 1.132262 CAACAGACAACCGCACACTTT 59.868 47.619 0.00 0.00 0.00 2.66
100 101 1.014352 ACAGACAACCGCACACTTTC 58.986 50.000 0.00 0.00 0.00 2.62
101 102 1.299541 CAGACAACCGCACACTTTCT 58.700 50.000 0.00 0.00 0.00 2.52
102 103 1.261619 CAGACAACCGCACACTTTCTC 59.738 52.381 0.00 0.00 0.00 2.87
103 104 1.134521 AGACAACCGCACACTTTCTCA 60.135 47.619 0.00 0.00 0.00 3.27
104 105 1.668751 GACAACCGCACACTTTCTCAA 59.331 47.619 0.00 0.00 0.00 3.02
105 106 2.088423 ACAACCGCACACTTTCTCAAA 58.912 42.857 0.00 0.00 0.00 2.69
106 107 2.490115 ACAACCGCACACTTTCTCAAAA 59.510 40.909 0.00 0.00 0.00 2.44
107 108 3.057174 ACAACCGCACACTTTCTCAAAAA 60.057 39.130 0.00 0.00 0.00 1.94
131 132 2.271821 AAAAACAGACAACCGCACAC 57.728 45.000 0.00 0.00 0.00 3.82
132 133 1.169577 AAAACAGACAACCGCACACA 58.830 45.000 0.00 0.00 0.00 3.72
133 134 0.450184 AAACAGACAACCGCACACAC 59.550 50.000 0.00 0.00 0.00 3.82
134 135 1.373590 AACAGACAACCGCACACACC 61.374 55.000 0.00 0.00 0.00 4.16
135 136 2.203153 AGACAACCGCACACACCC 60.203 61.111 0.00 0.00 0.00 4.61
136 137 2.203153 GACAACCGCACACACCCT 60.203 61.111 0.00 0.00 0.00 4.34
137 138 2.203153 ACAACCGCACACACCCTC 60.203 61.111 0.00 0.00 0.00 4.30
138 139 2.203139 CAACCGCACACACCCTCA 60.203 61.111 0.00 0.00 0.00 3.86
139 140 1.821759 CAACCGCACACACCCTCAA 60.822 57.895 0.00 0.00 0.00 3.02
140 141 1.077357 AACCGCACACACCCTCAAA 60.077 52.632 0.00 0.00 0.00 2.69
141 142 0.681564 AACCGCACACACCCTCAAAA 60.682 50.000 0.00 0.00 0.00 2.44
142 143 0.681564 ACCGCACACACCCTCAAAAA 60.682 50.000 0.00 0.00 0.00 1.94
165 166 9.923786 AAAAATAAAAATAAAACAGACAACCGC 57.076 25.926 0.00 0.00 0.00 5.68
166 167 8.649973 AAATAAAAATAAAACAGACAACCGCA 57.350 26.923 0.00 0.00 0.00 5.69
167 168 5.959652 AAAAATAAAACAGACAACCGCAC 57.040 34.783 0.00 0.00 0.00 5.34
168 169 2.961522 ATAAAACAGACAACCGCACG 57.038 45.000 0.00 0.00 0.00 5.34
169 170 1.937278 TAAAACAGACAACCGCACGA 58.063 45.000 0.00 0.00 0.00 4.35
170 171 1.088306 AAAACAGACAACCGCACGAA 58.912 45.000 0.00 0.00 0.00 3.85
171 172 1.088306 AAACAGACAACCGCACGAAA 58.912 45.000 0.00 0.00 0.00 3.46
172 173 1.088306 AACAGACAACCGCACGAAAA 58.912 45.000 0.00 0.00 0.00 2.29
173 174 1.088306 ACAGACAACCGCACGAAAAA 58.912 45.000 0.00 0.00 0.00 1.94
174 175 1.063469 ACAGACAACCGCACGAAAAAG 59.937 47.619 0.00 0.00 0.00 2.27
175 176 1.329292 CAGACAACCGCACGAAAAAGA 59.671 47.619 0.00 0.00 0.00 2.52
176 177 1.597663 AGACAACCGCACGAAAAAGAG 59.402 47.619 0.00 0.00 0.00 2.85
177 178 1.595794 GACAACCGCACGAAAAAGAGA 59.404 47.619 0.00 0.00 0.00 3.10
178 179 1.597663 ACAACCGCACGAAAAAGAGAG 59.402 47.619 0.00 0.00 0.00 3.20
179 180 0.586802 AACCGCACGAAAAAGAGAGC 59.413 50.000 0.00 0.00 0.00 4.09
180 181 0.531974 ACCGCACGAAAAAGAGAGCA 60.532 50.000 0.00 0.00 0.00 4.26
181 182 0.164647 CCGCACGAAAAAGAGAGCAG 59.835 55.000 0.00 0.00 0.00 4.24
182 183 1.139989 CGCACGAAAAAGAGAGCAGA 58.860 50.000 0.00 0.00 0.00 4.26
183 184 1.136502 CGCACGAAAAAGAGAGCAGAC 60.137 52.381 0.00 0.00 0.00 3.51
184 185 1.867233 GCACGAAAAAGAGAGCAGACA 59.133 47.619 0.00 0.00 0.00 3.41
185 186 2.287915 GCACGAAAAAGAGAGCAGACAA 59.712 45.455 0.00 0.00 0.00 3.18
186 187 3.846383 GCACGAAAAAGAGAGCAGACAAC 60.846 47.826 0.00 0.00 0.00 3.32
187 188 2.872858 ACGAAAAAGAGAGCAGACAACC 59.127 45.455 0.00 0.00 0.00 3.77
188 189 2.096713 CGAAAAAGAGAGCAGACAACCG 60.097 50.000 0.00 0.00 0.00 4.44
189 190 1.230324 AAAAGAGAGCAGACAACCGC 58.770 50.000 0.00 0.00 0.00 5.68
190 191 0.106708 AAAGAGAGCAGACAACCGCA 59.893 50.000 0.00 0.00 0.00 5.69
191 192 0.601311 AAGAGAGCAGACAACCGCAC 60.601 55.000 0.00 0.00 0.00 5.34
192 193 2.356313 AGAGCAGACAACCGCACG 60.356 61.111 0.00 0.00 0.00 5.34
193 194 4.077188 GAGCAGACAACCGCACGC 62.077 66.667 0.00 0.00 0.00 5.34
232 233 2.027751 GCCTAGATCGGCGGTGAC 59.972 66.667 7.21 0.00 40.79 3.67
258 259 3.745803 GTCGCCGTCGAGGAACCT 61.746 66.667 6.70 0.00 46.46 3.50
259 260 2.046023 TCGCCGTCGAGGAACCTA 60.046 61.111 6.70 0.00 45.00 3.08
260 261 2.110967 TCGCCGTCGAGGAACCTAG 61.111 63.158 6.70 0.00 45.00 3.02
261 262 2.110967 CGCCGTCGAGGAACCTAGA 61.111 63.158 6.70 0.00 45.00 2.43
262 263 1.728672 GCCGTCGAGGAACCTAGAG 59.271 63.158 6.70 0.00 45.00 2.43
263 264 1.726533 GCCGTCGAGGAACCTAGAGG 61.727 65.000 6.70 13.78 45.00 3.69
265 266 4.958313 GCCGTCGAGGAACCTAGAGGTA 62.958 59.091 17.37 0.00 45.31 3.08
277 278 4.336889 CCTAGAGGTAATGCCAAATCGA 57.663 45.455 0.00 0.00 40.61 3.59
278 279 4.058817 CCTAGAGGTAATGCCAAATCGAC 58.941 47.826 0.00 0.00 40.61 4.20
279 280 3.627395 AGAGGTAATGCCAAATCGACA 57.373 42.857 0.00 0.00 40.61 4.35
280 281 4.156455 AGAGGTAATGCCAAATCGACAT 57.844 40.909 0.00 0.00 40.61 3.06
281 282 5.290493 AGAGGTAATGCCAAATCGACATA 57.710 39.130 0.00 0.00 40.61 2.29
282 283 5.869579 AGAGGTAATGCCAAATCGACATAT 58.130 37.500 0.00 0.00 40.61 1.78
283 284 6.299141 AGAGGTAATGCCAAATCGACATATT 58.701 36.000 0.00 0.00 40.61 1.28
284 285 6.772716 AGAGGTAATGCCAAATCGACATATTT 59.227 34.615 0.00 0.00 40.61 1.40
285 286 7.285401 AGAGGTAATGCCAAATCGACATATTTT 59.715 33.333 0.00 0.00 40.61 1.82
286 287 7.781056 AGGTAATGCCAAATCGACATATTTTT 58.219 30.769 0.00 0.00 40.61 1.94
287 288 7.920682 AGGTAATGCCAAATCGACATATTTTTC 59.079 33.333 0.00 0.00 40.61 2.29
288 289 7.920682 GGTAATGCCAAATCGACATATTTTTCT 59.079 33.333 0.00 0.00 37.17 2.52
289 290 7.992180 AATGCCAAATCGACATATTTTTCTC 57.008 32.000 0.00 0.00 0.00 2.87
290 291 5.890334 TGCCAAATCGACATATTTTTCTCC 58.110 37.500 0.00 0.00 0.00 3.71
291 292 4.970003 GCCAAATCGACATATTTTTCTCCG 59.030 41.667 0.00 0.00 0.00 4.63
292 293 5.510671 CCAAATCGACATATTTTTCTCCGG 58.489 41.667 0.00 0.00 0.00 5.14
293 294 4.813296 AATCGACATATTTTTCTCCGGC 57.187 40.909 0.00 0.00 0.00 6.13
294 295 3.254470 TCGACATATTTTTCTCCGGCA 57.746 42.857 0.00 0.00 0.00 5.69
295 296 3.194861 TCGACATATTTTTCTCCGGCAG 58.805 45.455 0.00 0.00 0.00 4.85
296 297 3.118920 TCGACATATTTTTCTCCGGCAGA 60.119 43.478 0.00 0.00 0.00 4.26
297 298 3.001330 CGACATATTTTTCTCCGGCAGAC 59.999 47.826 0.00 0.00 0.00 3.51
298 299 3.279434 ACATATTTTTCTCCGGCAGACC 58.721 45.455 0.00 0.00 0.00 3.85
299 300 3.278574 CATATTTTTCTCCGGCAGACCA 58.721 45.455 0.00 0.00 34.57 4.02
300 301 1.826385 ATTTTTCTCCGGCAGACCAG 58.174 50.000 0.00 0.00 34.57 4.00
301 302 0.250727 TTTTTCTCCGGCAGACCAGG 60.251 55.000 0.00 0.00 34.57 4.45
302 303 1.125093 TTTTCTCCGGCAGACCAGGA 61.125 55.000 0.00 0.00 37.19 3.86
303 304 0.909610 TTTCTCCGGCAGACCAGGAT 60.910 55.000 0.00 0.00 37.79 3.24
304 305 0.032515 TTCTCCGGCAGACCAGGATA 60.033 55.000 0.00 0.00 37.79 2.59
305 306 0.468214 TCTCCGGCAGACCAGGATAG 60.468 60.000 0.00 0.00 37.79 2.08
306 307 0.757188 CTCCGGCAGACCAGGATAGT 60.757 60.000 0.00 0.00 37.79 2.12
307 308 0.325296 TCCGGCAGACCAGGATAGTT 60.325 55.000 0.00 0.00 34.85 2.24
308 309 0.541863 CCGGCAGACCAGGATAGTTT 59.458 55.000 0.00 0.00 34.57 2.66
309 310 1.065418 CCGGCAGACCAGGATAGTTTT 60.065 52.381 0.00 0.00 34.57 2.43
310 311 2.280628 CGGCAGACCAGGATAGTTTTC 58.719 52.381 0.00 0.00 34.57 2.29
311 312 2.093447 CGGCAGACCAGGATAGTTTTCT 60.093 50.000 0.00 0.00 34.57 2.52
312 313 3.536570 GGCAGACCAGGATAGTTTTCTC 58.463 50.000 0.00 0.00 35.26 2.87
313 314 3.198853 GGCAGACCAGGATAGTTTTCTCT 59.801 47.826 0.00 0.00 35.26 3.10
314 315 4.187694 GCAGACCAGGATAGTTTTCTCTG 58.812 47.826 0.00 0.00 0.00 3.35
316 317 3.198853 AGACCAGGATAGTTTTCTCTGGC 59.801 47.826 7.50 1.87 46.43 4.85
317 318 2.239907 ACCAGGATAGTTTTCTCTGGCC 59.760 50.000 0.00 0.00 46.43 5.36
318 319 2.555199 CAGGATAGTTTTCTCTGGCCG 58.445 52.381 0.00 0.00 0.00 6.13
319 320 1.486726 AGGATAGTTTTCTCTGGCCGG 59.513 52.381 4.71 4.71 0.00 6.13
320 321 1.209747 GGATAGTTTTCTCTGGCCGGT 59.790 52.381 12.43 0.00 0.00 5.28
321 322 2.355818 GGATAGTTTTCTCTGGCCGGTT 60.356 50.000 12.43 0.00 0.00 4.44
322 323 3.118519 GGATAGTTTTCTCTGGCCGGTTA 60.119 47.826 12.43 0.00 0.00 2.85
323 324 2.943036 AGTTTTCTCTGGCCGGTTAA 57.057 45.000 12.43 4.29 0.00 2.01
324 325 3.434940 AGTTTTCTCTGGCCGGTTAAT 57.565 42.857 12.43 0.00 0.00 1.40
325 326 3.763057 AGTTTTCTCTGGCCGGTTAATT 58.237 40.909 12.43 0.00 0.00 1.40
326 327 4.149598 AGTTTTCTCTGGCCGGTTAATTT 58.850 39.130 12.43 0.00 0.00 1.82
327 328 5.318630 AGTTTTCTCTGGCCGGTTAATTTA 58.681 37.500 12.43 0.00 0.00 1.40
328 329 5.414765 AGTTTTCTCTGGCCGGTTAATTTAG 59.585 40.000 12.43 0.00 0.00 1.85
329 330 2.914059 TCTCTGGCCGGTTAATTTAGC 58.086 47.619 12.43 0.00 0.00 3.09
330 331 1.597663 CTCTGGCCGGTTAATTTAGCG 59.402 52.381 12.43 8.94 38.65 4.26
331 332 0.028902 CTGGCCGGTTAATTTAGCGC 59.971 55.000 10.32 0.00 37.68 5.92
332 333 1.357690 GGCCGGTTAATTTAGCGCC 59.642 57.895 2.29 11.04 37.68 6.53
333 334 1.010462 GCCGGTTAATTTAGCGCCG 60.010 57.895 2.29 0.00 41.82 6.46
334 335 1.708193 GCCGGTTAATTTAGCGCCGT 61.708 55.000 2.29 0.00 40.70 5.68
335 336 0.302589 CCGGTTAATTTAGCGCCGTC 59.697 55.000 2.29 0.00 40.70 4.79
336 337 1.000884 CGGTTAATTTAGCGCCGTCA 58.999 50.000 2.29 0.00 37.87 4.35
337 338 1.595794 CGGTTAATTTAGCGCCGTCAT 59.404 47.619 2.29 0.00 37.87 3.06
338 339 2.796031 CGGTTAATTTAGCGCCGTCATA 59.204 45.455 2.29 0.00 37.87 2.15
339 340 3.245754 CGGTTAATTTAGCGCCGTCATAA 59.754 43.478 2.29 0.00 37.87 1.90
340 341 4.084223 CGGTTAATTTAGCGCCGTCATAAT 60.084 41.667 2.29 0.00 37.87 1.28
341 342 5.144359 GGTTAATTTAGCGCCGTCATAATG 58.856 41.667 2.29 0.00 0.00 1.90
342 343 2.969443 ATTTAGCGCCGTCATAATGC 57.031 45.000 2.29 0.00 0.00 3.56
343 344 1.948104 TTTAGCGCCGTCATAATGCT 58.052 45.000 2.29 0.00 39.59 3.79
344 345 1.217001 TTAGCGCCGTCATAATGCTG 58.783 50.000 2.29 0.00 37.12 4.41
345 346 1.221466 TAGCGCCGTCATAATGCTGC 61.221 55.000 2.29 0.00 37.12 5.25
346 347 2.822758 GCGCCGTCATAATGCTGCA 61.823 57.895 4.13 4.13 0.00 4.41
347 348 1.277739 CGCCGTCATAATGCTGCAG 59.722 57.895 10.11 10.11 0.00 4.41
348 349 1.009222 GCCGTCATAATGCTGCAGC 60.009 57.895 31.89 31.89 42.50 5.25
349 350 1.442526 GCCGTCATAATGCTGCAGCT 61.443 55.000 36.61 21.93 42.66 4.24
350 351 0.585357 CCGTCATAATGCTGCAGCTC 59.415 55.000 36.61 12.36 42.66 4.09
351 352 0.231534 CGTCATAATGCTGCAGCTCG 59.768 55.000 36.61 23.30 42.66 5.03
352 353 1.293924 GTCATAATGCTGCAGCTCGT 58.706 50.000 36.61 23.85 42.66 4.18
353 354 1.667724 GTCATAATGCTGCAGCTCGTT 59.332 47.619 36.61 28.08 42.66 3.85
354 355 2.096496 GTCATAATGCTGCAGCTCGTTT 59.904 45.455 36.61 25.17 42.66 3.60
355 356 2.749076 TCATAATGCTGCAGCTCGTTTT 59.251 40.909 36.61 23.03 42.66 2.43
356 357 2.617250 TAATGCTGCAGCTCGTTTTG 57.383 45.000 36.61 0.00 42.66 2.44
357 358 0.665369 AATGCTGCAGCTCGTTTTGC 60.665 50.000 36.61 11.07 42.66 3.68
358 359 1.521450 ATGCTGCAGCTCGTTTTGCT 61.521 50.000 36.61 9.40 42.66 3.91
363 364 3.034030 AGCTCGTTTTGCTGCCAC 58.966 55.556 0.00 0.00 39.56 5.01
364 365 2.050077 GCTCGTTTTGCTGCCACC 60.050 61.111 0.00 0.00 0.00 4.61
365 366 2.555547 GCTCGTTTTGCTGCCACCT 61.556 57.895 0.00 0.00 0.00 4.00
366 367 1.234615 GCTCGTTTTGCTGCCACCTA 61.235 55.000 0.00 0.00 0.00 3.08
367 368 0.798776 CTCGTTTTGCTGCCACCTAG 59.201 55.000 0.00 0.00 0.00 3.02
368 369 0.605319 TCGTTTTGCTGCCACCTAGG 60.605 55.000 7.41 7.41 41.84 3.02
369 370 1.586154 CGTTTTGCTGCCACCTAGGG 61.586 60.000 14.81 1.73 38.09 3.53
370 371 0.539669 GTTTTGCTGCCACCTAGGGT 60.540 55.000 14.81 0.00 38.09 4.34
371 372 0.187361 TTTTGCTGCCACCTAGGGTT 59.813 50.000 14.81 0.00 38.09 4.11
372 373 0.187361 TTTGCTGCCACCTAGGGTTT 59.813 50.000 14.81 0.00 38.09 3.27
373 374 0.539438 TTGCTGCCACCTAGGGTTTG 60.539 55.000 14.81 1.92 38.09 2.93
374 375 1.378762 GCTGCCACCTAGGGTTTGA 59.621 57.895 14.81 0.00 38.09 2.69
375 376 0.034089 GCTGCCACCTAGGGTTTGAT 60.034 55.000 14.81 0.00 38.09 2.57
376 377 1.616994 GCTGCCACCTAGGGTTTGATT 60.617 52.381 14.81 0.00 38.09 2.57
377 378 2.807676 CTGCCACCTAGGGTTTGATTT 58.192 47.619 14.81 0.00 38.09 2.17
378 379 2.493278 CTGCCACCTAGGGTTTGATTTG 59.507 50.000 14.81 0.00 38.09 2.32
379 380 2.109128 TGCCACCTAGGGTTTGATTTGA 59.891 45.455 14.81 0.00 38.09 2.69
380 381 3.245586 TGCCACCTAGGGTTTGATTTGAT 60.246 43.478 14.81 0.00 38.09 2.57
381 382 3.381590 GCCACCTAGGGTTTGATTTGATC 59.618 47.826 14.81 0.00 38.09 2.92
382 383 3.954258 CCACCTAGGGTTTGATTTGATCC 59.046 47.826 14.81 0.00 31.02 3.36
383 384 3.954258 CACCTAGGGTTTGATTTGATCCC 59.046 47.826 14.81 0.00 38.50 3.85
384 385 3.596046 ACCTAGGGTTTGATTTGATCCCA 59.404 43.478 14.81 0.00 40.48 4.37
385 386 4.210331 CCTAGGGTTTGATTTGATCCCAG 58.790 47.826 0.00 0.00 40.48 4.45
386 387 4.079787 CCTAGGGTTTGATTTGATCCCAGA 60.080 45.833 0.00 0.00 40.48 3.86
387 388 4.614967 AGGGTTTGATTTGATCCCAGAT 57.385 40.909 0.00 0.00 40.48 2.90
388 389 4.951603 AGGGTTTGATTTGATCCCAGATT 58.048 39.130 0.00 0.00 40.48 2.40
389 390 6.091076 AGGGTTTGATTTGATCCCAGATTA 57.909 37.500 0.00 0.00 40.48 1.75
390 391 6.502138 AGGGTTTGATTTGATCCCAGATTAA 58.498 36.000 0.00 0.00 40.48 1.40
391 392 6.381133 AGGGTTTGATTTGATCCCAGATTAAC 59.619 38.462 0.00 0.00 40.48 2.01
392 393 6.265577 GGTTTGATTTGATCCCAGATTAACG 58.734 40.000 0.00 0.00 0.00 3.18
393 394 6.265577 GTTTGATTTGATCCCAGATTAACGG 58.734 40.000 0.00 0.00 0.00 4.44
394 395 4.460263 TGATTTGATCCCAGATTAACGGG 58.540 43.478 0.74 0.74 44.60 5.28
395 396 4.080015 TGATTTGATCCCAGATTAACGGGT 60.080 41.667 6.38 0.00 43.57 5.28
396 397 3.275617 TTGATCCCAGATTAACGGGTG 57.724 47.619 6.38 0.00 43.57 4.61
397 398 1.488812 TGATCCCAGATTAACGGGTGG 59.511 52.381 6.38 0.00 43.57 4.61
398 399 1.766496 GATCCCAGATTAACGGGTGGA 59.234 52.381 6.38 0.00 43.57 4.02
399 400 1.659022 TCCCAGATTAACGGGTGGAA 58.341 50.000 6.38 0.00 43.57 3.53
400 401 1.279846 TCCCAGATTAACGGGTGGAAC 59.720 52.381 6.38 0.00 43.57 3.62
401 402 1.003812 CCCAGATTAACGGGTGGAACA 59.996 52.381 0.00 0.00 39.98 3.18
402 403 2.356135 CCAGATTAACGGGTGGAACAG 58.644 52.381 0.00 0.00 41.80 3.16
403 404 2.027561 CCAGATTAACGGGTGGAACAGA 60.028 50.000 0.00 0.00 41.80 3.41
404 405 3.000727 CAGATTAACGGGTGGAACAGAC 58.999 50.000 0.00 0.00 41.80 3.51
405 406 1.997606 GATTAACGGGTGGAACAGACG 59.002 52.381 0.00 0.00 41.80 4.18
406 407 0.033781 TTAACGGGTGGAACAGACGG 59.966 55.000 0.00 0.00 41.80 4.79
407 408 0.827089 TAACGGGTGGAACAGACGGA 60.827 55.000 0.00 0.00 41.80 4.69
408 409 2.048503 CGGGTGGAACAGACGGAC 60.049 66.667 0.00 0.00 41.80 4.79
409 410 2.571216 CGGGTGGAACAGACGGACT 61.571 63.158 0.00 0.00 41.80 3.85
423 424 5.103000 CAGACGGACTGTAACTATTCTTGG 58.897 45.833 0.00 0.00 41.30 3.61
424 425 5.014858 AGACGGACTGTAACTATTCTTGGA 58.985 41.667 0.00 0.00 0.00 3.53
425 426 5.125739 AGACGGACTGTAACTATTCTTGGAG 59.874 44.000 0.00 0.00 0.00 3.86
426 427 5.014858 ACGGACTGTAACTATTCTTGGAGA 58.985 41.667 0.00 0.00 0.00 3.71
427 428 5.479375 ACGGACTGTAACTATTCTTGGAGAA 59.521 40.000 0.00 0.00 38.78 2.87
428 429 6.154706 ACGGACTGTAACTATTCTTGGAGAAT 59.845 38.462 8.13 8.13 46.01 2.40
429 430 7.042335 CGGACTGTAACTATTCTTGGAGAATT 58.958 38.462 8.33 0.00 41.90 2.17
430 431 7.222999 CGGACTGTAACTATTCTTGGAGAATTC 59.777 40.741 8.33 0.00 41.90 2.17
431 432 8.041323 GGACTGTAACTATTCTTGGAGAATTCA 58.959 37.037 8.44 0.00 41.90 2.57
432 433 9.436957 GACTGTAACTATTCTTGGAGAATTCAA 57.563 33.333 8.44 0.00 41.90 2.69
433 434 9.965902 ACTGTAACTATTCTTGGAGAATTCAAT 57.034 29.630 8.44 0.14 41.90 2.57
435 436 9.958180 TGTAACTATTCTTGGAGAATTCAATGA 57.042 29.630 8.44 0.00 41.90 2.57
437 438 8.868522 AACTATTCTTGGAGAATTCAATGACA 57.131 30.769 8.44 0.00 41.90 3.58
438 439 8.868522 ACTATTCTTGGAGAATTCAATGACAA 57.131 30.769 8.44 4.51 41.90 3.18
439 440 8.734386 ACTATTCTTGGAGAATTCAATGACAAC 58.266 33.333 8.44 0.00 41.90 3.32
440 441 6.957920 TTCTTGGAGAATTCAATGACAACA 57.042 33.333 8.44 0.00 29.63 3.33
441 442 6.957920 TCTTGGAGAATTCAATGACAACAA 57.042 33.333 8.44 0.64 29.63 2.83
442 443 6.738114 TCTTGGAGAATTCAATGACAACAAC 58.262 36.000 8.44 0.00 29.63 3.32
443 444 6.547141 TCTTGGAGAATTCAATGACAACAACT 59.453 34.615 8.44 0.00 29.63 3.16
444 445 6.713762 TGGAGAATTCAATGACAACAACTT 57.286 33.333 8.44 0.00 0.00 2.66
445 446 7.111247 TGGAGAATTCAATGACAACAACTTT 57.889 32.000 8.44 0.00 0.00 2.66
446 447 7.202526 TGGAGAATTCAATGACAACAACTTTC 58.797 34.615 8.44 0.00 0.00 2.62
447 448 6.642540 GGAGAATTCAATGACAACAACTTTCC 59.357 38.462 8.44 0.00 0.00 3.13
448 449 7.352079 AGAATTCAATGACAACAACTTTCCT 57.648 32.000 8.44 0.00 0.00 3.36
449 450 7.785033 AGAATTCAATGACAACAACTTTCCTT 58.215 30.769 8.44 0.00 0.00 3.36
450 451 8.912988 AGAATTCAATGACAACAACTTTCCTTA 58.087 29.630 8.44 0.00 0.00 2.69
451 452 9.696917 GAATTCAATGACAACAACTTTCCTTAT 57.303 29.630 0.00 0.00 0.00 1.73
455 456 8.792633 TCAATGACAACAACTTTCCTTATTAGG 58.207 33.333 0.00 0.00 43.46 2.69
456 457 6.569179 TGACAACAACTTTCCTTATTAGGC 57.431 37.500 0.00 0.00 41.69 3.93
457 458 6.065374 TGACAACAACTTTCCTTATTAGGCA 58.935 36.000 0.00 0.00 41.69 4.75
458 459 6.206634 TGACAACAACTTTCCTTATTAGGCAG 59.793 38.462 0.00 0.00 41.69 4.85
459 460 6.303839 ACAACAACTTTCCTTATTAGGCAGA 58.696 36.000 4.34 0.00 41.69 4.26
460 461 6.775629 ACAACAACTTTCCTTATTAGGCAGAA 59.224 34.615 4.34 0.00 41.69 3.02
461 462 7.286775 ACAACAACTTTCCTTATTAGGCAGAAA 59.713 33.333 4.34 0.00 41.69 2.52
462 463 7.833285 ACAACTTTCCTTATTAGGCAGAAAA 57.167 32.000 4.34 0.00 41.69 2.29
463 464 7.886338 ACAACTTTCCTTATTAGGCAGAAAAG 58.114 34.615 7.69 7.69 41.69 2.27
464 465 7.039714 ACAACTTTCCTTATTAGGCAGAAAAGG 60.040 37.037 11.95 0.00 41.69 3.11
465 466 6.790319 ACTTTCCTTATTAGGCAGAAAAGGA 58.210 36.000 11.95 7.16 42.99 3.36
466 467 6.887002 ACTTTCCTTATTAGGCAGAAAAGGAG 59.113 38.462 11.95 4.79 44.76 3.69
467 468 6.636454 TTCCTTATTAGGCAGAAAAGGAGA 57.364 37.500 10.12 2.51 44.76 3.71
468 469 6.636454 TCCTTATTAGGCAGAAAAGGAGAA 57.364 37.500 7.16 0.00 40.53 2.87
469 470 7.213178 TCCTTATTAGGCAGAAAAGGAGAAT 57.787 36.000 7.16 0.00 40.53 2.40
470 471 7.283329 TCCTTATTAGGCAGAAAAGGAGAATC 58.717 38.462 7.16 0.00 40.53 2.52
471 472 6.488344 CCTTATTAGGCAGAAAAGGAGAATCC 59.512 42.308 3.44 0.00 45.99 3.01
487 488 6.910536 GAGAATCCTATTGACAATCGTGTT 57.089 37.500 3.36 0.00 38.41 3.32
488 489 7.308782 GAGAATCCTATTGACAATCGTGTTT 57.691 36.000 3.36 0.00 38.41 2.83
489 490 7.076842 AGAATCCTATTGACAATCGTGTTTG 57.923 36.000 3.36 0.00 38.41 2.93
490 491 6.655003 AGAATCCTATTGACAATCGTGTTTGT 59.345 34.615 3.36 0.00 42.37 2.83
491 492 7.822334 AGAATCCTATTGACAATCGTGTTTGTA 59.178 33.333 3.36 0.00 39.85 2.41
499 500 5.049060 TGACAATCGTGTTTGTATTCTTGGG 60.049 40.000 0.00 0.00 39.85 4.12
500 501 4.825085 ACAATCGTGTTTGTATTCTTGGGT 59.175 37.500 0.00 0.00 38.04 4.51
508 509 5.894393 TGTTTGTATTCTTGGGTTGGAAAGA 59.106 36.000 0.00 0.00 0.00 2.52
509 510 6.040391 TGTTTGTATTCTTGGGTTGGAAAGAG 59.960 38.462 0.00 0.00 34.09 2.85
510 511 4.079253 TGTATTCTTGGGTTGGAAAGAGC 58.921 43.478 0.00 0.00 34.09 4.09
511 512 2.746279 TTCTTGGGTTGGAAAGAGCA 57.254 45.000 0.00 0.00 34.09 4.26
512 513 2.746279 TCTTGGGTTGGAAAGAGCAA 57.254 45.000 0.00 0.00 0.00 3.91
513 514 3.025322 TCTTGGGTTGGAAAGAGCAAA 57.975 42.857 0.00 0.00 0.00 3.68
514 515 2.958355 TCTTGGGTTGGAAAGAGCAAAG 59.042 45.455 0.00 0.00 0.00 2.77
515 516 2.746279 TGGGTTGGAAAGAGCAAAGA 57.254 45.000 0.00 0.00 0.00 2.52
570 571 5.982516 CAGTAATTAGCAGAGAAGAGCGATT 59.017 40.000 0.00 0.00 35.48 3.34
571 572 7.013369 TCAGTAATTAGCAGAGAAGAGCGATTA 59.987 37.037 0.00 0.00 35.48 1.75
604 605 4.176271 GCACAAAATGGACATAAAGCCTC 58.824 43.478 0.00 0.00 0.00 4.70
608 609 4.591321 AAATGGACATAAAGCCTCCTCA 57.409 40.909 0.00 0.00 0.00 3.86
611 612 4.591321 TGGACATAAAGCCTCCTCAATT 57.409 40.909 0.00 0.00 0.00 2.32
617 618 7.012799 GGACATAAAGCCTCCTCAATTTAGAAG 59.987 40.741 0.00 0.00 0.00 2.85
647 648 7.792364 TTCCCTCTGATTCTTTACTAGTTCA 57.208 36.000 0.00 0.00 0.00 3.18
648 649 7.792364 TCCCTCTGATTCTTTACTAGTTCAA 57.208 36.000 0.00 0.00 0.00 2.69
649 650 8.380742 TCCCTCTGATTCTTTACTAGTTCAAT 57.619 34.615 0.00 0.00 0.00 2.57
650 651 8.478877 TCCCTCTGATTCTTTACTAGTTCAATC 58.521 37.037 0.00 4.96 0.00 2.67
651 652 8.482128 CCCTCTGATTCTTTACTAGTTCAATCT 58.518 37.037 0.00 0.00 0.00 2.40
652 653 9.883142 CCTCTGATTCTTTACTAGTTCAATCTT 57.117 33.333 0.00 0.00 0.00 2.40
658 659 9.793259 ATTCTTTACTAGTTCAATCTTTGACCA 57.207 29.630 0.00 0.00 39.87 4.02
659 660 9.621629 TTCTTTACTAGTTCAATCTTTGACCAA 57.378 29.630 0.00 0.00 39.87 3.67
660 661 9.793259 TCTTTACTAGTTCAATCTTTGACCAAT 57.207 29.630 0.00 0.00 39.87 3.16
714 715 4.161942 CAGGAAATTGGCACCATTGGATTA 59.838 41.667 10.37 0.00 0.00 1.75
726 727 7.375053 GCACCATTGGATTAAACACTTTCTTA 58.625 34.615 10.37 0.00 0.00 2.10
729 730 9.308000 ACCATTGGATTAAACACTTTCTTATGA 57.692 29.630 10.37 0.00 0.00 2.15
749 750 5.845391 TGATCGTGATCACATAACCACTA 57.155 39.130 24.93 0.00 42.42 2.74
789 790 7.494298 TGGAAAATTTAGGTTGAAGTTCAAAGC 59.506 33.333 19.63 13.00 38.22 3.51
805 806 3.054878 CAAAGCTGGACAGTGAAAATGC 58.945 45.455 0.00 0.00 33.50 3.56
806 807 0.877071 AGCTGGACAGTGAAAATGCG 59.123 50.000 0.00 0.00 33.50 4.73
817 818 2.730069 TGAAAATGCGCTTCACACTTG 58.270 42.857 9.73 0.00 0.00 3.16
823 824 0.380378 GCGCTTCACACTTGGAAACA 59.620 50.000 0.00 0.00 39.83 2.83
824 825 1.597937 GCGCTTCACACTTGGAAACAG 60.598 52.381 0.00 0.00 44.54 3.16
842 843 8.223386 TGGAAACAGAGAGGCACTAAATTAGTG 61.223 40.741 24.48 24.48 46.61 2.74
877 883 2.502947 AGCACTGGAGCACATCTAATCA 59.497 45.455 0.00 0.00 36.85 2.57
885 891 5.604231 TGGAGCACATCTAATCACCTATTCT 59.396 40.000 0.00 0.00 0.00 2.40
925 931 8.200120 TGTCTAATCCAGATTACTGTGATTCAG 58.800 37.037 0.00 0.00 40.64 3.02
957 963 7.260387 TGGTACAATATGACTCCCTGTTAAA 57.740 36.000 0.00 0.00 31.92 1.52
960 966 6.759497 ACAATATGACTCCCTGTTAAAAGC 57.241 37.500 0.00 0.00 0.00 3.51
965 971 0.704664 CTCCCTGTTAAAAGCCCCCT 59.295 55.000 0.00 0.00 0.00 4.79
966 972 0.702316 TCCCTGTTAAAAGCCCCCTC 59.298 55.000 0.00 0.00 0.00 4.30
970 976 2.562738 CCTGTTAAAAGCCCCCTCTTTG 59.437 50.000 0.00 0.00 36.49 2.77
1049 1058 0.393537 ATACCACCAGAGCTTGCTGC 60.394 55.000 0.00 0.00 43.29 5.25
1070 1079 4.779733 GGTCCTCCTCCGCCTCCA 62.780 72.222 0.00 0.00 0.00 3.86
1086 1095 2.665000 CATGCCCACTCTGACCGT 59.335 61.111 0.00 0.00 0.00 4.83
1087 1096 1.742880 CATGCCCACTCTGACCGTG 60.743 63.158 0.00 0.00 0.00 4.94
1173 1182 0.253160 TGCCCTGGTTCATACTCCCT 60.253 55.000 0.00 0.00 0.00 4.20
1214 1223 0.995024 CCCCACAGTGAATCCTTCCT 59.005 55.000 0.62 0.00 0.00 3.36
1229 1238 1.131303 TTCCTGATCCCCAACGGTGT 61.131 55.000 0.00 0.00 0.00 4.16
1270 1279 1.024271 TGAGTGGCTTGTCTTTGCAC 58.976 50.000 0.00 0.00 0.00 4.57
1306 1315 3.996921 ACCTCGTAGACACCTTCTCTA 57.003 47.619 0.00 0.00 35.55 2.43
1346 1355 2.011947 TGACCTAGACATGTACGACCG 58.988 52.381 0.00 0.00 0.00 4.79
1386 1395 5.571784 AAGTTATCAATGGTCACAGCATG 57.428 39.130 0.00 0.00 46.00 4.06
1405 1414 2.412870 TGTGCTACATTTGTCTGGACG 58.587 47.619 0.00 0.00 0.00 4.79
1408 1417 1.732259 GCTACATTTGTCTGGACGTGG 59.268 52.381 0.00 0.00 0.00 4.94
1412 1421 2.224523 ACATTTGTCTGGACGTGGATGT 60.225 45.455 0.00 2.06 0.00 3.06
1438 1447 7.962964 ACCATGTCAATATACAAGGTAATCG 57.037 36.000 4.13 0.00 46.64 3.34
1448 1457 2.037251 ACAAGGTAATCGTGTGCTCAGT 59.963 45.455 0.00 0.00 36.74 3.41
1461 1470 0.888285 GCTCAGTGCTCCTTGTTGCT 60.888 55.000 0.00 0.00 38.95 3.91
1474 1483 0.817229 TGTTGCTGCCATCGTTGACA 60.817 50.000 0.00 0.00 0.00 3.58
1476 1485 0.804364 TTGCTGCCATCGTTGACATC 59.196 50.000 0.00 0.00 0.00 3.06
1482 1491 0.106708 CCATCGTTGACATCGGGGAT 59.893 55.000 6.10 0.00 0.00 3.85
1555 1564 1.889530 GCTTGGCTACGACAGGTCCT 61.890 60.000 0.00 0.00 0.00 3.85
1572 1581 6.125029 CAGGTCCTTTGACATAATTCTCCAT 58.875 40.000 0.00 0.00 43.65 3.41
1589 1598 0.524862 CATGGAGGCAAGTTGCTCAC 59.475 55.000 26.16 16.36 44.28 3.51
1590 1599 0.957395 ATGGAGGCAAGTTGCTCACG 60.957 55.000 26.16 0.00 44.28 4.35
1613 1622 3.370840 TGATGGATGGAGGAACCTTTG 57.629 47.619 0.00 0.00 39.86 2.77
1681 1690 1.372128 CGGATCGAGCGCATCATCA 60.372 57.895 11.47 0.00 0.00 3.07
1725 1734 4.995058 TTCCCGGGTGGCCTCCTT 62.995 66.667 22.86 0.00 0.00 3.36
1794 1803 1.942657 CGTGGGACAATCTATGGCAAG 59.057 52.381 0.00 0.00 44.16 4.01
1795 1804 1.678101 GTGGGACAATCTATGGCAAGC 59.322 52.381 0.00 0.00 44.16 4.01
1805 1814 2.853542 TGGCAAGCCACCTGAGGA 60.854 61.111 10.24 0.00 41.89 3.71
1808 1817 1.228245 GCAAGCCACCTGAGGACAA 60.228 57.895 4.99 0.00 0.00 3.18
1816 1825 1.301716 CCTGAGGACAACCACACCG 60.302 63.158 0.00 0.00 38.94 4.94
1903 1912 1.216710 GTTGAGAGGAGGAGCGTGG 59.783 63.158 0.00 0.00 0.00 4.94
1958 1967 1.287730 CTCCAAGTCTGTCTGTGCGC 61.288 60.000 0.00 0.00 0.00 6.09
2004 2013 2.831333 CATCTTCTTCCTGGATGACGG 58.169 52.381 11.48 8.18 39.12 4.79
2007 2016 1.198094 TTCTTCCTGGATGACGGCCA 61.198 55.000 11.48 0.00 0.00 5.36
2089 2098 1.378646 TGATGAGTCGGTCCGCTCT 60.379 57.895 25.72 18.24 33.64 4.09
2113 2122 2.418746 GCTTCCTAGAGGATCGTGCAAA 60.419 50.000 0.00 0.00 44.98 3.68
2159 2168 0.764890 TTTCCCTCGGGGCTGATATG 59.235 55.000 0.00 0.00 43.94 1.78
2161 2170 0.105194 TCCCTCGGGGCTGATATGAA 60.105 55.000 0.00 0.00 43.94 2.57
2163 2172 1.352352 CCCTCGGGGCTGATATGAATT 59.648 52.381 0.00 0.00 35.35 2.17
2181 2190 6.198650 TGAATTTGTTCCTGACATATGCAG 57.801 37.500 15.92 15.92 38.26 4.41
2191 2200 4.262335 CCTGACATATGCAGATCAGTGCTA 60.262 45.833 21.45 0.21 44.32 3.49
2195 2204 4.202336 ACATATGCAGATCAGTGCTAGCTT 60.202 41.667 17.23 0.92 44.32 3.74
2197 2206 3.170791 TGCAGATCAGTGCTAGCTTAC 57.829 47.619 17.23 6.69 44.32 2.34
2206 2215 3.862267 CAGTGCTAGCTTACTACAAGCAG 59.138 47.826 17.23 7.61 45.30 4.24
2208 2217 1.855360 GCTAGCTTACTACAAGCAGCG 59.145 52.381 7.70 0.98 45.30 5.18
2235 2244 1.720316 CTGATGATCGCTGAATCGCTC 59.280 52.381 0.00 0.00 0.00 5.03
2253 2262 3.183172 CGCTCCGTTGTCAATCAGATATG 59.817 47.826 0.00 0.00 0.00 1.78
2255 2264 4.572389 GCTCCGTTGTCAATCAGATATGTT 59.428 41.667 0.00 0.00 0.00 2.71
2256 2265 5.277058 GCTCCGTTGTCAATCAGATATGTTC 60.277 44.000 0.00 0.00 0.00 3.18
2258 2267 6.406370 TCCGTTGTCAATCAGATATGTTCTT 58.594 36.000 0.00 0.00 29.93 2.52
2259 2268 6.535150 TCCGTTGTCAATCAGATATGTTCTTC 59.465 38.462 0.00 0.00 29.93 2.87
2260 2269 6.313658 CCGTTGTCAATCAGATATGTTCTTCA 59.686 38.462 0.00 0.00 29.93 3.02
2261 2270 7.397194 CGTTGTCAATCAGATATGTTCTTCAG 58.603 38.462 0.00 0.00 29.93 3.02
2262 2271 7.276438 CGTTGTCAATCAGATATGTTCTTCAGA 59.724 37.037 0.00 0.00 29.93 3.27
2263 2272 8.939929 GTTGTCAATCAGATATGTTCTTCAGAA 58.060 33.333 0.00 0.00 29.93 3.02
2265 2274 9.106070 TGTCAATCAGATATGTTCTTCAGAATG 57.894 33.333 0.00 0.00 36.33 2.67
2266 2275 9.107177 GTCAATCAGATATGTTCTTCAGAATGT 57.893 33.333 0.00 0.00 36.33 2.71
2267 2276 9.322773 TCAATCAGATATGTTCTTCAGAATGTC 57.677 33.333 0.00 0.00 36.33 3.06
2283 2300 8.344446 TCAGAATGTCATTTGATTCAGAATGT 57.656 30.769 0.00 0.00 35.30 2.71
2313 2331 5.813672 TCTGTAAGTTTTGACAGCGTTTACT 59.186 36.000 0.16 0.00 42.35 2.24
2346 2365 7.649702 TCCTTCTTCCTGAGTAGATATCCTA 57.350 40.000 0.00 0.00 0.00 2.94
2387 2406 0.318275 GTAGCGGCTGAGAGATTCCG 60.318 60.000 13.86 0.00 44.29 4.30
2416 2435 1.339929 GTGGGTGGCGTTGAAGATTTT 59.660 47.619 0.00 0.00 0.00 1.82
2442 2462 8.813951 TGATGATCTAGAATACTGAAGCATCAT 58.186 33.333 0.00 0.00 38.52 2.45
2449 2469 7.187244 AGAATACTGAAGCATCATGAATTCG 57.813 36.000 0.00 4.67 35.32 3.34
2451 2471 6.932356 ATACTGAAGCATCATGAATTCGTT 57.068 33.333 0.00 0.00 34.37 3.85
2454 2474 3.190953 TGAAGCATCATGAATTCGTTGCA 59.809 39.130 20.92 0.93 32.66 4.08
2485 2505 5.785599 GTCACATTTCAATTCGAAAGACTCG 59.214 40.000 0.00 0.00 46.57 4.18
2489 2509 6.128795 ACATTTCAATTCGAAAGACTCGTCTC 60.129 38.462 0.00 0.00 46.57 3.36
2490 2510 5.926542 ATTTCAATTCGAAAGACTCGTCTCA 59.073 36.000 0.00 0.00 46.57 3.27
2513 2535 6.148315 TCACACAGTTTGCTTGATCTAGAATG 59.852 38.462 8.45 0.00 0.00 2.67
2520 2542 4.773013 TGCTTGATCTAGAATGCATGTCA 58.227 39.130 8.45 0.00 0.00 3.58
2521 2543 4.814771 TGCTTGATCTAGAATGCATGTCAG 59.185 41.667 8.45 0.00 0.00 3.51
2522 2544 4.815308 GCTTGATCTAGAATGCATGTCAGT 59.185 41.667 8.45 0.00 0.00 3.41
2523 2545 5.296283 GCTTGATCTAGAATGCATGTCAGTT 59.704 40.000 8.45 0.00 0.00 3.16
2524 2546 6.511444 GCTTGATCTAGAATGCATGTCAGTTC 60.511 42.308 8.45 3.22 0.00 3.01
2525 2547 6.231258 TGATCTAGAATGCATGTCAGTTCT 57.769 37.500 0.00 1.03 35.32 3.01
2548 2629 8.335256 TCTTAAAAATTCTGAAAAGTTGACGC 57.665 30.769 0.00 0.00 0.00 5.19
2549 2630 7.971168 TCTTAAAAATTCTGAAAAGTTGACGCA 59.029 29.630 0.00 0.00 0.00 5.24
2551 2632 6.515043 AAAATTCTGAAAAGTTGACGCATG 57.485 33.333 0.00 0.00 0.00 4.06
2552 2633 4.836125 ATTCTGAAAAGTTGACGCATGT 57.164 36.364 0.00 0.00 0.00 3.21
2553 2634 4.630894 TTCTGAAAAGTTGACGCATGTT 57.369 36.364 0.00 0.00 0.00 2.71
2554 2635 3.951306 TCTGAAAAGTTGACGCATGTTG 58.049 40.909 0.00 0.00 0.00 3.33
2555 2636 2.458951 TGAAAAGTTGACGCATGTTGC 58.541 42.857 0.00 0.00 40.69 4.17
2556 2637 2.098934 TGAAAAGTTGACGCATGTTGCT 59.901 40.909 0.00 0.00 42.25 3.91
2558 2639 3.980646 AAAGTTGACGCATGTTGCTAA 57.019 38.095 0.00 0.00 42.25 3.09
2559 2640 2.969443 AGTTGACGCATGTTGCTAAC 57.031 45.000 0.00 1.52 42.25 2.34
2560 2641 2.217750 AGTTGACGCATGTTGCTAACA 58.782 42.857 0.00 4.56 46.94 2.41
2611 2767 9.558648 AAAACTTGCAAATTTGAATTTTGAGAC 57.441 25.926 22.31 0.55 36.52 3.36
2665 2821 5.477496 ATCAGACGCTGATCATACAGGGAA 61.477 45.833 16.96 3.31 46.83 3.97
2697 2853 3.502595 CCCTGATGCTCAATAATGCAGAG 59.497 47.826 0.00 0.00 42.74 3.35
2833 2995 0.685458 ACAACCGCCTATACGAGGGT 60.685 55.000 0.00 0.00 46.81 4.34
2863 3025 5.175388 AGTTACCTAAAACTAGGGGCAAG 57.825 43.478 3.35 0.00 41.51 4.01
2991 3153 2.786495 CCAGCGGGTGTAGCTCGAT 61.786 63.158 6.43 0.00 45.67 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.462047 GGGCTGGAGGTATCGTGTTG 60.462 60.000 0.00 0.00 0.00 3.33
1 2 0.907704 TGGGCTGGAGGTATCGTGTT 60.908 55.000 0.00 0.00 0.00 3.32
2 3 1.305802 TGGGCTGGAGGTATCGTGT 60.306 57.895 0.00 0.00 0.00 4.49
3 4 1.443407 CTGGGCTGGAGGTATCGTG 59.557 63.158 0.00 0.00 0.00 4.35
4 5 2.435693 GCTGGGCTGGAGGTATCGT 61.436 63.158 0.00 0.00 0.00 3.73
5 6 2.423446 GCTGGGCTGGAGGTATCG 59.577 66.667 0.00 0.00 0.00 2.92
6 7 1.147153 GTGCTGGGCTGGAGGTATC 59.853 63.158 0.00 0.00 0.00 2.24
7 8 1.616327 TGTGCTGGGCTGGAGGTAT 60.616 57.895 0.00 0.00 0.00 2.73
8 9 2.203922 TGTGCTGGGCTGGAGGTA 60.204 61.111 0.00 0.00 0.00 3.08
9 10 3.958860 GTGTGCTGGGCTGGAGGT 61.959 66.667 0.00 0.00 0.00 3.85
10 11 3.957586 TGTGTGCTGGGCTGGAGG 61.958 66.667 0.00 0.00 0.00 4.30
11 12 2.670934 GTGTGTGCTGGGCTGGAG 60.671 66.667 0.00 0.00 0.00 3.86
12 13 4.269523 GGTGTGTGCTGGGCTGGA 62.270 66.667 0.00 0.00 0.00 3.86
18 19 3.653009 CTGTGCGGTGTGTGCTGG 61.653 66.667 0.00 0.00 0.00 4.85
19 20 3.653009 CCTGTGCGGTGTGTGCTG 61.653 66.667 0.00 0.00 0.00 4.41
22 23 3.529341 TAGGCCTGTGCGGTGTGTG 62.529 63.158 17.99 0.00 38.85 3.82
23 24 2.124507 ATTAGGCCTGTGCGGTGTGT 62.125 55.000 17.99 0.00 38.85 3.72
24 25 0.960364 AATTAGGCCTGTGCGGTGTG 60.960 55.000 17.99 0.00 38.85 3.82
25 26 0.676782 GAATTAGGCCTGTGCGGTGT 60.677 55.000 17.99 0.00 38.85 4.16
26 27 1.376609 GGAATTAGGCCTGTGCGGTG 61.377 60.000 17.99 0.00 38.85 4.94
27 28 1.077716 GGAATTAGGCCTGTGCGGT 60.078 57.895 17.99 0.00 38.85 5.68
28 29 2.180204 CGGAATTAGGCCTGTGCGG 61.180 63.158 17.99 3.17 38.85 5.69
29 30 2.823829 GCGGAATTAGGCCTGTGCG 61.824 63.158 17.99 18.21 38.85 5.34
30 31 1.032114 AAGCGGAATTAGGCCTGTGC 61.032 55.000 17.99 9.96 0.00 4.57
31 32 1.017387 GAAGCGGAATTAGGCCTGTG 58.983 55.000 17.99 0.00 0.00 3.66
32 33 0.107165 GGAAGCGGAATTAGGCCTGT 60.107 55.000 17.99 0.00 0.00 4.00
33 34 0.107214 TGGAAGCGGAATTAGGCCTG 60.107 55.000 17.99 0.00 0.00 4.85
34 35 0.107165 GTGGAAGCGGAATTAGGCCT 60.107 55.000 11.78 11.78 0.00 5.19
35 36 0.393808 TGTGGAAGCGGAATTAGGCC 60.394 55.000 0.00 0.00 0.00 5.19
36 37 1.017387 CTGTGGAAGCGGAATTAGGC 58.983 55.000 0.00 0.00 0.00 3.93
37 38 1.017387 GCTGTGGAAGCGGAATTAGG 58.983 55.000 0.00 0.00 43.45 2.69
47 48 2.662309 AGCAAATGGGCTGTGGAAG 58.338 52.632 0.00 0.00 43.89 3.46
48 49 4.950200 AGCAAATGGGCTGTGGAA 57.050 50.000 0.00 0.00 43.89 3.53
55 56 0.322648 AAAGGCTTCAGCAAATGGGC 59.677 50.000 0.00 0.00 44.36 5.36
56 57 1.619827 TGAAAGGCTTCAGCAAATGGG 59.380 47.619 0.00 0.00 44.36 4.00
57 58 2.036217 TGTGAAAGGCTTCAGCAAATGG 59.964 45.455 0.00 0.00 42.27 3.16
58 59 3.054878 GTGTGAAAGGCTTCAGCAAATG 58.945 45.455 0.00 0.00 42.27 2.32
59 60 2.694628 TGTGTGAAAGGCTTCAGCAAAT 59.305 40.909 0.00 0.00 42.27 2.32
60 61 2.098614 TGTGTGAAAGGCTTCAGCAAA 58.901 42.857 0.00 0.00 42.27 3.68
61 62 1.761449 TGTGTGAAAGGCTTCAGCAA 58.239 45.000 0.00 0.00 42.27 3.91
62 63 1.405105 GTTGTGTGAAAGGCTTCAGCA 59.595 47.619 0.00 0.00 42.27 4.41
63 64 1.405105 TGTTGTGTGAAAGGCTTCAGC 59.595 47.619 0.00 0.00 42.27 4.26
64 65 2.945008 TCTGTTGTGTGAAAGGCTTCAG 59.055 45.455 0.00 0.84 42.27 3.02
65 66 2.682856 GTCTGTTGTGTGAAAGGCTTCA 59.317 45.455 0.00 0.00 39.30 3.02
66 67 2.682856 TGTCTGTTGTGTGAAAGGCTTC 59.317 45.455 0.00 0.00 0.00 3.86
67 68 2.722094 TGTCTGTTGTGTGAAAGGCTT 58.278 42.857 0.00 0.00 0.00 4.35
68 69 2.418368 TGTCTGTTGTGTGAAAGGCT 57.582 45.000 0.00 0.00 0.00 4.58
69 70 2.479560 GGTTGTCTGTTGTGTGAAAGGC 60.480 50.000 0.00 0.00 0.00 4.35
70 71 2.223249 CGGTTGTCTGTTGTGTGAAAGG 60.223 50.000 0.00 0.00 0.00 3.11
71 72 2.791158 GCGGTTGTCTGTTGTGTGAAAG 60.791 50.000 0.00 0.00 0.00 2.62
72 73 1.131504 GCGGTTGTCTGTTGTGTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
73 74 0.730265 GCGGTTGTCTGTTGTGTGAA 59.270 50.000 0.00 0.00 0.00 3.18
74 75 0.391793 TGCGGTTGTCTGTTGTGTGA 60.392 50.000 0.00 0.00 0.00 3.58
75 76 0.248054 GTGCGGTTGTCTGTTGTGTG 60.248 55.000 0.00 0.00 0.00 3.82
76 77 0.675208 TGTGCGGTTGTCTGTTGTGT 60.675 50.000 0.00 0.00 0.00 3.72
77 78 0.248054 GTGTGCGGTTGTCTGTTGTG 60.248 55.000 0.00 0.00 0.00 3.33
78 79 0.392461 AGTGTGCGGTTGTCTGTTGT 60.392 50.000 0.00 0.00 0.00 3.32
79 80 0.732571 AAGTGTGCGGTTGTCTGTTG 59.267 50.000 0.00 0.00 0.00 3.33
80 81 1.400494 GAAAGTGTGCGGTTGTCTGTT 59.600 47.619 0.00 0.00 0.00 3.16
81 82 1.014352 GAAAGTGTGCGGTTGTCTGT 58.986 50.000 0.00 0.00 0.00 3.41
82 83 1.261619 GAGAAAGTGTGCGGTTGTCTG 59.738 52.381 0.00 0.00 0.00 3.51
83 84 1.134521 TGAGAAAGTGTGCGGTTGTCT 60.135 47.619 0.00 0.00 0.00 3.41
84 85 1.295792 TGAGAAAGTGTGCGGTTGTC 58.704 50.000 0.00 0.00 0.00 3.18
85 86 1.745232 TTGAGAAAGTGTGCGGTTGT 58.255 45.000 0.00 0.00 0.00 3.32
86 87 2.842208 TTTGAGAAAGTGTGCGGTTG 57.158 45.000 0.00 0.00 0.00 3.77
87 88 3.859411 TTTTTGAGAAAGTGTGCGGTT 57.141 38.095 0.00 0.00 0.00 4.44
112 113 1.542030 TGTGTGCGGTTGTCTGTTTTT 59.458 42.857 0.00 0.00 0.00 1.94
113 114 1.135517 GTGTGTGCGGTTGTCTGTTTT 60.136 47.619 0.00 0.00 0.00 2.43
114 115 0.450184 GTGTGTGCGGTTGTCTGTTT 59.550 50.000 0.00 0.00 0.00 2.83
115 116 1.373590 GGTGTGTGCGGTTGTCTGTT 61.374 55.000 0.00 0.00 0.00 3.16
116 117 1.817941 GGTGTGTGCGGTTGTCTGT 60.818 57.895 0.00 0.00 0.00 3.41
117 118 2.542907 GGGTGTGTGCGGTTGTCTG 61.543 63.158 0.00 0.00 0.00 3.51
118 119 2.203153 GGGTGTGTGCGGTTGTCT 60.203 61.111 0.00 0.00 0.00 3.41
119 120 2.203153 AGGGTGTGTGCGGTTGTC 60.203 61.111 0.00 0.00 0.00 3.18
120 121 2.203153 GAGGGTGTGTGCGGTTGT 60.203 61.111 0.00 0.00 0.00 3.32
121 122 1.380403 TTTGAGGGTGTGTGCGGTTG 61.380 55.000 0.00 0.00 0.00 3.77
122 123 0.681564 TTTTGAGGGTGTGTGCGGTT 60.682 50.000 0.00 0.00 0.00 4.44
123 124 0.681564 TTTTTGAGGGTGTGTGCGGT 60.682 50.000 0.00 0.00 0.00 5.68
124 125 2.111162 TTTTTGAGGGTGTGTGCGG 58.889 52.632 0.00 0.00 0.00 5.69
139 140 9.923786 GCGGTTGTCTGTTTTATTTTTATTTTT 57.076 25.926 0.00 0.00 0.00 1.94
140 141 9.099454 TGCGGTTGTCTGTTTTATTTTTATTTT 57.901 25.926 0.00 0.00 0.00 1.82
141 142 8.544597 GTGCGGTTGTCTGTTTTATTTTTATTT 58.455 29.630 0.00 0.00 0.00 1.40
142 143 7.096394 CGTGCGGTTGTCTGTTTTATTTTTATT 60.096 33.333 0.00 0.00 0.00 1.40
143 144 6.361214 CGTGCGGTTGTCTGTTTTATTTTTAT 59.639 34.615 0.00 0.00 0.00 1.40
144 145 5.681982 CGTGCGGTTGTCTGTTTTATTTTTA 59.318 36.000 0.00 0.00 0.00 1.52
145 146 4.501198 CGTGCGGTTGTCTGTTTTATTTTT 59.499 37.500 0.00 0.00 0.00 1.94
146 147 4.039032 CGTGCGGTTGTCTGTTTTATTTT 58.961 39.130 0.00 0.00 0.00 1.82
147 148 3.312973 TCGTGCGGTTGTCTGTTTTATTT 59.687 39.130 0.00 0.00 0.00 1.40
148 149 2.873472 TCGTGCGGTTGTCTGTTTTATT 59.127 40.909 0.00 0.00 0.00 1.40
149 150 2.485903 TCGTGCGGTTGTCTGTTTTAT 58.514 42.857 0.00 0.00 0.00 1.40
150 151 1.937278 TCGTGCGGTTGTCTGTTTTA 58.063 45.000 0.00 0.00 0.00 1.52
151 152 1.088306 TTCGTGCGGTTGTCTGTTTT 58.912 45.000 0.00 0.00 0.00 2.43
152 153 1.088306 TTTCGTGCGGTTGTCTGTTT 58.912 45.000 0.00 0.00 0.00 2.83
153 154 1.088306 TTTTCGTGCGGTTGTCTGTT 58.912 45.000 0.00 0.00 0.00 3.16
154 155 1.063469 CTTTTTCGTGCGGTTGTCTGT 59.937 47.619 0.00 0.00 0.00 3.41
155 156 1.329292 TCTTTTTCGTGCGGTTGTCTG 59.671 47.619 0.00 0.00 0.00 3.51
156 157 1.597663 CTCTTTTTCGTGCGGTTGTCT 59.402 47.619 0.00 0.00 0.00 3.41
157 158 1.595794 TCTCTTTTTCGTGCGGTTGTC 59.404 47.619 0.00 0.00 0.00 3.18
158 159 1.597663 CTCTCTTTTTCGTGCGGTTGT 59.402 47.619 0.00 0.00 0.00 3.32
159 160 1.660333 GCTCTCTTTTTCGTGCGGTTG 60.660 52.381 0.00 0.00 0.00 3.77
160 161 0.586802 GCTCTCTTTTTCGTGCGGTT 59.413 50.000 0.00 0.00 0.00 4.44
161 162 0.531974 TGCTCTCTTTTTCGTGCGGT 60.532 50.000 0.00 0.00 0.00 5.68
162 163 0.164647 CTGCTCTCTTTTTCGTGCGG 59.835 55.000 0.00 0.00 0.00 5.69
163 164 1.136502 GTCTGCTCTCTTTTTCGTGCG 60.137 52.381 0.00 0.00 0.00 5.34
164 165 1.867233 TGTCTGCTCTCTTTTTCGTGC 59.133 47.619 0.00 0.00 0.00 5.34
165 166 3.303395 GGTTGTCTGCTCTCTTTTTCGTG 60.303 47.826 0.00 0.00 0.00 4.35
166 167 2.872858 GGTTGTCTGCTCTCTTTTTCGT 59.127 45.455 0.00 0.00 0.00 3.85
167 168 2.096713 CGGTTGTCTGCTCTCTTTTTCG 60.097 50.000 0.00 0.00 0.00 3.46
168 169 2.349912 GCGGTTGTCTGCTCTCTTTTTC 60.350 50.000 0.00 0.00 42.20 2.29
169 170 1.604278 GCGGTTGTCTGCTCTCTTTTT 59.396 47.619 0.00 0.00 42.20 1.94
170 171 1.230324 GCGGTTGTCTGCTCTCTTTT 58.770 50.000 0.00 0.00 42.20 2.27
171 172 0.106708 TGCGGTTGTCTGCTCTCTTT 59.893 50.000 0.90 0.00 45.38 2.52
172 173 0.601311 GTGCGGTTGTCTGCTCTCTT 60.601 55.000 0.90 0.00 45.38 2.85
173 174 1.005630 GTGCGGTTGTCTGCTCTCT 60.006 57.895 0.90 0.00 45.38 3.10
174 175 2.375766 CGTGCGGTTGTCTGCTCTC 61.376 63.158 0.90 0.00 45.38 3.20
175 176 2.356313 CGTGCGGTTGTCTGCTCT 60.356 61.111 0.90 0.00 45.38 4.09
176 177 4.077188 GCGTGCGGTTGTCTGCTC 62.077 66.667 0.90 0.00 45.38 4.26
216 217 2.331805 CGTCACCGCCGATCTAGG 59.668 66.667 0.00 0.00 0.00 3.02
217 218 2.119147 CTCCGTCACCGCCGATCTAG 62.119 65.000 0.00 0.00 0.00 2.43
218 219 2.124612 TCCGTCACCGCCGATCTA 60.125 61.111 0.00 0.00 0.00 1.98
219 220 3.518998 CTCCGTCACCGCCGATCT 61.519 66.667 0.00 0.00 0.00 2.75
220 221 4.570663 CCTCCGTCACCGCCGATC 62.571 72.222 0.00 0.00 0.00 3.69
241 242 2.320339 CTAGGTTCCTCGACGGCGAC 62.320 65.000 10.67 6.59 42.51 5.19
242 243 2.046023 TAGGTTCCTCGACGGCGA 60.046 61.111 15.22 15.22 45.71 5.54
243 244 2.049475 CTCTAGGTTCCTCGACGGCG 62.049 65.000 2.87 2.87 39.35 6.46
244 245 1.726533 CCTCTAGGTTCCTCGACGGC 61.727 65.000 0.00 0.00 0.00 5.68
245 246 2.406205 CCTCTAGGTTCCTCGACGG 58.594 63.158 0.00 0.00 0.00 4.79
256 257 4.058817 GTCGATTTGGCATTACCTCTAGG 58.941 47.826 0.00 0.00 40.22 3.02
257 258 4.693283 TGTCGATTTGGCATTACCTCTAG 58.307 43.478 0.00 0.00 40.22 2.43
258 259 4.746535 TGTCGATTTGGCATTACCTCTA 57.253 40.909 0.00 0.00 40.22 2.43
259 260 3.627395 TGTCGATTTGGCATTACCTCT 57.373 42.857 0.00 0.00 40.22 3.69
260 261 6.560253 AATATGTCGATTTGGCATTACCTC 57.440 37.500 0.00 0.00 40.22 3.85
261 262 6.959639 AAATATGTCGATTTGGCATTACCT 57.040 33.333 0.00 0.00 40.22 3.08
262 263 7.920682 AGAAAAATATGTCGATTTGGCATTACC 59.079 33.333 0.00 0.00 39.84 2.85
263 264 8.856490 AGAAAAATATGTCGATTTGGCATTAC 57.144 30.769 0.00 0.00 0.00 1.89
264 265 8.134895 GGAGAAAAATATGTCGATTTGGCATTA 58.865 33.333 0.00 0.00 0.00 1.90
265 266 6.980397 GGAGAAAAATATGTCGATTTGGCATT 59.020 34.615 0.00 0.00 0.00 3.56
266 267 6.507023 GGAGAAAAATATGTCGATTTGGCAT 58.493 36.000 0.00 0.00 0.00 4.40
267 268 5.448496 CGGAGAAAAATATGTCGATTTGGCA 60.448 40.000 0.00 0.00 0.00 4.92
268 269 4.970003 CGGAGAAAAATATGTCGATTTGGC 59.030 41.667 0.00 0.00 0.00 4.52
269 270 5.510671 CCGGAGAAAAATATGTCGATTTGG 58.489 41.667 0.00 0.00 0.00 3.28
270 271 4.970003 GCCGGAGAAAAATATGTCGATTTG 59.030 41.667 5.05 0.00 0.00 2.32
271 272 4.638421 TGCCGGAGAAAAATATGTCGATTT 59.362 37.500 5.05 0.00 0.00 2.17
272 273 4.196193 TGCCGGAGAAAAATATGTCGATT 58.804 39.130 5.05 0.00 0.00 3.34
273 274 3.804036 TGCCGGAGAAAAATATGTCGAT 58.196 40.909 5.05 0.00 0.00 3.59
274 275 3.118920 TCTGCCGGAGAAAAATATGTCGA 60.119 43.478 5.05 0.00 0.00 4.20
275 276 3.001330 GTCTGCCGGAGAAAAATATGTCG 59.999 47.826 5.05 0.00 30.26 4.35
276 277 3.312697 GGTCTGCCGGAGAAAAATATGTC 59.687 47.826 5.05 0.00 30.26 3.06
277 278 3.279434 GGTCTGCCGGAGAAAAATATGT 58.721 45.455 5.05 0.00 30.26 2.29
278 279 3.278574 TGGTCTGCCGGAGAAAAATATG 58.721 45.455 5.05 0.00 37.67 1.78
279 280 3.545703 CTGGTCTGCCGGAGAAAAATAT 58.454 45.455 5.05 0.00 43.97 1.28
280 281 2.355716 CCTGGTCTGCCGGAGAAAAATA 60.356 50.000 5.05 0.00 43.97 1.40
281 282 1.614317 CCTGGTCTGCCGGAGAAAAAT 60.614 52.381 5.05 0.00 43.97 1.82
282 283 0.250727 CCTGGTCTGCCGGAGAAAAA 60.251 55.000 5.05 0.00 43.97 1.94
283 284 1.125093 TCCTGGTCTGCCGGAGAAAA 61.125 55.000 5.05 0.00 43.97 2.29
284 285 0.909610 ATCCTGGTCTGCCGGAGAAA 60.910 55.000 5.05 0.00 43.97 2.52
285 286 0.032515 TATCCTGGTCTGCCGGAGAA 60.033 55.000 5.05 0.00 43.97 2.87
286 287 0.468214 CTATCCTGGTCTGCCGGAGA 60.468 60.000 5.05 1.90 43.97 3.71
287 288 0.757188 ACTATCCTGGTCTGCCGGAG 60.757 60.000 5.05 0.00 43.97 4.63
288 289 0.325296 AACTATCCTGGTCTGCCGGA 60.325 55.000 5.05 0.00 43.97 5.14
289 290 0.541863 AAACTATCCTGGTCTGCCGG 59.458 55.000 0.00 0.00 40.89 6.13
290 291 2.093447 AGAAAACTATCCTGGTCTGCCG 60.093 50.000 0.00 0.00 37.67 5.69
291 292 3.198853 AGAGAAAACTATCCTGGTCTGCC 59.801 47.826 0.00 0.00 0.00 4.85
292 293 4.187694 CAGAGAAAACTATCCTGGTCTGC 58.812 47.826 0.00 0.00 0.00 4.26
293 294 4.764172 CCAGAGAAAACTATCCTGGTCTG 58.236 47.826 0.00 0.00 39.50 3.51
294 295 3.198853 GCCAGAGAAAACTATCCTGGTCT 59.801 47.826 0.00 0.00 44.58 3.85
295 296 3.536570 GCCAGAGAAAACTATCCTGGTC 58.463 50.000 0.00 0.00 44.58 4.02
296 297 2.239907 GGCCAGAGAAAACTATCCTGGT 59.760 50.000 0.00 0.00 44.58 4.00
297 298 2.743183 CGGCCAGAGAAAACTATCCTGG 60.743 54.545 2.24 0.00 45.31 4.45
298 299 2.555199 CGGCCAGAGAAAACTATCCTG 58.445 52.381 2.24 0.00 0.00 3.86
299 300 1.486726 CCGGCCAGAGAAAACTATCCT 59.513 52.381 2.24 0.00 0.00 3.24
300 301 1.209747 ACCGGCCAGAGAAAACTATCC 59.790 52.381 0.00 0.00 0.00 2.59
301 302 2.693267 ACCGGCCAGAGAAAACTATC 57.307 50.000 0.00 0.00 0.00 2.08
302 303 4.563140 TTAACCGGCCAGAGAAAACTAT 57.437 40.909 0.00 0.00 0.00 2.12
303 304 4.563140 ATTAACCGGCCAGAGAAAACTA 57.437 40.909 0.00 0.00 0.00 2.24
304 305 2.943036 TTAACCGGCCAGAGAAAACT 57.057 45.000 0.00 0.00 0.00 2.66
305 306 4.514781 AAATTAACCGGCCAGAGAAAAC 57.485 40.909 0.00 0.00 0.00 2.43
306 307 4.157105 GCTAAATTAACCGGCCAGAGAAAA 59.843 41.667 0.00 0.00 0.00 2.29
307 308 3.692593 GCTAAATTAACCGGCCAGAGAAA 59.307 43.478 0.00 0.00 0.00 2.52
308 309 3.275999 GCTAAATTAACCGGCCAGAGAA 58.724 45.455 0.00 0.00 0.00 2.87
309 310 2.740580 CGCTAAATTAACCGGCCAGAGA 60.741 50.000 0.00 0.00 0.00 3.10
310 311 1.597663 CGCTAAATTAACCGGCCAGAG 59.402 52.381 0.00 0.00 0.00 3.35
311 312 1.658994 CGCTAAATTAACCGGCCAGA 58.341 50.000 0.00 0.00 0.00 3.86
312 313 0.028902 GCGCTAAATTAACCGGCCAG 59.971 55.000 0.00 0.00 0.00 4.85
313 314 1.378124 GGCGCTAAATTAACCGGCCA 61.378 55.000 7.64 0.00 39.88 5.36
314 315 1.357690 GGCGCTAAATTAACCGGCC 59.642 57.895 7.64 0.00 39.88 6.13
315 316 1.010462 CGGCGCTAAATTAACCGGC 60.010 57.895 7.64 8.50 40.18 6.13
318 319 4.799419 TTATGACGGCGCTAAATTAACC 57.201 40.909 6.90 0.00 0.00 2.85
319 320 4.611366 GCATTATGACGGCGCTAAATTAAC 59.389 41.667 6.90 0.00 0.00 2.01
320 321 4.513692 AGCATTATGACGGCGCTAAATTAA 59.486 37.500 6.90 1.16 0.00 1.40
321 322 4.062293 AGCATTATGACGGCGCTAAATTA 58.938 39.130 6.90 0.00 0.00 1.40
322 323 2.878406 AGCATTATGACGGCGCTAAATT 59.122 40.909 6.90 0.00 0.00 1.82
323 324 2.224079 CAGCATTATGACGGCGCTAAAT 59.776 45.455 6.90 0.00 0.00 1.40
324 325 1.597195 CAGCATTATGACGGCGCTAAA 59.403 47.619 6.90 0.00 0.00 1.85
325 326 1.217001 CAGCATTATGACGGCGCTAA 58.783 50.000 6.90 2.97 0.00 3.09
326 327 1.221466 GCAGCATTATGACGGCGCTA 61.221 55.000 6.90 0.00 0.00 4.26
327 328 2.537560 GCAGCATTATGACGGCGCT 61.538 57.895 6.90 0.00 0.00 5.92
328 329 2.051882 GCAGCATTATGACGGCGC 60.052 61.111 6.90 0.00 0.00 6.53
329 330 1.277739 CTGCAGCATTATGACGGCG 59.722 57.895 4.80 4.80 0.00 6.46
330 331 1.009222 GCTGCAGCATTATGACGGC 60.009 57.895 33.36 1.56 41.59 5.68
331 332 0.585357 GAGCTGCAGCATTATGACGG 59.415 55.000 38.24 0.00 45.16 4.79
332 333 0.231534 CGAGCTGCAGCATTATGACG 59.768 55.000 38.24 24.68 45.16 4.35
333 334 1.293924 ACGAGCTGCAGCATTATGAC 58.706 50.000 38.24 18.54 45.16 3.06
334 335 2.028420 AACGAGCTGCAGCATTATGA 57.972 45.000 38.24 0.00 45.16 2.15
335 336 2.838386 AAACGAGCTGCAGCATTATG 57.162 45.000 38.24 23.92 45.16 1.90
336 337 2.733227 GCAAAACGAGCTGCAGCATTAT 60.733 45.455 38.24 19.88 45.16 1.28
337 338 1.401409 GCAAAACGAGCTGCAGCATTA 60.401 47.619 38.24 0.00 45.16 1.90
338 339 0.665369 GCAAAACGAGCTGCAGCATT 60.665 50.000 38.24 25.82 45.16 3.56
339 340 1.080974 GCAAAACGAGCTGCAGCAT 60.081 52.632 38.24 23.95 45.16 3.79
340 341 2.188829 AGCAAAACGAGCTGCAGCA 61.189 52.632 38.24 0.00 45.16 4.41
341 342 2.641559 AGCAAAACGAGCTGCAGC 59.358 55.556 31.53 31.53 41.61 5.25
346 347 2.555547 GGTGGCAGCAAAACGAGCT 61.556 57.895 12.58 0.00 44.62 4.09
347 348 1.234615 TAGGTGGCAGCAAAACGAGC 61.235 55.000 20.04 0.00 0.00 5.03
348 349 0.798776 CTAGGTGGCAGCAAAACGAG 59.201 55.000 20.04 2.28 0.00 4.18
349 350 0.605319 CCTAGGTGGCAGCAAAACGA 60.605 55.000 20.04 0.00 0.00 3.85
350 351 1.586154 CCCTAGGTGGCAGCAAAACG 61.586 60.000 20.04 1.10 0.00 3.60
351 352 0.539669 ACCCTAGGTGGCAGCAAAAC 60.540 55.000 20.04 0.00 32.98 2.43
352 353 0.187361 AACCCTAGGTGGCAGCAAAA 59.813 50.000 20.04 2.85 35.34 2.44
353 354 0.187361 AAACCCTAGGTGGCAGCAAA 59.813 50.000 20.04 5.51 35.34 3.68
354 355 0.539438 CAAACCCTAGGTGGCAGCAA 60.539 55.000 20.04 0.00 35.34 3.91
355 356 1.074775 CAAACCCTAGGTGGCAGCA 59.925 57.895 20.04 4.11 35.34 4.41
356 357 0.034089 ATCAAACCCTAGGTGGCAGC 60.034 55.000 9.02 9.02 35.34 5.25
357 358 2.493278 CAAATCAAACCCTAGGTGGCAG 59.507 50.000 8.29 0.00 35.34 4.85
358 359 2.109128 TCAAATCAAACCCTAGGTGGCA 59.891 45.455 8.29 0.00 35.34 4.92
359 360 2.802719 TCAAATCAAACCCTAGGTGGC 58.197 47.619 8.29 0.00 35.34 5.01
360 361 3.954258 GGATCAAATCAAACCCTAGGTGG 59.046 47.826 8.29 0.00 35.34 4.61
361 362 3.954258 GGGATCAAATCAAACCCTAGGTG 59.046 47.826 8.29 0.00 35.34 4.00
362 363 3.596046 TGGGATCAAATCAAACCCTAGGT 59.404 43.478 8.29 0.00 40.98 3.08
363 364 4.079787 TCTGGGATCAAATCAAACCCTAGG 60.080 45.833 0.06 0.06 40.98 3.02
364 365 5.116084 TCTGGGATCAAATCAAACCCTAG 57.884 43.478 0.00 0.00 40.98 3.02
365 366 5.732331 ATCTGGGATCAAATCAAACCCTA 57.268 39.130 0.00 0.00 40.98 3.53
366 367 4.614967 ATCTGGGATCAAATCAAACCCT 57.385 40.909 0.00 0.00 40.98 4.34
367 368 6.573434 GTTAATCTGGGATCAAATCAAACCC 58.427 40.000 0.00 0.00 40.79 4.11
368 369 6.265577 CGTTAATCTGGGATCAAATCAAACC 58.734 40.000 0.00 0.00 0.00 3.27
369 370 6.265577 CCGTTAATCTGGGATCAAATCAAAC 58.734 40.000 0.00 0.00 0.00 2.93
370 371 6.449635 CCGTTAATCTGGGATCAAATCAAA 57.550 37.500 0.00 0.00 0.00 2.69
382 383 2.027561 TCTGTTCCACCCGTTAATCTGG 60.028 50.000 0.00 0.00 0.00 3.86
383 384 3.000727 GTCTGTTCCACCCGTTAATCTG 58.999 50.000 0.00 0.00 0.00 2.90
384 385 2.353406 CGTCTGTTCCACCCGTTAATCT 60.353 50.000 0.00 0.00 0.00 2.40
385 386 1.997606 CGTCTGTTCCACCCGTTAATC 59.002 52.381 0.00 0.00 0.00 1.75
386 387 1.338389 CCGTCTGTTCCACCCGTTAAT 60.338 52.381 0.00 0.00 0.00 1.40
387 388 0.033781 CCGTCTGTTCCACCCGTTAA 59.966 55.000 0.00 0.00 0.00 2.01
388 389 0.827089 TCCGTCTGTTCCACCCGTTA 60.827 55.000 0.00 0.00 0.00 3.18
389 390 2.135581 TCCGTCTGTTCCACCCGTT 61.136 57.895 0.00 0.00 0.00 4.44
390 391 2.522436 TCCGTCTGTTCCACCCGT 60.522 61.111 0.00 0.00 0.00 5.28
391 392 2.048503 GTCCGTCTGTTCCACCCG 60.049 66.667 0.00 0.00 0.00 5.28
392 393 1.004918 CAGTCCGTCTGTTCCACCC 60.005 63.158 0.00 0.00 39.17 4.61
393 394 4.675404 CAGTCCGTCTGTTCCACC 57.325 61.111 0.00 0.00 39.17 4.61
401 402 5.014858 TCCAAGAATAGTTACAGTCCGTCT 58.985 41.667 0.00 0.00 0.00 4.18
402 403 5.125097 TCTCCAAGAATAGTTACAGTCCGTC 59.875 44.000 0.00 0.00 0.00 4.79
403 404 5.014858 TCTCCAAGAATAGTTACAGTCCGT 58.985 41.667 0.00 0.00 0.00 4.69
404 405 5.578005 TCTCCAAGAATAGTTACAGTCCG 57.422 43.478 0.00 0.00 0.00 4.79
405 406 8.041323 TGAATTCTCCAAGAATAGTTACAGTCC 58.959 37.037 7.05 0.00 43.67 3.85
406 407 9.436957 TTGAATTCTCCAAGAATAGTTACAGTC 57.563 33.333 7.05 0.00 43.67 3.51
407 408 9.965902 ATTGAATTCTCCAAGAATAGTTACAGT 57.034 29.630 7.05 0.00 43.67 3.55
409 410 9.958180 TCATTGAATTCTCCAAGAATAGTTACA 57.042 29.630 7.05 0.00 43.67 2.41
411 412 9.958180 TGTCATTGAATTCTCCAAGAATAGTTA 57.042 29.630 7.05 0.00 43.67 2.24
412 413 8.868522 TGTCATTGAATTCTCCAAGAATAGTT 57.131 30.769 7.05 0.00 43.67 2.24
413 414 8.734386 GTTGTCATTGAATTCTCCAAGAATAGT 58.266 33.333 7.05 0.00 43.67 2.12
414 415 8.733458 TGTTGTCATTGAATTCTCCAAGAATAG 58.267 33.333 7.05 0.00 43.67 1.73
415 416 8.634335 TGTTGTCATTGAATTCTCCAAGAATA 57.366 30.769 7.05 0.00 43.67 1.75
416 417 7.528996 TGTTGTCATTGAATTCTCCAAGAAT 57.471 32.000 7.05 0.00 46.22 2.40
417 418 6.957920 TGTTGTCATTGAATTCTCCAAGAA 57.042 33.333 7.05 0.00 38.78 2.52
418 419 6.547141 AGTTGTTGTCATTGAATTCTCCAAGA 59.453 34.615 7.05 0.00 0.00 3.02
419 420 6.742109 AGTTGTTGTCATTGAATTCTCCAAG 58.258 36.000 7.05 0.00 0.00 3.61
420 421 6.713762 AGTTGTTGTCATTGAATTCTCCAA 57.286 33.333 7.05 0.00 0.00 3.53
421 422 6.713762 AAGTTGTTGTCATTGAATTCTCCA 57.286 33.333 7.05 0.00 0.00 3.86
422 423 6.642540 GGAAAGTTGTTGTCATTGAATTCTCC 59.357 38.462 7.05 0.00 0.00 3.71
423 424 7.428826 AGGAAAGTTGTTGTCATTGAATTCTC 58.571 34.615 7.05 0.00 0.00 2.87
424 425 7.352079 AGGAAAGTTGTTGTCATTGAATTCT 57.648 32.000 7.05 0.00 0.00 2.40
425 426 9.696917 ATAAGGAAAGTTGTTGTCATTGAATTC 57.303 29.630 0.00 0.00 0.00 2.17
445 446 7.638192 GGATTCTCCTTTTCTGCCTAATAAGGA 60.638 40.741 0.00 0.00 41.42 3.36
446 447 6.488344 GGATTCTCCTTTTCTGCCTAATAAGG 59.512 42.308 0.00 0.00 38.66 2.69
447 448 7.286313 AGGATTCTCCTTTTCTGCCTAATAAG 58.714 38.462 0.00 0.00 46.91 1.73
448 449 7.213178 AGGATTCTCCTTTTCTGCCTAATAA 57.787 36.000 0.00 0.00 46.91 1.40
449 450 6.831664 AGGATTCTCCTTTTCTGCCTAATA 57.168 37.500 0.00 0.00 46.91 0.98
450 451 5.723860 AGGATTCTCCTTTTCTGCCTAAT 57.276 39.130 0.00 0.00 46.91 1.73
451 452 6.831664 ATAGGATTCTCCTTTTCTGCCTAA 57.168 37.500 0.15 0.00 46.91 2.69
452 453 6.386927 TCAATAGGATTCTCCTTTTCTGCCTA 59.613 38.462 0.15 0.00 46.91 3.93
453 454 5.192522 TCAATAGGATTCTCCTTTTCTGCCT 59.807 40.000 0.15 0.00 46.91 4.75
454 455 5.298026 GTCAATAGGATTCTCCTTTTCTGCC 59.702 44.000 0.15 0.00 46.91 4.85
455 456 5.882557 TGTCAATAGGATTCTCCTTTTCTGC 59.117 40.000 0.15 0.00 46.91 4.26
456 457 7.928307 TTGTCAATAGGATTCTCCTTTTCTG 57.072 36.000 0.15 0.00 46.91 3.02
457 458 7.497249 CGATTGTCAATAGGATTCTCCTTTTCT 59.503 37.037 0.15 0.00 46.91 2.52
458 459 7.281100 ACGATTGTCAATAGGATTCTCCTTTTC 59.719 37.037 10.03 0.00 46.91 2.29
459 460 7.066284 CACGATTGTCAATAGGATTCTCCTTTT 59.934 37.037 10.03 0.00 46.91 2.27
460 461 6.540189 CACGATTGTCAATAGGATTCTCCTTT 59.460 38.462 10.03 0.00 46.91 3.11
461 462 6.051717 CACGATTGTCAATAGGATTCTCCTT 58.948 40.000 10.03 0.00 46.91 3.36
462 463 6.352222 AACACGATTGTCAATAGGATTCTCCT 60.352 38.462 10.03 0.66 42.39 3.69
463 464 5.360591 ACACGATTGTCAATAGGATTCTCC 58.639 41.667 10.03 0.00 36.58 3.71
464 465 6.910536 AACACGATTGTCAATAGGATTCTC 57.089 37.500 10.03 0.00 33.55 2.87
465 466 6.655003 ACAAACACGATTGTCAATAGGATTCT 59.345 34.615 10.03 0.00 39.23 2.40
466 467 6.842163 ACAAACACGATTGTCAATAGGATTC 58.158 36.000 10.03 0.00 39.23 2.52
467 468 6.817765 ACAAACACGATTGTCAATAGGATT 57.182 33.333 10.03 1.86 39.23 3.01
468 469 8.506168 AATACAAACACGATTGTCAATAGGAT 57.494 30.769 10.03 0.00 42.33 3.24
469 470 7.822334 AGAATACAAACACGATTGTCAATAGGA 59.178 33.333 10.03 0.00 42.33 2.94
470 471 7.974675 AGAATACAAACACGATTGTCAATAGG 58.025 34.615 10.03 3.20 42.33 2.57
471 472 9.265938 CAAGAATACAAACACGATTGTCAATAG 57.734 33.333 0.00 0.74 42.33 1.73
472 473 8.233868 CCAAGAATACAAACACGATTGTCAATA 58.766 33.333 0.00 0.00 42.33 1.90
473 474 7.083858 CCAAGAATACAAACACGATTGTCAAT 58.916 34.615 0.00 0.00 42.33 2.57
474 475 6.434596 CCAAGAATACAAACACGATTGTCAA 58.565 36.000 8.75 0.00 42.33 3.18
475 476 5.049060 CCCAAGAATACAAACACGATTGTCA 60.049 40.000 8.75 0.00 42.33 3.58
476 477 5.048991 ACCCAAGAATACAAACACGATTGTC 60.049 40.000 8.75 0.00 42.33 3.18
477 478 4.825085 ACCCAAGAATACAAACACGATTGT 59.175 37.500 9.98 9.98 45.14 2.71
478 479 5.371115 ACCCAAGAATACAAACACGATTG 57.629 39.130 0.00 0.00 36.37 2.67
479 480 5.278758 CCAACCCAAGAATACAAACACGATT 60.279 40.000 0.00 0.00 0.00 3.34
480 481 4.217550 CCAACCCAAGAATACAAACACGAT 59.782 41.667 0.00 0.00 0.00 3.73
481 482 3.566322 CCAACCCAAGAATACAAACACGA 59.434 43.478 0.00 0.00 0.00 4.35
482 483 3.566322 TCCAACCCAAGAATACAAACACG 59.434 43.478 0.00 0.00 0.00 4.49
483 484 5.523438 TTCCAACCCAAGAATACAAACAC 57.477 39.130 0.00 0.00 0.00 3.32
484 485 5.894393 TCTTTCCAACCCAAGAATACAAACA 59.106 36.000 0.00 0.00 0.00 2.83
485 486 6.399639 TCTTTCCAACCCAAGAATACAAAC 57.600 37.500 0.00 0.00 0.00 2.93
486 487 5.010617 GCTCTTTCCAACCCAAGAATACAAA 59.989 40.000 0.00 0.00 0.00 2.83
487 488 4.522789 GCTCTTTCCAACCCAAGAATACAA 59.477 41.667 0.00 0.00 0.00 2.41
488 489 4.079253 GCTCTTTCCAACCCAAGAATACA 58.921 43.478 0.00 0.00 0.00 2.29
489 490 4.079253 TGCTCTTTCCAACCCAAGAATAC 58.921 43.478 0.00 0.00 0.00 1.89
490 491 4.380843 TGCTCTTTCCAACCCAAGAATA 57.619 40.909 0.00 0.00 0.00 1.75
491 492 3.243359 TGCTCTTTCCAACCCAAGAAT 57.757 42.857 0.00 0.00 0.00 2.40
499 500 4.261363 CCTTCACTCTTTGCTCTTTCCAAC 60.261 45.833 0.00 0.00 0.00 3.77
500 501 3.885297 CCTTCACTCTTTGCTCTTTCCAA 59.115 43.478 0.00 0.00 0.00 3.53
508 509 7.823745 TTATTTTTCTCCTTCACTCTTTGCT 57.176 32.000 0.00 0.00 0.00 3.91
509 510 9.481340 AATTTATTTTTCTCCTTCACTCTTTGC 57.519 29.630 0.00 0.00 0.00 3.68
570 571 8.800370 TGTCCATTTTGTGCAGTTCTTATATA 57.200 30.769 0.00 0.00 0.00 0.86
571 572 7.701539 TGTCCATTTTGTGCAGTTCTTATAT 57.298 32.000 0.00 0.00 0.00 0.86
677 678 7.284489 TGCCAATTTCCTGTAATATAACTCACC 59.716 37.037 0.00 0.00 0.00 4.02
685 686 6.183360 CCAATGGTGCCAATTTCCTGTAATAT 60.183 38.462 0.00 0.00 0.00 1.28
714 715 7.905604 TGATCACGATCATAAGAAAGTGTTT 57.094 32.000 5.62 0.00 42.42 2.83
729 730 6.465439 TTCTAGTGGTTATGTGATCACGAT 57.535 37.500 20.54 16.24 35.50 3.73
731 732 7.704899 TGTTATTCTAGTGGTTATGTGATCACG 59.295 37.037 20.54 2.78 35.50 4.35
769 770 5.833131 TCCAGCTTTGAACTTCAACCTAAAT 59.167 36.000 3.56 0.00 35.89 1.40
775 776 3.378427 ACTGTCCAGCTTTGAACTTCAAC 59.622 43.478 3.56 0.00 35.89 3.18
782 783 4.737352 GCATTTTCACTGTCCAGCTTTGAA 60.737 41.667 0.00 0.00 0.00 2.69
784 785 3.054878 GCATTTTCACTGTCCAGCTTTG 58.945 45.455 0.00 0.00 0.00 2.77
789 790 0.877071 AGCGCATTTTCACTGTCCAG 59.123 50.000 11.47 0.00 0.00 3.86
805 806 1.939934 TCTGTTTCCAAGTGTGAAGCG 59.060 47.619 0.00 0.00 0.00 4.68
806 807 3.206150 TCTCTGTTTCCAAGTGTGAAGC 58.794 45.455 0.00 0.00 0.00 3.86
817 818 6.174049 ACTAATTTAGTGCCTCTCTGTTTCC 58.826 40.000 8.27 0.00 37.69 3.13
842 843 2.684881 CCAGTGCTATGTGGGTGAAATC 59.315 50.000 0.00 0.00 0.00 2.17
894 900 9.862149 TCACAGTAATCTGGATTAGACAGTATA 57.138 33.333 3.59 0.00 45.14 1.47
925 931 6.265577 GGAGTCATATTGTACCATTGCAAAC 58.734 40.000 1.71 0.00 30.42 2.93
935 941 7.201705 GGCTTTTAACAGGGAGTCATATTGTAC 60.202 40.741 0.00 0.00 0.00 2.90
957 963 1.217942 AGAACAACAAAGAGGGGGCTT 59.782 47.619 0.00 0.00 0.00 4.35
960 966 2.656947 TCAGAACAACAAAGAGGGGG 57.343 50.000 0.00 0.00 0.00 5.40
965 971 5.009010 GGAATCTGCTTCAGAACAACAAAGA 59.991 40.000 0.27 0.00 44.04 2.52
966 972 5.009410 AGGAATCTGCTTCAGAACAACAAAG 59.991 40.000 0.27 0.00 44.04 2.77
970 976 3.190118 CCAGGAATCTGCTTCAGAACAAC 59.810 47.826 0.27 0.00 44.04 3.32
1026 1035 1.339055 GCAAGCTCTGGTGGTATGTCA 60.339 52.381 0.00 0.00 0.00 3.58
1070 1079 2.172483 GACACGGTCAGAGTGGGCAT 62.172 60.000 1.39 0.00 43.41 4.40
1086 1095 0.037697 ATACAGCTGCGAAACGGACA 60.038 50.000 15.27 0.00 0.00 4.02
1087 1096 0.370273 CATACAGCTGCGAAACGGAC 59.630 55.000 15.27 0.00 0.00 4.79
1124 1133 4.849329 GCTGATGCTGCCTTGCGC 62.849 66.667 0.00 0.00 36.03 6.09
1146 1155 4.994756 AACCAGGGCAAAGGCGGG 62.995 66.667 0.00 0.00 42.47 6.13
1152 1161 1.005450 GGGAGTATGAACCAGGGCAAA 59.995 52.381 0.00 0.00 0.00 3.68
1158 1167 1.210478 CCACCAGGGAGTATGAACCAG 59.790 57.143 0.00 0.00 40.01 4.00
1159 1168 1.203376 TCCACCAGGGAGTATGAACCA 60.203 52.381 0.00 0.00 42.15 3.67
1214 1223 1.473497 TTCGACACCGTTGGGGATCA 61.473 55.000 0.00 0.00 39.97 2.92
1270 1279 0.452184 AGGTAGCAGATGTCGTCACG 59.548 55.000 0.00 0.00 0.00 4.35
1306 1315 0.402121 GGGAGCTTCAAGGTGACCTT 59.598 55.000 11.91 11.91 45.88 3.50
1310 1319 0.687354 GTCAGGGAGCTTCAAGGTGA 59.313 55.000 0.00 0.00 0.00 4.02
1346 1355 2.279120 CGTCAGGCTCCTCGATGC 60.279 66.667 0.00 0.00 0.00 3.91
1386 1395 2.157668 CACGTCCAGACAAATGTAGCAC 59.842 50.000 0.00 0.00 0.00 4.40
1387 1396 2.412870 CACGTCCAGACAAATGTAGCA 58.587 47.619 0.00 0.00 0.00 3.49
1405 1414 8.445275 TTGTATATTGACATGGTTACATCCAC 57.555 34.615 0.00 0.00 40.51 4.02
1448 1457 1.228644 ATGGCAGCAACAAGGAGCA 60.229 52.632 0.00 0.00 0.00 4.26
1461 1470 1.449423 CCCGATGTCAACGATGGCA 60.449 57.895 1.34 1.34 46.97 4.92
1516 1525 5.285697 AAGCGCACTTACAAACCATAGGTT 61.286 41.667 11.47 0.00 40.28 3.50
1555 1564 4.889409 GCCTCCATGGAGAATTATGTCAAA 59.111 41.667 38.37 1.37 44.53 2.69
1572 1581 1.597854 CGTGAGCAACTTGCCTCCA 60.598 57.895 10.25 3.87 46.52 3.86
1589 1598 1.668419 GTTCCTCCATCCATCAACCG 58.332 55.000 0.00 0.00 0.00 4.44
1590 1599 1.566231 AGGTTCCTCCATCCATCAACC 59.434 52.381 0.00 0.00 39.02 3.77
1629 1638 1.002888 CTGCCATTGTCACTGTCCTCT 59.997 52.381 0.00 0.00 0.00 3.69
1776 1785 1.410083 GGCTTGCCATAGATTGTCCCA 60.410 52.381 6.79 0.00 0.00 4.37
1794 1803 1.600916 GTGGTTGTCCTCAGGTGGC 60.601 63.158 0.00 0.00 34.23 5.01
1795 1804 0.535102 GTGTGGTTGTCCTCAGGTGG 60.535 60.000 0.00 0.00 37.81 4.61
1802 1811 2.380285 AACCCGGTGTGGTTGTCCT 61.380 57.895 0.00 0.00 46.76 3.85
1808 1817 1.885163 GATCTCGAACCCGGTGTGGT 61.885 60.000 0.00 0.00 41.55 4.16
1816 1825 1.144936 CTGCCCTGATCTCGAACCC 59.855 63.158 0.00 0.00 0.00 4.11
1958 1967 1.212935 CCCCTTCAGATTGTACTGGGG 59.787 57.143 0.00 0.00 38.34 4.96
2004 2013 2.183409 CAGTACCACTGGCAATGGC 58.817 57.895 16.10 0.00 42.35 4.40
2159 2168 6.441093 TCTGCATATGTCAGGAACAAATTC 57.559 37.500 20.07 0.00 42.37 2.17
2161 2170 6.124340 TGATCTGCATATGTCAGGAACAAAT 58.876 36.000 20.07 10.05 42.37 2.32
2163 2172 5.101648 TGATCTGCATATGTCAGGAACAA 57.898 39.130 20.07 7.30 42.37 2.83
2181 2190 4.742659 GCTTGTAGTAAGCTAGCACTGATC 59.257 45.833 18.83 8.31 40.01 2.92
2191 2200 0.037326 TGCGCTGCTTGTAGTAAGCT 60.037 50.000 9.73 0.00 43.38 3.74
2195 2204 0.389817 CCACTGCGCTGCTTGTAGTA 60.390 55.000 14.80 0.00 0.00 1.82
2197 2206 3.031964 GCCACTGCGCTGCTTGTAG 62.032 63.158 14.80 0.03 0.00 2.74
2206 2215 2.879070 CGATCATCAGCCACTGCGC 61.879 63.158 0.00 0.00 44.33 6.09
2208 2217 1.523258 AGCGATCATCAGCCACTGC 60.523 57.895 0.00 0.00 37.95 4.40
2235 2244 6.313658 TGAAGAACATATCTGATTGACAACGG 59.686 38.462 0.00 0.00 38.79 4.44
2253 2262 8.509690 TCTGAATCAAATGACATTCTGAAGAAC 58.490 33.333 0.05 3.28 35.33 3.01
2255 2264 8.625786 TTCTGAATCAAATGACATTCTGAAGA 57.374 30.769 0.05 5.50 39.81 2.87
2256 2265 9.290483 CATTCTGAATCAAATGACATTCTGAAG 57.710 33.333 16.83 3.59 43.92 3.02
2258 2267 8.344446 ACATTCTGAATCAAATGACATTCTGA 57.656 30.769 18.14 8.06 36.57 3.27
2259 2268 8.860128 CAACATTCTGAATCAAATGACATTCTG 58.140 33.333 18.14 3.04 36.57 3.02
2260 2269 8.582437 ACAACATTCTGAATCAAATGACATTCT 58.418 29.630 18.14 0.00 36.57 2.40
2261 2270 8.752766 ACAACATTCTGAATCAAATGACATTC 57.247 30.769 18.14 0.00 36.57 2.67
2262 2271 9.850628 CTACAACATTCTGAATCAAATGACATT 57.149 29.630 18.14 0.00 36.57 2.71
2263 2272 9.017509 ACTACAACATTCTGAATCAAATGACAT 57.982 29.630 18.14 9.46 36.57 3.06
2265 2274 8.725148 AGACTACAACATTCTGAATCAAATGAC 58.275 33.333 18.14 0.00 36.57 3.06
2266 2275 8.724229 CAGACTACAACATTCTGAATCAAATGA 58.276 33.333 18.14 0.00 39.36 2.57
2267 2276 8.509690 ACAGACTACAACATTCTGAATCAAATG 58.490 33.333 0.00 12.95 39.36 2.32
2283 2300 5.233476 CGCTGTCAAAACTTACAGACTACAA 59.767 40.000 6.65 0.00 44.79 2.41
2319 2337 8.016054 AGGATATCTACTCAGGAAGAAGGATTT 58.984 37.037 2.05 0.00 0.00 2.17
2320 2338 7.543755 AGGATATCTACTCAGGAAGAAGGATT 58.456 38.462 2.05 0.00 0.00 3.01
2321 2339 7.114849 AGGATATCTACTCAGGAAGAAGGAT 57.885 40.000 2.05 0.00 0.00 3.24
2363 2382 1.769026 TCTCTCAGCCGCTACTGAAT 58.231 50.000 6.94 0.00 45.72 2.57
2370 2389 2.811101 CGGAATCTCTCAGCCGCT 59.189 61.111 0.00 0.00 37.08 5.52
2374 2393 1.470632 CCACTGACGGAATCTCTCAGC 60.471 57.143 7.37 0.00 35.75 4.26
2387 2406 2.032681 GCCACCCACTCCACTGAC 59.967 66.667 0.00 0.00 0.00 3.51
2416 2435 8.186709 TGATGCTTCAGTATTCTAGATCATCA 57.813 34.615 0.00 0.00 35.62 3.07
2485 2505 3.812053 AGATCAAGCAAACTGTGTGAGAC 59.188 43.478 1.19 0.00 0.00 3.36
2489 2509 5.929697 TTCTAGATCAAGCAAACTGTGTG 57.070 39.130 0.00 0.00 0.00 3.82
2490 2510 5.106396 GCATTCTAGATCAAGCAAACTGTGT 60.106 40.000 0.00 0.00 0.00 3.72
2513 2535 8.801715 TTCAGAATTTTTAAGAACTGACATGC 57.198 30.769 0.00 0.00 34.79 4.06
2522 2544 8.803799 GCGTCAACTTTTCAGAATTTTTAAGAA 58.196 29.630 0.00 0.00 0.00 2.52
2523 2545 7.971168 TGCGTCAACTTTTCAGAATTTTTAAGA 59.029 29.630 0.00 0.00 0.00 2.10
2524 2546 8.114359 TGCGTCAACTTTTCAGAATTTTTAAG 57.886 30.769 0.00 0.00 0.00 1.85
2525 2547 8.538856 CATGCGTCAACTTTTCAGAATTTTTAA 58.461 29.630 0.00 0.00 0.00 1.52
2532 2613 4.350346 CAACATGCGTCAACTTTTCAGAA 58.650 39.130 0.00 0.00 0.00 3.02
2568 2649 8.571336 TGCAAGTTTTCAAAAATTCCAAAGAAA 58.429 25.926 0.00 0.00 35.09 2.52
2569 2650 8.103948 TGCAAGTTTTCAAAAATTCCAAAGAA 57.896 26.923 0.00 0.00 36.15 2.52
2570 2651 7.678947 TGCAAGTTTTCAAAAATTCCAAAGA 57.321 28.000 0.00 0.00 0.00 2.52
2571 2652 8.739649 TTTGCAAGTTTTCAAAAATTCCAAAG 57.260 26.923 7.83 0.00 30.19 2.77
2584 2740 9.771915 TCTCAAAATTCAAATTTGCAAGTTTTC 57.228 25.926 16.38 0.00 38.53 2.29
2611 2767 1.335597 ACATGATACCGTGATACCGCG 60.336 52.381 0.00 0.00 45.12 6.46
2665 2821 3.384168 TGAGCATCAGGGTGGTATAGTT 58.616 45.455 0.00 0.00 42.56 2.24
2697 2853 3.135994 TCTTCTTCAAGGCCAACGTTAC 58.864 45.455 5.01 0.00 0.00 2.50
2746 2902 4.952262 TGTATCAGTTCTTGCATCTTGC 57.048 40.909 0.00 0.00 45.29 4.01
2888 3050 5.052481 TCTGATGATGAATTAGCTGGAACG 58.948 41.667 0.00 0.00 0.00 3.95
2890 3052 6.656902 AGTTCTGATGATGAATTAGCTGGAA 58.343 36.000 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.