>input_sequence_63396
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------------------------------------------------ATGGCAAGGTACCAGCGATCATGGTCTGACAT
ACCACCAGAGCTTGCTGCCCTGGTCCTCCTCCGCCTCCATGCCCACTCTGACCGTGTCCGTTTCGCAGCTGTATGCCGCG
ATTGGCGCGCCTGCGCAAGGCAGCATCAGCTGCCCCCGCCTTTGCCCTGGTTCATACTCCCTGGTGGAACCTTCTTCACC
TTACCCCACAGTGAATCCTTCCTGATCCCCAACGGTGTCGAATTCCACAGTTCCTGCGGTGAGTGGCTTGTCTTTGCACG
TGACGACATCTGCTACCTCGTAGACACCTTCTCTAAGGTCACCTTGAAGCTCCCTGACCTAGACATGTACGACCGCATCG
AGGAGCCTGACGAAGTTATCAATGGTCACAGCATGTGCTACATTTGTCTGGACGTGGATGTAACCATGTCAATATACAAG
GTAATCGTGTGCTCAGTGCTCCTTGTTGCTGCCATCGTTGACATCGGGGATCTCCGCACTCTTGCGGTGTGCCGACCGGG
AGGTAACCTATGGTTTGTAAGTGCGCTTGGCTACGACAGGTCCTTTGACATAATTCTCCATGGAGGCAAGTTGCTCACGG
TTGATGGATGGAGGAACCTTTGCGTTATCGATGTCGAAGAGGACAGTGACAATGGCAGCCTATTCATTTCCCGGATCGAG
CGCATCATCAAGGGTCCTCCCTGGCCCTTCAGGCAGTTCCCGGGTGGCCTCCTTGTATTCGACCAATACCTGGTTGAATC
TCATGGCGCCCTGCTGCTGGTCCGTGGGACAATCTATGGCAAGCCACCTGAGGACAACCACACCGGGTTCGAGATCAGGG
CAGTACGGTTTGAATTCGAGGTGTGTGAGGCAGACTTTCAGTCGTCGCAGTGGGTTGAGAGGAGGAGCGTGGGGGGACGA
CCAGGTGCTGTTTCTTGGGCCGAGATGCTCCAAGTCTGTCTGTGCGCCCCAGTACAATCTGAAGGGGAACTGCATCTTCT
TCCTGGATGA----------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G100200
CAACACGATACCTCCAGCCCAGCACACACCGCACAGGCCTAATTCCGCTTCCACAGCCCATTTGCTGAAGCCTTTCACAC
AACAGACAACCGCACACTTTCTCAAAAAAAAAAAAAACAGACAACCGCACACACCCTCAAAAAATAAAAATAAAACAGAC
AACCGCACGAAAAAGAGAGCAGACAACCGCACGCCGGCACGCGCGCATCGGCGGCGCCTAGATCGGCGGTGACGGAGGCA
CGTCGCCGTCGAGGAACCTAGAGGTAATGCCAAATCGACATATTTTTCTCCGGCAGACCAGGATAGTTTTCTCTGGCCGG
TTAATTTAGCGCCGTCATAATGCTGCAGCTCGTTTTGCTGCCACCTAGGGTTTGATTTGATCCCAGATTAACGGGTGGAA
CAGACGGACTGTAACTATTCTTGGAGAATTCAATGACAACAACTTTCCTTATTAGGCAGAAAAGGAGAATCCTATTGACA
ATCGTGTTTGTATTCTTGGGTTGGAAAGAGCAAAGAGTGAAGGAGAAAAATAAATTGAATCTCATTCAGTAATTAGCAGA
GAAGAGCGATTATATAAGAACTGCACAAAATGGACATAAAGCCTCCTCAATTTAGAAGTAATATTCCCTCTGATTCTTTA
CTAGTTCAATCTTTGACCAATAACTAATATGATAATAGGTGAGTTATATTACAGGAAATTGGCACCATTGGATTAAACAC
TTTCTTATGATCGTGATCACATAACCACTAGAATAACAATAAATGGAAAATTTAGGTTGAAGTTCAAAGCTGGACAGTGA
AAATGCGCTTCACACTTGGAAACAGAGAGGCACTAAATTAGTGAT-----TTCACCCACATAGCACTGGAGCACATCTAA
TCACCTATTCTTGATGTTTTATACTGTCTAATCCAGATTACTGTGATTCAGTTTGCAATGGTACAATATGACTCCCTGTT
AAAAGCCCCCTCTTTGTTGTTCTGAAGCAGATTCCTG---GCAGCAGCATGGCAAGGTACCAGCGATCATGGTCTGACAT
ACCACCAGAGCTTGCTGCCCTGGTCCTCCTCCGCCTCCATGCCCACTCTGACCGTGTCCGTTTCGCAGCTGTATGCCGCG
ATTGGCGCGCCTGCGCAAGGCAGCATCAGCTGCCCCCGCCTTTGCCCTGGTTCATACTCCCTGGTGGAACCTTCTTCACC
TTACCCCACAGTGAATCCTTCCTGATCCCCAACGGTGTCGAATTCCACAGTTCCTGCGGTGAGTGGCTTGTCTTTGCACG
TGACGACATCTGCTACCTCGTAGACACCTTCTCTAAGGTCACCTTGAAGCTCCCTGACCTAGACATGTACGACCGCATCG
AGGAGCCTGACGAAGTTATCAATGGTCACAGCATGTGCTACATTTGTCTGGACGTGGATGTAACCATGTCAATATACAAG
GTAATCGTGTGCTCAGTGCTCCTTGTTGCTGCCATCGTTGACATCGGGGATCTCCGCACTCTTGCGGTGTGCCGACCGGG
AGGTAACCTATGGTTTGTAAGTGCGCTTGGCTACGACAGGTCCTTTGACATAATTCTCCATGGAGGCAAGTTGCTCACGG
TTGATGGATGGAGGAACCTTTGCGTTATCGATGTCGAAGAGGACAGTGACAATGGCAGCCTATTCATTTCCCGGATCGAG
CGCATCATCAAGGGTCCTCCCTGGCCCTTCAGGCAGTTCCCGGGTGGCCTCCTTGTATTCGACCAATACCTGGTTGAATC
TCATGGCGCCCTGCTGCTGGTCCGTGGGACAATCTATGGCAAGCCACCTGAGGACAACCACACCGGGTTCGAGATCAGGG
CAGTACGGTTTGAATTCGAGGTGTGTGAGGCAGACTTTCAGTCGTCGCAGTGGGTTGAGAGGAGGAGCGTGGGGGGACGA
CCAGGTGCTGTTTCTTGGGCCGAGATGCTCCAAGTCTGTCTGTGCGCCCCAGTACAATCTGAAGGGGAACTGCATCTTCT
TCCTGGATGACGGCCATTGCCAGTGGTACTGGAAGCACGCGCCGAGCGCGCCGAGCTCGTACGCAATATTCGACATGAGT
GATGAGTCGGTCCGCTCTCCGCTTCCTAGAGGATCGTGCAAAGGCGAGGAGGCGCCGGCGACATGGCATTTCCCTCGGGG
CTGATATGAATTTGTTCCTGACATATGCAGATCAGTGCTAGCTTACTACAAGCAGCGCAGTGGCTGATGATCGCTGAATC
GCTCCGTTGTCAATCAGATATGTTCTTCAGAATGTCA--------TTTGATTCAGAATGTTGTAGTCTGTAAGTTT-TGA
CAGCGTTTACTAAAAAAAA-TCCTTCTTCCTGAGTAGATATCCTATAATTTCCCTTAAGCTATTCAGTAGCGGCTGAGAG
ATTCCGTCAGTGGAGTGGGTGGCGTTGAAGATTTTGATGATCTAGAATACTG-AAGCATCATGAATTCGTTGCAAAAAAT
GTCACATTTCAATTCGAAAGACTCGTCTCAC--ACAGTTTGCTTGATCTAGAATGCATGTCAGTTCTT------------
-----------------------------------------------AAAAATTCTGAAAAGTTGACGCATGTTGCTAAC
ATTCATTTTTTCT-------------------------------------------------------------------
-------TTGGAA-TTTTTGAAAACTTGCAAATTTGAATTTTGAGACGCGGTATCACGGTATCATGTAAAGTTTGATATC
AGACGCTGATCATACAGGGAAACTATACCACCCTGATGCTCAATAATGCAGAGTAACGTTGGCCTTGAAGAAGAAACAAC
TGAATAAATCAGCATCAAGATGCAAGATGCAAGA------ACTGATACAACAACATAATGCAGTGCCTCTGCGGTCTGCA
AGCCTATGCGTATTTACAACCGCCTATACGAGGGTTATACTAAGTTACCTAAAACTAGGGGCAAGAAAATAAAAATAAAA
TTCTTGAGCCGTTCCAGCTAATTCATCATCAGAACTAAAACAACGACGCTGTTCTGGCTTCGTCTCTGAGCAAGAGCTTC
TTCCACTCCTCCACCCAGCGGGTGTAGCTCGATTGCGGCGCAA
>chr4A_493
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------------TTCTTGGTGTGGAAAGGAG-----GTGAAGGAGAAAAATAAATTGAATCTCATTCAGTTATTAGCAGA
GAAGAGCGAT--TATAAGAACTGCACAAAATGGACATAAAGCCTGCTCGATGTAGAAATAATATTCCCTCTGATTTAGAA
ATGGAG---------------------TATGATAGTATGTGAGTTGTATTACAGGAAATTGGCACCATTGGATTGAACAC
TTTCTTTTGGTTGTGATTATATAACCACTTGAATAACAATAAATGGAAATTTTAGCTTGAAGATGAAAGTTGGACAGTGA
AAATGGACTTCACACTTCGAAAC--AGAGGCACTAAATTAGTCATTCAATTTCACCCACATAGCACTGGAGCACATCTAA
TCGCCTATTCCTGATGTTTCATACTGCCTAATCCAGATTACTGTGATTCATTTTGCAATGATACAATATGACTCCCTGTT
AAGAGTCCCCCATTTTTTGTTCTGAAGCAGATTCCTGGAAGCAGCAGCATGGCAAGGTACCAGCGATCATGGTCGGACAT
ACCACCAGAGCTTGCTGGCCTGGTCCTCCTCCGCCTCCCTGCCCACTCTGACCGCATCCGTTTCGCAGCTGTATGCCGCC
ATTGGTGCGCCTCCGCAAGGCAGCATCAGCTGCCTCCGCCATTGCCGCGGTTCATACTCCCCGGTGGAACCTTCTTCACC
TTACCCCACAGTGAATCCTTCCAGATCCCCAACGGTGCCGAATTCCACAGTTCCTGCGGTGAGTGGCTTGTCTTTGCATG
TGACGACATCTGCTACCTCGTAGACACCTTCTCTGAGGCCACCTTGAAGCTCCCTGACCTAGACATGTACGACCCCATCG
AGGAGCCTGACGAAGTTATCAACGGTCACAGCATACGCTACATTTGTCTGGACCTGAATGCAACCATGTCAATATACAAG
GTAATCATGTGCTCAGAGCTCCTTGTTGCCGCCATCGTTGACGTTGGGGACCTCCGCACCCTTGCGGTGTGCCGACCGGG
AGGTGACCTATGGTTTGTAAGTGCGCTTGGCTACGACAGGTCCCTTGACATAATTCTCCACGGAGGCAAGTTGCTCATTG
TTGATGGATGGAGGAACCTTTACGTTATCGATGTCGAGGAGGACAGTGACAATGGCAGCCTACTCATTTCCCGGATCGAG
CGCATCATCGAGGGTCCTCCCTGGCCCTTCAGGCGGTTCCCGGGTTTCCTCCTCGTATTTGACACATACCTGGCTGAATC
CCGCGGCGCTCTGCTGCTGGTCCGCGGGACCATCTATGGCAACACACCTGCCGGCAGCCACACCAGGTTCGAGATCAGAG
CAGTACGGTTTGAATTCGAGGTGTGTGAGGCAGACTTTCAGTCGTCTCAGTGGGTTGAGAAGAGGAGCGTG-GGGGACGA
CCAGGTGCTGTTTCTTGGGCCAAGATGCTCCAAGTCTGTCTGTGCGTCCCAGTACAATCTGAAGGGGAACTGCATCTTCT
TCCTGGATGACGACCGTTGCCAGTGGTACTGGAAGCATGCGCCGAGCGCGCCGAGCTCGTACGCGATATTCGACATGAGT
GATGAGTCGGTCCGCTCGCCGCTTCCTAGAGGATCGTGCAAGGGCGAGGAGGCGCCGGCGACATGGCATTTTCCTAGGTG
CTGATATTAGTCTGTTCCTGACATATGCACATCAGCGCT----GAATACAAGCAACACTGTGGCTGATGATCACTGAATC
GCTTCGTTGTCAATCAGAT--ATGTTCTGTGTTCCAAAATGTCATTTTGATTCAGAATGCTGTAGTCTGTAAGTTTGTGA
CAGCGTTTTCCAAAAATTCTTCGTTCTTCCTGAGTAAAAACCCTGTAATTTCTCTTAAGCTGTTCAGTTGCGACAGAGAG
ATTCCATCAGTGCAGTGAGTGGCGTTGAAGATTTCGATGATCTAGAATACTGTAAGCATC--------ATGGC-AAAAAT
GTCGCCTTTCGATTCGAAAGACTCATCT--C--ACAGTTTGCTTCATTTAGAATACATGTCTCCAAATATTAATT-----
----------------------------------TAGAAGTTCTCAAAAAAAATCTGAAAATTTGAATATTCACAAGATA
CATGTGTTACAATCCCTTTGCTTTTTTT-GTTTCACGATGTGTAGTTTTAATTTAGATTTGAAA--TTTAGGGATTGTAG
ACACATGTTGGAATTTTTTTAAAACTTGCAGATTTGAATTTGCGAT-GCGGTATCACGGTGTCATGCAAAGTTTGATATC
AGACGCTGATCATACAGGGACACTATACCACCCAGATGCTCAATAATGCAGATCAACGATGGCCTTGAAGAAGAAACAAC
TGAATAAATCAGCAT-------CAAGATGCAAGA------ACTGATACAACAACATAATGCAGTGCCACTGCGGTCTGCA
AGCCTACGCGTATTTACAACCGCCTATACGAGGGCTATACTAAGTTACCTAAAACTAGTGGCAA-AAAA-AAAAATAGAA
TTCTTGAGCTGCTCCAGCTAATTCATCATCAGAACTAAAACAAGGACGCTGTTCTGGCTTCGTCTCTGAGCAAGAGCTTC
TTCCACTCCTCCACCCAGCGGGTGTAGCTGGACTGCGGCGCAA
>chr4D_1618
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-------------------------TATTGATGTCGAGGAGGACAGTGACAACTGTAGCCTATCCATTTCCCGGATCGAG
CGCATCATCGAGGGTCCTCCCTGGCCCTTCAGGCGGTTCCCGGGTGGCCTCCTCGTATTCGACCAATACCTGGTTGAATC
TCGCGGCGCCCTGCTGCTGGTCCGCGGGACAATCTATGGCAACACACCTGCGGGCAGCCACACCAGGTTCTAGATCAGGG
CAGTACGGTTTGAATTCGAGGTGTGTGAGGCAGACTTTCAGTCGTCGCAGTGGGTTGAGAGGAGGAGCGTG-GGGGACGA
CCAGGTGCTGTTTCTTGGGCCGAGATGCTCCAAGTCTGTCTGTGCGTCCCAGTACAATCTGAAGGGGAACTGCATCTTCT
TCCTGGATGACGACCGTTGCCAGTGGTACTGGAAGCACGCGCCGAGCGCGCCGAGCTCATATGCGATATTCGACATGAGT
GATGAGTCGGTCCGCTTGCCGCTTCCTAGAGGATCGTGCAAGGGCGAGGAGGCGCCGGCGACATGGCATTTCCCTCGGGG
CTGATATTAGTCTGTTCCTGACAT--GCACATCAGT----GCTGAATACAAGCAACACAGTGGCTGATGATCGCTGAATC
GCTTCGTTGTCAATCAGATATATGTGCTGTGTTCCAAAATGTCATTTCGATTCAGAATGCTGTAGTCTGTAAGTTTGTGA
GAGCTTTTACCAAAAATTCTTCATTCTTCCTGAGTAAAAACCCTGTAATTTCTCTTAAGATGTTCAGTTGCGATTGAGAG
ATTCCATCGGTGGAGTGGGTGGCGTTGAAGATTTCGATGATCTAGAATACTGTAAGCATCACGAATTCATGGC-AAAAAT
GTCACCTTTTGATTCTAAAGACTCATCT--CACACAGTTTGCTTGATCTAGAATACATGTCTCCAAATGTTAATTTACTA
CCAAAAGTGTTCTTATATTATGGGACAGATGGAGTAGAAGTTCTCAAAAA------------TTGAATATTCACAAGATA
CATGT-TTACAATCCCTTTGCTTTTTTTTGTTTCTCAATGTGTATTTTTAATTTAGATTTGAAATTTTTAGTGATTGTAG
ACATATGTTGGAA-TTTTTTAAGACTTGCAAATTTGAATTTTGAGATG--------CGGTATCATGTAAACTTTGATATC
AGACGCTGATCATACAGGGACACCATACCACCCAGATGCTCAATAATGCAGATTAACGTCGGCCTTGAGGAAGAAACAAC
TGAATAAATCAGCAT-------CAAGATGCAAGATGATGAACTGATACAACAACATAATGCAGTGCCTCTGCGGTCTGCA
AGCCTATGCGTATTTACAACCGCCTATACCAGGGCTATACTAAGTTACCTAAAACTAGTGGCAA-AAAATAAAAATAAAA
ATCTTGAGCTGCTCCAGCTAATTCATCATGAGAACTAAAACAACGACGCTGTTCTGGCTTCGTCTCTGAGCAAGAGCTTC
TTCCACTCCTCCACCCAGCGGGTGTAGCTCGACTGCGGCGCAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-------SS-------SSSSSSSS----------------------------------S---------
----------SS--------------------------------S---S--S-----S-----------------SSSS-
S-S-SSSSSSSSSSSSSSSSSSSSSSS-------S--S-------S----------------------------S-----
------S--S-S-----S-S---------S-------------------S-----S------S-S----S----------
-----SS----------S-----SS-----------------S-------------------------------------
--S-------S--------S------S-----------------------S---------S-------------------
--S--S----SS---S----------------------------------------------------------S-----
-----------------S--------------------S---------------SS-----------------------S
-----S------S---------------------S-----S-----SS-------------S------------------
----------------------S--------------S----------------------------------------S-
----------------------------------S---S-----------------------------------S-----
----------------------S-----------SS-----------------S--S---S-------------------
------S---------S------------S------------S-S-----S--------S--------------------
----S--------------------------------------S----------------S----------------SS-
---------------------S---------------S------------------------------------------
---------S------------------------S------------------S--------------------------
--SS--------------------S-----------------SS------S--S--S-------S---------------
-----------------------------------------------------------------------S--------
----------------------------------------------S---------------------------------
------------S--S------------------------------------------------S---------------
-----------------S-----------------------S--------------------------------------
-------S-S-S-----------------S---------S---S-S--------S-S-----------------------
---S-----------------S-SS-SSSSSS-SSS-----------------------S--------------------
----------S-----SSS---S-------------S-S-S---S-------S--------S------S---S-------
-----S----------------------------S--------------------------S------S-S--S------
-----S----S-------------S---SS------------------------S------SSSSSS-------------
----------------------------------------------------S--------S----SSSS-SSSSSS-SS
SS-SSS--SSSS--------------------------------------------------------------------
-------------------S--------------------------S---------------------------------
--------------------S------------S------------------S---------------------------
---------------SSSSSSS----------------------------------------------------------
----------------------------------S-----------------------S-----S---------------
---------S-S--------------------------------------------------------------------
--------------------------------S----------
>forward_332
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------------------------------------------------------------------------CTGGCCGG
TTAATTTAGCGC--------------------------------------------------------------------
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>reverse_2200
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---------------------------------------AGCTTACTACAAGCAGCGCA---------------------
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