Multiple sequence alignment - TraesCS4B01G081500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G081500 chr4B 100.000 2798 0 0 1 2798 79738981 79736184 0.000000e+00 5168
1 TraesCS4B01G081500 chr4B 85.915 284 31 7 5 284 574509734 574510012 7.580000e-76 294
2 TraesCS4B01G081500 chr4A 94.287 1628 63 14 608 2209 542827639 542829262 0.000000e+00 2464
3 TraesCS4B01G081500 chr4A 89.333 600 52 9 2205 2798 542829550 542830143 0.000000e+00 743
4 TraesCS4B01G081500 chr4A 96.330 109 3 1 448 555 542827530 542827638 7.960000e-41 178
5 TraesCS4B01G081500 chr4D 94.639 1511 48 13 593 2073 54128102 54126595 0.000000e+00 2311
6 TraesCS4B01G081500 chr4D 89.034 611 55 11 2195 2798 54126004 54125399 0.000000e+00 747
7 TraesCS4B01G081500 chr4D 86.331 278 27 8 1 273 492600492 492600763 2.730000e-75 292
8 TraesCS4B01G081500 chr4D 86.301 219 22 4 348 562 54128311 54128097 6.030000e-57 231
9 TraesCS4B01G081500 chr4D 95.683 139 5 1 2072 2210 54126434 54126297 3.630000e-54 222
10 TraesCS4B01G081500 chr5D 87.676 284 25 7 1 279 210678177 210677899 3.480000e-84 322
11 TraesCS4B01G081500 chr5D 88.571 140 12 4 1193 1330 365992582 365992719 1.720000e-37 167
12 TraesCS4B01G081500 chr2D 86.458 288 25 9 1 280 485597682 485597963 1.260000e-78 303
13 TraesCS4B01G081500 chr2D 86.833 281 26 8 5 280 596209838 596209564 1.260000e-78 303
14 TraesCS4B01G081500 chr2D 86.159 289 28 9 1 283 485647784 485648066 4.530000e-78 302
15 TraesCS4B01G081500 chr2D 86.738 279 26 7 1 273 320797099 320797372 1.630000e-77 300
16 TraesCS4B01G081500 chr2D 85.616 292 27 10 1 283 485604568 485604853 2.730000e-75 292
17 TraesCS4B01G081500 chr2D 89.437 142 11 4 1191 1330 634556345 634556206 2.860000e-40 176
18 TraesCS4B01G081500 chr3D 86.170 282 26 9 4 279 324639557 324639283 2.730000e-75 292
19 TraesCS4B01G081500 chr3D 86.842 152 18 2 1193 1343 61703549 61703399 4.790000e-38 169
20 TraesCS4B01G081500 chr3B 87.500 152 17 2 1193 1343 99171521 99171371 1.030000e-39 174
21 TraesCS4B01G081500 chr3A 87.500 152 17 2 1193 1343 70730649 70730499 1.030000e-39 174
22 TraesCS4B01G081500 chr2A 88.028 142 13 4 1191 1330 778827534 778827673 6.200000e-37 165
23 TraesCS4B01G081500 chr5B 87.857 140 13 4 1193 1330 432323434 432323571 8.020000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G081500 chr4B 79736184 79738981 2797 True 5168.000000 5168 100.000000 1 2798 1 chr4B.!!$R1 2797
1 TraesCS4B01G081500 chr4A 542827530 542830143 2613 False 1128.333333 2464 93.316667 448 2798 3 chr4A.!!$F1 2350
2 TraesCS4B01G081500 chr4D 54125399 54128311 2912 True 877.750000 2311 91.414250 348 2798 4 chr4D.!!$R1 2450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.040157 CCACAACATGTCGTGCTTGG 60.040 55.0 11.58 2.48 0.0 3.61 F
862 866 0.250945 TCTCGCTCACTCACTCTGGT 60.251 55.0 0.00 0.00 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 1487 0.387878 CGAACAGCGAGCTGAGAAGT 60.388 55.0 29.11 5.74 46.3 3.01 R
2487 3003 0.804989 CTCTTTTCCATCACACCGGC 59.195 55.0 0.00 0.00 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.566759 TGCATAAGTCGTCTTAGATTGTGC 59.433 41.667 14.14 14.14 39.17 4.57
24 25 4.566759 GCATAAGTCGTCTTAGATTGTGCA 59.433 41.667 15.38 0.00 39.17 4.57
25 26 5.500931 GCATAAGTCGTCTTAGATTGTGCAC 60.501 44.000 10.75 10.75 39.17 4.57
26 27 2.596452 AGTCGTCTTAGATTGTGCACG 58.404 47.619 13.13 0.00 0.00 5.34
27 28 1.059264 GTCGTCTTAGATTGTGCACGC 59.941 52.381 13.13 4.13 0.00 5.34
28 29 1.067693 CGTCTTAGATTGTGCACGCA 58.932 50.000 13.13 0.98 0.00 5.24
29 30 1.459209 CGTCTTAGATTGTGCACGCAA 59.541 47.619 13.13 1.77 0.00 4.85
30 31 2.721797 CGTCTTAGATTGTGCACGCAAC 60.722 50.000 13.13 3.76 0.00 4.17
31 32 2.480419 GTCTTAGATTGTGCACGCAACT 59.520 45.455 13.13 11.04 0.00 3.16
32 33 3.678072 GTCTTAGATTGTGCACGCAACTA 59.322 43.478 13.13 10.08 0.00 2.24
33 34 4.151689 GTCTTAGATTGTGCACGCAACTAA 59.848 41.667 13.13 16.13 0.00 2.24
34 35 4.388773 TCTTAGATTGTGCACGCAACTAAG 59.611 41.667 27.40 27.40 38.91 2.18
35 36 1.806542 AGATTGTGCACGCAACTAAGG 59.193 47.619 13.13 0.00 0.00 2.69
36 37 0.240945 ATTGTGCACGCAACTAAGGC 59.759 50.000 13.13 0.00 0.00 4.35
43 44 2.353573 GCAACTAAGGCGGGGGAA 59.646 61.111 0.00 0.00 0.00 3.97
44 45 1.303806 GCAACTAAGGCGGGGGAAA 60.304 57.895 0.00 0.00 0.00 3.13
45 46 1.592400 GCAACTAAGGCGGGGGAAAC 61.592 60.000 0.00 0.00 0.00 2.78
46 47 1.002990 AACTAAGGCGGGGGAAACG 60.003 57.895 0.00 0.00 0.00 3.60
47 48 1.482748 AACTAAGGCGGGGGAAACGA 61.483 55.000 0.00 0.00 0.00 3.85
48 49 1.153429 CTAAGGCGGGGGAAACGAG 60.153 63.158 0.00 0.00 0.00 4.18
49 50 1.610086 TAAGGCGGGGGAAACGAGA 60.610 57.895 0.00 0.00 0.00 4.04
50 51 1.610554 TAAGGCGGGGGAAACGAGAG 61.611 60.000 0.00 0.00 0.00 3.20
51 52 3.387947 GGCGGGGGAAACGAGAGA 61.388 66.667 0.00 0.00 0.00 3.10
52 53 2.660802 GCGGGGGAAACGAGAGAA 59.339 61.111 0.00 0.00 0.00 2.87
53 54 1.740664 GCGGGGGAAACGAGAGAAC 60.741 63.158 0.00 0.00 0.00 3.01
54 55 1.972978 CGGGGGAAACGAGAGAACT 59.027 57.895 0.00 0.00 0.00 3.01
55 56 0.320697 CGGGGGAAACGAGAGAACTT 59.679 55.000 0.00 0.00 0.00 2.66
56 57 1.547372 CGGGGGAAACGAGAGAACTTA 59.453 52.381 0.00 0.00 0.00 2.24
57 58 2.028748 CGGGGGAAACGAGAGAACTTAA 60.029 50.000 0.00 0.00 0.00 1.85
58 59 3.369157 CGGGGGAAACGAGAGAACTTAAT 60.369 47.826 0.00 0.00 0.00 1.40
59 60 3.939592 GGGGGAAACGAGAGAACTTAATG 59.060 47.826 0.00 0.00 0.00 1.90
60 61 4.565028 GGGGGAAACGAGAGAACTTAATGT 60.565 45.833 0.00 0.00 0.00 2.71
61 62 5.001874 GGGGAAACGAGAGAACTTAATGTT 58.998 41.667 0.00 0.00 42.38 2.71
62 63 5.472478 GGGGAAACGAGAGAACTTAATGTTT 59.528 40.000 0.00 0.00 39.30 2.83
63 64 6.652062 GGGGAAACGAGAGAACTTAATGTTTA 59.348 38.462 0.00 0.00 39.30 2.01
64 65 7.336176 GGGGAAACGAGAGAACTTAATGTTTAT 59.664 37.037 0.00 0.00 39.30 1.40
65 66 8.727910 GGGAAACGAGAGAACTTAATGTTTATT 58.272 33.333 0.00 0.00 39.30 1.40
107 108 5.726980 ATGCAATGAACTAACCACAACAT 57.273 34.783 0.00 0.00 0.00 2.71
108 109 4.869215 TGCAATGAACTAACCACAACATG 58.131 39.130 0.00 0.00 0.00 3.21
109 110 4.340666 TGCAATGAACTAACCACAACATGT 59.659 37.500 0.00 0.00 0.00 3.21
110 111 4.917415 GCAATGAACTAACCACAACATGTC 59.083 41.667 0.00 0.00 0.00 3.06
111 112 5.146460 CAATGAACTAACCACAACATGTCG 58.854 41.667 0.00 0.00 0.00 4.35
112 113 3.799366 TGAACTAACCACAACATGTCGT 58.201 40.909 0.00 0.00 0.00 4.34
113 114 3.558006 TGAACTAACCACAACATGTCGTG 59.442 43.478 10.07 10.07 0.00 4.35
114 115 1.871039 ACTAACCACAACATGTCGTGC 59.129 47.619 11.58 0.00 0.00 5.34
115 116 2.143122 CTAACCACAACATGTCGTGCT 58.857 47.619 11.58 3.44 0.00 4.40
116 117 1.388547 AACCACAACATGTCGTGCTT 58.611 45.000 11.58 1.32 0.00 3.91
117 118 0.662619 ACCACAACATGTCGTGCTTG 59.337 50.000 11.58 1.28 0.00 4.01
118 119 0.040157 CCACAACATGTCGTGCTTGG 60.040 55.000 11.58 2.48 0.00 3.61
119 120 0.662619 CACAACATGTCGTGCTTGGT 59.337 50.000 3.55 0.00 0.00 3.67
120 121 1.870402 CACAACATGTCGTGCTTGGTA 59.130 47.619 3.55 0.00 0.00 3.25
121 122 2.096268 CACAACATGTCGTGCTTGGTAG 60.096 50.000 3.55 0.00 0.00 3.18
122 123 2.143122 CAACATGTCGTGCTTGGTAGT 58.857 47.619 0.00 0.00 0.00 2.73
123 124 2.080286 ACATGTCGTGCTTGGTAGTC 57.920 50.000 0.00 0.00 0.00 2.59
124 125 1.618837 ACATGTCGTGCTTGGTAGTCT 59.381 47.619 0.00 0.00 0.00 3.24
125 126 2.263077 CATGTCGTGCTTGGTAGTCTC 58.737 52.381 0.00 0.00 0.00 3.36
126 127 1.324383 TGTCGTGCTTGGTAGTCTCA 58.676 50.000 0.00 0.00 0.00 3.27
127 128 1.684450 TGTCGTGCTTGGTAGTCTCAA 59.316 47.619 0.00 0.00 0.00 3.02
128 129 2.288213 TGTCGTGCTTGGTAGTCTCAAG 60.288 50.000 0.00 0.00 43.10 3.02
129 130 1.961394 TCGTGCTTGGTAGTCTCAAGT 59.039 47.619 0.00 0.00 42.44 3.16
130 131 2.030185 TCGTGCTTGGTAGTCTCAAGTC 60.030 50.000 0.00 0.00 42.44 3.01
131 132 2.288213 CGTGCTTGGTAGTCTCAAGTCA 60.288 50.000 0.00 0.00 42.44 3.41
132 133 3.615110 CGTGCTTGGTAGTCTCAAGTCAT 60.615 47.826 0.00 0.00 42.44 3.06
133 134 4.319177 GTGCTTGGTAGTCTCAAGTCATT 58.681 43.478 0.00 0.00 42.44 2.57
134 135 4.153117 GTGCTTGGTAGTCTCAAGTCATTG 59.847 45.833 0.00 0.00 42.44 2.82
135 136 4.040339 TGCTTGGTAGTCTCAAGTCATTGA 59.960 41.667 0.00 0.00 43.20 2.57
136 137 4.997395 GCTTGGTAGTCTCAAGTCATTGAA 59.003 41.667 0.00 0.00 44.68 2.69
137 138 5.470098 GCTTGGTAGTCTCAAGTCATTGAAA 59.530 40.000 0.00 0.00 44.68 2.69
138 139 6.348050 GCTTGGTAGTCTCAAGTCATTGAAAG 60.348 42.308 0.00 0.00 44.68 2.62
139 140 6.174720 TGGTAGTCTCAAGTCATTGAAAGT 57.825 37.500 0.00 0.00 44.68 2.66
140 141 7.297936 TGGTAGTCTCAAGTCATTGAAAGTA 57.702 36.000 0.00 0.00 44.68 2.24
141 142 7.907389 TGGTAGTCTCAAGTCATTGAAAGTAT 58.093 34.615 0.00 0.00 44.68 2.12
142 143 7.819415 TGGTAGTCTCAAGTCATTGAAAGTATG 59.181 37.037 0.00 0.00 44.68 2.39
143 144 6.734104 AGTCTCAAGTCATTGAAAGTATGC 57.266 37.500 0.00 0.00 44.68 3.14
144 145 6.233434 AGTCTCAAGTCATTGAAAGTATGCA 58.767 36.000 0.00 0.00 44.68 3.96
145 146 6.883217 AGTCTCAAGTCATTGAAAGTATGCAT 59.117 34.615 3.79 3.79 44.68 3.96
146 147 6.965500 GTCTCAAGTCATTGAAAGTATGCATG 59.035 38.462 10.16 0.00 44.68 4.06
147 148 5.643664 TCAAGTCATTGAAAGTATGCATGC 58.356 37.500 11.82 11.82 42.47 4.06
148 149 4.644103 AGTCATTGAAAGTATGCATGCC 57.356 40.909 16.68 0.00 0.00 4.40
149 150 3.065786 AGTCATTGAAAGTATGCATGCCG 59.934 43.478 16.68 0.00 0.00 5.69
150 151 2.121786 CATTGAAAGTATGCATGCCGC 58.878 47.619 16.68 5.14 42.89 6.53
159 160 3.506108 GCATGCCGCACATCTCTT 58.494 55.556 6.36 0.00 41.79 2.85
160 161 2.694065 GCATGCCGCACATCTCTTA 58.306 52.632 6.36 0.00 41.79 2.10
161 162 1.233019 GCATGCCGCACATCTCTTAT 58.767 50.000 6.36 0.00 41.79 1.73
162 163 1.605710 GCATGCCGCACATCTCTTATT 59.394 47.619 6.36 0.00 41.79 1.40
163 164 2.603892 GCATGCCGCACATCTCTTATTG 60.604 50.000 6.36 0.00 41.79 1.90
164 165 1.667236 TGCCGCACATCTCTTATTGG 58.333 50.000 0.00 0.00 0.00 3.16
165 166 1.065491 TGCCGCACATCTCTTATTGGT 60.065 47.619 0.00 0.00 0.00 3.67
166 167 2.017049 GCCGCACATCTCTTATTGGTT 58.983 47.619 0.00 0.00 0.00 3.67
167 168 2.223340 GCCGCACATCTCTTATTGGTTG 60.223 50.000 0.00 0.00 0.00 3.77
168 169 3.270027 CCGCACATCTCTTATTGGTTGA 58.730 45.455 0.00 0.00 0.00 3.18
169 170 3.879295 CCGCACATCTCTTATTGGTTGAT 59.121 43.478 0.00 0.00 0.00 2.57
170 171 5.056480 CCGCACATCTCTTATTGGTTGATA 58.944 41.667 0.00 0.00 0.00 2.15
171 172 5.702670 CCGCACATCTCTTATTGGTTGATAT 59.297 40.000 0.00 0.00 0.00 1.63
172 173 6.347969 CCGCACATCTCTTATTGGTTGATATG 60.348 42.308 0.00 0.00 0.00 1.78
173 174 6.203530 CGCACATCTCTTATTGGTTGATATGT 59.796 38.462 0.00 0.00 30.96 2.29
174 175 7.570140 CGCACATCTCTTATTGGTTGATATGTC 60.570 40.741 0.00 0.00 29.24 3.06
175 176 7.227314 GCACATCTCTTATTGGTTGATATGTCA 59.773 37.037 0.00 0.00 29.24 3.58
176 177 9.112725 CACATCTCTTATTGGTTGATATGTCAA 57.887 33.333 0.03 0.03 41.89 3.18
177 178 9.334947 ACATCTCTTATTGGTTGATATGTCAAG 57.665 33.333 4.98 0.00 44.58 3.02
178 179 9.551734 CATCTCTTATTGGTTGATATGTCAAGA 57.448 33.333 4.98 0.00 44.58 3.02
180 181 9.958180 TCTCTTATTGGTTGATATGTCAAGAAA 57.042 29.630 4.98 3.84 44.58 2.52
187 188 9.528018 TTGGTTGATATGTCAAGAAAAAGAAAC 57.472 29.630 4.98 0.00 44.58 2.78
188 189 7.860373 TGGTTGATATGTCAAGAAAAAGAAACG 59.140 33.333 4.98 0.00 44.58 3.60
189 190 8.073768 GGTTGATATGTCAAGAAAAAGAAACGA 58.926 33.333 4.98 0.00 44.58 3.85
190 191 9.107367 GTTGATATGTCAAGAAAAAGAAACGAG 57.893 33.333 4.98 0.00 44.58 4.18
191 192 7.806690 TGATATGTCAAGAAAAAGAAACGAGG 58.193 34.615 0.00 0.00 0.00 4.63
192 193 7.444183 TGATATGTCAAGAAAAAGAAACGAGGT 59.556 33.333 0.00 0.00 0.00 3.85
193 194 5.229921 TGTCAAGAAAAAGAAACGAGGTG 57.770 39.130 0.00 0.00 0.00 4.00
194 195 4.938832 TGTCAAGAAAAAGAAACGAGGTGA 59.061 37.500 0.00 0.00 0.00 4.02
195 196 5.064707 TGTCAAGAAAAAGAAACGAGGTGAG 59.935 40.000 0.00 0.00 0.00 3.51
196 197 5.293569 GTCAAGAAAAAGAAACGAGGTGAGA 59.706 40.000 0.00 0.00 0.00 3.27
197 198 6.017852 GTCAAGAAAAAGAAACGAGGTGAGAT 60.018 38.462 0.00 0.00 0.00 2.75
198 199 7.170998 GTCAAGAAAAAGAAACGAGGTGAGATA 59.829 37.037 0.00 0.00 0.00 1.98
199 200 7.713507 TCAAGAAAAAGAAACGAGGTGAGATAA 59.286 33.333 0.00 0.00 0.00 1.75
200 201 7.659652 AGAAAAAGAAACGAGGTGAGATAAG 57.340 36.000 0.00 0.00 0.00 1.73
201 202 7.442656 AGAAAAAGAAACGAGGTGAGATAAGA 58.557 34.615 0.00 0.00 0.00 2.10
202 203 7.600752 AGAAAAAGAAACGAGGTGAGATAAGAG 59.399 37.037 0.00 0.00 0.00 2.85
203 204 5.986501 AAGAAACGAGGTGAGATAAGAGT 57.013 39.130 0.00 0.00 0.00 3.24
204 205 5.986501 AGAAACGAGGTGAGATAAGAGTT 57.013 39.130 0.00 0.00 0.00 3.01
205 206 7.463961 AAGAAACGAGGTGAGATAAGAGTTA 57.536 36.000 0.00 0.00 0.00 2.24
206 207 7.463961 AGAAACGAGGTGAGATAAGAGTTAA 57.536 36.000 0.00 0.00 0.00 2.01
207 208 8.068892 AGAAACGAGGTGAGATAAGAGTTAAT 57.931 34.615 0.00 0.00 0.00 1.40
208 209 7.976734 AGAAACGAGGTGAGATAAGAGTTAATG 59.023 37.037 0.00 0.00 0.00 1.90
209 210 5.593010 ACGAGGTGAGATAAGAGTTAATGC 58.407 41.667 0.00 0.00 0.00 3.56
210 211 5.127194 ACGAGGTGAGATAAGAGTTAATGCA 59.873 40.000 0.00 0.00 0.00 3.96
211 212 5.460419 CGAGGTGAGATAAGAGTTAATGCAC 59.540 44.000 0.00 0.00 0.00 4.57
212 213 6.299805 AGGTGAGATAAGAGTTAATGCACA 57.700 37.500 0.00 0.00 0.00 4.57
213 214 6.711277 AGGTGAGATAAGAGTTAATGCACAA 58.289 36.000 0.00 0.00 0.00 3.33
214 215 6.595716 AGGTGAGATAAGAGTTAATGCACAAC 59.404 38.462 5.12 5.12 0.00 3.32
215 216 6.371548 GGTGAGATAAGAGTTAATGCACAACA 59.628 38.462 13.79 0.00 0.00 3.33
216 217 7.066284 GGTGAGATAAGAGTTAATGCACAACAT 59.934 37.037 13.79 0.95 42.30 2.71
217 218 8.119226 GTGAGATAAGAGTTAATGCACAACATC 58.881 37.037 13.79 8.57 38.34 3.06
218 219 8.043113 TGAGATAAGAGTTAATGCACAACATCT 58.957 33.333 13.79 12.12 38.34 2.90
219 220 9.534565 GAGATAAGAGTTAATGCACAACATCTA 57.465 33.333 13.79 4.09 38.34 1.98
220 221 9.890629 AGATAAGAGTTAATGCACAACATCTAA 57.109 29.630 13.79 0.00 38.34 2.10
222 223 7.986085 AAGAGTTAATGCACAACATCTAAGT 57.014 32.000 13.79 0.00 38.34 2.24
223 224 7.369803 AGAGTTAATGCACAACATCTAAGTG 57.630 36.000 13.79 0.00 38.34 3.16
224 225 6.936900 AGAGTTAATGCACAACATCTAAGTGT 59.063 34.615 13.79 0.00 38.34 3.55
225 226 7.445402 AGAGTTAATGCACAACATCTAAGTGTT 59.555 33.333 13.79 0.00 42.75 3.32
226 227 7.940850 AGTTAATGCACAACATCTAAGTGTTT 58.059 30.769 13.79 0.00 40.17 2.83
227 228 8.413229 AGTTAATGCACAACATCTAAGTGTTTT 58.587 29.630 13.79 0.00 40.17 2.43
228 229 9.672086 GTTAATGCACAACATCTAAGTGTTTTA 57.328 29.630 7.89 0.00 40.17 1.52
229 230 9.891828 TTAATGCACAACATCTAAGTGTTTTAG 57.108 29.630 0.00 0.00 40.17 1.85
230 231 7.744087 ATGCACAACATCTAAGTGTTTTAGA 57.256 32.000 0.00 0.00 40.17 2.10
231 232 7.561021 TGCACAACATCTAAGTGTTTTAGAA 57.439 32.000 1.22 0.00 40.17 2.10
232 233 8.165239 TGCACAACATCTAAGTGTTTTAGAAT 57.835 30.769 1.22 0.00 40.17 2.40
233 234 8.629158 TGCACAACATCTAAGTGTTTTAGAATT 58.371 29.630 1.22 0.00 40.17 2.17
268 269 8.291888 TCGTAAGATGACTTATACGTCTAGAC 57.708 38.462 13.18 13.18 45.01 2.59
270 271 6.542574 AAGATGACTTATACGTCTAGACGG 57.457 41.667 39.68 27.05 45.45 4.79
271 272 7.383572 GTAAGATGACTTATACGTCTAGACGGA 59.616 40.741 39.68 35.92 46.80 4.69
272 273 7.598118 TAAGATGACTTATACGTCTAGACGGAG 59.402 40.741 39.68 31.46 45.90 4.63
282 283 4.073169 GTCTAGACGGAGCGATTAGATG 57.927 50.000 7.22 0.00 32.24 2.90
283 284 3.747010 GTCTAGACGGAGCGATTAGATGA 59.253 47.826 7.22 0.00 32.24 2.92
284 285 3.747010 TCTAGACGGAGCGATTAGATGAC 59.253 47.826 0.00 0.00 0.00 3.06
285 286 2.298610 AGACGGAGCGATTAGATGACA 58.701 47.619 0.00 0.00 0.00 3.58
286 287 2.887783 AGACGGAGCGATTAGATGACAT 59.112 45.455 0.00 0.00 0.00 3.06
287 288 2.983136 GACGGAGCGATTAGATGACATG 59.017 50.000 0.00 0.00 0.00 3.21
288 289 2.623416 ACGGAGCGATTAGATGACATGA 59.377 45.455 0.00 0.00 0.00 3.07
289 290 2.983136 CGGAGCGATTAGATGACATGAC 59.017 50.000 0.00 0.00 0.00 3.06
290 291 3.550842 CGGAGCGATTAGATGACATGACA 60.551 47.826 0.00 0.00 0.00 3.58
291 292 4.371786 GGAGCGATTAGATGACATGACAA 58.628 43.478 0.00 0.00 0.00 3.18
292 293 4.210120 GGAGCGATTAGATGACATGACAAC 59.790 45.833 0.00 0.00 0.00 3.32
293 294 5.016051 AGCGATTAGATGACATGACAACT 57.984 39.130 12.08 12.08 0.00 3.16
294 295 5.423015 AGCGATTAGATGACATGACAACTT 58.577 37.500 12.58 0.00 0.00 2.66
295 296 5.521735 AGCGATTAGATGACATGACAACTTC 59.478 40.000 12.58 5.44 0.00 3.01
296 297 5.291858 GCGATTAGATGACATGACAACTTCA 59.708 40.000 12.58 0.00 39.11 3.02
297 298 6.018425 GCGATTAGATGACATGACAACTTCAT 60.018 38.462 12.58 3.81 46.75 2.57
310 311 8.701908 ATGACAACTTCATGATTGGCTATATT 57.298 30.769 14.49 0.00 43.87 1.28
311 312 9.797642 ATGACAACTTCATGATTGGCTATATTA 57.202 29.630 14.49 0.00 43.87 0.98
312 313 9.797642 TGACAACTTCATGATTGGCTATATTAT 57.202 29.630 14.49 0.00 34.71 1.28
339 340 5.493809 TCATGCTCTCAATCATGACTTTCA 58.506 37.500 0.00 0.00 42.72 2.69
340 341 5.353400 TCATGCTCTCAATCATGACTTTCAC 59.647 40.000 0.00 0.00 42.72 3.18
341 342 4.005650 TGCTCTCAATCATGACTTTCACC 58.994 43.478 0.00 0.00 0.00 4.02
342 343 3.376546 GCTCTCAATCATGACTTTCACCC 59.623 47.826 0.00 0.00 0.00 4.61
343 344 4.841422 CTCTCAATCATGACTTTCACCCT 58.159 43.478 0.00 0.00 0.00 4.34
344 345 4.582869 TCTCAATCATGACTTTCACCCTG 58.417 43.478 0.00 0.00 0.00 4.45
345 346 3.084039 TCAATCATGACTTTCACCCTGC 58.916 45.455 0.00 0.00 0.00 4.85
346 347 1.742761 ATCATGACTTTCACCCTGCG 58.257 50.000 0.00 0.00 0.00 5.18
361 362 2.864343 CCCTGCGTAGATTTTAACGAGG 59.136 50.000 0.53 3.37 41.55 4.63
367 368 4.974888 GCGTAGATTTTAACGAGGGTAGAG 59.025 45.833 0.00 0.00 41.55 2.43
372 373 1.856629 TTAACGAGGGTAGAGGTGGG 58.143 55.000 0.00 0.00 0.00 4.61
383 384 2.127651 AGAGGTGGGGAGTGGTAAAA 57.872 50.000 0.00 0.00 0.00 1.52
385 386 3.810623 AGAGGTGGGGAGTGGTAAAATA 58.189 45.455 0.00 0.00 0.00 1.40
442 445 4.246458 AGTTTCGAGTGAATCTACCTTGC 58.754 43.478 0.00 0.00 33.43 4.01
443 446 2.961526 TCGAGTGAATCTACCTTGCC 57.038 50.000 0.00 0.00 0.00 4.52
444 447 2.176045 TCGAGTGAATCTACCTTGCCA 58.824 47.619 0.00 0.00 0.00 4.92
446 449 2.093973 CGAGTGAATCTACCTTGCCACT 60.094 50.000 0.00 0.00 37.55 4.00
447 450 3.526534 GAGTGAATCTACCTTGCCACTC 58.473 50.000 0.00 0.00 42.11 3.51
448 451 2.906389 AGTGAATCTACCTTGCCACTCA 59.094 45.455 0.00 0.00 29.93 3.41
450 453 4.018960 AGTGAATCTACCTTGCCACTCAAT 60.019 41.667 0.00 0.00 33.57 2.57
451 454 5.189736 AGTGAATCTACCTTGCCACTCAATA 59.810 40.000 0.00 0.00 33.57 1.90
551 554 1.064803 CAGAGCTCCTACGTAGCAGTG 59.935 57.143 17.41 2.71 42.62 3.66
556 559 2.223525 GCTCCTACGTAGCAGTGGTAAG 60.224 54.545 17.41 12.82 39.83 2.34
557 560 1.747355 TCCTACGTAGCAGTGGTAAGC 59.253 52.381 17.41 0.00 0.00 3.09
558 561 1.749634 CCTACGTAGCAGTGGTAAGCT 59.250 52.381 17.41 5.67 44.55 3.74
559 562 2.947652 CCTACGTAGCAGTGGTAAGCTA 59.052 50.000 17.41 6.38 42.05 3.32
560 563 3.003482 CCTACGTAGCAGTGGTAAGCTAG 59.997 52.174 17.41 13.40 43.39 3.42
561 564 1.134560 ACGTAGCAGTGGTAAGCTAGC 59.865 52.381 14.09 6.62 43.39 3.42
562 565 1.536284 CGTAGCAGTGGTAAGCTAGCC 60.536 57.143 12.13 0.00 43.39 3.93
563 566 0.744874 TAGCAGTGGTAAGCTAGCCG 59.255 55.000 12.13 0.00 42.05 5.52
564 567 1.218316 GCAGTGGTAAGCTAGCCGT 59.782 57.895 12.13 1.91 0.00 5.68
565 568 1.084370 GCAGTGGTAAGCTAGCCGTG 61.084 60.000 12.13 0.00 0.00 4.94
566 569 0.460284 CAGTGGTAAGCTAGCCGTGG 60.460 60.000 12.13 0.00 0.00 4.94
567 570 1.153429 GTGGTAAGCTAGCCGTGGG 60.153 63.158 12.13 0.00 0.00 4.61
568 571 1.305465 TGGTAAGCTAGCCGTGGGA 60.305 57.895 12.13 0.00 0.00 4.37
569 572 0.905809 TGGTAAGCTAGCCGTGGGAA 60.906 55.000 12.13 0.00 0.00 3.97
570 573 0.251073 GGTAAGCTAGCCGTGGGAAA 59.749 55.000 12.13 0.00 0.00 3.13
571 574 1.134189 GGTAAGCTAGCCGTGGGAAAT 60.134 52.381 12.13 0.00 0.00 2.17
572 575 1.940613 GTAAGCTAGCCGTGGGAAATG 59.059 52.381 12.13 0.00 0.00 2.32
573 576 1.032114 AAGCTAGCCGTGGGAAATGC 61.032 55.000 12.13 0.00 0.00 3.56
574 577 1.748879 GCTAGCCGTGGGAAATGCA 60.749 57.895 2.29 0.00 0.00 3.96
575 578 1.103398 GCTAGCCGTGGGAAATGCAT 61.103 55.000 2.29 0.00 0.00 3.96
576 579 0.947244 CTAGCCGTGGGAAATGCATC 59.053 55.000 0.00 0.00 0.00 3.91
577 580 0.254462 TAGCCGTGGGAAATGCATCA 59.746 50.000 0.00 0.00 0.00 3.07
578 581 1.139520 GCCGTGGGAAATGCATCAC 59.860 57.895 0.00 2.62 0.00 3.06
584 587 4.630894 GTGGGAAATGCATCACGAATAA 57.369 40.909 0.00 0.00 0.00 1.40
585 588 5.186996 GTGGGAAATGCATCACGAATAAT 57.813 39.130 0.00 0.00 0.00 1.28
586 589 6.312399 GTGGGAAATGCATCACGAATAATA 57.688 37.500 0.00 0.00 0.00 0.98
587 590 6.142817 GTGGGAAATGCATCACGAATAATAC 58.857 40.000 0.00 0.00 0.00 1.89
588 591 6.017109 GTGGGAAATGCATCACGAATAATACT 60.017 38.462 0.00 0.00 0.00 2.12
589 592 6.545666 TGGGAAATGCATCACGAATAATACTT 59.454 34.615 0.00 0.00 0.00 2.24
590 593 7.717436 TGGGAAATGCATCACGAATAATACTTA 59.283 33.333 0.00 0.00 0.00 2.24
591 594 8.730680 GGGAAATGCATCACGAATAATACTTAT 58.269 33.333 0.00 0.00 0.00 1.73
603 606 8.240682 ACGAATAATACTTATGCAAGCAAAACA 58.759 29.630 0.00 0.00 34.94 2.83
618 621 4.949856 AGCAAAACACTGTATAGAATGGGG 59.050 41.667 0.00 0.00 0.00 4.96
693 696 2.370281 ACACGTCAGCATTCAGGTAG 57.630 50.000 0.00 0.00 0.00 3.18
803 807 2.295602 ACCCACCGTACCATCACCC 61.296 63.158 0.00 0.00 0.00 4.61
818 822 0.744414 CACCCACAACGCCTATCCAG 60.744 60.000 0.00 0.00 0.00 3.86
859 863 2.083774 CTTCTCTCGCTCACTCACTCT 58.916 52.381 0.00 0.00 0.00 3.24
860 864 1.447945 TCTCTCGCTCACTCACTCTG 58.552 55.000 0.00 0.00 0.00 3.35
861 865 0.451383 CTCTCGCTCACTCACTCTGG 59.549 60.000 0.00 0.00 0.00 3.86
862 866 0.250945 TCTCGCTCACTCACTCTGGT 60.251 55.000 0.00 0.00 0.00 4.00
935 959 2.724454 TCTAGCCAAGTTAGCTCGAGT 58.276 47.619 15.13 3.51 41.83 4.18
943 967 2.622436 AGTTAGCTCGAGTTCCATTGC 58.378 47.619 15.13 0.00 0.00 3.56
962 986 3.833442 TGCCATAATACGAGCATCTACG 58.167 45.455 0.00 0.00 0.00 3.51
974 998 1.016627 CATCTACGCACCCACATTGG 58.983 55.000 0.00 0.00 37.25 3.16
1641 1676 2.270205 CCGATGCTCTGGCCAACT 59.730 61.111 7.01 0.00 37.74 3.16
1723 1758 4.083862 GGGCGCCGGAGTTCTCTT 62.084 66.667 22.54 0.00 0.00 2.85
1813 1849 3.961408 ACTGTGAGAGTGGTCAGTAGTTT 59.039 43.478 0.00 0.00 39.01 2.66
1814 1850 4.202161 ACTGTGAGAGTGGTCAGTAGTTTG 60.202 45.833 0.00 0.00 39.01 2.93
1815 1851 3.704566 TGTGAGAGTGGTCAGTAGTTTGT 59.295 43.478 0.00 0.00 0.00 2.83
1816 1852 4.051922 GTGAGAGTGGTCAGTAGTTTGTG 58.948 47.826 0.00 0.00 0.00 3.33
1817 1853 3.060602 GAGAGTGGTCAGTAGTTTGTGC 58.939 50.000 0.00 0.00 0.00 4.57
1854 1894 1.170442 TGCATGTGTCTGCTGGATTG 58.830 50.000 0.00 0.00 42.75 2.67
1856 1896 1.542915 GCATGTGTCTGCTGGATTGTT 59.457 47.619 0.00 0.00 39.12 2.83
2005 2047 2.357327 TGTGTCTTATAGCGTGCGTT 57.643 45.000 0.00 0.00 0.00 4.84
2006 2048 2.679450 TGTGTCTTATAGCGTGCGTTT 58.321 42.857 0.00 0.00 0.00 3.60
2007 2049 3.061322 TGTGTCTTATAGCGTGCGTTTT 58.939 40.909 0.00 0.00 0.00 2.43
2023 2065 3.994392 GCGTTTTTCTACAGGTCTGATGA 59.006 43.478 4.84 0.07 0.00 2.92
2120 2325 6.136541 TGAGTTTGCTCTCCTTTTCTTTTC 57.863 37.500 0.00 0.00 42.13 2.29
2132 2337 6.754193 TCCTTTTCTTTTCTGAGAGAGAGTC 58.246 40.000 0.00 0.00 30.18 3.36
2181 2387 5.200483 TCAAAGAATTGTTCAGACCCAACT 58.800 37.500 0.00 0.00 37.79 3.16
2263 2778 3.738982 TCTCACTTTTTCATGAGCGGAA 58.261 40.909 0.00 0.00 41.82 4.30
2273 2788 4.471904 TCATGAGCGGAAAGTCTGTAAT 57.528 40.909 0.00 0.00 0.00 1.89
2299 2814 2.971307 TGCATTACTTCGTGCAGATGA 58.029 42.857 0.00 0.00 45.60 2.92
2321 2836 5.827797 TGATGCTTCATAGAAAACATACCCC 59.172 40.000 0.00 0.00 0.00 4.95
2322 2837 4.532834 TGCTTCATAGAAAACATACCCCC 58.467 43.478 0.00 0.00 0.00 5.40
2323 2838 4.229582 TGCTTCATAGAAAACATACCCCCT 59.770 41.667 0.00 0.00 0.00 4.79
2325 2840 5.398012 GCTTCATAGAAAACATACCCCCTCT 60.398 44.000 0.00 0.00 0.00 3.69
2376 2891 7.129457 AGGAAGTATTACTTGATGCAGATGA 57.871 36.000 13.69 0.00 33.44 2.92
2401 2916 7.135591 TGGAGGATCAACAAAATTCCTTTTT 57.864 32.000 0.00 0.00 38.71 1.94
2453 2969 8.778358 AGATATCATTTTCTTGCTCGGTTATTC 58.222 33.333 5.32 0.00 0.00 1.75
2454 2970 6.757897 ATCATTTTCTTGCTCGGTTATTCA 57.242 33.333 0.00 0.00 0.00 2.57
2459 2975 7.681939 TTTTCTTGCTCGGTTATTCAACTAT 57.318 32.000 0.00 0.00 34.88 2.12
2464 2980 7.389330 TCTTGCTCGGTTATTCAACTATTTTCA 59.611 33.333 0.00 0.00 34.88 2.69
2487 3003 2.016905 AGGGACCTCCTATTCATCGG 57.983 55.000 0.00 0.00 45.98 4.18
2503 3019 1.969064 CGGCCGGTGTGATGGAAAA 60.969 57.895 20.10 0.00 0.00 2.29
2504 3020 1.883021 GGCCGGTGTGATGGAAAAG 59.117 57.895 1.90 0.00 0.00 2.27
2505 3021 0.608035 GGCCGGTGTGATGGAAAAGA 60.608 55.000 1.90 0.00 0.00 2.52
2506 3022 0.804989 GCCGGTGTGATGGAAAAGAG 59.195 55.000 1.90 0.00 0.00 2.85
2507 3023 0.804989 CCGGTGTGATGGAAAAGAGC 59.195 55.000 0.00 0.00 0.00 4.09
2508 3024 1.611673 CCGGTGTGATGGAAAAGAGCT 60.612 52.381 0.00 0.00 0.00 4.09
2624 3141 5.565834 GCTTCCTTAGATCTAGTTCGGGATG 60.566 48.000 2.02 9.67 0.00 3.51
2626 3143 5.071370 TCCTTAGATCTAGTTCGGGATGTC 58.929 45.833 2.02 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.566759 GCACAATCTAAGACGACTTATGCA 59.433 41.667 18.60 0.00 38.44 3.96
1 2 4.566759 TGCACAATCTAAGACGACTTATGC 59.433 41.667 17.43 17.43 38.75 3.14
2 3 5.275927 CGTGCACAATCTAAGACGACTTATG 60.276 44.000 18.64 6.52 37.85 1.90
3 4 4.798907 CGTGCACAATCTAAGACGACTTAT 59.201 41.667 18.64 0.00 37.85 1.73
4 5 4.163552 CGTGCACAATCTAAGACGACTTA 58.836 43.478 18.64 7.14 37.53 2.24
5 6 2.987149 CGTGCACAATCTAAGACGACTT 59.013 45.455 18.64 5.32 39.81 3.01
6 7 2.596452 CGTGCACAATCTAAGACGACT 58.404 47.619 18.64 0.00 0.00 4.18
7 8 1.059264 GCGTGCACAATCTAAGACGAC 59.941 52.381 18.64 0.00 0.00 4.34
8 9 1.336424 TGCGTGCACAATCTAAGACGA 60.336 47.619 18.64 0.00 0.00 4.20
9 10 1.067693 TGCGTGCACAATCTAAGACG 58.932 50.000 18.64 0.00 0.00 4.18
10 11 2.480419 AGTTGCGTGCACAATCTAAGAC 59.520 45.455 18.64 3.60 0.00 3.01
11 12 2.766313 AGTTGCGTGCACAATCTAAGA 58.234 42.857 18.64 0.00 0.00 2.10
12 13 4.436050 CCTTAGTTGCGTGCACAATCTAAG 60.436 45.833 24.40 24.40 38.80 2.18
13 14 3.435327 CCTTAGTTGCGTGCACAATCTAA 59.565 43.478 18.64 16.04 0.00 2.10
14 15 3.000041 CCTTAGTTGCGTGCACAATCTA 59.000 45.455 18.64 9.98 0.00 1.98
15 16 1.806542 CCTTAGTTGCGTGCACAATCT 59.193 47.619 18.64 10.94 0.00 2.40
16 17 1.729149 GCCTTAGTTGCGTGCACAATC 60.729 52.381 18.64 5.72 0.00 2.67
17 18 0.240945 GCCTTAGTTGCGTGCACAAT 59.759 50.000 18.64 0.00 0.00 2.71
18 19 1.652012 GCCTTAGTTGCGTGCACAA 59.348 52.632 18.64 0.97 0.00 3.33
19 20 2.603247 CGCCTTAGTTGCGTGCACA 61.603 57.895 18.64 0.00 46.59 4.57
20 21 2.173382 CGCCTTAGTTGCGTGCAC 59.827 61.111 6.82 6.82 46.59 4.57
26 27 1.303806 TTTCCCCCGCCTTAGTTGC 60.304 57.895 0.00 0.00 0.00 4.17
27 28 1.303091 CGTTTCCCCCGCCTTAGTTG 61.303 60.000 0.00 0.00 0.00 3.16
28 29 1.002990 CGTTTCCCCCGCCTTAGTT 60.003 57.895 0.00 0.00 0.00 2.24
29 30 1.896122 CTCGTTTCCCCCGCCTTAGT 61.896 60.000 0.00 0.00 0.00 2.24
30 31 1.153429 CTCGTTTCCCCCGCCTTAG 60.153 63.158 0.00 0.00 0.00 2.18
31 32 1.610086 TCTCGTTTCCCCCGCCTTA 60.610 57.895 0.00 0.00 0.00 2.69
32 33 2.926242 TCTCGTTTCCCCCGCCTT 60.926 61.111 0.00 0.00 0.00 4.35
33 34 3.391382 CTCTCGTTTCCCCCGCCT 61.391 66.667 0.00 0.00 0.00 5.52
34 35 2.951101 TTCTCTCGTTTCCCCCGCC 61.951 63.158 0.00 0.00 0.00 6.13
35 36 1.740664 GTTCTCTCGTTTCCCCCGC 60.741 63.158 0.00 0.00 0.00 6.13
36 37 0.320697 AAGTTCTCTCGTTTCCCCCG 59.679 55.000 0.00 0.00 0.00 5.73
37 38 3.690475 TTAAGTTCTCTCGTTTCCCCC 57.310 47.619 0.00 0.00 0.00 5.40
38 39 4.576879 ACATTAAGTTCTCTCGTTTCCCC 58.423 43.478 0.00 0.00 0.00 4.81
39 40 6.555812 AAACATTAAGTTCTCTCGTTTCCC 57.444 37.500 0.00 0.00 40.26 3.97
74 75 8.137437 GGTTAGTTCATTGCATGCAATACTATT 58.863 33.333 34.90 25.58 43.92 1.73
75 76 7.285172 TGGTTAGTTCATTGCATGCAATACTAT 59.715 33.333 34.90 27.15 43.92 2.12
76 77 6.601217 TGGTTAGTTCATTGCATGCAATACTA 59.399 34.615 38.08 35.10 43.92 1.82
77 78 5.418524 TGGTTAGTTCATTGCATGCAATACT 59.581 36.000 38.08 35.98 43.92 2.12
78 79 5.516339 GTGGTTAGTTCATTGCATGCAATAC 59.484 40.000 38.08 32.43 43.92 1.89
79 80 5.184671 TGTGGTTAGTTCATTGCATGCAATA 59.815 36.000 38.08 25.05 43.92 1.90
80 81 4.021280 TGTGGTTAGTTCATTGCATGCAAT 60.021 37.500 34.78 34.78 46.35 3.56
81 82 3.320256 TGTGGTTAGTTCATTGCATGCAA 59.680 39.130 33.57 33.57 40.47 4.08
82 83 2.889678 TGTGGTTAGTTCATTGCATGCA 59.110 40.909 18.46 18.46 0.00 3.96
83 84 3.574284 TGTGGTTAGTTCATTGCATGC 57.426 42.857 11.82 11.82 0.00 4.06
84 85 4.869215 TGTTGTGGTTAGTTCATTGCATG 58.131 39.130 0.00 0.00 0.00 4.06
85 86 5.010922 ACATGTTGTGGTTAGTTCATTGCAT 59.989 36.000 0.00 0.00 0.00 3.96
86 87 4.340666 ACATGTTGTGGTTAGTTCATTGCA 59.659 37.500 0.00 0.00 0.00 4.08
87 88 4.870363 ACATGTTGTGGTTAGTTCATTGC 58.130 39.130 0.00 0.00 0.00 3.56
88 89 5.146460 CGACATGTTGTGGTTAGTTCATTG 58.854 41.667 0.00 0.00 0.00 2.82
89 90 4.819630 ACGACATGTTGTGGTTAGTTCATT 59.180 37.500 18.20 0.00 35.80 2.57
90 91 4.213270 CACGACATGTTGTGGTTAGTTCAT 59.787 41.667 31.04 0.00 37.20 2.57
91 92 3.558006 CACGACATGTTGTGGTTAGTTCA 59.442 43.478 31.04 0.00 37.20 3.18
92 93 3.606153 GCACGACATGTTGTGGTTAGTTC 60.606 47.826 36.07 20.23 43.51 3.01
93 94 2.289547 GCACGACATGTTGTGGTTAGTT 59.710 45.455 36.07 5.66 43.51 2.24
94 95 1.871039 GCACGACATGTTGTGGTTAGT 59.129 47.619 36.07 6.35 43.51 2.24
95 96 2.594529 GCACGACATGTTGTGGTTAG 57.405 50.000 36.07 18.74 43.51 2.34
99 100 0.040157 CCAAGCACGACATGTTGTGG 60.040 55.000 36.07 24.05 43.51 4.17
100 101 0.662619 ACCAAGCACGACATGTTGTG 59.337 50.000 33.28 33.28 45.52 3.33
101 102 2.143122 CTACCAAGCACGACATGTTGT 58.857 47.619 13.26 13.26 0.00 3.32
102 103 2.143122 ACTACCAAGCACGACATGTTG 58.857 47.619 11.78 11.78 0.00 3.33
103 104 2.037251 AGACTACCAAGCACGACATGTT 59.963 45.455 0.00 0.00 0.00 2.71
104 105 1.618837 AGACTACCAAGCACGACATGT 59.381 47.619 0.00 0.00 0.00 3.21
105 106 2.263077 GAGACTACCAAGCACGACATG 58.737 52.381 0.00 0.00 0.00 3.21
106 107 1.893137 TGAGACTACCAAGCACGACAT 59.107 47.619 0.00 0.00 0.00 3.06
107 108 1.324383 TGAGACTACCAAGCACGACA 58.676 50.000 0.00 0.00 0.00 4.35
108 109 2.288273 ACTTGAGACTACCAAGCACGAC 60.288 50.000 0.00 0.00 43.45 4.34
109 110 1.961394 ACTTGAGACTACCAAGCACGA 59.039 47.619 0.00 0.00 43.45 4.35
110 111 2.288213 TGACTTGAGACTACCAAGCACG 60.288 50.000 0.00 0.00 43.45 5.34
111 112 3.386768 TGACTTGAGACTACCAAGCAC 57.613 47.619 0.00 0.00 43.45 4.40
112 113 4.040339 TCAATGACTTGAGACTACCAAGCA 59.960 41.667 0.00 0.00 43.45 3.91
113 114 4.569943 TCAATGACTTGAGACTACCAAGC 58.430 43.478 0.00 0.00 43.45 4.01
114 115 6.708054 ACTTTCAATGACTTGAGACTACCAAG 59.292 38.462 0.00 0.00 42.19 3.61
115 116 6.591935 ACTTTCAATGACTTGAGACTACCAA 58.408 36.000 0.00 0.00 42.19 3.67
116 117 6.174720 ACTTTCAATGACTTGAGACTACCA 57.825 37.500 0.00 0.00 42.19 3.25
117 118 7.201565 GCATACTTTCAATGACTTGAGACTACC 60.202 40.741 0.00 0.00 42.19 3.18
118 119 7.331934 TGCATACTTTCAATGACTTGAGACTAC 59.668 37.037 0.00 0.00 42.19 2.73
119 120 7.386059 TGCATACTTTCAATGACTTGAGACTA 58.614 34.615 0.00 0.00 42.19 2.59
120 121 6.233434 TGCATACTTTCAATGACTTGAGACT 58.767 36.000 0.00 0.00 42.19 3.24
121 122 6.486253 TGCATACTTTCAATGACTTGAGAC 57.514 37.500 0.00 0.00 42.19 3.36
122 123 6.403964 GCATGCATACTTTCAATGACTTGAGA 60.404 38.462 14.21 0.00 42.19 3.27
123 124 5.742453 GCATGCATACTTTCAATGACTTGAG 59.258 40.000 14.21 0.00 42.19 3.02
124 125 5.393352 GGCATGCATACTTTCAATGACTTGA 60.393 40.000 21.36 0.00 39.62 3.02
125 126 4.802039 GGCATGCATACTTTCAATGACTTG 59.198 41.667 21.36 0.00 0.00 3.16
126 127 4.439153 CGGCATGCATACTTTCAATGACTT 60.439 41.667 21.36 0.00 0.00 3.01
127 128 3.065786 CGGCATGCATACTTTCAATGACT 59.934 43.478 21.36 0.00 0.00 3.41
128 129 3.365832 CGGCATGCATACTTTCAATGAC 58.634 45.455 21.36 0.00 0.00 3.06
129 130 2.223548 GCGGCATGCATACTTTCAATGA 60.224 45.455 21.36 0.00 45.45 2.57
130 131 2.121786 GCGGCATGCATACTTTCAATG 58.878 47.619 21.36 0.00 45.45 2.82
131 132 2.497107 GCGGCATGCATACTTTCAAT 57.503 45.000 21.36 0.00 45.45 2.57
142 143 1.233019 ATAAGAGATGTGCGGCATGC 58.767 50.000 9.90 9.90 46.70 4.06
143 144 2.031420 CCAATAAGAGATGTGCGGCATG 60.031 50.000 5.72 0.00 38.06 4.06
144 145 2.224606 CCAATAAGAGATGTGCGGCAT 58.775 47.619 5.72 0.00 41.24 4.40
145 146 1.065491 ACCAATAAGAGATGTGCGGCA 60.065 47.619 0.00 0.00 0.00 5.69
146 147 1.668419 ACCAATAAGAGATGTGCGGC 58.332 50.000 0.00 0.00 0.00 6.53
147 148 3.270027 TCAACCAATAAGAGATGTGCGG 58.730 45.455 0.00 0.00 0.00 5.69
148 149 6.203530 ACATATCAACCAATAAGAGATGTGCG 59.796 38.462 0.00 0.00 41.18 5.34
149 150 7.227314 TGACATATCAACCAATAAGAGATGTGC 59.773 37.037 6.64 1.13 42.33 4.57
150 151 8.667076 TGACATATCAACCAATAAGAGATGTG 57.333 34.615 6.64 0.00 42.33 3.21
151 152 9.334947 CTTGACATATCAACCAATAAGAGATGT 57.665 33.333 0.00 0.00 44.20 3.06
152 153 9.551734 TCTTGACATATCAACCAATAAGAGATG 57.448 33.333 0.00 0.00 40.01 2.90
154 155 9.958180 TTTCTTGACATATCAACCAATAAGAGA 57.042 29.630 0.00 0.00 40.01 3.10
161 162 9.528018 GTTTCTTTTTCTTGACATATCAACCAA 57.472 29.630 0.00 0.00 40.01 3.67
162 163 7.860373 CGTTTCTTTTTCTTGACATATCAACCA 59.140 33.333 0.00 0.00 40.01 3.67
163 164 8.073768 TCGTTTCTTTTTCTTGACATATCAACC 58.926 33.333 0.00 0.00 40.01 3.77
164 165 9.107367 CTCGTTTCTTTTTCTTGACATATCAAC 57.893 33.333 0.00 0.00 40.01 3.18
165 166 8.289618 CCTCGTTTCTTTTTCTTGACATATCAA 58.710 33.333 0.00 0.00 42.73 2.57
166 167 7.444183 ACCTCGTTTCTTTTTCTTGACATATCA 59.556 33.333 0.00 0.00 0.00 2.15
167 168 7.746475 CACCTCGTTTCTTTTTCTTGACATATC 59.254 37.037 0.00 0.00 0.00 1.63
168 169 7.444183 TCACCTCGTTTCTTTTTCTTGACATAT 59.556 33.333 0.00 0.00 0.00 1.78
169 170 6.764085 TCACCTCGTTTCTTTTTCTTGACATA 59.236 34.615 0.00 0.00 0.00 2.29
170 171 5.588648 TCACCTCGTTTCTTTTTCTTGACAT 59.411 36.000 0.00 0.00 0.00 3.06
171 172 4.938832 TCACCTCGTTTCTTTTTCTTGACA 59.061 37.500 0.00 0.00 0.00 3.58
172 173 5.293569 TCTCACCTCGTTTCTTTTTCTTGAC 59.706 40.000 0.00 0.00 0.00 3.18
173 174 5.424757 TCTCACCTCGTTTCTTTTTCTTGA 58.575 37.500 0.00 0.00 0.00 3.02
174 175 5.734855 TCTCACCTCGTTTCTTTTTCTTG 57.265 39.130 0.00 0.00 0.00 3.02
175 176 7.931948 TCTTATCTCACCTCGTTTCTTTTTCTT 59.068 33.333 0.00 0.00 0.00 2.52
176 177 7.442656 TCTTATCTCACCTCGTTTCTTTTTCT 58.557 34.615 0.00 0.00 0.00 2.52
177 178 7.385478 ACTCTTATCTCACCTCGTTTCTTTTTC 59.615 37.037 0.00 0.00 0.00 2.29
178 179 7.217906 ACTCTTATCTCACCTCGTTTCTTTTT 58.782 34.615 0.00 0.00 0.00 1.94
179 180 6.760291 ACTCTTATCTCACCTCGTTTCTTTT 58.240 36.000 0.00 0.00 0.00 2.27
180 181 6.347859 ACTCTTATCTCACCTCGTTTCTTT 57.652 37.500 0.00 0.00 0.00 2.52
181 182 5.986501 ACTCTTATCTCACCTCGTTTCTT 57.013 39.130 0.00 0.00 0.00 2.52
182 183 5.986501 AACTCTTATCTCACCTCGTTTCT 57.013 39.130 0.00 0.00 0.00 2.52
183 184 7.254151 GCATTAACTCTTATCTCACCTCGTTTC 60.254 40.741 0.00 0.00 0.00 2.78
184 185 6.535508 GCATTAACTCTTATCTCACCTCGTTT 59.464 38.462 0.00 0.00 0.00 3.60
185 186 6.043411 GCATTAACTCTTATCTCACCTCGTT 58.957 40.000 0.00 0.00 0.00 3.85
186 187 5.127194 TGCATTAACTCTTATCTCACCTCGT 59.873 40.000 0.00 0.00 0.00 4.18
187 188 5.460419 GTGCATTAACTCTTATCTCACCTCG 59.540 44.000 0.00 0.00 0.00 4.63
188 189 6.341316 TGTGCATTAACTCTTATCTCACCTC 58.659 40.000 0.00 0.00 0.00 3.85
189 190 6.299805 TGTGCATTAACTCTTATCTCACCT 57.700 37.500 0.00 0.00 0.00 4.00
190 191 6.371548 TGTTGTGCATTAACTCTTATCTCACC 59.628 38.462 15.09 0.00 0.00 4.02
191 192 7.364522 TGTTGTGCATTAACTCTTATCTCAC 57.635 36.000 15.09 0.00 0.00 3.51
192 193 8.043113 AGATGTTGTGCATTAACTCTTATCTCA 58.957 33.333 15.09 0.00 38.06 3.27
193 194 8.430801 AGATGTTGTGCATTAACTCTTATCTC 57.569 34.615 15.09 4.50 38.06 2.75
194 195 9.890629 TTAGATGTTGTGCATTAACTCTTATCT 57.109 29.630 15.09 15.21 38.06 1.98
196 197 9.672673 ACTTAGATGTTGTGCATTAACTCTTAT 57.327 29.630 15.09 3.71 38.06 1.73
197 198 8.935844 CACTTAGATGTTGTGCATTAACTCTTA 58.064 33.333 15.09 9.64 38.06 2.10
198 199 7.445402 ACACTTAGATGTTGTGCATTAACTCTT 59.555 33.333 15.09 5.90 38.06 2.85
199 200 6.936900 ACACTTAGATGTTGTGCATTAACTCT 59.063 34.615 15.09 15.42 38.06 3.24
200 201 7.133891 ACACTTAGATGTTGTGCATTAACTC 57.866 36.000 15.09 10.90 38.06 3.01
201 202 7.510549 AACACTTAGATGTTGTGCATTAACT 57.489 32.000 15.09 3.31 41.29 2.24
202 203 8.574196 AAAACACTTAGATGTTGTGCATTAAC 57.426 30.769 9.19 9.19 42.01 2.01
203 204 9.891828 CTAAAACACTTAGATGTTGTGCATTAA 57.108 29.630 0.00 0.00 42.01 1.40
204 205 9.278978 TCTAAAACACTTAGATGTTGTGCATTA 57.721 29.630 0.00 0.00 42.01 1.90
205 206 8.165239 TCTAAAACACTTAGATGTTGTGCATT 57.835 30.769 0.00 0.00 42.01 3.56
206 207 7.744087 TCTAAAACACTTAGATGTTGTGCAT 57.256 32.000 0.00 0.00 42.01 3.96
207 208 7.561021 TTCTAAAACACTTAGATGTTGTGCA 57.439 32.000 0.00 0.00 42.01 4.57
236 237 9.577110 ACGTATAAGTCATCTTACGAAAATCAA 57.423 29.630 8.16 0.00 37.65 2.57
237 238 9.229784 GACGTATAAGTCATCTTACGAAAATCA 57.770 33.333 13.16 0.00 37.65 2.57
238 239 9.448294 AGACGTATAAGTCATCTTACGAAAATC 57.552 33.333 19.05 0.00 43.24 2.17
240 241 9.926751 CTAGACGTATAAGTCATCTTACGAAAA 57.073 33.333 19.05 0.00 43.24 2.29
241 242 9.317936 TCTAGACGTATAAGTCATCTTACGAAA 57.682 33.333 19.05 0.00 43.24 3.46
242 243 8.759641 GTCTAGACGTATAAGTCATCTTACGAA 58.240 37.037 19.05 0.00 43.24 3.85
243 244 8.291888 GTCTAGACGTATAAGTCATCTTACGA 57.708 38.462 19.05 3.97 43.24 3.43
261 262 3.747010 TCATCTAATCGCTCCGTCTAGAC 59.253 47.826 13.18 13.18 29.69 2.59
262 263 3.747010 GTCATCTAATCGCTCCGTCTAGA 59.253 47.826 0.00 0.00 0.00 2.43
263 264 3.498777 TGTCATCTAATCGCTCCGTCTAG 59.501 47.826 0.00 0.00 0.00 2.43
264 265 3.473625 TGTCATCTAATCGCTCCGTCTA 58.526 45.455 0.00 0.00 0.00 2.59
265 266 2.298610 TGTCATCTAATCGCTCCGTCT 58.701 47.619 0.00 0.00 0.00 4.18
266 267 2.776312 TGTCATCTAATCGCTCCGTC 57.224 50.000 0.00 0.00 0.00 4.79
267 268 2.623416 TCATGTCATCTAATCGCTCCGT 59.377 45.455 0.00 0.00 0.00 4.69
268 269 2.983136 GTCATGTCATCTAATCGCTCCG 59.017 50.000 0.00 0.00 0.00 4.63
269 270 3.982475 TGTCATGTCATCTAATCGCTCC 58.018 45.455 0.00 0.00 0.00 4.70
270 271 5.046529 AGTTGTCATGTCATCTAATCGCTC 58.953 41.667 2.23 0.00 0.00 5.03
271 272 5.016051 AGTTGTCATGTCATCTAATCGCT 57.984 39.130 2.23 0.00 0.00 4.93
272 273 5.291858 TGAAGTTGTCATGTCATCTAATCGC 59.708 40.000 4.32 0.00 0.00 4.58
273 274 6.892310 TGAAGTTGTCATGTCATCTAATCG 57.108 37.500 4.32 0.00 0.00 3.34
286 287 9.797642 ATAATATAGCCAATCATGAAGTTGTCA 57.202 29.630 0.00 0.00 41.67 3.58
318 319 4.639310 GGTGAAAGTCATGATTGAGAGCAT 59.361 41.667 0.00 0.00 30.85 3.79
319 320 4.005650 GGTGAAAGTCATGATTGAGAGCA 58.994 43.478 0.00 0.00 30.85 4.26
320 321 3.376546 GGGTGAAAGTCATGATTGAGAGC 59.623 47.826 0.00 0.00 30.85 4.09
321 322 4.634883 CAGGGTGAAAGTCATGATTGAGAG 59.365 45.833 0.00 0.00 30.85 3.20
322 323 4.582869 CAGGGTGAAAGTCATGATTGAGA 58.417 43.478 0.00 0.00 30.85 3.27
323 324 3.128242 GCAGGGTGAAAGTCATGATTGAG 59.872 47.826 0.00 0.00 30.85 3.02
324 325 3.084039 GCAGGGTGAAAGTCATGATTGA 58.916 45.455 0.00 0.00 0.00 2.57
325 326 2.159476 CGCAGGGTGAAAGTCATGATTG 60.159 50.000 0.00 0.00 0.00 2.67
326 327 2.086869 CGCAGGGTGAAAGTCATGATT 58.913 47.619 0.00 0.00 0.00 2.57
327 328 1.003580 ACGCAGGGTGAAAGTCATGAT 59.996 47.619 0.00 0.00 0.00 2.45
328 329 0.396435 ACGCAGGGTGAAAGTCATGA 59.604 50.000 0.00 0.00 0.00 3.07
329 330 2.002586 CTACGCAGGGTGAAAGTCATG 58.997 52.381 0.00 0.00 0.00 3.07
330 331 1.899814 TCTACGCAGGGTGAAAGTCAT 59.100 47.619 0.00 0.00 0.00 3.06
331 332 1.334160 TCTACGCAGGGTGAAAGTCA 58.666 50.000 0.00 0.00 0.00 3.41
332 333 2.674796 ATCTACGCAGGGTGAAAGTC 57.325 50.000 0.00 0.00 0.00 3.01
333 334 3.418684 AAATCTACGCAGGGTGAAAGT 57.581 42.857 0.00 0.00 0.00 2.66
334 335 5.628134 GTTAAAATCTACGCAGGGTGAAAG 58.372 41.667 0.00 0.00 0.00 2.62
335 336 4.152759 CGTTAAAATCTACGCAGGGTGAAA 59.847 41.667 0.00 0.00 0.00 2.69
336 337 3.680937 CGTTAAAATCTACGCAGGGTGAA 59.319 43.478 0.00 0.00 0.00 3.18
337 338 3.056678 TCGTTAAAATCTACGCAGGGTGA 60.057 43.478 0.00 0.00 37.66 4.02
338 339 3.255725 TCGTTAAAATCTACGCAGGGTG 58.744 45.455 0.00 0.00 37.66 4.61
339 340 3.518590 CTCGTTAAAATCTACGCAGGGT 58.481 45.455 0.00 0.00 37.66 4.34
340 341 2.864343 CCTCGTTAAAATCTACGCAGGG 59.136 50.000 0.00 0.00 37.66 4.45
341 342 2.864343 CCCTCGTTAAAATCTACGCAGG 59.136 50.000 0.00 0.00 37.66 4.85
342 343 3.518590 ACCCTCGTTAAAATCTACGCAG 58.481 45.455 0.00 0.00 37.66 5.18
343 344 3.598019 ACCCTCGTTAAAATCTACGCA 57.402 42.857 0.00 0.00 37.66 5.24
344 345 4.925068 TCTACCCTCGTTAAAATCTACGC 58.075 43.478 0.00 0.00 37.66 4.42
345 346 5.067023 ACCTCTACCCTCGTTAAAATCTACG 59.933 44.000 0.00 0.00 39.03 3.51
346 347 6.271566 CACCTCTACCCTCGTTAAAATCTAC 58.728 44.000 0.00 0.00 0.00 2.59
361 362 0.337428 TACCACTCCCCACCTCTACC 59.663 60.000 0.00 0.00 0.00 3.18
367 368 4.606210 ACAATATTTTACCACTCCCCACC 58.394 43.478 0.00 0.00 0.00 4.61
428 431 3.334583 TGAGTGGCAAGGTAGATTCAC 57.665 47.619 0.00 0.00 0.00 3.18
430 433 7.391148 TTTTATTGAGTGGCAAGGTAGATTC 57.609 36.000 0.00 0.00 40.42 2.52
431 434 6.127619 GCTTTTATTGAGTGGCAAGGTAGATT 60.128 38.462 0.00 0.00 40.42 2.40
433 436 4.700213 GCTTTTATTGAGTGGCAAGGTAGA 59.300 41.667 0.00 0.00 40.42 2.59
434 437 4.142381 GGCTTTTATTGAGTGGCAAGGTAG 60.142 45.833 0.00 0.00 40.42 3.18
435 438 3.761752 GGCTTTTATTGAGTGGCAAGGTA 59.238 43.478 0.00 0.00 40.42 3.08
436 439 2.562738 GGCTTTTATTGAGTGGCAAGGT 59.437 45.455 0.00 0.00 40.42 3.50
437 440 2.562298 TGGCTTTTATTGAGTGGCAAGG 59.438 45.455 0.00 0.00 40.42 3.61
438 441 3.507233 TCTGGCTTTTATTGAGTGGCAAG 59.493 43.478 0.00 0.00 40.42 4.01
440 443 3.084039 CTCTGGCTTTTATTGAGTGGCA 58.916 45.455 0.00 0.00 0.00 4.92
442 445 2.424956 GCCTCTGGCTTTTATTGAGTGG 59.575 50.000 0.73 0.00 46.69 4.00
443 446 3.772060 GCCTCTGGCTTTTATTGAGTG 57.228 47.619 0.73 0.00 46.69 3.51
551 554 0.251073 TTTCCCACGGCTAGCTTACC 59.749 55.000 15.72 0.00 0.00 2.85
556 559 1.103398 ATGCATTTCCCACGGCTAGC 61.103 55.000 6.04 6.04 0.00 3.42
557 560 0.947244 GATGCATTTCCCACGGCTAG 59.053 55.000 0.00 0.00 0.00 3.42
558 561 0.254462 TGATGCATTTCCCACGGCTA 59.746 50.000 0.00 0.00 0.00 3.93
559 562 1.001020 TGATGCATTTCCCACGGCT 60.001 52.632 0.00 0.00 0.00 5.52
560 563 1.139520 GTGATGCATTTCCCACGGC 59.860 57.895 0.00 0.00 0.00 5.68
561 564 1.429021 CGTGATGCATTTCCCACGG 59.571 57.895 23.62 10.55 45.79 4.94
563 566 4.630894 TTATTCGTGATGCATTTCCCAC 57.369 40.909 0.00 3.20 0.00 4.61
564 567 6.061441 AGTATTATTCGTGATGCATTTCCCA 58.939 36.000 0.00 0.00 0.00 4.37
565 568 6.560253 AGTATTATTCGTGATGCATTTCCC 57.440 37.500 0.00 0.00 0.00 3.97
566 569 9.546909 CATAAGTATTATTCGTGATGCATTTCC 57.453 33.333 0.00 0.00 39.78 3.13
567 570 9.055248 GCATAAGTATTATTCGTGATGCATTTC 57.945 33.333 0.00 0.00 39.78 2.17
568 571 8.567104 TGCATAAGTATTATTCGTGATGCATTT 58.433 29.630 0.00 0.00 39.78 2.32
569 572 8.098220 TGCATAAGTATTATTCGTGATGCATT 57.902 30.769 0.00 0.00 39.78 3.56
570 573 7.671495 TGCATAAGTATTATTCGTGATGCAT 57.329 32.000 0.00 0.00 39.78 3.96
571 574 7.489574 TTGCATAAGTATTATTCGTGATGCA 57.510 32.000 2.27 2.27 44.79 3.96
572 575 6.521133 GCTTGCATAAGTATTATTCGTGATGC 59.479 38.462 0.00 0.00 39.78 3.91
573 576 7.575365 TGCTTGCATAAGTATTATTCGTGATG 58.425 34.615 0.00 0.00 39.78 3.07
574 577 7.728847 TGCTTGCATAAGTATTATTCGTGAT 57.271 32.000 0.00 0.00 39.78 3.06
575 578 7.546778 TTGCTTGCATAAGTATTATTCGTGA 57.453 32.000 0.00 0.00 39.78 4.35
576 579 8.523464 GTTTTGCTTGCATAAGTATTATTCGTG 58.477 33.333 0.00 0.00 39.78 4.35
577 580 8.240682 TGTTTTGCTTGCATAAGTATTATTCGT 58.759 29.630 0.00 0.00 39.78 3.85
578 581 8.523464 GTGTTTTGCTTGCATAAGTATTATTCG 58.477 33.333 0.00 0.00 39.78 3.34
579 582 9.573133 AGTGTTTTGCTTGCATAAGTATTATTC 57.427 29.630 0.00 0.00 39.78 1.75
580 583 9.357652 CAGTGTTTTGCTTGCATAAGTATTATT 57.642 29.630 0.00 0.00 39.78 1.40
581 584 8.522830 ACAGTGTTTTGCTTGCATAAGTATTAT 58.477 29.630 0.00 0.00 43.29 1.28
582 585 7.881142 ACAGTGTTTTGCTTGCATAAGTATTA 58.119 30.769 0.00 0.00 36.27 0.98
583 586 6.748132 ACAGTGTTTTGCTTGCATAAGTATT 58.252 32.000 0.00 0.00 36.27 1.89
584 587 6.331369 ACAGTGTTTTGCTTGCATAAGTAT 57.669 33.333 0.00 0.00 36.27 2.12
585 588 5.766150 ACAGTGTTTTGCTTGCATAAGTA 57.234 34.783 0.00 0.00 36.27 2.24
586 589 4.654091 ACAGTGTTTTGCTTGCATAAGT 57.346 36.364 0.00 0.00 36.27 2.24
587 590 7.751732 TCTATACAGTGTTTTGCTTGCATAAG 58.248 34.615 0.00 0.00 36.97 1.73
588 591 7.680442 TCTATACAGTGTTTTGCTTGCATAA 57.320 32.000 0.00 0.00 0.00 1.90
589 592 7.680442 TTCTATACAGTGTTTTGCTTGCATA 57.320 32.000 0.00 0.00 0.00 3.14
590 593 6.573664 TTCTATACAGTGTTTTGCTTGCAT 57.426 33.333 0.00 0.00 0.00 3.96
591 594 6.380995 CATTCTATACAGTGTTTTGCTTGCA 58.619 36.000 0.00 0.00 0.00 4.08
603 606 4.386424 GGCTTTTCCCCCATTCTATACAGT 60.386 45.833 0.00 0.00 0.00 3.55
618 621 7.170828 CCAACAGTAAAAGTAAATGGCTTTTCC 59.829 37.037 1.19 0.00 42.85 3.13
693 696 1.680249 GGACAAGGAATCCTGTGAGCC 60.680 57.143 0.90 7.31 32.13 4.70
803 807 3.398920 CGCTGGATAGGCGTTGTG 58.601 61.111 0.00 0.00 46.37 3.33
818 822 4.927782 TGTGGACAGTGTGGGCGC 62.928 66.667 0.00 0.00 0.00 6.53
820 824 2.186826 GTGTGTGGACAGTGTGGGC 61.187 63.158 0.00 0.00 30.74 5.36
824 828 1.139058 GAGAAGGTGTGTGGACAGTGT 59.861 52.381 0.00 0.00 30.74 3.55
859 863 4.613394 CGTATATATACACGGCGTGAACCA 60.613 45.833 42.65 24.83 36.96 3.67
860 864 3.848019 CGTATATATACACGGCGTGAACC 59.152 47.826 42.65 20.01 36.96 3.62
861 865 3.299020 GCGTATATATACACGGCGTGAAC 59.701 47.826 42.65 24.64 38.57 3.18
862 866 3.491356 GCGTATATATACACGGCGTGAA 58.509 45.455 42.65 27.45 38.57 3.18
935 959 3.814625 TGCTCGTATTATGGCAATGGAA 58.185 40.909 0.00 0.00 0.00 3.53
943 967 3.608506 GTGCGTAGATGCTCGTATTATGG 59.391 47.826 0.00 0.00 35.36 2.74
962 986 2.639327 GCAGGTCCAATGTGGGTGC 61.639 63.158 0.00 0.00 38.32 5.01
974 998 3.927481 GAGGTTGGCCCTGCAGGTC 62.927 68.421 30.63 19.71 46.51 3.85
1111 1140 3.432588 CTGCTGCTGCTGCTGGAC 61.433 66.667 27.67 8.41 40.48 4.02
1452 1487 0.387878 CGAACAGCGAGCTGAGAAGT 60.388 55.000 29.11 5.74 46.30 3.01
1641 1676 2.539338 GCCGTTGTCCAAGAACGCA 61.539 57.895 4.07 0.00 43.83 5.24
1813 1849 2.807470 CCATCACGTACGCGCACA 60.807 61.111 16.72 0.00 42.83 4.57
1814 1850 4.204891 GCCATCACGTACGCGCAC 62.205 66.667 16.72 1.24 42.83 5.34
1815 1851 4.429212 AGCCATCACGTACGCGCA 62.429 61.111 16.72 0.00 42.83 6.09
1816 1852 3.617538 GAGCCATCACGTACGCGC 61.618 66.667 16.72 9.33 42.83 6.86
1817 1853 1.588932 ATGAGCCATCACGTACGCG 60.589 57.895 16.72 3.53 38.57 6.01
1854 1894 7.463515 GCACAACAAATTAACACCTACACAAAC 60.464 37.037 0.00 0.00 0.00 2.93
1856 1896 6.037098 GCACAACAAATTAACACCTACACAA 58.963 36.000 0.00 0.00 0.00 3.33
2005 2047 9.739276 AAATAACATCATCAGACCTGTAGAAAA 57.261 29.630 0.00 0.00 0.00 2.29
2006 2048 9.166173 CAAATAACATCATCAGACCTGTAGAAA 57.834 33.333 0.00 0.00 0.00 2.52
2007 2049 8.321353 ACAAATAACATCATCAGACCTGTAGAA 58.679 33.333 0.00 0.00 0.00 2.10
2023 2065 8.915036 TGTAAACAAGTACCCAACAAATAACAT 58.085 29.630 0.00 0.00 0.00 2.71
2110 2315 7.873739 GAGACTCTCTCTCAGAAAAGAAAAG 57.126 40.000 0.00 0.00 44.62 2.27
2132 2337 3.044986 CGTTCATGCACCAAACTTTGAG 58.955 45.455 2.87 0.00 0.00 3.02
2224 2739 9.653287 AAAGTGAGATGTATTCGAAGTTATGAA 57.347 29.630 3.35 0.00 0.00 2.57
2240 2755 3.686241 TCCGCTCATGAAAAAGTGAGATG 59.314 43.478 6.56 0.00 43.50 2.90
2299 2814 5.103515 AGGGGGTATGTTTTCTATGAAGCAT 60.104 40.000 0.00 0.00 35.18 3.79
2314 2829 3.197116 AGACGTTTTACAGAGGGGGTATG 59.803 47.826 0.00 0.00 0.00 2.39
2315 2830 3.447950 AGACGTTTTACAGAGGGGGTAT 58.552 45.455 0.00 0.00 0.00 2.73
2316 2831 2.893424 AGACGTTTTACAGAGGGGGTA 58.107 47.619 0.00 0.00 0.00 3.69
2317 2832 1.725803 AGACGTTTTACAGAGGGGGT 58.274 50.000 0.00 0.00 0.00 4.95
2318 2833 2.853235 AAGACGTTTTACAGAGGGGG 57.147 50.000 0.00 0.00 0.00 5.40
2321 2836 8.932791 ACATAAATGTAAGACGTTTTACAGAGG 58.067 33.333 28.53 21.32 44.23 3.69
2376 2891 6.940430 AAAGGAATTTTGTTGATCCTCCAT 57.060 33.333 0.00 0.00 41.39 3.41
2422 2938 7.933577 ACCGAGCAAGAAAATGATATCTTCATA 59.066 33.333 3.98 0.00 44.51 2.15
2453 2969 6.267699 AGGAGGTCCCTTTTTGAAAATAGTTG 59.732 38.462 0.00 0.00 44.85 3.16
2454 2970 6.382087 AGGAGGTCCCTTTTTGAAAATAGTT 58.618 36.000 0.00 0.00 44.85 2.24
2459 2975 6.377912 TGAATAGGAGGTCCCTTTTTGAAAA 58.622 36.000 0.00 0.00 44.85 2.29
2464 2980 4.385310 CCGATGAATAGGAGGTCCCTTTTT 60.385 45.833 0.00 0.00 44.85 1.94
2482 2998 2.867793 TTCCATCACACCGGCCGATG 62.868 60.000 30.73 25.88 36.99 3.84
2487 3003 0.804989 CTCTTTTCCATCACACCGGC 59.195 55.000 0.00 0.00 0.00 6.13
2503 3019 1.026718 GGCGGTGCATGTTTAGCTCT 61.027 55.000 0.00 0.00 0.00 4.09
2504 3020 1.429423 GGCGGTGCATGTTTAGCTC 59.571 57.895 0.00 0.00 0.00 4.09
2505 3021 2.046285 GGGCGGTGCATGTTTAGCT 61.046 57.895 0.00 0.00 0.00 3.32
2506 3022 2.339556 TGGGCGGTGCATGTTTAGC 61.340 57.895 0.00 0.00 0.00 3.09
2507 3023 1.240641 TGTGGGCGGTGCATGTTTAG 61.241 55.000 0.00 0.00 0.00 1.85
2508 3024 1.228276 TGTGGGCGGTGCATGTTTA 60.228 52.632 0.00 0.00 0.00 2.01
2592 3108 8.729805 AACTAGATCTAAGGAAGCAGAAAATG 57.270 34.615 3.57 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.