>input_sequence_68563
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--------------------------------------------------------------------ATGGAAGCTCCT
CTGCACCAGCTGGCCCCCATGCAGCAAGCACTGCTCGCCCATCCCCAGAACTGCAAGCACGACGCCGCGGCGACGATGGC
CGCGACGGACATGGCCTGCGTCCAGCAGCAGCAGCAGCTGT---TGCAGCTGCAGCCGGCGGCGGCGAACCCGAACACGC
CCTCGGCCGCGGCGCGGGAGCAGTGCCCGCGGTGCGCGTCGCACGACACCAAGTTCTGCTACTACAACAACTACAACACG
TCGCAGCCGCGCCACTTCTGCCGTGCCTGCCGCCGCTACTGGACGCTCGGGGGCTCCCTCCGCAACGTCCCCATCGGGGG
CTCCACCCGCAAGCGCCTGCGCCCGGCGCCGCAGCAGGCGATGCGCCGCCCGCCCGTCCACTTCGGCGCGCCTCCGC---
CACCGATGCCGGCGCAGTCGCACTCCCAGCAGGCTCCGCAAGGCGGACTTCTCAGCTCGCTGTTCGCGCTAGGCGGGGCG
CCGCTGTTCGAGGGCCGCGTCGGGTTCGACCTCGGCCTCGGCCTGCCCGGGCTGAGCCAGGTGGGGCTCGGCGGCAGCGC
CGGGGAGTTCGGCCTGCACTCCCTCGGGCTCCGGGGCGGCCATGCAGGGACGTCGGCGCCGATGCTCTGGCCAACTGCGT
TCTTGGACAACGGCAATGTGGACACGTGGAAGGTGTCCGGCGGCGGGGCGGCTGCCATGTGGGCGCCGGAGTTCTCTTCT
GCGCCGACGGTAGCACAGGTCGGCGGCAATGGCATGTTTCATGGCGGGGCCCAGATAATGGGAC-AACTGTGA-------
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>chr4B_1_TraesCS4B01G081500
TGCATAAGTCGTCTTAGATTGTGCACGCAACTAAGGCGGGGGAAACGAGAGAACTTAATGTTTATTTACTAATTAATAGT
ATTGCATGCAATGAACTAACCACAACATGTCGTGCTTGGTAGTCTCAAGTCATTGAAAGTATGCATGCCGCACATCTCTT
ATTGGTTGATATGTCAAGAAAAAGAAACGAGGTGAGATAAGAGTTAATGCACAACATCTAAGTGTTTTAGAATTATTTGA
TTTTCGTAAGATGACTTATACGTCTAGACGGAGCGATTAGATGACATGACAACTTCATGATTGGCTATATTATTAATCAT
GCTCTCAATCATGACTTTCACCCTGCGTAGATTTTAACGAGGGTAGAGGTGGGGAGTGGTAAAATATTGTCCA--TTTTT
TACCCTCAGTGTCGTCTTTCGAAGTTTCGAGTGAATCTACCTTGCCACTCAATAAAAGCCAGAGGCAGAAACACGCTGCA
GATGGTAACAGTAGTATAGCTAGCAGTAGCATGTTGCTGTAGTACTAGCTTGGCAGAGCTCCTACGTAGCAGTGGTAAGC
TAGCCGTGGGAAATGCATCACGAATAATACTTATGCAAGCAAAACACTGTATAGAATGGGGGAAAAGCCATTTACTTTTA
CTGTTGGGTTTCAAAACTGTCTGGTGCGGGGAGCATACACGTCAGCATTCAGGTAGGCTCACAGGATTCC-TTGTCCTGC
AAAGATCGAAAGCAACTCTACATGGTCAGTCCCTGCACCCTGCGTACTCATCCCCTCAGCCTTCTGTCACCCACCGTACC
ATCACCCACAACGCCTATCCAGCGCCCACACTGTCCACACACCTTCTCTCGCTCACTCACTCTGGT------------TC
ACGCCGTGTATATATACGCCCTCGCACTTCAATCCCAA--------AACTCACTGGTATCTAGCCAAGTTAGCTCGAGTT
CCATTGCCATAATACGAGCATCTACGCACCCACATTGGACCTGCAG-----GGCCAACCTCGAACGCCATGGAAGCTCCT
CTGCACCAGCTGGCCCCCATGCAGCAAGCACTGCTCGCCCATCCCCAGAACTGCAAGCACGACGCCGCGGCGACGATGGC
CGCGACGGACATGGCCTGCGTCCAGCAGCAGCAGCAGCTGT---TGCAGCTGCAGCCGGCGGCGGCGAACCCGAACACGC
CCTCGGCCGCGGCGCGGGAGCAGTGCCCGCGGTGCGCGTCGCACGACACCAAGTTCTGCTACTACAACAACTACAACACG
TCGCAGCCGCGCCACTTCTGCCGTGCCTGCCGCCGCTACTGGACGCTCGGGGGCTCCCTCCGCAACGTCCCCATCGGGGG
CTCCACCCGCAAGCGCCTGCGCCCGGCGCCGCAGCAGGCGATGCGCCGCCCGCCCGTCCACTTCGGCGCGCCTCCGC---
CACCGATGCCGGCGCAGTCGCACTCCCAGCAGGCTCCGCAAGGCGGACTTCTCAGCTCGCTGTTCGCGCTAGGCGGGGCG
CCGCTGTTCGAGGGCCGCGTCGGGTTCGACCTCGGCCTCGGCCTGCCCGGGCTGAGCCAGGTGGGGCTCGGCGGCAGCGC
CGGGGAGTTCGGCCTGCACTCCCTCGGGCTCCGGGGCGGCCATGCAGGGACGTCGGCGCCGATGCTCTGGCCAACTGCGT
TCTTGGACAACGGCAATGTGGACACGTGGAAGGTGTCCGGCGGCGGGGCGGCTGCCATGTGGGCGCCGGAGTTCTCTTCT
GCGCCGACGGTAGCACAGGTCGGCGGCAATGGCATGTTTCATGGCGGGGCCCAGATAATGGGAC-AACTGTGAGAGTGGT
CAGTAGTTTGTGC----GCGTACGTGATGGCTCATGCATGTGTCTGCTGGATTGTT--TGTGTAGGTGTTAATTTGTTGT
GCAAGTGCATGGCTCGTGTCGTGTCTTGTTCACGTAGTACGTAGTGGTACAAGGAGAGGCCTGTCTAGTTTACAGTTTTG
GTTCCACAGGGGTAGAATGGTCTCTCATGTGTCTTATAGCGTGCGTTTTTCTACAGGTCTGATGATGTTATTTGTTGGGT
ACTT-GTTTACATGCATGTTGATGTTATGATTA-----------------------------------------------
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-----------------------------------TATAATTTACATTATTATCTATAGATTGAGTTTGCTCTCCTTTTC
TTTTCTGAGAGAGAGTCTCAAAGTTTGGTGCATGAACGATCTTCAAAGAATTGTTCAGACCCAA-CTGAAAAAAGAAATG
TCCAAACGATCGTAA-----------------------------------------------------------------
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----TTGAATCTAAAAGTTTCATAACTTCGAATACATCTCACTTTTTCATGAGCGGAAAGTCTGTAATAGTATTGCATTA
CTTCGTGCAGATGATGCTTCATAGAAAACATACCCCCTCTGTAAAACGTCTTACATTTATGTACAAAGGAAGTATTACTT
GATGCAGATGATGGAGGATCAACAAAATTCCTTTTTGTTCTCAAAAAT-CATTTTCTTATGAAGATATCATTTTCTTGCT
CGGTTATTCAACTATTTTCAAAAAGGGACCTCCTATTCATCGGCCGGTGTGATGGAAAAGAGCTAAACATGCACCGCCCA
CACGCCCTTTCGAGCAACCCATTTGCGAGGCATCTCTTTCAAAAAATATATTTTCTGTTTCTTTTTTC-ATTTTCTGCTT
CCTTAGATCTAGTTCGGGATGTCAAAAAAGGCTCATAAAATTTTA-AAAATCGCAATTTTTTA-AATGTTCATGAATATT
AAATCACAACTTTTAAAA-AATGTCCCACATTCTAAAACATATTTACTGATTTGGTAAAAAAAAT--TGGATTTAAAATT
AGTTAATCAAATTTACAAAAATGTTCATTAATTCAAAAT
>chr4D_348
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---------------------------TAGATTTTAACGAGTGTAGACGTGGAGAGTGGTAAATTTTTGTCCAGTTTTTT
TACCATCTGCCTCGCCTTTCGAAGTTTCGACTTTAGAGTGATCGATTCAATA--AAAGCCAGAGGCAGAAACACGCTGCA
GATGGTAACAGTAGTATAGCTAGCAGTAGCATGGTGCTGTGTTACTAGCGTGGCAGAGCTCCTACGTAGCAGTAGTAA--
----------------------------------GCAAGCAAAACTCTGTATAGAATGGGAGAAAAGCCATTTATTTTTA
CTGTTGGGTTTCAAAACTGTCTGGTGCGGGGAGCATACACGTCAGCATTCAGGTA-GCTCACAGGATTCCTTTGTCCTGC
AAAGATCGAAAGCAACTCTACGTGGTCAGTCCCTGCACCCTGCGTACTCATCCCCTCAGCCTTCTGTCACCCACCGTACC
ATCACCTACAACGCCTATCCAACACCCGCACTGTCCACACACCTTCTCTCACTCACTCACTCACTCACTGGCTCTTGCTC
ACGCCGTGTATATATACGCCCTCGCACTTCAATCCCAAAACAGCAAAACTCACTGGTATCTAGCCAAGTTAGCTCGAGCT
CCATTGTCATAATACGAGCATCCACACACCCACATTGCACCTGCAG-----GGCCAACCTCGGACGCCATGGAAGCTCCT
CTGCACCAGCTGGCCCCCATGCAGCAGGCACTGCTCGCCCATCCCCAGAACTGCAAGCACGACGCCGCGGCGACGATGGC
CGCGACGGACATGGCGTGCCTCCAGCAGCAGCAGCAGCAGCTGATGCAGCTGCAGCCGGCGGCGGCGAACCCGAACACGC
CCTCGGGCGCGGCGCGGGAGCAGTGCCCGCGGTGCGCGTCGTACGACACCAAGTTCTGCTACTACAACAACTACAACACG
TCGCAGCCGCGCCACTTCTGCCGCGCCTGCCGCCGCTACTGGACGCTCGGGGGCTCCCTCCGCAACGTCCCCATCGGGGG
CTCCACCCGCAAGCGCCTGCGCCCGGCGCCGCAGCAGGCCATGCGCCGCCCGCCCGTCCACTTCGGCGCGCCTCCGC---
CGCCGATGCCGGCGCAGTCGCACTCCCAGCAGGCTCCGCAAGGCGGCCTTCTCAGCTCGCTGTTCGCGCTCGGCGCGGCG
CCGCTGTTCGAGGGCCGCGTCGGGTTCGACCTCGGCCTCGGCCTGCCCGGGCTGAGCCAGGTGGGGCTCGGAGGCAGCGC
CGGGGAGTTTGGCCTGCACTCCCTCGGGCTCCGGGGCGGCCATGCAGGGACGTCGGCGCCGATGCTCTGGCCGACCGCGT
TCTTGGACAACGGCAATGTGGACACGTGGAAAGTATCCGGCGGCGGGGCGGCTGCCATGTGGGCGCCGGAGTTCTCTCCT
GCACCGGCGGTGGCACAGGTCGGCGGCAATGGCATGTTCCATGGCGGGGCCCAGATAATGTGACAAACTGTGAGAGTGGT
CAGTAGTTGTGTGCGTGGCGTACGTGATGGCTCATGCATGTGTCTGCTGGGTTATGTGTGT--AGGTGTTTATTTTTTCT
GCAAGTGCATGGCTCGTGTCGTGTCTTGTTCACGTAGTACGTAGTGGTACAAGGAGAGGCCTGTCTAGTTTACAGTTTTG
GTTCCACAGGGGTAGAATGGTCTCTCATGTGTCTTATAGCGTGCGTC--TCTACAGGTCTGATGGTGTTATTTGTTGGGT
ACTTGGTTTACATGCATGTTGATGTTATGATTGTACTCCCTCCGTCCCTAGATATAATCTTTTTAGACATTTTAAATAGA
CTACAACATACGGATGTATGTAGACATATTTTAAAGTATAGATTCACTTATTTGGCTTCGTATGTAGTCACTTGTTGAAA
TCTTTAAAAAGACTTATATTTTGTAACGGAGGGAGTATAATTTACATTATTATCTATAAATTGAGTTTGCTCTCGTTTTC
TTTTTTGAGGGAGAGTTTCAAAGTTTGGTGCATGAACGATCTTCAAAGAATTGTTCAGACCCAA-C-GAAAAAAGAAATG
TCCAAACGATCGTAACTTTCTTTAACATAATACAGACGCAAGAGCTCATATATATGTGCATACGCTCACCCCTATGAACG
CACACCCTATTCCTATGAGCACCTCTGAAA-ACTGAGCCGACACGTCATCTTGAGATTTTACGAAGTCATCTTAGACGAC
TCGTAGTTGACGGGAACGTCTTCTCCTACTAAACGTGTATCACCAGAAATCCTGATATAAATTCAAGGATAAATGCGAGC
ACGAGGATTTGAATCCTGGTGGACTGGGATAATACCGTCCTCCTAACCATCTAACTACACGTTGGTTCGTCCAGACGATC
GTAATTAAATCTAAAAATCTCATAACTTTGAATATATCTCACTTTTTCATGAGCGGACAGTCTGTAACAGTATTGCATTA
CTTCGTGCAGATGCTGCTTCATAGAAAAATACTCCTTCC-ATAAAACGTCTTACATTTATGTACAAAGGAAGTATTACTT
GATGCAGATGCTGGAGGATCAACAAAATTCCTTTTCATTCTCAAAAAACCATTTTCTGATGAAGATAACATTTTCTTGCT
CAGTTATTGCACGACTTTCGAAAAGGGACCTCCTATTTATCGACCGGTGTGATGGAAAGAGCTGAAACATGCACCGCCCA
CACGCCCTTTCGGGCAACCCATTTGCGGGGCATCTCTTTCAAAAAATATATTTTCCGTTTCTTTTTTTTATTTTCTGCTT
CCATAAATCTAGTTCGGGATAT-AAAAAAGGCTCACAAAATTTTA-AAAATCCCAATTTTTTTCAATGTTCACGAATATT
AAATCACAAGTTTTTAAA-AAATGTTTCAATGTTCACGAATA-TTACTGATTTGGTAAAAATATTTGTGGATTCAAAATT
AGTTCATCAAATTTAAGAAAATGTTTGTTAATTCAAAAT
>chr4A_448
CAAG----------------------------------------------------------------------------
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--------------------------------------------------TA--AAAGCCAGAGGCAGAAACACGCTGCA
GATGGTAACAGTTGTATAGCTAGCAGTAGCATGTTGCTGTAGTACTAGCTCGGCAGAGCTCCTACGTAGCAGTAGTA---
-------------------------------------------------TATAGAATGGGAGAAAAACCATTTACTTTTA
CTGTGGGGTTTCAAAACTGTCTGGTGCGGGGAGCATACACGTCAGCATTCAGGTA-GCTCACAGGATTCC-TTGTCCTGC
AAAGATCGAAAGCAACTCTACATGGTCAGTCCCTGCACCCTGCGTACTCATCCCCTCAGCCTTCTGTCACCCACCGTACC
ATCACCTACAACGCCTATCAGACTG----------CACACACCTTCTCTCGCTCGCTCACTCACACACTCACTCTGGCTC
ACGCCGTGTATATATACGCCCTCGCACTTCAATCCCAAAACAGCAAAACTCACCGGTATCTAGCCAAGTTAGCTCGAGCT
CCATTGTCACAATACGAGCGTCTACACACCCACATTGCACCTCCAGGGCCAGGCCAACCTCGAACGCCATGGAAGCCCCT
CTGCACCAGCTGGCCCCCATGCAGCAAGCACTGCTCGCCCGTCCTCAGAACTGCAAGCACGACGCCGCGGCGACCATGGC
CGCGACGGACATGGCGTGCCTCCAGCAGCAGCAGC---AGCTGATGCAGCTGCAGCCGGCGGCGGCGAACCCGAACACGC
CCTCGGGCGCGGCACGGGAGCAGTGCCCGCGGTGCGCGTCTCACGACACCAAGTTCTGCTACTACAACAACTACAACACG
TCGCAGCCGCGCCACTTCTGCCGCGCCTGCCGCCGCTACTGGACGCTCGGGGGCTCCCTCCGCAACGTCCCCATCGGGGG
CTCCACCCGCAAGCGCCTGCGCCCGGCGCCGCAGCAGACGATGCGCCGCCCGCCCGTCCACTTCGGTGCGCCTCCGCCGC
CGCCGATGCCGGCGCAGTCGCACTCCCAGCAGGCTCCGCAGGGCGGCCTTCTCAGCTCGCTGTTCGCGTTCGGCGCGGCG
CCGCTGTTCGAGGGCCGCGTCGGGTTCGACCTCGGCCTCGGCCTGCCCGGGCTGAGCCAGGTGGGGCTCGGCGGCGGCGC
CGGGGAGTTCGGCCTGCACTCCCTCGGGCTCCGGGGCGGCCATGCAGGGACGTCGGCGCCGATGCTCTGGCCGACAGCGT
TCTTGGACAACGGCAATGTGGACACGTGGAAGGTGTCCGGCGGCGGGGCGGCTGCCATGTGGGCGCCGGAGTTCTCTCCC
GCGCCGACGGTAGCACAGGTCGGCGGCAATGGCATGTTTCATGGCGGGGCCCAGATAATGGGAC-AACTGTGAGAGTGGT
CAGTAGTTGTGTGCGTAGCGTACGTGATGGCTCATGCATGTGCCTGCTGGATTATGTGTGTGTAGGTCTTAATTTGTTGT
GCAAGTGCATGGCTCGTGTCGTGTCTTGTTTACGTAGTACGTAGTGGTACAAGGAGGGGCCTGTCTAGTTTACAGTTTTG
GTTCCACAGGGGTAGAATGGTCTCTCATGTGTCTTATAGCGTGCGTC--TCTACAGGTCTGATGGTGTTATTTGTTGGGT
ACTTGGGTTACATGCATGTTGATGTTATGATTG-----------------------------------------------
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-----------------------------------TATAATTTACATTATTATCTATAGATTGGGTTTGCTCTCGTTTTC
TTTTTTGAGAGAGAGTTTCAAAGTTTGGTGCATGAACGATCTTCAAAGAATTGTTCAGACCCAACC-GAAAAAAGAAATG
TCCAAACAATCGTAGCTTTTTTTAACATAATACAGACGCAAGAGCTCATATATATGTGCATACACTCATCCCTATGAACG
CATACCCTACTCCTATGAGCACCTTTGAGAGACTGAGTCGACATGTCATCTTGAGATTTTACAAAGTCATCTTAGACGCC
ACGTAATCGATGGGAACGCCTCCTTCCATTGAACGTGTATCACCAAAAATCCTGATATATATTCAAGGATAAATACAAGC
ATGAGGATTTGAATCCTGATGGACTGGAATAACACTGTCTGCCTAACCATCTAAGTACCCG-----------------TC
GTAATTGAATCAAAAAGTCTCATAACTTCGAATCTATCTCACTTTTTCATGAGCGGACAGTCTGTAACAGTATTGCATTA
CTTTGTGCAGATGTTGCTTCATAAAAAAATACTCCAACC-GTAAAACATCTTACATTTATGTACAAAGGAAGTATTACTT
GATGCAGATGCTGGAGGATCAACAAAATTCCTTTTCGTTCACAAAAAACCATTTTCTCATGAAGATATTATTTTCTTGCT
CGGTTATTGCACTACTTTCGAAAAGGGACCTCCTATTTATCGACTGGTGCGATGGAAAGAGCT----CATGCACCGCCCA
CACGCCCTTTCGGGCAACCCATTTGCGGGGCATCTCTTTCAAAAAATATATTTTCCGTTTCTTTTTT-TATTTTCTACTT
CCTTAAATCTAGTTCGGGATAT-AAAAAAGGCTCATAAAATTTTAGAAAAACCCAATTTTTTTCAATGTTCACGAATATT
AAATCACAAGTTTTTAAACAATGTTCCAAATTCTAAGAGATATTTACTGATTTGGTAAAAATATTTGTGGATTCAAAATT
AGTTAATCAAATTTAAGAAAATGTTTGTTAATTCAAAAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-----S----S----------S-S--------------
----S--S-SS---S---------------S-SS-SSSSSS-S-SSS-SSS-SS--------------------------
-------------------------------------------------------------------------S----SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--------------S-------------------
-------------------------------------------------------S------------------------
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------S--------------S-S---S----------------------------------SSSS--------------
------------------------------------------------------------------------------S-
------S------------------S-----------S------------------------------------------
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---------------S---S------------------S-S---------------------------------------
------S-------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
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-S--------------------------------------------S-----------------------S----S----
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------------------------------------------------------------------------S--S----
-----------------------------------------------------------------------------S--
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--------SSSSS----------------------------------------S-S------------------------
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----------------------------------------------SSS---------------S---------------
--------------------------------S-----------------------------------------------
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--------------------------------------------------------------------------S-----
----S-----------S-------------------------------------------------S-------------
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------------------S---------------S----------------------S---------S------------
-------------S--------------SSSSS--SSS-S----------------------------------------
----------S------------------------S-----------S---------S----------------------
--------SS----S----S-----------------S----S---------------SSSSSS----------------
------------S--------------S---------------------------S-----------S------------
-----S--------------S-S-----------------------------S---------S---------S-------
---------S----S---------S---S-------S-S----------------------S-S---------S------
---------------SS--------SS------------
>forward_119
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-------------------CCACAACATGTCGTGCTTGG-----------------------------------------
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>reverse_1487
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----------------------------------------------ACTTCTCAGCTCGCTGTTCG--------------
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>forward_866
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----------------------------------------------TCTCGCTCACTCACTCTGGT--------------
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>reverse_3003
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------------------------------------------GCCGGTGTGATGGAAAAGAG------------------
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