Multiple sequence alignment - TraesCS4B01G049600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G049600 chr4B 100.000 4899 0 0 1 4899 38007880 38002982 0.000000e+00 9047.0
1 TraesCS4B01G049600 chr4B 81.794 379 31 14 4554 4899 439779337 439779710 2.890000e-72 283.0
2 TraesCS4B01G049600 chr4D 93.307 3989 140 52 433 4327 25585377 25581422 0.000000e+00 5770.0
3 TraesCS4B01G049600 chr4D 88.101 437 25 10 1 418 25590184 25589756 1.230000e-135 494.0
4 TraesCS4B01G049600 chr4D 96.471 85 3 0 4411 4495 25581423 25581339 1.840000e-29 141.0
5 TraesCS4B01G049600 chr4A 96.799 2093 62 4 2386 4477 577470181 577472269 0.000000e+00 3489.0
6 TraesCS4B01G049600 chr4A 88.626 1899 124 36 529 2366 577468241 577470108 0.000000e+00 2226.0
7 TraesCS4B01G049600 chr4A 87.751 547 27 5 1 507 577441165 577441711 1.950000e-168 603.0
8 TraesCS4B01G049600 chr4A 100.000 37 0 0 2350 2386 577470122 577470158 8.800000e-08 69.4
9 TraesCS4B01G049600 chrUn 85.642 397 15 16 4544 4899 218586389 218586784 3.580000e-101 379.0
10 TraesCS4B01G049600 chrUn 84.539 401 17 22 4544 4899 371690890 371691290 6.030000e-94 355.0
11 TraesCS4B01G049600 chrUn 79.500 400 33 22 4543 4898 8792551 8792945 6.340000e-59 239.0
12 TraesCS4B01G049600 chr7B 85.642 397 16 20 4544 4899 736311868 736311472 3.580000e-101 379.0
13 TraesCS4B01G049600 chr7B 84.289 401 19 21 4543 4899 608284726 608284326 7.800000e-93 351.0
14 TraesCS4B01G049600 chr7B 82.915 398 25 21 4544 4899 690305258 690305654 7.910000e-83 318.0
15 TraesCS4B01G049600 chr7B 78.947 399 40 24 4543 4898 742233762 742233365 1.060000e-56 231.0
16 TraesCS4B01G049600 chr7A 85.390 397 16 16 4544 4899 209703774 209703379 1.670000e-99 374.0
17 TraesCS4B01G049600 chr7A 77.003 387 45 21 4544 4892 114320241 114320621 1.080000e-41 182.0
18 TraesCS4B01G049600 chr1A 84.925 398 18 19 4544 4899 583037319 583036922 1.000000e-96 364.0
19 TraesCS4B01G049600 chr1A 80.818 391 35 21 4544 4899 561687208 561686823 2.250000e-68 270.0
20 TraesCS4B01G049600 chr6B 84.406 404 21 21 4537 4899 345581653 345582055 4.660000e-95 359.0
21 TraesCS4B01G049600 chr6B 84.289 401 18 22 4544 4899 706306337 706305937 2.810000e-92 350.0
22 TraesCS4B01G049600 chr6B 84.000 400 20 19 4544 4899 345593421 345593820 1.310000e-90 344.0
23 TraesCS4B01G049600 chr6B 84.848 99 9 2 130 223 207105324 207105227 1.450000e-15 95.3
24 TraesCS4B01G049600 chr3A 84.539 401 18 20 4542 4899 713677141 713676742 1.680000e-94 357.0
25 TraesCS4B01G049600 chr3A 88.333 60 6 1 281 339 621829745 621829686 2.450000e-08 71.3
26 TraesCS4B01G049600 chr5A 84.733 393 18 18 4544 4895 662380064 662379673 6.030000e-94 355.0
27 TraesCS4B01G049600 chr5A 82.915 398 19 20 4543 4899 438249912 438249523 3.680000e-81 313.0
28 TraesCS4B01G049600 chr5A 88.043 92 10 1 130 221 313498712 313498802 1.860000e-19 108.0
29 TraesCS4B01G049600 chr5D 84.422 398 19 20 4544 4899 499511971 499511575 7.800000e-93 351.0
30 TraesCS4B01G049600 chr5D 82.793 401 22 21 4544 4898 30668142 30667743 1.020000e-81 315.0
31 TraesCS4B01G049600 chr1B 84.328 402 18 18 4543 4899 618705145 618704744 7.800000e-93 351.0
32 TraesCS4B01G049600 chr1B 82.500 400 27 18 4543 4899 683588680 683589079 1.320000e-80 311.0
33 TraesCS4B01G049600 chr7D 80.563 391 35 18 4544 4899 156767243 156767627 3.760000e-66 263.0
34 TraesCS4B01G049600 chr7D 85.859 99 8 4 130 223 512941341 512941438 3.120000e-17 100.0
35 TraesCS4B01G049600 chr2A 77.889 398 42 26 4544 4898 757614074 757613680 6.430000e-49 206.0
36 TraesCS4B01G049600 chr2A 87.037 162 10 9 4746 4898 715603899 715603740 6.520000e-39 172.0
37 TraesCS4B01G049600 chr2A 86.503 163 11 6 4745 4898 875698 875538 8.430000e-38 169.0
38 TraesCS4B01G049600 chr2A 80.795 151 21 6 130 273 149484588 149484737 1.440000e-20 111.0
39 TraesCS4B01G049600 chr3D 81.081 148 18 4 131 273 48526336 48526478 5.180000e-20 110.0
40 TraesCS4B01G049600 chr3D 79.104 134 20 4 130 255 474440140 474440273 8.740000e-13 86.1
41 TraesCS4B01G049600 chr6A 78.652 178 21 12 125 293 574528304 574528473 8.680000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G049600 chr4B 38002982 38007880 4898 True 9047.000000 9047 100.000000 1 4899 1 chr4B.!!$R1 4898
1 TraesCS4B01G049600 chr4D 25581339 25585377 4038 True 2955.500000 5770 94.889000 433 4495 2 chr4D.!!$R2 4062
2 TraesCS4B01G049600 chr4A 577468241 577472269 4028 False 1928.133333 3489 95.141667 529 4477 3 chr4A.!!$F2 3948
3 TraesCS4B01G049600 chr4A 577441165 577441711 546 False 603.000000 603 87.751000 1 507 1 chr4A.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
969 1053 0.178973 AAAAACCCTGAACCCCGAGG 60.179 55.000 0.0 0.0 40.04 4.63 F
1822 1940 0.447801 CGCTTACACATTGCCTGGAC 59.552 55.000 0.0 0.0 0.00 4.02 F
2771 2958 1.973515 ACAAGCCTCTGATCACTGTCA 59.026 47.619 0.0 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2503 2690 0.676782 ACACGGCCCTGCATAGAAAC 60.677 55.0 0.00 0.00 0.00 2.78 R
3013 3200 0.035725 CTGCCTGCCTTGTCATCTCA 60.036 55.0 0.00 0.00 0.00 3.27 R
4570 4776 0.033011 TTCCTCCCTTCTCCTCGGAG 60.033 60.0 6.63 6.63 42.48 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.682494 CCGGAGAAGGAACCCCGA 60.682 66.667 0.00 0.00 44.29 5.14
22 23 2.064581 CCGGAGAAGGAACCCCGAT 61.065 63.158 0.00 0.00 44.29 4.18
53 54 4.899239 GGGCCGCACCGAGATCTG 62.899 72.222 0.00 0.00 40.62 2.90
56 57 1.953138 GCCGCACCGAGATCTGATG 60.953 63.158 0.00 0.00 0.00 3.07
103 104 4.664677 AGGAGCCGTGTGTCGCAC 62.665 66.667 6.45 6.45 44.36 5.34
121 122 1.133792 CACCCCATCCAATCCCACTAC 60.134 57.143 0.00 0.00 0.00 2.73
281 282 1.401905 CCAGCGGGCTTTATCACTTTC 59.598 52.381 0.00 0.00 0.00 2.62
283 284 1.066430 AGCGGGCTTTATCACTTTCGA 60.066 47.619 0.00 0.00 0.00 3.71
297 309 4.525487 TCACTTTCGAGCCTAGGTTTTCTA 59.475 41.667 11.31 0.00 0.00 2.10
382 405 0.935196 GTGTCGTGTGTCCTTGGAAC 59.065 55.000 0.00 0.00 0.00 3.62
403 426 3.251004 ACGAAATTCCAGAGCAAGAACAC 59.749 43.478 0.00 0.00 0.00 3.32
464 505 5.996644 TGGGTTAATCGATGGAGTAATTGT 58.003 37.500 0.00 0.00 35.45 2.71
507 548 1.377366 TTCGCTTTGACCGGCACAAA 61.377 50.000 20.75 20.75 36.15 2.83
508 549 1.657181 CGCTTTGACCGGCACAAAC 60.657 57.895 18.99 15.25 34.30 2.93
509 550 1.435515 GCTTTGACCGGCACAAACA 59.564 52.632 18.99 5.17 34.30 2.83
521 562 1.199624 CACAAACAAGCCTTGCGAAC 58.800 50.000 3.88 0.00 0.00 3.95
539 580 3.618698 GAACGACAGAAGAAAGTTTGGC 58.381 45.455 0.00 0.00 0.00 4.52
548 589 0.519077 GAAAGTTTGGCCAGAGAGCG 59.481 55.000 5.11 0.00 0.00 5.03
598 648 1.760875 GGGGCCAGTCCTACGATCA 60.761 63.158 4.39 0.00 34.39 2.92
599 649 1.122019 GGGGCCAGTCCTACGATCAT 61.122 60.000 4.39 0.00 34.39 2.45
600 650 0.318762 GGGCCAGTCCTACGATCATC 59.681 60.000 4.39 0.00 34.39 2.92
601 651 0.318762 GGCCAGTCCTACGATCATCC 59.681 60.000 0.00 0.00 0.00 3.51
602 652 1.333177 GCCAGTCCTACGATCATCCT 58.667 55.000 0.00 0.00 0.00 3.24
603 653 2.515854 GCCAGTCCTACGATCATCCTA 58.484 52.381 0.00 0.00 0.00 2.94
604 654 2.229302 GCCAGTCCTACGATCATCCTAC 59.771 54.545 0.00 0.00 0.00 3.18
605 655 2.820787 CCAGTCCTACGATCATCCTACC 59.179 54.545 0.00 0.00 0.00 3.18
617 667 3.547513 CCTACCCCTGCCGCCTAC 61.548 72.222 0.00 0.00 0.00 3.18
643 693 2.480845 GTACAAGTCACAGTCACCCAC 58.519 52.381 0.00 0.00 0.00 4.61
656 706 1.066430 TCACCCACCGCAGATAAACTC 60.066 52.381 0.00 0.00 0.00 3.01
663 713 2.271800 CCGCAGATAAACTCTCCACAC 58.728 52.381 0.00 0.00 29.16 3.82
674 724 2.772191 TCCACACCACCCACAGCT 60.772 61.111 0.00 0.00 0.00 4.24
681 731 3.625897 CACCCACAGCTCGACCCA 61.626 66.667 0.00 0.00 0.00 4.51
689 739 4.767255 GCTCGACCCAGGCCACTG 62.767 72.222 5.01 0.00 44.51 3.66
895 979 1.383456 CCAGTCAGAGAGGAGGAGCG 61.383 65.000 0.00 0.00 0.00 5.03
969 1053 0.178973 AAAAACCCTGAACCCCGAGG 60.179 55.000 0.00 0.00 40.04 4.63
1425 1530 3.134127 GGTGAGTGCGCCCCAATC 61.134 66.667 4.18 0.00 38.80 2.67
1427 1532 2.046023 TGAGTGCGCCCCAATCTG 60.046 61.111 4.18 0.00 39.22 2.90
1483 1596 4.891727 CCATTCGAGGGCGGTCGG 62.892 72.222 7.88 0.00 40.49 4.79
1535 1648 1.404986 CCCGGTAGTTTCTTGATCGCA 60.405 52.381 0.00 0.00 0.00 5.10
1538 1651 2.599082 CGGTAGTTTCTTGATCGCAGTC 59.401 50.000 0.00 0.00 0.00 3.51
1573 1686 1.269448 GATGAGAGCAGAGGGACGATC 59.731 57.143 0.00 0.00 0.00 3.69
1593 1710 1.808945 CGAAGCTGCTCTTCCAAATGT 59.191 47.619 1.00 0.00 46.60 2.71
1652 1769 9.110502 GGTTTTCCGATTAGATAGACAGATTTT 57.889 33.333 0.00 0.00 0.00 1.82
1654 1771 9.884636 TTTTCCGATTAGATAGACAGATTTTCA 57.115 29.630 0.00 0.00 0.00 2.69
1697 1814 3.181826 TCATTTTTCGCGTTACTGCAG 57.818 42.857 13.48 13.48 34.15 4.41
1737 1854 1.133869 CGACCCAAATTCGGCGAAC 59.866 57.895 26.22 9.28 32.66 3.95
1761 1878 6.082338 CGGATCATAACAATAGCTGCATTTC 58.918 40.000 1.02 0.00 0.00 2.17
1779 1896 1.442769 TCGCTTCCTGTTCTTGCATC 58.557 50.000 0.00 0.00 0.00 3.91
1784 1901 2.189594 TCCTGTTCTTGCATCCACAG 57.810 50.000 11.10 11.10 37.07 3.66
1785 1902 1.421268 TCCTGTTCTTGCATCCACAGT 59.579 47.619 15.00 0.00 35.79 3.55
1822 1940 0.447801 CGCTTACACATTGCCTGGAC 59.552 55.000 0.00 0.00 0.00 4.02
1925 2043 2.558359 CCTCTAGCCCACCAAAGTTTTG 59.442 50.000 0.00 0.00 37.90 2.44
2064 2184 3.070018 GAGCTACCATTTCATCATCCCG 58.930 50.000 0.00 0.00 0.00 5.14
2306 2433 3.664107 TCTTTCCTGTTCAGACATTCCG 58.336 45.455 1.00 0.00 34.72 4.30
2308 2435 3.485463 TTCCTGTTCAGACATTCCGTT 57.515 42.857 1.00 0.00 34.72 4.44
2444 2631 6.451393 TGAAAACCCTTTGCATGTATACAAC 58.549 36.000 10.14 6.00 0.00 3.32
2480 2667 3.609853 TGGAGATCGCTGCTTTATTGTT 58.390 40.909 0.00 0.00 33.04 2.83
2620 2807 2.423446 CGCTGGGGATACTGCCTC 59.577 66.667 0.00 0.00 0.00 4.70
2650 2837 4.469227 AGATGCTTCAACATGTCTACCTCT 59.531 41.667 0.00 0.00 0.00 3.69
2771 2958 1.973515 ACAAGCCTCTGATCACTGTCA 59.026 47.619 0.00 0.00 0.00 3.58
3076 3263 0.395311 TCGGCGATACTGGTCTCCTT 60.395 55.000 4.99 0.00 0.00 3.36
3208 3395 1.741706 CCAGTGCAGATGGATGTTGAC 59.258 52.381 11.75 0.00 40.51 3.18
3269 3456 1.736586 GATGTCGAGCGGGATCTGT 59.263 57.895 0.00 0.00 0.00 3.41
3274 3461 2.581354 GAGCGGGATCTGTGTGCT 59.419 61.111 0.00 0.00 38.89 4.40
3409 3596 3.414700 GTTGAGTGGCGACCGCAG 61.415 66.667 16.47 0.00 44.11 5.18
3460 3647 2.722201 GCCGTCAGGGGAGATCGTT 61.722 63.158 0.00 0.00 38.20 3.85
3557 3744 0.178921 TGAGGAGTTCCAGGCTGAGT 60.179 55.000 17.94 0.00 38.89 3.41
3616 3803 1.676384 GCTTGGTGGAGCAGAGTCT 59.324 57.895 0.00 0.00 42.25 3.24
3868 4055 4.241555 CTAGCAGCCGGCCCGATT 62.242 66.667 26.15 9.35 46.50 3.34
3900 4087 1.067071 ACTAACGCTAGCCAAGTGACC 60.067 52.381 9.66 0.00 39.15 4.02
3928 4115 2.034687 TTTCAGCTGCTCCTGGGC 59.965 61.111 9.47 0.00 33.64 5.36
3968 4155 2.719426 AGTCTGACGAGGTAAAACCG 57.281 50.000 1.52 0.00 44.90 4.44
3973 4160 0.514255 GACGAGGTAAAACCGGTTGC 59.486 55.000 23.08 14.03 44.90 4.17
4044 4242 4.256920 ACTTCAACTCAGATGTGGTATGC 58.743 43.478 0.00 0.00 0.00 3.14
4068 4266 6.036191 GCCAGAAGTTAATGTGTAGAAGTAGC 59.964 42.308 0.00 0.00 0.00 3.58
4136 4334 1.496060 TCCTATCCATGTCGGTTGCT 58.504 50.000 0.00 0.00 35.57 3.91
4137 4335 2.673258 TCCTATCCATGTCGGTTGCTA 58.327 47.619 0.00 0.00 35.57 3.49
4138 4336 3.239449 TCCTATCCATGTCGGTTGCTAT 58.761 45.455 0.00 0.00 35.57 2.97
4139 4337 3.258372 TCCTATCCATGTCGGTTGCTATC 59.742 47.826 0.00 0.00 35.57 2.08
4140 4338 3.006859 CCTATCCATGTCGGTTGCTATCA 59.993 47.826 0.00 0.00 35.57 2.15
4170 4368 5.782047 TGGAAATTTTGTTAGTGCCTGATG 58.218 37.500 0.00 0.00 0.00 3.07
4327 4532 2.842208 TGTTTTGTTGACGCTTCCAG 57.158 45.000 0.00 0.00 0.00 3.86
4329 4534 1.098869 TTTTGTTGACGCTTCCAGCA 58.901 45.000 0.00 0.00 42.58 4.41
4367 4573 3.188254 TGTTGGCTTCATCATGTGTAACG 59.812 43.478 0.00 0.00 42.39 3.18
4377 4583 6.626302 TCATCATGTGTAACGATCTGTTGTA 58.374 36.000 11.54 0.92 42.39 2.41
4434 4640 2.154462 CTCGCAACTTTCTCCCATGTT 58.846 47.619 0.00 0.00 0.00 2.71
4455 4661 5.125900 TGTTGATGAATGGATGTTGCCTAAG 59.874 40.000 0.00 0.00 0.00 2.18
4488 4694 2.874701 CGGGAATCTGAACATCCATGAC 59.125 50.000 0.00 0.00 34.82 3.06
4551 4757 7.463961 TTTTTAAGTTGGTACCTGTTTGACA 57.536 32.000 14.36 0.00 0.00 3.58
4552 4758 6.439675 TTTAAGTTGGTACCTGTTTGACAC 57.560 37.500 14.36 0.00 0.00 3.67
4553 4759 2.557317 AGTTGGTACCTGTTTGACACG 58.443 47.619 14.36 0.00 0.00 4.49
4554 4760 2.168936 AGTTGGTACCTGTTTGACACGA 59.831 45.455 14.36 0.00 0.00 4.35
4555 4761 2.519377 TGGTACCTGTTTGACACGAG 57.481 50.000 14.36 0.00 0.00 4.18
4556 4762 2.033372 TGGTACCTGTTTGACACGAGA 58.967 47.619 14.36 0.00 0.00 4.04
4557 4763 2.431419 TGGTACCTGTTTGACACGAGAA 59.569 45.455 14.36 0.00 0.00 2.87
4558 4764 3.118702 TGGTACCTGTTTGACACGAGAAA 60.119 43.478 14.36 0.00 0.00 2.52
4559 4765 3.872771 GGTACCTGTTTGACACGAGAAAA 59.127 43.478 4.06 0.00 0.00 2.29
4560 4766 4.333372 GGTACCTGTTTGACACGAGAAAAA 59.667 41.667 4.06 0.00 0.00 1.94
4561 4767 4.351131 ACCTGTTTGACACGAGAAAAAC 57.649 40.909 0.00 0.00 33.98 2.43
4562 4768 3.754323 ACCTGTTTGACACGAGAAAAACA 59.246 39.130 13.54 13.54 39.51 2.83
4563 4769 4.398044 ACCTGTTTGACACGAGAAAAACAT 59.602 37.500 14.20 3.44 40.60 2.71
4564 4770 4.970003 CCTGTTTGACACGAGAAAAACATC 59.030 41.667 14.20 0.00 40.60 3.06
4565 4771 5.220854 CCTGTTTGACACGAGAAAAACATCT 60.221 40.000 14.20 0.00 40.60 2.90
4566 4772 6.018262 CCTGTTTGACACGAGAAAAACATCTA 60.018 38.462 14.20 0.00 40.60 1.98
4567 4773 7.310072 TGTTTGACACGAGAAAAACATCTAA 57.690 32.000 11.41 0.00 37.54 2.10
4568 4774 7.753659 TGTTTGACACGAGAAAAACATCTAAA 58.246 30.769 11.41 0.00 37.54 1.85
4569 4775 8.237949 TGTTTGACACGAGAAAAACATCTAAAA 58.762 29.630 11.41 0.00 37.54 1.52
4570 4776 8.521059 GTTTGACACGAGAAAAACATCTAAAAC 58.479 33.333 0.00 0.00 33.67 2.43
4571 4777 7.548196 TGACACGAGAAAAACATCTAAAACT 57.452 32.000 0.00 0.00 0.00 2.66
4572 4778 7.627340 TGACACGAGAAAAACATCTAAAACTC 58.373 34.615 0.00 0.00 0.00 3.01
4573 4779 6.956047 ACACGAGAAAAACATCTAAAACTCC 58.044 36.000 0.00 0.00 0.00 3.85
4574 4780 6.071463 CACGAGAAAAACATCTAAAACTCCG 58.929 40.000 0.00 0.00 0.00 4.63
4575 4781 5.987347 ACGAGAAAAACATCTAAAACTCCGA 59.013 36.000 0.00 0.00 0.00 4.55
4576 4782 6.145696 ACGAGAAAAACATCTAAAACTCCGAG 59.854 38.462 0.00 0.00 0.00 4.63
4577 4783 6.401153 CGAGAAAAACATCTAAAACTCCGAGG 60.401 42.308 0.00 0.00 0.00 4.63
4578 4784 6.531021 AGAAAAACATCTAAAACTCCGAGGA 58.469 36.000 0.00 0.00 0.00 3.71
4579 4785 6.651225 AGAAAAACATCTAAAACTCCGAGGAG 59.349 38.462 17.01 17.01 46.91 3.69
4580 4786 5.740290 AAACATCTAAAACTCCGAGGAGA 57.260 39.130 24.53 2.68 44.53 3.71
4581 4787 5.740290 AACATCTAAAACTCCGAGGAGAA 57.260 39.130 24.53 7.02 44.53 2.87
4582 4788 5.331876 ACATCTAAAACTCCGAGGAGAAG 57.668 43.478 24.53 14.93 44.53 2.85
4583 4789 4.160626 ACATCTAAAACTCCGAGGAGAAGG 59.839 45.833 24.53 10.05 44.53 3.46
4584 4790 3.097614 TCTAAAACTCCGAGGAGAAGGG 58.902 50.000 24.53 10.65 44.53 3.95
4585 4791 2.025636 AAAACTCCGAGGAGAAGGGA 57.974 50.000 24.53 0.00 44.53 4.20
4587 4793 4.268720 CTCCGAGGAGAAGGGAGG 57.731 66.667 13.69 0.00 44.53 4.30
4588 4794 1.615814 CTCCGAGGAGAAGGGAGGA 59.384 63.158 13.69 0.00 44.53 3.71
4589 4795 0.033011 CTCCGAGGAGAAGGGAGGAA 60.033 60.000 13.69 0.00 44.53 3.36
4590 4796 0.033011 TCCGAGGAGAAGGGAGGAAG 60.033 60.000 0.00 0.00 0.00 3.46
4591 4797 1.045911 CCGAGGAGAAGGGAGGAAGG 61.046 65.000 0.00 0.00 0.00 3.46
4592 4798 1.045911 CGAGGAGAAGGGAGGAAGGG 61.046 65.000 0.00 0.00 0.00 3.95
4593 4799 0.340208 GAGGAGAAGGGAGGAAGGGA 59.660 60.000 0.00 0.00 0.00 4.20
4594 4800 0.341609 AGGAGAAGGGAGGAAGGGAG 59.658 60.000 0.00 0.00 0.00 4.30
4595 4801 0.043485 GGAGAAGGGAGGAAGGGAGT 59.957 60.000 0.00 0.00 0.00 3.85
4596 4802 1.199615 GAGAAGGGAGGAAGGGAGTG 58.800 60.000 0.00 0.00 0.00 3.51
4597 4803 0.494095 AGAAGGGAGGAAGGGAGTGT 59.506 55.000 0.00 0.00 0.00 3.55
4598 4804 0.615850 GAAGGGAGGAAGGGAGTGTG 59.384 60.000 0.00 0.00 0.00 3.82
4599 4805 0.104409 AAGGGAGGAAGGGAGTGTGT 60.104 55.000 0.00 0.00 0.00 3.72
4600 4806 0.104409 AGGGAGGAAGGGAGTGTGTT 60.104 55.000 0.00 0.00 0.00 3.32
4601 4807 0.771755 GGGAGGAAGGGAGTGTGTTT 59.228 55.000 0.00 0.00 0.00 2.83
4602 4808 1.271434 GGGAGGAAGGGAGTGTGTTTC 60.271 57.143 0.00 0.00 0.00 2.78
4603 4809 1.700186 GGAGGAAGGGAGTGTGTTTCT 59.300 52.381 0.00 0.00 0.00 2.52
4604 4810 2.289756 GGAGGAAGGGAGTGTGTTTCTC 60.290 54.545 0.00 0.00 0.00 2.87
4605 4811 2.635427 GAGGAAGGGAGTGTGTTTCTCT 59.365 50.000 0.00 0.00 33.06 3.10
4606 4812 2.635427 AGGAAGGGAGTGTGTTTCTCTC 59.365 50.000 0.00 0.00 36.35 3.20
4607 4813 2.368875 GGAAGGGAGTGTGTTTCTCTCA 59.631 50.000 0.00 0.00 38.12 3.27
4608 4814 3.556004 GGAAGGGAGTGTGTTTCTCTCAG 60.556 52.174 0.00 0.00 38.12 3.35
4609 4815 2.964209 AGGGAGTGTGTTTCTCTCAGA 58.036 47.619 0.00 0.00 38.12 3.27
4610 4816 2.630580 AGGGAGTGTGTTTCTCTCAGAC 59.369 50.000 0.00 0.00 38.12 3.51
4611 4817 2.608261 GGGAGTGTGTTTCTCTCAGACG 60.608 54.545 0.00 0.00 38.12 4.18
4612 4818 2.055100 GAGTGTGTTTCTCTCAGACGC 58.945 52.381 0.00 0.00 36.86 5.19
4613 4819 1.140816 GTGTGTTTCTCTCAGACGCC 58.859 55.000 0.00 0.00 0.00 5.68
4614 4820 0.318699 TGTGTTTCTCTCAGACGCCG 60.319 55.000 0.00 0.00 0.00 6.46
4615 4821 1.009389 GTGTTTCTCTCAGACGCCGG 61.009 60.000 0.00 0.00 0.00 6.13
4616 4822 1.446272 GTTTCTCTCAGACGCCGGG 60.446 63.158 2.18 0.00 0.00 5.73
4617 4823 2.646175 TTTCTCTCAGACGCCGGGG 61.646 63.158 18.33 18.33 0.00 5.73
4618 4824 3.578968 TTCTCTCAGACGCCGGGGA 62.579 63.158 27.23 0.73 0.00 4.81
4619 4825 3.068691 CTCTCAGACGCCGGGGAA 61.069 66.667 27.23 6.50 0.00 3.97
4620 4826 3.068691 TCTCAGACGCCGGGGAAG 61.069 66.667 27.23 15.63 0.00 3.46
4621 4827 4.148825 CTCAGACGCCGGGGAAGG 62.149 72.222 27.23 13.14 0.00 3.46
4622 4828 4.689549 TCAGACGCCGGGGAAGGA 62.690 66.667 27.23 15.27 0.00 3.36
4623 4829 3.702048 CAGACGCCGGGGAAGGAA 61.702 66.667 27.23 0.00 0.00 3.36
4624 4830 2.926242 AGACGCCGGGGAAGGAAA 60.926 61.111 27.23 0.00 0.00 3.13
4625 4831 2.032987 GACGCCGGGGAAGGAAAA 59.967 61.111 27.23 0.00 0.00 2.29
4626 4832 2.281970 ACGCCGGGGAAGGAAAAC 60.282 61.111 27.23 0.00 0.00 2.43
4627 4833 2.033602 CGCCGGGGAAGGAAAACT 59.966 61.111 14.46 0.00 0.00 2.66
4628 4834 2.332654 CGCCGGGGAAGGAAAACTG 61.333 63.158 14.46 0.00 0.00 3.16
4629 4835 1.074248 GCCGGGGAAGGAAAACTGA 59.926 57.895 2.18 0.00 0.00 3.41
4630 4836 0.960861 GCCGGGGAAGGAAAACTGAG 60.961 60.000 2.18 0.00 0.00 3.35
4631 4837 0.400594 CCGGGGAAGGAAAACTGAGT 59.599 55.000 0.00 0.00 0.00 3.41
4632 4838 1.626825 CCGGGGAAGGAAAACTGAGTA 59.373 52.381 0.00 0.00 0.00 2.59
4633 4839 2.238898 CCGGGGAAGGAAAACTGAGTAT 59.761 50.000 0.00 0.00 0.00 2.12
4634 4840 3.270877 CGGGGAAGGAAAACTGAGTATG 58.729 50.000 0.00 0.00 0.00 2.39
4635 4841 3.017442 GGGGAAGGAAAACTGAGTATGC 58.983 50.000 0.00 0.00 0.00 3.14
4636 4842 2.678336 GGGAAGGAAAACTGAGTATGCG 59.322 50.000 0.00 0.00 0.00 4.73
4637 4843 2.678336 GGAAGGAAAACTGAGTATGCGG 59.322 50.000 0.00 0.00 0.00 5.69
4638 4844 2.403252 AGGAAAACTGAGTATGCGGG 57.597 50.000 0.00 0.00 0.00 6.13
4639 4845 0.733150 GGAAAACTGAGTATGCGGGC 59.267 55.000 0.00 0.00 0.00 6.13
4640 4846 0.373716 GAAAACTGAGTATGCGGGCG 59.626 55.000 0.00 0.00 0.00 6.13
4641 4847 0.321298 AAAACTGAGTATGCGGGCGT 60.321 50.000 0.00 0.00 0.00 5.68
4642 4848 1.019278 AAACTGAGTATGCGGGCGTG 61.019 55.000 0.00 0.00 0.00 5.34
4643 4849 3.264897 CTGAGTATGCGGGCGTGC 61.265 66.667 0.00 0.00 0.00 5.34
4644 4850 4.830765 TGAGTATGCGGGCGTGCC 62.831 66.667 1.16 1.16 0.00 5.01
4645 4851 4.830765 GAGTATGCGGGCGTGCCA 62.831 66.667 13.76 0.00 37.98 4.92
4646 4852 4.838152 AGTATGCGGGCGTGCCAG 62.838 66.667 13.76 10.16 37.98 4.85
4653 4859 4.323477 GGGCGTGCCAGTGTACCA 62.323 66.667 13.76 0.00 37.98 3.25
4654 4860 2.046314 GGCGTGCCAGTGTACCAT 60.046 61.111 5.89 0.00 35.81 3.55
4655 4861 1.219664 GGCGTGCCAGTGTACCATA 59.780 57.895 5.89 0.00 35.81 2.74
4656 4862 0.810031 GGCGTGCCAGTGTACCATAG 60.810 60.000 5.89 0.00 35.81 2.23
4657 4863 1.429148 GCGTGCCAGTGTACCATAGC 61.429 60.000 0.00 0.00 0.00 2.97
4658 4864 0.108377 CGTGCCAGTGTACCATAGCA 60.108 55.000 0.00 0.00 0.00 3.49
4659 4865 1.369625 GTGCCAGTGTACCATAGCAC 58.630 55.000 10.99 10.99 43.14 4.40
4660 4866 0.980423 TGCCAGTGTACCATAGCACA 59.020 50.000 0.00 0.00 38.02 4.57
4661 4867 1.338674 TGCCAGTGTACCATAGCACAC 60.339 52.381 0.00 0.00 44.32 3.82
4662 4868 1.338674 GCCAGTGTACCATAGCACACA 60.339 52.381 7.52 0.00 45.99 3.72
4663 4869 2.874052 GCCAGTGTACCATAGCACACAA 60.874 50.000 7.52 0.00 45.99 3.33
4664 4870 3.407698 CCAGTGTACCATAGCACACAAA 58.592 45.455 7.52 0.00 45.99 2.83
4665 4871 3.436704 CCAGTGTACCATAGCACACAAAG 59.563 47.826 7.52 0.00 45.99 2.77
4666 4872 4.314961 CAGTGTACCATAGCACACAAAGA 58.685 43.478 7.52 0.00 45.99 2.52
4667 4873 4.754618 CAGTGTACCATAGCACACAAAGAA 59.245 41.667 7.52 0.00 45.99 2.52
4668 4874 5.238432 CAGTGTACCATAGCACACAAAGAAA 59.762 40.000 7.52 0.00 45.99 2.52
4669 4875 5.825679 AGTGTACCATAGCACACAAAGAAAA 59.174 36.000 7.52 0.00 45.99 2.29
4670 4876 6.320164 AGTGTACCATAGCACACAAAGAAAAA 59.680 34.615 7.52 0.00 45.99 1.94
4671 4877 7.014230 AGTGTACCATAGCACACAAAGAAAAAT 59.986 33.333 7.52 0.00 45.99 1.82
4672 4878 8.293867 GTGTACCATAGCACACAAAGAAAAATA 58.706 33.333 0.20 0.00 43.61 1.40
4673 4879 8.851145 TGTACCATAGCACACAAAGAAAAATAA 58.149 29.630 0.00 0.00 0.00 1.40
4674 4880 9.685828 GTACCATAGCACACAAAGAAAAATAAA 57.314 29.630 0.00 0.00 0.00 1.40
4715 4921 9.635404 TGGAGAAATAAAATTACATTATCCCGT 57.365 29.630 9.75 0.00 0.00 5.28
4734 4940 3.030652 AAAAAGGTGCGCTCCGTG 58.969 55.556 21.85 0.00 0.00 4.94
4735 4941 2.551912 AAAAAGGTGCGCTCCGTGG 61.552 57.895 21.85 0.00 0.00 4.94
4749 4955 3.053896 GTGGCCTACGGTTGTGGC 61.054 66.667 3.32 9.89 39.84 5.01
4750 4956 4.690719 TGGCCTACGGTTGTGGCG 62.691 66.667 3.32 0.00 40.81 5.69
4751 4957 4.382320 GGCCTACGGTTGTGGCGA 62.382 66.667 0.00 0.00 40.81 5.54
4752 4958 2.125269 GCCTACGGTTGTGGCGAT 60.125 61.111 4.28 0.00 34.28 4.58
4753 4959 1.743995 GCCTACGGTTGTGGCGATT 60.744 57.895 4.28 0.00 34.28 3.34
4754 4960 1.977594 GCCTACGGTTGTGGCGATTG 61.978 60.000 4.28 0.00 34.28 2.67
4755 4961 0.672401 CCTACGGTTGTGGCGATTGT 60.672 55.000 0.00 0.00 0.00 2.71
4756 4962 0.442310 CTACGGTTGTGGCGATTGTG 59.558 55.000 0.00 0.00 0.00 3.33
4757 4963 0.249953 TACGGTTGTGGCGATTGTGT 60.250 50.000 0.00 0.00 0.00 3.72
4758 4964 1.082169 CGGTTGTGGCGATTGTGTG 60.082 57.895 0.00 0.00 0.00 3.82
4759 4965 1.502990 CGGTTGTGGCGATTGTGTGA 61.503 55.000 0.00 0.00 0.00 3.58
4760 4966 0.881118 GGTTGTGGCGATTGTGTGAT 59.119 50.000 0.00 0.00 0.00 3.06
4761 4967 1.135689 GGTTGTGGCGATTGTGTGATC 60.136 52.381 0.00 0.00 0.00 2.92
4762 4968 1.806542 GTTGTGGCGATTGTGTGATCT 59.193 47.619 0.00 0.00 0.00 2.75
4763 4969 1.725641 TGTGGCGATTGTGTGATCTC 58.274 50.000 0.00 0.00 0.00 2.75
4764 4970 1.009829 GTGGCGATTGTGTGATCTCC 58.990 55.000 0.00 0.00 32.69 3.71
4765 4971 0.904649 TGGCGATTGTGTGATCTCCT 59.095 50.000 0.00 0.00 33.15 3.69
4766 4972 1.293924 GGCGATTGTGTGATCTCCTG 58.706 55.000 0.00 0.00 30.08 3.86
4767 4973 1.293924 GCGATTGTGTGATCTCCTGG 58.706 55.000 0.00 0.00 0.00 4.45
4768 4974 1.406069 GCGATTGTGTGATCTCCTGGT 60.406 52.381 0.00 0.00 0.00 4.00
4769 4975 2.936993 GCGATTGTGTGATCTCCTGGTT 60.937 50.000 0.00 0.00 0.00 3.67
4770 4976 2.932614 CGATTGTGTGATCTCCTGGTTC 59.067 50.000 0.00 0.00 0.00 3.62
4771 4977 2.859165 TTGTGTGATCTCCTGGTTCC 57.141 50.000 0.00 0.00 0.00 3.62
4772 4978 0.984230 TGTGTGATCTCCTGGTTCCC 59.016 55.000 0.00 0.00 0.00 3.97
4773 4979 0.108138 GTGTGATCTCCTGGTTCCCG 60.108 60.000 0.00 0.00 0.00 5.14
4774 4980 1.264749 TGTGATCTCCTGGTTCCCGG 61.265 60.000 0.00 0.00 0.00 5.73
4784 4990 4.024545 GTTCCCGGGGCCTCGAAA 62.025 66.667 31.01 18.16 0.00 3.46
4785 4991 3.712907 TTCCCGGGGCCTCGAAAG 61.713 66.667 31.01 15.50 0.00 2.62
4797 5003 3.594603 CCTCGAAAGGCTCTCAGTTAA 57.405 47.619 0.00 0.00 35.37 2.01
4798 5004 4.130286 CCTCGAAAGGCTCTCAGTTAAT 57.870 45.455 0.00 0.00 35.37 1.40
4799 5005 4.508662 CCTCGAAAGGCTCTCAGTTAATT 58.491 43.478 0.00 0.00 35.37 1.40
4800 5006 5.661458 CCTCGAAAGGCTCTCAGTTAATTA 58.339 41.667 0.00 0.00 35.37 1.40
4801 5007 5.520649 CCTCGAAAGGCTCTCAGTTAATTAC 59.479 44.000 0.00 0.00 35.37 1.89
4802 5008 6.282199 TCGAAAGGCTCTCAGTTAATTACT 57.718 37.500 0.00 0.00 37.68 2.24
4803 5009 6.331061 TCGAAAGGCTCTCAGTTAATTACTC 58.669 40.000 0.00 0.00 33.85 2.59
4804 5010 5.520649 CGAAAGGCTCTCAGTTAATTACTCC 59.479 44.000 0.00 0.00 33.85 3.85
4805 5011 4.657436 AGGCTCTCAGTTAATTACTCCG 57.343 45.455 0.00 0.00 33.85 4.63
4806 5012 3.385111 AGGCTCTCAGTTAATTACTCCGG 59.615 47.826 0.00 0.00 33.85 5.14
4807 5013 3.124560 GCTCTCAGTTAATTACTCCGGC 58.875 50.000 0.00 0.00 33.85 6.13
4808 5014 3.372954 CTCTCAGTTAATTACTCCGGCG 58.627 50.000 0.00 0.00 33.85 6.46
4809 5015 2.100252 TCTCAGTTAATTACTCCGGCGG 59.900 50.000 22.51 22.51 33.85 6.13
4810 5016 1.137479 TCAGTTAATTACTCCGGCGGG 59.863 52.381 27.98 19.08 33.85 6.13
4811 5017 1.134610 CAGTTAATTACTCCGGCGGGT 60.135 52.381 27.98 23.75 33.85 5.28
4812 5018 1.556451 AGTTAATTACTCCGGCGGGTT 59.444 47.619 27.98 15.76 28.23 4.11
4813 5019 1.667212 GTTAATTACTCCGGCGGGTTG 59.333 52.381 27.98 18.46 33.83 3.77
4814 5020 0.462403 TAATTACTCCGGCGGGTTGC 60.462 55.000 27.98 0.00 45.38 4.17
4815 5021 2.193087 AATTACTCCGGCGGGTTGCT 62.193 55.000 27.98 5.71 45.43 3.91
4816 5022 2.588856 ATTACTCCGGCGGGTTGCTC 62.589 60.000 27.98 0.00 45.43 4.26
4825 5031 3.857038 GGGTTGCTCCGCGGGATA 61.857 66.667 27.83 8.82 37.00 2.59
4826 5032 2.588034 GGTTGCTCCGCGGGATAC 60.588 66.667 27.83 17.52 0.00 2.24
4840 5046 2.447244 GGATACCTCCGATTGAGCTG 57.553 55.000 0.00 0.00 39.98 4.24
4841 5047 1.689273 GGATACCTCCGATTGAGCTGT 59.311 52.381 0.00 0.00 39.98 4.40
4842 5048 2.546795 GGATACCTCCGATTGAGCTGTG 60.547 54.545 0.00 0.00 39.98 3.66
4843 5049 1.557099 TACCTCCGATTGAGCTGTGT 58.443 50.000 0.00 0.00 39.98 3.72
4844 5050 0.036952 ACCTCCGATTGAGCTGTGTG 60.037 55.000 0.00 0.00 39.98 3.82
4845 5051 0.742281 CCTCCGATTGAGCTGTGTGG 60.742 60.000 0.00 0.00 39.98 4.17
4846 5052 0.036952 CTCCGATTGAGCTGTGTGGT 60.037 55.000 0.00 0.00 33.47 4.16
4847 5053 0.037326 TCCGATTGAGCTGTGTGGTC 60.037 55.000 0.00 0.00 43.03 4.02
4848 5054 1.354337 CCGATTGAGCTGTGTGGTCG 61.354 60.000 0.00 0.00 45.46 4.79
4849 5055 0.667487 CGATTGAGCTGTGTGGTCGT 60.667 55.000 0.00 0.00 45.46 4.34
4850 5056 1.071605 GATTGAGCTGTGTGGTCGTC 58.928 55.000 0.00 0.00 45.46 4.20
4851 5057 0.681733 ATTGAGCTGTGTGGTCGTCT 59.318 50.000 0.00 0.00 45.46 4.18
4852 5058 0.464036 TTGAGCTGTGTGGTCGTCTT 59.536 50.000 0.00 0.00 45.46 3.01
4853 5059 0.032130 TGAGCTGTGTGGTCGTCTTC 59.968 55.000 0.00 0.00 45.46 2.87
4854 5060 1.004277 GAGCTGTGTGGTCGTCTTCG 61.004 60.000 0.00 0.00 33.25 3.79
4855 5061 2.658707 GCTGTGTGGTCGTCTTCGC 61.659 63.158 0.00 0.00 36.96 4.70
4856 5062 1.007271 CTGTGTGGTCGTCTTCGCT 60.007 57.895 0.00 0.00 36.96 4.93
4857 5063 0.597637 CTGTGTGGTCGTCTTCGCTT 60.598 55.000 0.00 0.00 36.96 4.68
4858 5064 0.596600 TGTGTGGTCGTCTTCGCTTC 60.597 55.000 0.00 0.00 36.96 3.86
4859 5065 1.371267 TGTGGTCGTCTTCGCTTCG 60.371 57.895 0.00 0.00 36.96 3.79
4860 5066 2.430244 TGGTCGTCTTCGCTTCGC 60.430 61.111 0.00 0.00 36.96 4.70
4871 5077 3.567797 GCTTCGCGGTCTCCATGC 61.568 66.667 6.13 0.00 0.00 4.06
4872 5078 2.125552 CTTCGCGGTCTCCATGCA 60.126 61.111 6.13 0.00 0.00 3.96
4873 5079 1.522355 CTTCGCGGTCTCCATGCAT 60.522 57.895 6.13 0.00 0.00 3.96
4874 5080 1.769098 CTTCGCGGTCTCCATGCATG 61.769 60.000 20.19 20.19 0.00 4.06
4875 5081 2.202919 CGCGGTCTCCATGCATGA 60.203 61.111 28.31 12.81 0.00 3.07
4876 5082 1.596203 CGCGGTCTCCATGCATGAT 60.596 57.895 28.31 0.00 0.00 2.45
4877 5083 1.838568 CGCGGTCTCCATGCATGATG 61.839 60.000 28.31 18.55 0.00 3.07
4878 5084 0.533531 GCGGTCTCCATGCATGATGA 60.534 55.000 28.31 20.42 33.31 2.92
4879 5085 1.881072 GCGGTCTCCATGCATGATGAT 60.881 52.381 28.31 0.00 33.31 2.45
4880 5086 1.804748 CGGTCTCCATGCATGATGATG 59.195 52.381 28.31 15.88 33.31 3.07
4881 5087 2.160205 GGTCTCCATGCATGATGATGG 58.840 52.381 28.31 12.04 40.61 3.51
4882 5088 2.488528 GGTCTCCATGCATGATGATGGT 60.489 50.000 28.31 0.00 40.21 3.55
4883 5089 2.552743 GTCTCCATGCATGATGATGGTG 59.447 50.000 28.31 12.47 40.21 4.17
4884 5090 2.440253 TCTCCATGCATGATGATGGTGA 59.560 45.455 28.31 14.62 40.21 4.02
4885 5091 3.073946 TCTCCATGCATGATGATGGTGAT 59.926 43.478 28.31 0.00 40.21 3.06
4886 5092 3.153919 TCCATGCATGATGATGGTGATG 58.846 45.455 28.31 6.55 40.21 3.07
4887 5093 2.890945 CCATGCATGATGATGGTGATGT 59.109 45.455 28.31 0.00 35.33 3.06
4888 5094 3.305335 CCATGCATGATGATGGTGATGTG 60.305 47.826 28.31 1.81 35.33 3.21
4889 5095 3.007473 TGCATGATGATGGTGATGTGT 57.993 42.857 0.00 0.00 0.00 3.72
4890 5096 2.685897 TGCATGATGATGGTGATGTGTG 59.314 45.455 0.00 0.00 0.00 3.82
4891 5097 2.686405 GCATGATGATGGTGATGTGTGT 59.314 45.455 0.00 0.00 0.00 3.72
4892 5098 3.129813 GCATGATGATGGTGATGTGTGTT 59.870 43.478 0.00 0.00 0.00 3.32
4893 5099 4.381185 GCATGATGATGGTGATGTGTGTTT 60.381 41.667 0.00 0.00 0.00 2.83
4894 5100 4.769859 TGATGATGGTGATGTGTGTTTG 57.230 40.909 0.00 0.00 0.00 2.93
4895 5101 3.506844 TGATGATGGTGATGTGTGTTTGG 59.493 43.478 0.00 0.00 0.00 3.28
4896 5102 2.237643 TGATGGTGATGTGTGTTTGGG 58.762 47.619 0.00 0.00 0.00 4.12
4897 5103 0.968405 ATGGTGATGTGTGTTTGGGC 59.032 50.000 0.00 0.00 0.00 5.36
4898 5104 1.285641 GGTGATGTGTGTTTGGGCG 59.714 57.895 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.071385 CGGCCCTGCTAGAATTCAGAT 59.929 52.381 8.44 0.00 32.26 2.90
22 23 0.465705 CGGCCCTGCTAGAATTCAGA 59.534 55.000 8.44 0.00 32.26 3.27
85 86 4.662961 TGCGACACACGGCTCCTG 62.663 66.667 0.00 0.00 42.83 3.86
103 104 0.478507 GGTAGTGGGATTGGATGGGG 59.521 60.000 0.00 0.00 0.00 4.96
121 122 0.988145 TGGCCAGGACTAATGAGGGG 60.988 60.000 0.00 0.00 0.00 4.79
202 203 4.821589 GCCCGAGTCAGGCCTTCG 62.822 72.222 16.81 16.81 45.16 3.79
225 226 5.860182 GGCCCTTTCAGTAAATCGTTAAAAC 59.140 40.000 0.00 0.00 0.00 2.43
297 309 2.967946 GCCTACCAAAGCCCGAGGT 61.968 63.158 0.00 0.00 39.41 3.85
327 350 2.830475 GAGGGGTATACCTCGCCAA 58.170 57.895 21.25 0.00 46.81 4.52
361 384 1.694844 TCCAAGGACACACGACACTA 58.305 50.000 0.00 0.00 0.00 2.74
382 405 3.665323 CGTGTTCTTGCTCTGGAATTTCG 60.665 47.826 0.00 0.00 0.00 3.46
403 426 2.268076 CCCAACCCAACCTTGCTCG 61.268 63.158 0.00 0.00 0.00 5.03
507 548 1.498865 CTGTCGTTCGCAAGGCTTGT 61.499 55.000 26.71 0.00 38.47 3.16
508 549 1.205064 CTGTCGTTCGCAAGGCTTG 59.795 57.895 22.75 22.75 38.47 4.01
509 550 0.531974 TTCTGTCGTTCGCAAGGCTT 60.532 50.000 0.00 0.00 38.47 4.35
521 562 1.946768 TGGCCAAACTTTCTTCTGTCG 59.053 47.619 0.61 0.00 0.00 4.35
598 648 3.096089 TAGGCGGCAGGGGTAGGAT 62.096 63.158 13.08 0.00 0.00 3.24
599 649 3.757941 TAGGCGGCAGGGGTAGGA 61.758 66.667 13.08 0.00 0.00 2.94
600 650 3.547513 GTAGGCGGCAGGGGTAGG 61.548 72.222 13.08 0.00 0.00 3.18
601 651 3.912907 CGTAGGCGGCAGGGGTAG 61.913 72.222 13.08 0.00 0.00 3.18
617 667 0.313043 ACTGTGACTTGTACCGTCCG 59.687 55.000 9.19 2.59 0.00 4.79
620 670 1.068127 GGTGACTGTGACTTGTACCGT 59.932 52.381 0.00 0.00 0.00 4.83
621 671 1.604693 GGGTGACTGTGACTTGTACCG 60.605 57.143 0.00 0.00 0.00 4.02
622 672 1.414919 TGGGTGACTGTGACTTGTACC 59.585 52.381 0.00 0.00 0.00 3.34
623 673 2.480845 GTGGGTGACTGTGACTTGTAC 58.519 52.381 0.00 0.00 0.00 2.90
624 674 1.414919 GGTGGGTGACTGTGACTTGTA 59.585 52.381 0.00 0.00 0.00 2.41
625 675 0.180406 GGTGGGTGACTGTGACTTGT 59.820 55.000 0.00 0.00 0.00 3.16
626 676 0.880278 CGGTGGGTGACTGTGACTTG 60.880 60.000 0.00 0.00 0.00 3.16
627 677 1.445942 CGGTGGGTGACTGTGACTT 59.554 57.895 0.00 0.00 0.00 3.01
656 706 2.281761 GCTGTGGGTGGTGTGGAG 60.282 66.667 0.00 0.00 0.00 3.86
663 713 4.394712 GGGTCGAGCTGTGGGTGG 62.395 72.222 15.18 0.00 0.00 4.61
674 724 1.701031 TTTTCAGTGGCCTGGGTCGA 61.701 55.000 3.32 0.00 39.31 4.20
704 767 3.013921 CTGTAAAAAGGCTTGCGGGATA 58.986 45.455 0.00 0.00 0.00 2.59
754 818 0.375106 CTCTCCGAGAAAAATGCGCC 59.625 55.000 4.18 0.00 0.00 6.53
756 820 1.061711 CTGCTCTCCGAGAAAAATGCG 59.938 52.381 0.00 0.00 0.00 4.73
760 824 1.202639 TGTGCTGCTCTCCGAGAAAAA 60.203 47.619 0.00 0.00 0.00 1.94
833 897 1.375013 GCCACGGGTAGCTTTCGAA 60.375 57.895 0.00 0.00 0.00 3.71
903 987 2.858839 CGTTCCGGTAATTTTGCCTTC 58.141 47.619 0.00 0.00 0.00 3.46
905 989 0.524414 GCGTTCCGGTAATTTTGCCT 59.476 50.000 0.00 0.00 0.00 4.75
906 990 0.457166 GGCGTTCCGGTAATTTTGCC 60.457 55.000 0.00 3.02 0.00 4.52
969 1053 4.173924 GCCTCTGCCTCTGCCTCC 62.174 72.222 0.00 0.00 36.33 4.30
971 1055 3.400928 CTGCCTCTGCCTCTGCCT 61.401 66.667 0.00 0.00 36.33 4.75
1086 1173 4.798682 GAGGGGGAGGAGCCGGAA 62.799 72.222 5.05 0.00 37.63 4.30
1090 1177 4.890306 GGAGGAGGGGGAGGAGCC 62.890 77.778 0.00 0.00 0.00 4.70
1422 1527 1.153745 GCACGCGAGGAGACAGATT 60.154 57.895 15.93 0.00 0.00 2.40
1423 1528 1.599606 AAGCACGCGAGGAGACAGAT 61.600 55.000 15.93 0.00 0.00 2.90
1425 1530 1.803519 GAAGCACGCGAGGAGACAG 60.804 63.158 15.93 0.00 0.00 3.51
1427 1532 2.876645 CGAAGCACGCGAGGAGAC 60.877 66.667 15.93 0.00 34.51 3.36
1500 1613 2.047560 GGGACCGACCGAAACCTG 60.048 66.667 0.00 0.00 40.11 4.00
1535 1648 2.202570 CGTTCGCCCGAATCGACT 60.203 61.111 3.36 0.00 36.45 4.18
1538 1651 2.279252 ATCCGTTCGCCCGAATCG 60.279 61.111 6.38 11.15 36.45 3.34
1543 1656 2.278857 CTCTCATCCGTTCGCCCG 60.279 66.667 0.00 0.00 0.00 6.13
1593 1710 5.775701 TCCCCAAATCACGAAGGAAAATAAA 59.224 36.000 0.00 0.00 0.00 1.40
1645 1762 7.596494 TCCAAGAAAGTAATGCTGAAAATCTG 58.404 34.615 0.00 0.00 0.00 2.90
1652 1769 7.288810 ACAAATTCCAAGAAAGTAATGCTGA 57.711 32.000 0.00 0.00 0.00 4.26
1654 1771 7.725251 TGAACAAATTCCAAGAAAGTAATGCT 58.275 30.769 0.00 0.00 33.49 3.79
1683 1800 2.740826 GGCCTGCAGTAACGCGAA 60.741 61.111 15.93 0.00 33.35 4.70
1684 1801 3.691342 AGGCCTGCAGTAACGCGA 61.691 61.111 15.93 0.00 33.35 5.87
1697 1814 1.589716 ATTTCGAGCTGTTGCAGGCC 61.590 55.000 0.00 0.00 42.74 5.19
1737 1854 5.618056 AATGCAGCTATTGTTATGATCCG 57.382 39.130 0.00 0.00 0.00 4.18
1761 1878 0.449388 GGATGCAAGAACAGGAAGCG 59.551 55.000 0.00 0.00 0.00 4.68
1779 1896 5.357032 GGGGTAAAACAATCTATGACTGTGG 59.643 44.000 0.00 0.00 0.00 4.17
1784 1901 4.196971 AGCGGGGTAAAACAATCTATGAC 58.803 43.478 0.00 0.00 0.00 3.06
1785 1902 4.497291 AGCGGGGTAAAACAATCTATGA 57.503 40.909 0.00 0.00 0.00 2.15
1822 1940 4.452733 GGAGCCCGTCAAGTCCGG 62.453 72.222 0.00 0.00 45.07 5.14
2094 2214 4.077184 CCAAGCAGCCCGTCGGTA 62.077 66.667 11.06 0.00 0.00 4.02
2276 2396 4.039245 TCTGAACAGGAAAGAGGTGTACTG 59.961 45.833 1.93 0.00 0.00 2.74
2277 2397 4.039366 GTCTGAACAGGAAAGAGGTGTACT 59.961 45.833 1.93 0.00 0.00 2.73
2280 2400 2.771943 TGTCTGAACAGGAAAGAGGTGT 59.228 45.455 1.93 0.00 0.00 4.16
2281 2401 3.475566 TGTCTGAACAGGAAAGAGGTG 57.524 47.619 1.93 0.00 0.00 4.00
2284 2411 3.681897 CGGAATGTCTGAACAGGAAAGAG 59.318 47.826 1.93 0.00 39.20 2.85
2308 2435 9.104965 GGTACTTATTAACACAAGTGCATATGA 57.895 33.333 6.97 0.00 38.61 2.15
2444 2631 5.501413 GCGATCTCCATTGTATGCATAATCG 60.501 44.000 20.76 20.76 0.00 3.34
2503 2690 0.676782 ACACGGCCCTGCATAGAAAC 60.677 55.000 0.00 0.00 0.00 2.78
2650 2837 0.966875 CCAAAGCAGTGGCATAGGCA 60.967 55.000 0.15 0.00 44.61 4.75
3013 3200 0.035725 CTGCCTGCCTTGTCATCTCA 60.036 55.000 0.00 0.00 0.00 3.27
3208 3395 0.388134 CAGGACGGGTGTTCTGTACG 60.388 60.000 0.00 0.00 45.27 3.67
3269 3456 1.836999 ATTGCCCGGTAGACAGCACA 61.837 55.000 0.00 0.00 34.37 4.57
3274 3461 1.298340 CACCATTGCCCGGTAGACA 59.702 57.895 0.00 0.00 34.02 3.41
3409 3596 2.034687 TCAGCAGCTTCCCAAGGC 59.965 61.111 0.00 0.00 0.00 4.35
3457 3644 0.321210 TATGGACTGGCACCACAACG 60.321 55.000 0.00 0.00 40.36 4.10
3460 3647 0.991146 ATGTATGGACTGGCACCACA 59.009 50.000 0.00 0.00 40.36 4.17
3557 3744 1.226575 CAGTAATGCCGTCGAGCGA 60.227 57.895 8.63 0.00 44.77 4.93
3748 3935 1.482621 ATACATCGCAAGCGTCGCAG 61.483 55.000 21.09 12.58 40.74 5.18
3868 4055 1.605058 GCGTTAGTGCCTCCTCCAGA 61.605 60.000 0.00 0.00 0.00 3.86
3900 4087 4.142643 GGAGCAGCTGAAAGAGAAAGAATG 60.143 45.833 20.43 0.00 34.07 2.67
3928 4115 2.708051 ACCATCAGTGAGCATTGTGAG 58.292 47.619 0.00 0.00 0.00 3.51
3973 4160 7.753580 ACTTTTTACACAAGAGAAAAGGTTTCG 59.246 33.333 10.88 0.00 41.20 3.46
4044 4242 7.097192 TGCTACTTCTACACATTAACTTCTGG 58.903 38.462 0.00 0.00 0.00 3.86
4068 4266 5.425862 ACTGATCCCCTCATATCATCATCTG 59.574 44.000 0.00 0.00 31.95 2.90
4136 4334 7.827236 ACTAACAAAATTTCCAGTCGGATGATA 59.173 33.333 0.00 0.00 42.41 2.15
4137 4335 5.982890 AACAAAATTTCCAGTCGGATGAT 57.017 34.783 0.00 0.00 42.41 2.45
4138 4336 6.001460 ACTAACAAAATTTCCAGTCGGATGA 58.999 36.000 0.00 0.00 42.41 2.92
4139 4337 6.086222 CACTAACAAAATTTCCAGTCGGATG 58.914 40.000 0.00 0.00 42.41 3.51
4140 4338 5.335661 GCACTAACAAAATTTCCAGTCGGAT 60.336 40.000 0.00 0.00 42.41 4.18
4170 4368 6.476380 GCTAGCTATATCATCTTCTGTGATGC 59.524 42.308 7.70 0.00 42.44 3.91
4367 4573 3.181493 CCTTGGCTGCAATACAACAGATC 60.181 47.826 0.50 0.00 35.90 2.75
4377 4583 3.230134 TGTAAAACTCCTTGGCTGCAAT 58.770 40.909 0.50 0.00 0.00 3.56
4434 4640 4.209538 CCTTAGGCAACATCCATTCATCA 58.790 43.478 0.00 0.00 41.41 3.07
4527 4733 7.314393 GTGTCAAACAGGTACCAACTTAAAAA 58.686 34.615 15.94 0.00 0.00 1.94
4528 4734 6.403418 CGTGTCAAACAGGTACCAACTTAAAA 60.403 38.462 15.94 0.00 0.00 1.52
4529 4735 5.064962 CGTGTCAAACAGGTACCAACTTAAA 59.935 40.000 15.94 0.00 0.00 1.52
4530 4736 4.571580 CGTGTCAAACAGGTACCAACTTAA 59.428 41.667 15.94 0.00 0.00 1.85
4531 4737 4.121317 CGTGTCAAACAGGTACCAACTTA 58.879 43.478 15.94 0.00 0.00 2.24
4532 4738 2.940410 CGTGTCAAACAGGTACCAACTT 59.060 45.455 15.94 0.27 0.00 2.66
4533 4739 2.168936 TCGTGTCAAACAGGTACCAACT 59.831 45.455 15.94 0.00 35.64 3.16
4534 4740 2.542595 CTCGTGTCAAACAGGTACCAAC 59.457 50.000 15.94 2.90 35.64 3.77
4535 4741 2.431419 TCTCGTGTCAAACAGGTACCAA 59.569 45.455 15.94 0.00 35.64 3.67
4536 4742 2.033372 TCTCGTGTCAAACAGGTACCA 58.967 47.619 15.94 0.00 35.64 3.25
4537 4743 2.806608 TCTCGTGTCAAACAGGTACC 57.193 50.000 2.73 2.73 35.64 3.34
4538 4744 5.163834 TGTTTTTCTCGTGTCAAACAGGTAC 60.164 40.000 10.72 0.00 34.87 3.34
4539 4745 4.936411 TGTTTTTCTCGTGTCAAACAGGTA 59.064 37.500 10.72 0.00 34.87 3.08
4540 4746 3.754323 TGTTTTTCTCGTGTCAAACAGGT 59.246 39.130 10.72 0.00 34.87 4.00
4541 4747 4.349663 TGTTTTTCTCGTGTCAAACAGG 57.650 40.909 10.72 0.00 34.87 4.00
4542 4748 5.810525 AGATGTTTTTCTCGTGTCAAACAG 58.189 37.500 16.33 0.00 41.24 3.16
4543 4749 5.811399 AGATGTTTTTCTCGTGTCAAACA 57.189 34.783 14.69 14.69 41.93 2.83
4544 4750 8.521059 GTTTTAGATGTTTTTCTCGTGTCAAAC 58.479 33.333 7.09 7.09 0.00 2.93
4545 4751 8.455682 AGTTTTAGATGTTTTTCTCGTGTCAAA 58.544 29.630 0.00 0.00 0.00 2.69
4546 4752 7.981142 AGTTTTAGATGTTTTTCTCGTGTCAA 58.019 30.769 0.00 0.00 0.00 3.18
4547 4753 7.254658 GGAGTTTTAGATGTTTTTCTCGTGTCA 60.255 37.037 0.00 0.00 0.00 3.58
4548 4754 7.070183 GGAGTTTTAGATGTTTTTCTCGTGTC 58.930 38.462 0.00 0.00 0.00 3.67
4549 4755 6.292703 CGGAGTTTTAGATGTTTTTCTCGTGT 60.293 38.462 0.00 0.00 0.00 4.49
4550 4756 6.071463 CGGAGTTTTAGATGTTTTTCTCGTG 58.929 40.000 0.00 0.00 0.00 4.35
4551 4757 5.987347 TCGGAGTTTTAGATGTTTTTCTCGT 59.013 36.000 0.00 0.00 0.00 4.18
4552 4758 6.401153 CCTCGGAGTTTTAGATGTTTTTCTCG 60.401 42.308 4.02 0.00 0.00 4.04
4553 4759 6.649557 TCCTCGGAGTTTTAGATGTTTTTCTC 59.350 38.462 4.02 0.00 0.00 2.87
4554 4760 6.531021 TCCTCGGAGTTTTAGATGTTTTTCT 58.469 36.000 4.02 0.00 0.00 2.52
4555 4761 6.649557 TCTCCTCGGAGTTTTAGATGTTTTTC 59.350 38.462 12.43 0.00 42.49 2.29
4556 4762 6.531021 TCTCCTCGGAGTTTTAGATGTTTTT 58.469 36.000 12.43 0.00 42.49 1.94
4557 4763 6.110411 TCTCCTCGGAGTTTTAGATGTTTT 57.890 37.500 12.43 0.00 42.49 2.43
4558 4764 5.740290 TCTCCTCGGAGTTTTAGATGTTT 57.260 39.130 12.43 0.00 42.49 2.83
4559 4765 5.337652 CCTTCTCCTCGGAGTTTTAGATGTT 60.338 44.000 12.43 0.00 42.49 2.71
4560 4766 4.160626 CCTTCTCCTCGGAGTTTTAGATGT 59.839 45.833 12.43 0.00 42.49 3.06
4561 4767 4.442192 CCCTTCTCCTCGGAGTTTTAGATG 60.442 50.000 12.43 4.22 42.49 2.90
4562 4768 3.707102 CCCTTCTCCTCGGAGTTTTAGAT 59.293 47.826 12.43 0.00 42.49 1.98
4563 4769 3.097614 CCCTTCTCCTCGGAGTTTTAGA 58.902 50.000 12.43 0.00 42.49 2.10
4564 4770 3.097614 TCCCTTCTCCTCGGAGTTTTAG 58.902 50.000 12.43 6.54 42.49 1.85
4565 4771 3.097614 CTCCCTTCTCCTCGGAGTTTTA 58.902 50.000 12.43 0.00 42.49 1.52
4566 4772 1.903183 CTCCCTTCTCCTCGGAGTTTT 59.097 52.381 12.43 0.00 42.49 2.43
4567 4773 1.562783 CTCCCTTCTCCTCGGAGTTT 58.437 55.000 12.43 0.00 42.49 2.66
4568 4774 0.324830 CCTCCCTTCTCCTCGGAGTT 60.325 60.000 12.43 0.00 41.45 3.01
4569 4775 1.215679 TCCTCCCTTCTCCTCGGAGT 61.216 60.000 12.43 0.00 41.45 3.85
4570 4776 0.033011 TTCCTCCCTTCTCCTCGGAG 60.033 60.000 6.63 6.63 42.48 4.63
4571 4777 0.033011 CTTCCTCCCTTCTCCTCGGA 60.033 60.000 0.00 0.00 0.00 4.55
4572 4778 1.045911 CCTTCCTCCCTTCTCCTCGG 61.046 65.000 0.00 0.00 0.00 4.63
4573 4779 1.045911 CCCTTCCTCCCTTCTCCTCG 61.046 65.000 0.00 0.00 0.00 4.63
4574 4780 0.340208 TCCCTTCCTCCCTTCTCCTC 59.660 60.000 0.00 0.00 0.00 3.71
4575 4781 0.341609 CTCCCTTCCTCCCTTCTCCT 59.658 60.000 0.00 0.00 0.00 3.69
4576 4782 0.043485 ACTCCCTTCCTCCCTTCTCC 59.957 60.000 0.00 0.00 0.00 3.71
4577 4783 1.199615 CACTCCCTTCCTCCCTTCTC 58.800 60.000 0.00 0.00 0.00 2.87
4578 4784 0.494095 ACACTCCCTTCCTCCCTTCT 59.506 55.000 0.00 0.00 0.00 2.85
4579 4785 0.615850 CACACTCCCTTCCTCCCTTC 59.384 60.000 0.00 0.00 0.00 3.46
4580 4786 0.104409 ACACACTCCCTTCCTCCCTT 60.104 55.000 0.00 0.00 0.00 3.95
4581 4787 0.104409 AACACACTCCCTTCCTCCCT 60.104 55.000 0.00 0.00 0.00 4.20
4582 4788 0.771755 AAACACACTCCCTTCCTCCC 59.228 55.000 0.00 0.00 0.00 4.30
4583 4789 1.700186 AGAAACACACTCCCTTCCTCC 59.300 52.381 0.00 0.00 0.00 4.30
4584 4790 2.635427 AGAGAAACACACTCCCTTCCTC 59.365 50.000 0.00 0.00 35.27 3.71
4585 4791 2.635427 GAGAGAAACACACTCCCTTCCT 59.365 50.000 0.00 0.00 35.27 3.36
4586 4792 2.368875 TGAGAGAAACACACTCCCTTCC 59.631 50.000 0.00 0.00 35.81 3.46
4587 4793 3.322254 TCTGAGAGAAACACACTCCCTTC 59.678 47.826 0.00 0.00 35.81 3.46
4588 4794 3.070302 GTCTGAGAGAAACACACTCCCTT 59.930 47.826 0.00 0.00 35.81 3.95
4589 4795 2.630580 GTCTGAGAGAAACACACTCCCT 59.369 50.000 0.00 0.00 35.81 4.20
4590 4796 2.608261 CGTCTGAGAGAAACACACTCCC 60.608 54.545 0.00 0.00 35.81 4.30
4591 4797 2.667137 CGTCTGAGAGAAACACACTCC 58.333 52.381 0.00 0.00 35.81 3.85
4592 4798 2.055100 GCGTCTGAGAGAAACACACTC 58.945 52.381 0.00 0.00 36.89 3.51
4593 4799 1.269831 GGCGTCTGAGAGAAACACACT 60.270 52.381 0.00 0.00 0.00 3.55
4594 4800 1.140816 GGCGTCTGAGAGAAACACAC 58.859 55.000 0.00 0.00 0.00 3.82
4595 4801 0.318699 CGGCGTCTGAGAGAAACACA 60.319 55.000 0.00 0.00 0.00 3.72
4596 4802 1.009389 CCGGCGTCTGAGAGAAACAC 61.009 60.000 6.01 0.00 0.00 3.32
4597 4803 1.289066 CCGGCGTCTGAGAGAAACA 59.711 57.895 6.01 0.00 0.00 2.83
4598 4804 1.446272 CCCGGCGTCTGAGAGAAAC 60.446 63.158 6.01 0.00 0.00 2.78
4599 4805 2.646175 CCCCGGCGTCTGAGAGAAA 61.646 63.158 6.01 0.00 0.00 2.52
4600 4806 3.068691 CCCCGGCGTCTGAGAGAA 61.069 66.667 6.01 0.00 0.00 2.87
4601 4807 3.578968 TTCCCCGGCGTCTGAGAGA 62.579 63.158 6.01 0.00 0.00 3.10
4602 4808 3.068691 TTCCCCGGCGTCTGAGAG 61.069 66.667 6.01 0.00 0.00 3.20
4603 4809 3.068691 CTTCCCCGGCGTCTGAGA 61.069 66.667 6.01 0.00 0.00 3.27
4604 4810 4.148825 CCTTCCCCGGCGTCTGAG 62.149 72.222 6.01 0.00 0.00 3.35
4605 4811 4.689549 TCCTTCCCCGGCGTCTGA 62.690 66.667 6.01 0.00 0.00 3.27
4606 4812 2.741486 TTTTCCTTCCCCGGCGTCTG 62.741 60.000 6.01 0.00 0.00 3.51
4607 4813 2.522367 TTTTCCTTCCCCGGCGTCT 61.522 57.895 6.01 0.00 0.00 4.18
4608 4814 2.032987 TTTTCCTTCCCCGGCGTC 59.967 61.111 6.01 0.00 0.00 5.19
4609 4815 2.281970 GTTTTCCTTCCCCGGCGT 60.282 61.111 6.01 0.00 0.00 5.68
4610 4816 2.033602 AGTTTTCCTTCCCCGGCG 59.966 61.111 0.00 0.00 0.00 6.46
4611 4817 0.960861 CTCAGTTTTCCTTCCCCGGC 60.961 60.000 0.00 0.00 0.00 6.13
4612 4818 0.400594 ACTCAGTTTTCCTTCCCCGG 59.599 55.000 0.00 0.00 0.00 5.73
4613 4819 3.270877 CATACTCAGTTTTCCTTCCCCG 58.729 50.000 0.00 0.00 0.00 5.73
4614 4820 3.017442 GCATACTCAGTTTTCCTTCCCC 58.983 50.000 0.00 0.00 0.00 4.81
4615 4821 2.678336 CGCATACTCAGTTTTCCTTCCC 59.322 50.000 0.00 0.00 0.00 3.97
4616 4822 2.678336 CCGCATACTCAGTTTTCCTTCC 59.322 50.000 0.00 0.00 0.00 3.46
4617 4823 2.678336 CCCGCATACTCAGTTTTCCTTC 59.322 50.000 0.00 0.00 0.00 3.46
4618 4824 2.711542 CCCGCATACTCAGTTTTCCTT 58.288 47.619 0.00 0.00 0.00 3.36
4619 4825 1.679032 GCCCGCATACTCAGTTTTCCT 60.679 52.381 0.00 0.00 0.00 3.36
4620 4826 0.733150 GCCCGCATACTCAGTTTTCC 59.267 55.000 0.00 0.00 0.00 3.13
4621 4827 0.373716 CGCCCGCATACTCAGTTTTC 59.626 55.000 0.00 0.00 0.00 2.29
4622 4828 0.321298 ACGCCCGCATACTCAGTTTT 60.321 50.000 0.00 0.00 0.00 2.43
4623 4829 1.019278 CACGCCCGCATACTCAGTTT 61.019 55.000 0.00 0.00 0.00 2.66
4624 4830 1.447838 CACGCCCGCATACTCAGTT 60.448 57.895 0.00 0.00 0.00 3.16
4625 4831 2.184322 CACGCCCGCATACTCAGT 59.816 61.111 0.00 0.00 0.00 3.41
4626 4832 3.264897 GCACGCCCGCATACTCAG 61.265 66.667 0.00 0.00 0.00 3.35
4627 4833 4.830765 GGCACGCCCGCATACTCA 62.831 66.667 0.00 0.00 0.00 3.41
4628 4834 4.830765 TGGCACGCCCGCATACTC 62.831 66.667 5.42 0.00 35.87 2.59
4629 4835 4.838152 CTGGCACGCCCGCATACT 62.838 66.667 5.42 0.00 35.87 2.12
4636 4842 4.323477 TGGTACACTGGCACGCCC 62.323 66.667 5.42 0.00 34.56 6.13
4648 4854 9.685828 TTTATTTTTCTTTGTGTGCTATGGTAC 57.314 29.630 0.00 0.00 0.00 3.34
4689 4895 9.635404 ACGGGATAATGTAATTTTATTTCTCCA 57.365 29.630 12.50 0.00 37.87 3.86
4717 4923 2.551912 CCACGGAGCGCACCTTTTT 61.552 57.895 21.78 0.40 0.00 1.94
4718 4924 2.978010 CCACGGAGCGCACCTTTT 60.978 61.111 21.78 3.01 0.00 2.27
4737 4943 0.442310 CACAATCGCCACAACCGTAG 59.558 55.000 0.00 0.00 0.00 3.51
4738 4944 0.249953 ACACAATCGCCACAACCGTA 60.250 50.000 0.00 0.00 0.00 4.02
4739 4945 1.525077 ACACAATCGCCACAACCGT 60.525 52.632 0.00 0.00 0.00 4.83
4740 4946 1.082169 CACACAATCGCCACAACCG 60.082 57.895 0.00 0.00 0.00 4.44
4741 4947 0.881118 ATCACACAATCGCCACAACC 59.119 50.000 0.00 0.00 0.00 3.77
4742 4948 1.806542 AGATCACACAATCGCCACAAC 59.193 47.619 0.00 0.00 0.00 3.32
4743 4949 2.076100 GAGATCACACAATCGCCACAA 58.924 47.619 0.00 0.00 0.00 3.33
4744 4950 1.675714 GGAGATCACACAATCGCCACA 60.676 52.381 0.00 0.00 43.04 4.17
4745 4951 1.009829 GGAGATCACACAATCGCCAC 58.990 55.000 0.00 0.00 43.04 5.01
4746 4952 0.904649 AGGAGATCACACAATCGCCA 59.095 50.000 8.94 0.00 45.17 5.69
4747 4953 1.293924 CAGGAGATCACACAATCGCC 58.706 55.000 0.00 0.00 43.65 5.54
4748 4954 1.293924 CCAGGAGATCACACAATCGC 58.706 55.000 0.00 0.00 0.00 4.58
4749 4955 2.680312 ACCAGGAGATCACACAATCG 57.320 50.000 0.00 0.00 0.00 3.34
4750 4956 3.274288 GGAACCAGGAGATCACACAATC 58.726 50.000 0.00 0.00 0.00 2.67
4751 4957 3.356529 GGAACCAGGAGATCACACAAT 57.643 47.619 0.00 0.00 0.00 2.71
4752 4958 2.859165 GGAACCAGGAGATCACACAA 57.141 50.000 0.00 0.00 0.00 3.33
4767 4973 3.971109 CTTTCGAGGCCCCGGGAAC 62.971 68.421 26.32 14.87 0.00 3.62
4768 4974 3.712907 CTTTCGAGGCCCCGGGAA 61.713 66.667 26.32 3.36 0.00 3.97
4776 4982 9.924896 AGTAATTAACTGAGAGCCTTTCGAGGC 62.925 44.444 9.38 9.38 45.75 4.70
4777 4983 3.594603 TTAACTGAGAGCCTTTCGAGG 57.405 47.619 0.00 0.00 0.00 4.63
4778 4984 6.334202 AGTAATTAACTGAGAGCCTTTCGAG 58.666 40.000 0.00 0.00 36.93 4.04
4779 4985 6.282199 AGTAATTAACTGAGAGCCTTTCGA 57.718 37.500 0.00 0.00 36.93 3.71
4780 4986 5.520649 GGAGTAATTAACTGAGAGCCTTTCG 59.479 44.000 0.00 0.00 39.07 3.46
4781 4987 5.520649 CGGAGTAATTAACTGAGAGCCTTTC 59.479 44.000 0.00 0.00 39.07 2.62
4782 4988 5.420409 CGGAGTAATTAACTGAGAGCCTTT 58.580 41.667 0.00 0.00 39.07 3.11
4783 4989 4.141914 CCGGAGTAATTAACTGAGAGCCTT 60.142 45.833 0.00 0.00 39.07 4.35
4784 4990 3.385111 CCGGAGTAATTAACTGAGAGCCT 59.615 47.826 0.00 0.00 39.07 4.58
4785 4991 3.718815 CCGGAGTAATTAACTGAGAGCC 58.281 50.000 0.00 0.00 39.07 4.70
4786 4992 3.124560 GCCGGAGTAATTAACTGAGAGC 58.875 50.000 5.05 0.00 39.07 4.09
4787 4993 3.372954 CGCCGGAGTAATTAACTGAGAG 58.627 50.000 5.05 0.00 39.07 3.20
4788 4994 2.100252 CCGCCGGAGTAATTAACTGAGA 59.900 50.000 5.05 0.00 39.07 3.27
4789 4995 2.470821 CCGCCGGAGTAATTAACTGAG 58.529 52.381 5.05 0.00 39.07 3.35
4790 4996 1.137479 CCCGCCGGAGTAATTAACTGA 59.863 52.381 5.05 0.00 39.07 3.41
4791 4997 1.134610 ACCCGCCGGAGTAATTAACTG 60.135 52.381 5.05 0.00 39.07 3.16
4792 4998 1.197812 ACCCGCCGGAGTAATTAACT 58.802 50.000 5.05 0.00 42.80 2.24
4793 4999 1.667212 CAACCCGCCGGAGTAATTAAC 59.333 52.381 5.05 0.00 0.00 2.01
4794 5000 2.013058 GCAACCCGCCGGAGTAATTAA 61.013 52.381 5.05 0.00 32.94 1.40
4795 5001 0.462403 GCAACCCGCCGGAGTAATTA 60.462 55.000 5.05 0.00 32.94 1.40
4796 5002 1.747745 GCAACCCGCCGGAGTAATT 60.748 57.895 5.05 0.00 32.94 1.40
4797 5003 2.124860 GCAACCCGCCGGAGTAAT 60.125 61.111 5.05 0.00 32.94 1.89
4798 5004 3.305177 GAGCAACCCGCCGGAGTAA 62.305 63.158 5.05 0.00 44.04 2.24
4799 5005 3.766691 GAGCAACCCGCCGGAGTA 61.767 66.667 5.05 0.00 44.04 2.59
4813 5019 3.992317 GGAGGTATCCCGCGGAGC 61.992 72.222 30.73 17.29 44.03 4.70
4814 5020 3.671411 CGGAGGTATCCCGCGGAG 61.671 72.222 30.73 17.53 43.39 4.63
4815 5021 2.989173 AATCGGAGGTATCCCGCGGA 62.989 60.000 30.73 13.82 46.10 5.54
4816 5022 2.571216 AATCGGAGGTATCCCGCGG 61.571 63.158 21.04 21.04 46.10 6.46
4817 5023 1.372997 CAATCGGAGGTATCCCGCG 60.373 63.158 0.00 0.00 46.10 6.46
4818 5024 0.038159 CTCAATCGGAGGTATCCCGC 60.038 60.000 0.00 0.00 46.10 6.13
4820 5026 3.917072 GCTCAATCGGAGGTATCCC 57.083 57.895 0.00 0.00 43.39 3.85
4826 5032 0.742281 CCACACAGCTCAATCGGAGG 60.742 60.000 0.00 0.00 44.22 4.30
4827 5033 0.036952 ACCACACAGCTCAATCGGAG 60.037 55.000 0.00 0.00 46.93 4.63
4828 5034 0.037326 GACCACACAGCTCAATCGGA 60.037 55.000 0.00 0.00 0.00 4.55
4829 5035 1.354337 CGACCACACAGCTCAATCGG 61.354 60.000 0.00 0.00 0.00 4.18
4830 5036 0.667487 ACGACCACACAGCTCAATCG 60.667 55.000 0.00 0.00 0.00 3.34
4831 5037 1.071605 GACGACCACACAGCTCAATC 58.928 55.000 0.00 0.00 0.00 2.67
4832 5038 0.681733 AGACGACCACACAGCTCAAT 59.318 50.000 0.00 0.00 0.00 2.57
4833 5039 0.464036 AAGACGACCACACAGCTCAA 59.536 50.000 0.00 0.00 0.00 3.02
4834 5040 0.032130 GAAGACGACCACACAGCTCA 59.968 55.000 0.00 0.00 0.00 4.26
4835 5041 1.004277 CGAAGACGACCACACAGCTC 61.004 60.000 0.00 0.00 42.66 4.09
4836 5042 1.007271 CGAAGACGACCACACAGCT 60.007 57.895 0.00 0.00 42.66 4.24
4837 5043 2.658707 GCGAAGACGACCACACAGC 61.659 63.158 0.00 0.00 42.66 4.40
4838 5044 0.597637 AAGCGAAGACGACCACACAG 60.598 55.000 0.00 0.00 42.66 3.66
4839 5045 0.596600 GAAGCGAAGACGACCACACA 60.597 55.000 0.00 0.00 42.66 3.72
4840 5046 1.606350 CGAAGCGAAGACGACCACAC 61.606 60.000 0.00 0.00 42.66 3.82
4841 5047 1.371267 CGAAGCGAAGACGACCACA 60.371 57.895 0.00 0.00 42.66 4.17
4842 5048 3.449042 CGAAGCGAAGACGACCAC 58.551 61.111 0.00 0.00 42.66 4.16
4855 5061 1.522355 ATGCATGGAGACCGCGAAG 60.522 57.895 8.23 0.00 0.00 3.79
4856 5062 1.815003 CATGCATGGAGACCGCGAA 60.815 57.895 19.40 0.00 0.00 4.70
4857 5063 2.031674 ATCATGCATGGAGACCGCGA 62.032 55.000 25.97 4.08 0.00 5.87
4858 5064 1.596203 ATCATGCATGGAGACCGCG 60.596 57.895 25.97 0.00 0.00 6.46
4859 5065 0.533531 TCATCATGCATGGAGACCGC 60.534 55.000 25.97 0.00 32.64 5.68
4860 5066 1.804748 CATCATCATGCATGGAGACCG 59.195 52.381 25.97 14.19 32.64 4.79
4861 5067 2.160205 CCATCATCATGCATGGAGACC 58.840 52.381 25.97 0.00 42.11 3.85
4862 5068 2.552743 CACCATCATCATGCATGGAGAC 59.447 50.000 25.97 0.00 42.11 3.36
4863 5069 2.440253 TCACCATCATCATGCATGGAGA 59.560 45.455 25.97 22.27 42.11 3.71
4864 5070 2.858745 TCACCATCATCATGCATGGAG 58.141 47.619 25.97 18.04 42.11 3.86
4865 5071 3.153919 CATCACCATCATCATGCATGGA 58.846 45.455 25.97 16.54 42.11 3.41
4866 5072 2.890945 ACATCACCATCATCATGCATGG 59.109 45.455 25.97 13.44 44.68 3.66
4867 5073 3.317993 ACACATCACCATCATCATGCATG 59.682 43.478 21.07 21.07 0.00 4.06
4868 5074 3.317993 CACACATCACCATCATCATGCAT 59.682 43.478 0.00 0.00 0.00 3.96
4869 5075 2.685897 CACACATCACCATCATCATGCA 59.314 45.455 0.00 0.00 0.00 3.96
4870 5076 2.686405 ACACACATCACCATCATCATGC 59.314 45.455 0.00 0.00 0.00 4.06
4871 5077 4.976224 AACACACATCACCATCATCATG 57.024 40.909 0.00 0.00 0.00 3.07
4872 5078 4.158949 CCAAACACACATCACCATCATCAT 59.841 41.667 0.00 0.00 0.00 2.45
4873 5079 3.506844 CCAAACACACATCACCATCATCA 59.493 43.478 0.00 0.00 0.00 3.07
4874 5080 3.119388 CCCAAACACACATCACCATCATC 60.119 47.826 0.00 0.00 0.00 2.92
4875 5081 2.827322 CCCAAACACACATCACCATCAT 59.173 45.455 0.00 0.00 0.00 2.45
4876 5082 2.237643 CCCAAACACACATCACCATCA 58.762 47.619 0.00 0.00 0.00 3.07
4877 5083 1.067635 GCCCAAACACACATCACCATC 60.068 52.381 0.00 0.00 0.00 3.51
4878 5084 0.968405 GCCCAAACACACATCACCAT 59.032 50.000 0.00 0.00 0.00 3.55
4879 5085 1.451337 CGCCCAAACACACATCACCA 61.451 55.000 0.00 0.00 0.00 4.17
4880 5086 1.285641 CGCCCAAACACACATCACC 59.714 57.895 0.00 0.00 0.00 4.02
4881 5087 4.942090 CGCCCAAACACACATCAC 57.058 55.556 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.