Multiple sequence alignment - TraesCS4B01G047400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G047400 chr4B 100.000 4643 0 0 1 4643 34726118 34721476 0.000000e+00 8575.0
1 TraesCS4B01G047400 chr4A 86.259 1994 145 61 2751 4643 579430061 579432026 0.000000e+00 2045.0
2 TraesCS4B01G047400 chr4A 90.839 1299 76 17 1472 2753 579428702 579429974 0.000000e+00 1700.0
3 TraesCS4B01G047400 chr4A 81.644 730 66 32 693 1410 579428005 579428678 1.140000e-150 544.0
4 TraesCS4B01G047400 chr4A 81.726 197 13 8 308 487 579427727 579427917 4.840000e-30 143.0
5 TraesCS4B01G047400 chr4A 81.522 92 13 4 1378 1467 738033377 738033466 6.440000e-09 73.1
6 TraesCS4B01G047400 chr4D 86.696 1120 73 44 2751 3843 22947710 22946640 0.000000e+00 1173.0
7 TraesCS4B01G047400 chr4D 94.136 631 26 4 2127 2753 22948405 22947782 0.000000e+00 950.0
8 TraesCS4B01G047400 chr4D 93.153 555 26 3 4099 4643 22945894 22945342 0.000000e+00 804.0
9 TraesCS4B01G047400 chr4D 89.539 564 40 9 1474 2026 22949109 22948554 0.000000e+00 697.0
10 TraesCS4B01G047400 chr4D 79.476 955 64 53 232 1137 22950403 22949532 1.460000e-154 556.0
11 TraesCS4B01G047400 chr2D 83.951 243 27 7 1 234 222852023 222852262 6.050000e-54 222.0
12 TraesCS4B01G047400 chr2D 82.759 87 9 5 1384 1467 518804295 518804212 6.440000e-09 73.1
13 TraesCS4B01G047400 chr7B 89.011 182 13 4 1 179 221837336 221837159 7.820000e-53 219.0
14 TraesCS4B01G047400 chr3B 86.935 199 13 6 1 191 723472869 723472676 1.310000e-50 211.0
15 TraesCS4B01G047400 chr3B 84.043 188 16 8 51 234 487764653 487764830 7.990000e-38 169.0
16 TraesCS4B01G047400 chr1B 87.978 183 11 5 1 179 621995557 621995382 6.090000e-49 206.0
17 TraesCS4B01G047400 chr1B 81.818 88 10 5 1383 1467 547029545 547029461 8.340000e-08 69.4
18 TraesCS4B01G047400 chr1D 82.231 242 26 8 1 232 470488977 470489211 4.740000e-45 193.0
19 TraesCS4B01G047400 chr1D 85.057 87 7 6 1384 1467 185075000 185074917 2.980000e-12 84.2
20 TraesCS4B01G047400 chr6D 85.263 190 19 5 51 236 91075814 91075998 2.210000e-43 187.0
21 TraesCS4B01G047400 chr2B 80.556 252 21 11 1 232 687249704 687249461 7.990000e-38 169.0
22 TraesCS4B01G047400 chr6B 84.746 177 15 6 1 173 103266047 103266215 2.870000e-37 167.0
23 TraesCS4B01G047400 chr6B 80.899 89 11 5 1382 1467 49553388 49553303 1.080000e-06 65.8
24 TraesCS4B01G047400 chr7A 80.000 200 15 16 51 234 189340507 189340317 1.750000e-24 124.0
25 TraesCS4B01G047400 chr6A 79.397 199 20 12 51 234 14143245 14143437 2.270000e-23 121.0
26 TraesCS4B01G047400 chr6A 77.273 264 23 17 1 245 447113985 447114230 2.270000e-23 121.0
27 TraesCS4B01G047400 chr6A 79.500 200 18 14 51 234 594952790 594952982 2.270000e-23 121.0
28 TraesCS4B01G047400 chr5B 90.244 82 4 1 1 78 683353661 683353742 2.290000e-18 104.0
29 TraesCS4B01G047400 chr5B 84.932 73 10 1 1382 1454 693120372 693120443 6.440000e-09 73.1
30 TraesCS4B01G047400 chr3A 84.884 86 7 5 1385 1467 637283435 637283353 1.070000e-11 82.4
31 TraesCS4B01G047400 chr2A 85.526 76 5 4 1384 1456 690525474 690525546 1.790000e-09 75.0
32 TraesCS4B01G047400 chr3D 83.544 79 7 5 1379 1454 423387501 423387576 8.340000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G047400 chr4B 34721476 34726118 4642 True 8575 8575 100.000 1 4643 1 chr4B.!!$R1 4642
1 TraesCS4B01G047400 chr4A 579427727 579432026 4299 False 1108 2045 85.117 308 4643 4 chr4A.!!$F2 4335
2 TraesCS4B01G047400 chr4D 22945342 22950403 5061 True 836 1173 88.600 232 4643 5 chr4D.!!$R1 4411

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.027586 GACACGACAGGCACAACAAC 59.972 55.0 0.00 0.00 0.0 3.32 F
604 631 0.038801 GCACTTTCAGCAGGGCTTTC 60.039 55.0 0.00 0.00 40.4 2.62 F
1860 2158 0.036875 GGTAAGCCCTTGACTGCACT 59.963 55.0 0.00 0.00 0.0 4.40 F
2239 2596 0.036010 AGGCTGAAGAACCATGGTCG 60.036 55.0 20.07 4.01 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1744 0.029989 AATGTACTCCCTCCCTCCCC 60.030 60.0 0.00 0.0 0.0 4.81 R
2119 2476 0.370273 CACAGATGACCTAAACGCGC 59.630 55.0 5.73 0.0 0.0 6.86 R
3003 3463 0.320771 ACGGCAGATCAAGGTGACAC 60.321 55.0 0.00 0.0 0.0 3.67 R
3817 4326 0.524862 GAGATGTTTGCAGGCCACAG 59.475 55.0 5.01 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.715434 TTATGTTTAAGTGGACTTTGGCC 57.285 39.130 0.00 0.00 37.40 5.36
27 28 1.950909 TGTTTAAGTGGACTTTGGCCG 59.049 47.619 0.00 0.00 37.40 6.13
28 29 1.268625 GTTTAAGTGGACTTTGGCCGG 59.731 52.381 0.00 0.00 37.40 6.13
29 30 0.891904 TTAAGTGGACTTTGGCCGGC 60.892 55.000 21.18 21.18 37.40 6.13
45 46 2.125269 GCGACCGGCCACTTATGT 60.125 61.111 0.00 0.00 34.80 2.29
46 47 1.743995 GCGACCGGCCACTTATGTT 60.744 57.895 0.00 0.00 34.80 2.71
47 48 1.303091 GCGACCGGCCACTTATGTTT 61.303 55.000 0.00 0.00 34.80 2.83
48 49 1.161843 CGACCGGCCACTTATGTTTT 58.838 50.000 0.00 0.00 0.00 2.43
49 50 2.348660 CGACCGGCCACTTATGTTTTA 58.651 47.619 0.00 0.00 0.00 1.52
50 51 2.940410 CGACCGGCCACTTATGTTTTAT 59.060 45.455 0.00 0.00 0.00 1.40
51 52 3.375922 CGACCGGCCACTTATGTTTTATT 59.624 43.478 0.00 0.00 0.00 1.40
52 53 4.571580 CGACCGGCCACTTATGTTTTATTA 59.428 41.667 0.00 0.00 0.00 0.98
53 54 5.237779 CGACCGGCCACTTATGTTTTATTAT 59.762 40.000 0.00 0.00 0.00 1.28
54 55 6.385649 ACCGGCCACTTATGTTTTATTATG 57.614 37.500 0.00 0.00 0.00 1.90
55 56 5.889289 ACCGGCCACTTATGTTTTATTATGT 59.111 36.000 0.00 0.00 0.00 2.29
56 57 6.378848 ACCGGCCACTTATGTTTTATTATGTT 59.621 34.615 0.00 0.00 0.00 2.71
57 58 7.093684 ACCGGCCACTTATGTTTTATTATGTTT 60.094 33.333 0.00 0.00 0.00 2.83
58 59 8.407064 CCGGCCACTTATGTTTTATTATGTTTA 58.593 33.333 2.24 0.00 0.00 2.01
59 60 9.959749 CGGCCACTTATGTTTTATTATGTTTAT 57.040 29.630 2.24 0.00 0.00 1.40
82 83 7.938563 ATTTTAAGTTTATTTCGTGCAAGCA 57.061 28.000 0.00 0.00 0.00 3.91
83 84 7.938563 TTTTAAGTTTATTTCGTGCAAGCAT 57.061 28.000 0.00 0.00 0.00 3.79
84 85 9.632807 ATTTTAAGTTTATTTCGTGCAAGCATA 57.367 25.926 0.00 0.00 0.00 3.14
85 86 9.632807 TTTTAAGTTTATTTCGTGCAAGCATAT 57.367 25.926 0.00 0.00 0.00 1.78
86 87 9.632807 TTTAAGTTTATTTCGTGCAAGCATATT 57.367 25.926 0.00 0.00 0.00 1.28
87 88 9.632807 TTAAGTTTATTTCGTGCAAGCATATTT 57.367 25.926 0.00 0.00 0.00 1.40
88 89 8.532977 AAGTTTATTTCGTGCAAGCATATTTT 57.467 26.923 0.00 0.00 0.00 1.82
89 90 8.532977 AGTTTATTTCGTGCAAGCATATTTTT 57.467 26.923 0.00 0.00 0.00 1.94
114 115 2.184836 CCATGCCGGCACATTTGG 59.815 61.111 35.50 30.84 0.00 3.28
115 116 2.184836 CATGCCGGCACATTTGGG 59.815 61.111 35.50 11.48 0.00 4.12
116 117 2.283821 ATGCCGGCACATTTGGGT 60.284 55.556 35.50 10.89 0.00 4.51
117 118 2.350458 ATGCCGGCACATTTGGGTC 61.350 57.895 35.50 0.00 0.00 4.46
118 119 2.676471 GCCGGCACATTTGGGTCT 60.676 61.111 24.80 0.00 0.00 3.85
119 120 2.993471 GCCGGCACATTTGGGTCTG 61.993 63.158 24.80 0.00 0.00 3.51
120 121 2.568090 CGGCACATTTGGGTCTGC 59.432 61.111 0.00 0.00 0.00 4.26
121 122 2.973082 GGCACATTTGGGTCTGCC 59.027 61.111 0.00 0.00 42.41 4.85
122 123 1.607467 GGCACATTTGGGTCTGCCT 60.607 57.895 0.12 0.00 44.99 4.75
123 124 1.598701 GGCACATTTGGGTCTGCCTC 61.599 60.000 0.12 0.00 44.99 4.70
124 125 1.598701 GCACATTTGGGTCTGCCTCC 61.599 60.000 0.00 0.00 34.45 4.30
125 126 0.967380 CACATTTGGGTCTGCCTCCC 60.967 60.000 1.60 1.60 44.81 4.30
126 127 1.380380 CATTTGGGTCTGCCTCCCC 60.380 63.158 5.67 0.68 44.00 4.81
127 128 2.983879 ATTTGGGTCTGCCTCCCCG 61.984 63.158 5.67 0.00 44.44 5.73
128 129 4.974438 TTGGGTCTGCCTCCCCGT 62.974 66.667 5.67 0.00 44.44 5.28
129 130 4.974438 TGGGTCTGCCTCCCCGTT 62.974 66.667 5.67 0.00 44.44 4.44
130 131 4.410400 GGGTCTGCCTCCCCGTTG 62.410 72.222 0.00 0.00 39.08 4.10
131 132 4.410400 GGTCTGCCTCCCCGTTGG 62.410 72.222 0.00 0.00 0.00 3.77
132 133 3.319198 GTCTGCCTCCCCGTTGGA 61.319 66.667 0.00 0.00 42.41 3.53
133 134 2.285368 TCTGCCTCCCCGTTGGAT 60.285 61.111 0.00 0.00 44.07 3.41
134 135 2.124570 CTGCCTCCCCGTTGGATG 60.125 66.667 0.00 0.00 44.07 3.51
135 136 3.704231 CTGCCTCCCCGTTGGATGG 62.704 68.421 0.00 0.00 44.07 3.51
136 137 3.728373 GCCTCCCCGTTGGATGGT 61.728 66.667 0.00 0.00 44.07 3.55
137 138 2.590092 CCTCCCCGTTGGATGGTC 59.410 66.667 0.00 0.00 44.07 4.02
138 139 2.297895 CCTCCCCGTTGGATGGTCA 61.298 63.158 0.00 0.00 44.07 4.02
139 140 1.682849 CTCCCCGTTGGATGGTCAA 59.317 57.895 0.00 0.00 44.07 3.18
140 141 0.392998 CTCCCCGTTGGATGGTCAAG 60.393 60.000 0.00 0.00 44.07 3.02
141 142 2.046285 CCCCGTTGGATGGTCAAGC 61.046 63.158 0.00 0.00 35.39 4.01
142 143 2.046285 CCCGTTGGATGGTCAAGCC 61.046 63.158 0.00 0.00 37.90 4.35
143 144 2.398554 CCGTTGGATGGTCAAGCCG 61.399 63.158 0.00 0.00 41.21 5.52
144 145 1.375396 CGTTGGATGGTCAAGCCGA 60.375 57.895 0.00 0.00 41.21 5.54
145 146 1.635663 CGTTGGATGGTCAAGCCGAC 61.636 60.000 0.00 0.00 44.57 4.79
154 155 2.913777 GTCAAGCCGACCCATTTTAC 57.086 50.000 0.00 0.00 38.85 2.01
155 156 2.156098 GTCAAGCCGACCCATTTTACA 58.844 47.619 0.00 0.00 38.85 2.41
156 157 2.554893 GTCAAGCCGACCCATTTTACAA 59.445 45.455 0.00 0.00 38.85 2.41
157 158 3.192633 GTCAAGCCGACCCATTTTACAAT 59.807 43.478 0.00 0.00 38.85 2.71
158 159 4.396790 GTCAAGCCGACCCATTTTACAATA 59.603 41.667 0.00 0.00 38.85 1.90
159 160 4.396790 TCAAGCCGACCCATTTTACAATAC 59.603 41.667 0.00 0.00 0.00 1.89
160 161 2.940410 AGCCGACCCATTTTACAATACG 59.060 45.455 0.00 0.00 0.00 3.06
161 162 2.032426 GCCGACCCATTTTACAATACGG 59.968 50.000 0.00 0.00 40.60 4.02
162 163 3.533547 CCGACCCATTTTACAATACGGA 58.466 45.455 0.00 0.00 40.16 4.69
163 164 3.310501 CCGACCCATTTTACAATACGGAC 59.689 47.826 0.00 0.00 40.16 4.79
164 165 3.000523 CGACCCATTTTACAATACGGACG 59.999 47.826 0.00 0.00 0.00 4.79
165 166 2.679336 ACCCATTTTACAATACGGACGC 59.321 45.455 0.00 0.00 0.00 5.19
166 167 2.285950 CCCATTTTACAATACGGACGCG 60.286 50.000 3.53 3.53 0.00 6.01
167 168 2.359598 CATTTTACAATACGGACGCGC 58.640 47.619 5.73 0.00 0.00 6.86
168 169 1.426423 TTTTACAATACGGACGCGCA 58.574 45.000 5.73 0.00 0.00 6.09
169 170 0.714994 TTTACAATACGGACGCGCAC 59.285 50.000 5.73 0.00 0.00 5.34
183 184 2.970324 GCACGTCCGCCTGACAAA 60.970 61.111 0.00 0.00 44.71 2.83
184 185 2.539338 GCACGTCCGCCTGACAAAA 61.539 57.895 0.00 0.00 44.71 2.44
185 186 2.018544 CACGTCCGCCTGACAAAAA 58.981 52.632 0.00 0.00 44.71 1.94
186 187 0.316689 CACGTCCGCCTGACAAAAAC 60.317 55.000 0.00 0.00 44.71 2.43
187 188 1.083015 CGTCCGCCTGACAAAAACG 60.083 57.895 2.37 0.00 44.71 3.60
188 189 1.281656 GTCCGCCTGACAAAAACGG 59.718 57.895 0.00 0.00 43.85 4.44
189 190 3.739167 CCGCCTGACAAAAACGGA 58.261 55.556 0.00 0.00 46.71 4.69
190 191 1.281656 CCGCCTGACAAAAACGGAC 59.718 57.895 0.00 0.00 46.71 4.79
191 192 1.440938 CCGCCTGACAAAAACGGACA 61.441 55.000 0.00 0.00 46.71 4.02
192 193 0.378962 CGCCTGACAAAAACGGACAA 59.621 50.000 0.00 0.00 0.00 3.18
193 194 1.202200 CGCCTGACAAAAACGGACAAA 60.202 47.619 0.00 0.00 0.00 2.83
194 195 2.732597 CGCCTGACAAAAACGGACAAAA 60.733 45.455 0.00 0.00 0.00 2.44
195 196 2.601314 GCCTGACAAAAACGGACAAAAC 59.399 45.455 0.00 0.00 0.00 2.43
196 197 2.849473 CCTGACAAAAACGGACAAAACG 59.151 45.455 0.00 0.00 37.36 3.60
197 198 2.251893 TGACAAAAACGGACAAAACGC 58.748 42.857 0.00 0.00 34.00 4.84
198 199 1.250749 GACAAAAACGGACAAAACGCG 59.749 47.619 3.53 3.53 34.00 6.01
199 200 1.261097 CAAAAACGGACAAAACGCGT 58.739 45.000 5.58 5.58 34.00 6.01
200 201 1.007933 CAAAAACGGACAAAACGCGTG 60.008 47.619 14.98 2.21 34.00 5.34
201 202 1.135114 AAAACGGACAAAACGCGTGC 61.135 50.000 14.98 0.00 34.00 5.34
202 203 1.984321 AAACGGACAAAACGCGTGCT 61.984 50.000 14.98 0.00 34.00 4.40
203 204 2.425124 CGGACAAAACGCGTGCTG 60.425 61.111 14.98 16.14 0.00 4.41
204 205 2.051345 GGACAAAACGCGTGCTGG 60.051 61.111 14.98 2.95 0.00 4.85
205 206 2.713154 GACAAAACGCGTGCTGGT 59.287 55.556 14.98 6.98 0.00 4.00
206 207 1.063488 GACAAAACGCGTGCTGGTT 59.937 52.632 14.98 0.00 0.00 3.67
207 208 0.524604 GACAAAACGCGTGCTGGTTT 60.525 50.000 14.98 6.22 37.94 3.27
208 209 0.800300 ACAAAACGCGTGCTGGTTTG 60.800 50.000 24.30 24.30 36.55 2.93
209 210 1.226831 AAAACGCGTGCTGGTTTGG 60.227 52.632 14.98 0.00 36.55 3.28
210 211 2.621371 AAAACGCGTGCTGGTTTGGG 62.621 55.000 14.98 0.00 36.55 4.12
211 212 4.868116 ACGCGTGCTGGTTTGGGT 62.868 61.111 12.93 0.00 0.00 4.51
212 213 4.025401 CGCGTGCTGGTTTGGGTC 62.025 66.667 0.00 0.00 0.00 4.46
213 214 4.025401 GCGTGCTGGTTTGGGTCG 62.025 66.667 0.00 0.00 0.00 4.79
214 215 4.025401 CGTGCTGGTTTGGGTCGC 62.025 66.667 0.00 0.00 0.00 5.19
215 216 3.670377 GTGCTGGTTTGGGTCGCC 61.670 66.667 0.00 0.00 0.00 5.54
216 217 4.966787 TGCTGGTTTGGGTCGCCC 62.967 66.667 7.87 7.87 45.71 6.13
226 227 4.324991 GGTCGCCCCGTTGGAGTT 62.325 66.667 0.00 0.00 35.07 3.01
227 228 3.047877 GTCGCCCCGTTGGAGTTG 61.048 66.667 0.00 0.00 35.07 3.16
230 231 3.056328 GCCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 35.39 4.26
239 240 3.326747 GTTGGAGTTGCTCTAACGATGT 58.673 45.455 9.06 0.00 40.83 3.06
246 247 1.132453 TGCTCTAACGATGTCACGAGG 59.868 52.381 0.00 0.00 37.03 4.63
249 250 0.102481 CTAACGATGTCACGAGGGGG 59.898 60.000 0.00 0.00 37.03 5.40
268 269 0.512952 GATGACACGACAGGCACAAC 59.487 55.000 0.00 0.00 0.00 3.32
270 271 0.391793 TGACACGACAGGCACAACAA 60.392 50.000 0.00 0.00 0.00 2.83
271 272 0.027586 GACACGACAGGCACAACAAC 59.972 55.000 0.00 0.00 0.00 3.32
272 273 0.392461 ACACGACAGGCACAACAACT 60.392 50.000 0.00 0.00 0.00 3.16
278 279 1.949525 ACAGGCACAACAACTTAGCTG 59.050 47.619 0.00 0.00 0.00 4.24
283 284 2.603173 GCACAACAACTTAGCTGCTCAC 60.603 50.000 4.91 0.00 0.00 3.51
284 285 2.613595 CACAACAACTTAGCTGCTCACA 59.386 45.455 4.91 0.00 0.00 3.58
285 286 2.614057 ACAACAACTTAGCTGCTCACAC 59.386 45.455 4.91 0.00 0.00 3.82
286 287 2.613595 CAACAACTTAGCTGCTCACACA 59.386 45.455 4.91 0.00 0.00 3.72
287 288 3.131709 ACAACTTAGCTGCTCACACAT 57.868 42.857 4.91 0.00 0.00 3.21
289 290 2.810274 CAACTTAGCTGCTCACACATGT 59.190 45.455 4.91 0.00 0.00 3.21
290 291 2.693069 ACTTAGCTGCTCACACATGTC 58.307 47.619 4.91 0.00 0.00 3.06
291 292 2.005451 CTTAGCTGCTCACACATGTCC 58.995 52.381 4.91 0.00 0.00 4.02
304 315 1.351017 ACATGTCCCGAAGTCATGGTT 59.649 47.619 13.80 0.00 41.91 3.67
306 317 3.008594 ACATGTCCCGAAGTCATGGTTAA 59.991 43.478 13.80 0.00 41.91 2.01
356 369 3.448686 CAGTGGTCGCTTTCCTACATAG 58.551 50.000 0.00 0.00 0.00 2.23
357 370 3.130516 CAGTGGTCGCTTTCCTACATAGA 59.869 47.826 0.00 0.00 0.00 1.98
358 371 3.381908 AGTGGTCGCTTTCCTACATAGAG 59.618 47.826 0.00 0.00 0.00 2.43
359 372 3.130693 GTGGTCGCTTTCCTACATAGAGT 59.869 47.826 0.00 0.00 0.00 3.24
360 373 4.337555 GTGGTCGCTTTCCTACATAGAGTA 59.662 45.833 0.00 0.00 0.00 2.59
397 410 0.241213 ACGTCTCACTCATGTCACCG 59.759 55.000 0.00 0.00 0.00 4.94
402 415 3.010420 TCTCACTCATGTCACCGTCTAG 58.990 50.000 0.00 0.00 0.00 2.43
435 457 1.040646 GGTCAGTCAGTCAGTCCACA 58.959 55.000 0.00 0.00 0.00 4.17
488 515 1.962807 TGAATTTGCCCTTCACCACTG 59.037 47.619 0.00 0.00 0.00 3.66
489 516 1.273327 GAATTTGCCCTTCACCACTGG 59.727 52.381 0.00 0.00 0.00 4.00
490 517 0.482446 ATTTGCCCTTCACCACTGGA 59.518 50.000 0.71 0.00 0.00 3.86
491 518 0.178992 TTTGCCCTTCACCACTGGAG 60.179 55.000 0.71 0.00 0.00 3.86
492 519 1.352622 TTGCCCTTCACCACTGGAGT 61.353 55.000 0.71 0.00 0.00 3.85
493 520 0.472925 TGCCCTTCACCACTGGAGTA 60.473 55.000 0.71 0.00 0.00 2.59
494 521 0.250513 GCCCTTCACCACTGGAGTAG 59.749 60.000 0.71 0.00 0.00 2.57
495 522 1.645710 CCCTTCACCACTGGAGTAGT 58.354 55.000 0.71 0.00 41.36 2.73
496 523 2.816411 CCCTTCACCACTGGAGTAGTA 58.184 52.381 0.71 0.00 37.60 1.82
497 524 2.761208 CCCTTCACCACTGGAGTAGTAG 59.239 54.545 0.71 0.00 37.60 2.57
498 525 2.166664 CCTTCACCACTGGAGTAGTAGC 59.833 54.545 0.71 0.00 37.60 3.58
499 526 2.597578 TCACCACTGGAGTAGTAGCA 57.402 50.000 0.71 0.00 37.60 3.49
500 527 2.168496 TCACCACTGGAGTAGTAGCAC 58.832 52.381 0.71 0.00 37.60 4.40
501 528 2.171840 CACCACTGGAGTAGTAGCACT 58.828 52.381 0.71 0.00 37.60 4.40
502 529 2.094494 CACCACTGGAGTAGTAGCACTG 60.094 54.545 0.71 0.00 37.60 3.66
503 530 1.478510 CCACTGGAGTAGTAGCACTGG 59.521 57.143 0.00 0.00 37.60 4.00
504 531 1.134965 CACTGGAGTAGTAGCACTGGC 60.135 57.143 0.00 0.00 37.60 4.85
541 568 2.446435 GCATAAGCAAAGGGGAAGTCA 58.554 47.619 0.00 0.00 41.58 3.41
542 569 2.424956 GCATAAGCAAAGGGGAAGTCAG 59.575 50.000 0.00 0.00 41.58 3.51
543 570 2.200373 TAAGCAAAGGGGAAGTCAGC 57.800 50.000 0.00 0.00 0.00 4.26
544 571 0.540597 AAGCAAAGGGGAAGTCAGCC 60.541 55.000 0.00 0.00 0.00 4.85
545 572 1.228552 GCAAAGGGGAAGTCAGCCA 60.229 57.895 0.00 0.00 0.00 4.75
579 606 2.362632 CTCCTTCCCCGACCGAGT 60.363 66.667 0.00 0.00 0.00 4.18
585 612 1.895020 TTCCCCGACCGAGTGAATGG 61.895 60.000 0.00 0.00 0.00 3.16
597 624 2.342910 GTGAATGGCACTTTCAGCAG 57.657 50.000 3.84 0.00 44.27 4.24
598 625 1.068055 GTGAATGGCACTTTCAGCAGG 60.068 52.381 3.84 0.00 44.27 4.85
599 626 0.529378 GAATGGCACTTTCAGCAGGG 59.471 55.000 0.00 0.00 0.00 4.45
600 627 1.538687 AATGGCACTTTCAGCAGGGC 61.539 55.000 0.00 0.00 43.14 5.19
602 629 1.905354 GGCACTTTCAGCAGGGCTT 60.905 57.895 0.00 0.00 43.42 4.35
603 630 1.466851 GGCACTTTCAGCAGGGCTTT 61.467 55.000 0.00 0.00 43.42 3.51
604 631 0.038801 GCACTTTCAGCAGGGCTTTC 60.039 55.000 0.00 0.00 40.40 2.62
605 632 1.613836 CACTTTCAGCAGGGCTTTCT 58.386 50.000 0.00 0.00 36.40 2.52
607 634 3.149196 CACTTTCAGCAGGGCTTTCTTA 58.851 45.455 0.00 0.00 36.40 2.10
608 635 3.569701 CACTTTCAGCAGGGCTTTCTTAA 59.430 43.478 0.00 0.00 36.40 1.85
609 636 4.219288 CACTTTCAGCAGGGCTTTCTTAAT 59.781 41.667 0.00 0.00 36.40 1.40
610 637 4.835056 ACTTTCAGCAGGGCTTTCTTAATT 59.165 37.500 0.00 0.00 36.40 1.40
611 638 5.305386 ACTTTCAGCAGGGCTTTCTTAATTT 59.695 36.000 0.00 0.00 36.40 1.82
612 639 5.806654 TTCAGCAGGGCTTTCTTAATTTT 57.193 34.783 0.00 0.00 36.40 1.82
614 641 6.909550 TCAGCAGGGCTTTCTTAATTTTAA 57.090 33.333 0.00 0.00 36.40 1.52
615 642 7.480760 TCAGCAGGGCTTTCTTAATTTTAAT 57.519 32.000 0.00 0.00 36.40 1.40
616 643 7.906327 TCAGCAGGGCTTTCTTAATTTTAATT 58.094 30.769 0.00 0.00 36.40 1.40
676 708 2.746803 GGTTGTCCGTACGCATGGC 61.747 63.158 10.49 0.00 0.00 4.40
689 721 1.809619 CATGGCGTCCCGTGTACTG 60.810 63.158 0.00 0.00 42.18 2.74
762 819 0.682209 AGGACAGCCGTACGTACCAT 60.682 55.000 19.67 3.26 39.96 3.55
764 821 0.590732 GACAGCCGTACGTACCATCG 60.591 60.000 19.67 8.17 0.00 3.84
805 873 1.076632 AACGCCCACCAACCTTTCA 60.077 52.632 0.00 0.00 0.00 2.69
896 964 2.440247 CCCTGTCCCGCATTTCCC 60.440 66.667 0.00 0.00 0.00 3.97
900 968 0.745845 CTGTCCCGCATTTCCCAGAG 60.746 60.000 0.00 0.00 0.00 3.35
901 969 1.198094 TGTCCCGCATTTCCCAGAGA 61.198 55.000 0.00 0.00 0.00 3.10
902 970 0.462759 GTCCCGCATTTCCCAGAGAG 60.463 60.000 0.00 0.00 0.00 3.20
903 971 1.821332 CCCGCATTTCCCAGAGAGC 60.821 63.158 0.00 0.00 0.00 4.09
904 972 1.222936 CCGCATTTCCCAGAGAGCT 59.777 57.895 0.00 0.00 0.00 4.09
905 973 0.465705 CCGCATTTCCCAGAGAGCTA 59.534 55.000 0.00 0.00 0.00 3.32
906 974 1.576356 CGCATTTCCCAGAGAGCTAC 58.424 55.000 0.00 0.00 0.00 3.58
907 975 1.808133 CGCATTTCCCAGAGAGCTACC 60.808 57.143 0.00 0.00 0.00 3.18
908 976 1.210478 GCATTTCCCAGAGAGCTACCA 59.790 52.381 0.00 0.00 0.00 3.25
909 977 2.158696 GCATTTCCCAGAGAGCTACCAT 60.159 50.000 0.00 0.00 0.00 3.55
910 978 3.686691 GCATTTCCCAGAGAGCTACCATT 60.687 47.826 0.00 0.00 0.00 3.16
911 979 4.530875 CATTTCCCAGAGAGCTACCATTT 58.469 43.478 0.00 0.00 0.00 2.32
912 980 3.634397 TTCCCAGAGAGCTACCATTTG 57.366 47.619 0.00 0.00 0.00 2.32
913 981 1.210478 TCCCAGAGAGCTACCATTTGC 59.790 52.381 0.00 0.00 0.00 3.68
914 982 1.673168 CCAGAGAGCTACCATTTGCC 58.327 55.000 0.00 0.00 0.00 4.52
915 983 1.065199 CCAGAGAGCTACCATTTGCCA 60.065 52.381 0.00 0.00 0.00 4.92
916 984 2.012673 CAGAGAGCTACCATTTGCCAC 58.987 52.381 0.00 0.00 0.00 5.01
917 985 1.912043 AGAGAGCTACCATTTGCCACT 59.088 47.619 0.00 0.00 0.00 4.00
918 986 3.107601 AGAGAGCTACCATTTGCCACTA 58.892 45.455 0.00 0.00 0.00 2.74
919 987 3.118592 AGAGAGCTACCATTTGCCACTAC 60.119 47.826 0.00 0.00 0.00 2.73
920 988 2.571653 AGAGCTACCATTTGCCACTACA 59.428 45.455 0.00 0.00 0.00 2.74
934 1002 2.530701 CACTACAACACCTCTCCCTCT 58.469 52.381 0.00 0.00 0.00 3.69
943 1021 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
957 1035 1.231641 CTCCCTCTCCATCTCCGGT 59.768 63.158 0.00 0.00 0.00 5.28
958 1036 0.478942 CTCCCTCTCCATCTCCGGTA 59.521 60.000 0.00 0.00 0.00 4.02
959 1037 0.478942 TCCCTCTCCATCTCCGGTAG 59.521 60.000 0.00 0.00 0.00 3.18
960 1038 0.540830 CCCTCTCCATCTCCGGTAGG 60.541 65.000 0.00 0.00 39.46 3.18
961 1039 1.182385 CCTCTCCATCTCCGGTAGGC 61.182 65.000 0.00 0.00 37.47 3.93
962 1040 0.178975 CTCTCCATCTCCGGTAGGCT 60.179 60.000 0.00 0.00 37.47 4.58
981 1062 0.981943 TCCGGGGGAAGAAGAAGAAC 59.018 55.000 0.00 0.00 0.00 3.01
983 1064 1.339151 CCGGGGGAAGAAGAAGAACAG 60.339 57.143 0.00 0.00 0.00 3.16
984 1065 1.827681 GGGGGAAGAAGAAGAACAGC 58.172 55.000 0.00 0.00 0.00 4.40
986 1067 2.155279 GGGGAAGAAGAAGAACAGCAC 58.845 52.381 0.00 0.00 0.00 4.40
989 1070 1.195674 GAAGAAGAAGAACAGCACGCC 59.804 52.381 0.00 0.00 0.00 5.68
990 1071 0.946221 AGAAGAAGAACAGCACGCCG 60.946 55.000 0.00 0.00 0.00 6.46
991 1072 1.901650 GAAGAAGAACAGCACGCCGG 61.902 60.000 0.00 0.00 0.00 6.13
992 1073 4.090057 GAAGAACAGCACGCCGGC 62.090 66.667 19.07 19.07 0.00 6.13
993 1074 4.927782 AAGAACAGCACGCCGGCA 62.928 61.111 28.98 0.00 35.83 5.69
994 1075 4.704833 AGAACAGCACGCCGGCAT 62.705 61.111 28.98 8.91 35.83 4.40
995 1076 4.166011 GAACAGCACGCCGGCATC 62.166 66.667 28.98 14.45 35.83 3.91
1093 1183 2.225779 TGGTAACATCCCTCTTCCTCCA 60.226 50.000 0.00 0.00 46.17 3.86
1154 1337 1.303888 CAAGTCAGGCAGGCCACAT 60.304 57.895 13.63 0.00 38.92 3.21
1183 1369 1.133668 CCTCCCCACAAATCCCATCTC 60.134 57.143 0.00 0.00 0.00 2.75
1232 1491 9.216117 ACTATACTAGTGCGTTTCTCAAATTTT 57.784 29.630 5.39 0.00 37.69 1.82
1255 1514 2.716969 AGCCCAGTAAAAACCCTTCTCT 59.283 45.455 0.00 0.00 0.00 3.10
1257 1516 3.255888 GCCCAGTAAAAACCCTTCTCTTG 59.744 47.826 0.00 0.00 0.00 3.02
1264 1528 9.516314 CAGTAAAAACCCTTCTCTTGTTTTTAG 57.484 33.333 15.74 6.02 46.58 1.85
1287 1557 3.382546 GCCTTGATCTGTTGCCAATATGT 59.617 43.478 0.00 0.00 0.00 2.29
1289 1559 5.625197 GCCTTGATCTGTTGCCAATATGTTT 60.625 40.000 0.00 0.00 0.00 2.83
1330 1612 3.853831 TGTTTGGCTATGTGCATCTTG 57.146 42.857 0.00 0.00 45.15 3.02
1350 1632 0.181350 GCTATGCCTTGGCTAGGTGT 59.819 55.000 16.33 7.96 46.61 4.16
1351 1633 1.408822 GCTATGCCTTGGCTAGGTGTT 60.409 52.381 16.33 4.58 46.61 3.32
1355 1637 1.589716 GCCTTGGCTAGGTGTTGCTG 61.590 60.000 16.33 0.00 46.61 4.41
1356 1638 0.962356 CCTTGGCTAGGTGTTGCTGG 60.962 60.000 6.84 0.00 39.39 4.85
1379 1661 7.225725 TGGTCATGATTTGTATCTGCATGATA 58.774 34.615 0.00 0.00 44.70 2.15
1430 1713 9.965902 ATAAGAGTGTTTTGGTCTAAATGATCT 57.034 29.630 0.00 0.00 0.00 2.75
1431 1714 8.697507 AAGAGTGTTTTGGTCTAAATGATCTT 57.302 30.769 0.00 0.00 0.00 2.40
1432 1715 8.697507 AGAGTGTTTTGGTCTAAATGATCTTT 57.302 30.769 0.00 0.00 0.00 2.52
1433 1716 8.571336 AGAGTGTTTTGGTCTAAATGATCTTTG 58.429 33.333 0.00 0.00 0.00 2.77
1434 1717 8.463930 AGTGTTTTGGTCTAAATGATCTTTGA 57.536 30.769 0.00 0.00 0.00 2.69
1435 1718 9.082313 AGTGTTTTGGTCTAAATGATCTTTGAT 57.918 29.630 0.00 0.00 0.00 2.57
1436 1719 9.346725 GTGTTTTGGTCTAAATGATCTTTGATC 57.653 33.333 0.00 0.98 0.00 2.92
1437 1720 9.300681 TGTTTTGGTCTAAATGATCTTTGATCT 57.699 29.630 8.71 0.00 0.00 2.75
1445 1728 9.383519 TCTAAATGATCTTTGATCTAAACGCTT 57.616 29.630 8.71 0.00 0.00 4.68
1462 1745 9.511144 CTAAACGCTTTTATATTTTTGTAGGGG 57.489 33.333 0.00 0.00 0.00 4.79
1463 1746 6.459670 ACGCTTTTATATTTTTGTAGGGGG 57.540 37.500 0.00 0.00 0.00 5.40
1520 1803 4.514066 GGGAAATCGGCATCGTACTTTTAT 59.486 41.667 0.00 0.00 37.69 1.40
1630 1922 1.203994 CCTAACCCACGACGACTCATT 59.796 52.381 0.00 0.00 0.00 2.57
1679 1976 3.245948 CTGTGACGGCACTGCAAGC 62.246 63.158 24.38 2.31 45.36 4.01
1701 1998 6.058183 AGCATGATATGTTCCTAACACTTCC 58.942 40.000 0.00 0.00 45.50 3.46
1773 2071 0.322816 TTGATGACCCCAGCAAGCTC 60.323 55.000 0.00 0.00 42.95 4.09
1860 2158 0.036875 GGTAAGCCCTTGACTGCACT 59.963 55.000 0.00 0.00 0.00 4.40
1866 2164 1.517242 CCCTTGACTGCACTCTTCAC 58.483 55.000 0.00 0.00 0.00 3.18
1867 2165 1.202687 CCCTTGACTGCACTCTTCACA 60.203 52.381 0.00 0.00 0.00 3.58
1873 2171 3.070878 TGACTGCACTCTTCACATAACCA 59.929 43.478 0.00 0.00 0.00 3.67
1874 2172 4.256920 GACTGCACTCTTCACATAACCAT 58.743 43.478 0.00 0.00 0.00 3.55
1924 2222 6.428799 GCTGAGCTAATCTGAATTTCATGTC 58.571 40.000 0.00 0.00 0.00 3.06
1991 2289 2.573463 AGGGGAACAACATCCTGGTAT 58.427 47.619 0.00 0.00 39.57 2.73
1992 2290 3.743132 AGGGGAACAACATCCTGGTATA 58.257 45.455 0.00 0.00 39.57 1.47
1993 2291 4.315993 AGGGGAACAACATCCTGGTATAT 58.684 43.478 0.00 0.00 39.57 0.86
1994 2292 5.482580 AGGGGAACAACATCCTGGTATATA 58.517 41.667 0.00 0.00 39.57 0.86
2098 2455 4.036734 TGTTCATGAGTGCTTTTTCACCTC 59.963 41.667 0.00 0.00 37.68 3.85
2104 2461 6.360370 TGAGTGCTTTTTCACCTCTAGTAT 57.640 37.500 0.00 0.00 37.68 2.12
2105 2462 6.769512 TGAGTGCTTTTTCACCTCTAGTATT 58.230 36.000 0.00 0.00 37.68 1.89
2108 2465 8.465273 AGTGCTTTTTCACCTCTAGTATTTTT 57.535 30.769 0.00 0.00 37.68 1.94
2212 2569 0.108138 CGAGGATATTCGGCCATCCC 60.108 60.000 14.70 7.08 41.51 3.85
2239 2596 0.036010 AGGCTGAAGAACCATGGTCG 60.036 55.000 20.07 4.01 0.00 4.79
2243 2600 2.618053 CTGAAGAACCATGGTCGGTAC 58.382 52.381 20.07 9.69 38.76 3.34
2273 2633 9.036671 GTTGCTCTGTTCTATAGAAATTAGTCC 57.963 37.037 16.73 3.68 35.58 3.85
2331 2691 3.119137 GGCAATTAATCTTGTGACACCCC 60.119 47.826 2.45 0.00 0.00 4.95
2486 2846 7.194607 GCATATTGCAGCACTCTTATTAAGA 57.805 36.000 0.00 6.01 44.26 2.10
2575 2937 2.540361 GCACTTGCTGACAACAGTTCAG 60.540 50.000 0.00 0.00 45.04 3.02
2601 2963 1.182667 TGGACCGATAGTGACACTGG 58.817 55.000 18.58 13.07 0.00 4.00
2834 3285 3.069586 TCGCTACATCCTGGAGGTAAATG 59.930 47.826 20.34 13.30 36.34 2.32
2839 3293 4.600062 ACATCCTGGAGGTAAATGAAACC 58.400 43.478 13.05 0.00 37.27 3.27
2849 3303 3.065371 GGTAAATGAAACCGCCTCATCTG 59.935 47.826 0.00 0.00 32.26 2.90
2861 3315 3.242969 CGCCTCATCTGGTTGAATGAATG 60.243 47.826 0.00 0.00 0.00 2.67
2865 3320 6.263842 GCCTCATCTGGTTGAATGAATGAATA 59.736 38.462 0.00 0.00 0.00 1.75
2912 3369 8.271458 AGAAATTTTTCCTTTGTGTAACCCAAT 58.729 29.630 0.00 0.00 37.92 3.16
2959 3416 1.215647 CGTCTCCTTCGACCCCAAG 59.784 63.158 0.00 0.00 0.00 3.61
3000 3460 4.130118 TCTTCTTCTTCTTCTTGTGCCAC 58.870 43.478 0.00 0.00 0.00 5.01
3024 3484 1.079503 GTCACCTTGATCTGCCGTTC 58.920 55.000 0.00 0.00 0.00 3.95
3051 3511 2.936202 CCAGCCAGCCATATGTAACTT 58.064 47.619 1.24 0.00 0.00 2.66
3054 3514 2.689983 AGCCAGCCATATGTAACTTTGC 59.310 45.455 1.24 0.00 0.00 3.68
3078 3538 2.673258 TGTGTGTGACTGTAGGGAGAA 58.327 47.619 0.00 0.00 0.00 2.87
3119 3579 6.469410 CCCACACAAACTACAGGTAAGATAA 58.531 40.000 0.00 0.00 0.00 1.75
3153 3613 2.587194 GATGCATCGCCGTCTGCT 60.587 61.111 11.68 2.42 39.16 4.24
3154 3614 1.300156 GATGCATCGCCGTCTGCTA 60.300 57.895 11.68 3.59 39.16 3.49
3155 3615 0.668706 GATGCATCGCCGTCTGCTAT 60.669 55.000 11.68 7.24 39.16 2.97
3156 3616 0.603065 ATGCATCGCCGTCTGCTATA 59.397 50.000 13.65 0.00 39.16 1.31
3157 3617 0.318699 TGCATCGCCGTCTGCTATAC 60.319 55.000 13.65 0.00 39.16 1.47
3262 3725 1.833630 AGGTGATCAAGAAGGCGATCA 59.166 47.619 0.00 0.00 44.37 2.92
3270 3733 2.307934 AGAAGGCGATCAAGAAGCTC 57.692 50.000 0.00 0.00 0.00 4.09
3375 3838 3.579586 TCAACACCTTCGTATGGGTAAGT 59.420 43.478 0.00 0.00 34.07 2.24
3377 3840 4.996788 ACACCTTCGTATGGGTAAGTAG 57.003 45.455 0.00 0.00 34.07 2.57
3433 3909 1.738350 CACCATTGCTGCTCTTCTCTG 59.262 52.381 0.00 0.00 0.00 3.35
3589 4065 2.413142 CCCTACGTCGTCACCTCCC 61.413 68.421 0.00 0.00 0.00 4.30
3785 4294 6.858104 CATGTAATGTAATGTGCTTGTGTG 57.142 37.500 0.00 0.00 40.20 3.82
3816 4325 1.149148 GTTCCTCGTCCTGAACTTGC 58.851 55.000 0.00 0.00 38.24 4.01
3817 4326 0.034896 TTCCTCGTCCTGAACTTGCC 59.965 55.000 0.00 0.00 0.00 4.52
3854 4363 0.793861 TCGTGTTAAGCGTTCATGGC 59.206 50.000 0.00 0.00 0.00 4.40
3858 4367 0.170339 GTTAAGCGTTCATGGCACCC 59.830 55.000 0.00 0.00 0.00 4.61
3860 4369 0.250945 TAAGCGTTCATGGCACCCAA 60.251 50.000 0.00 0.00 36.95 4.12
3874 4383 2.513753 CACCCAAGTTCATGGCACTTA 58.486 47.619 9.96 0.00 39.26 2.24
3899 4439 0.804364 GGTCTGCATCAATCGTTGCA 59.196 50.000 0.00 0.00 43.80 4.08
3900 4440 1.199789 GGTCTGCATCAATCGTTGCAA 59.800 47.619 0.00 0.00 44.95 4.08
3901 4441 2.159338 GGTCTGCATCAATCGTTGCAAT 60.159 45.455 0.59 0.00 44.95 3.56
3902 4442 2.850060 GTCTGCATCAATCGTTGCAATG 59.150 45.455 12.66 12.66 44.95 2.82
3923 4464 5.637006 TGCATAGGGTAATCAACAACAAC 57.363 39.130 0.00 0.00 0.00 3.32
3924 4465 5.073428 TGCATAGGGTAATCAACAACAACA 58.927 37.500 0.00 0.00 0.00 3.33
3926 4467 5.861787 GCATAGGGTAATCAACAACAACAAC 59.138 40.000 0.00 0.00 0.00 3.32
3960 4519 5.964958 AATCGTTTCAATCTCACATTGGT 57.035 34.783 0.00 0.00 0.00 3.67
3964 4523 6.227522 TCGTTTCAATCTCACATTGGTAAGA 58.772 36.000 0.00 0.00 0.00 2.10
3969 4528 9.748708 TTTCAATCTCACATTGGTAAGAAAAAG 57.251 29.630 0.00 0.00 0.00 2.27
3983 4542 8.262227 TGGTAAGAAAAAGTTGTAGACAGAGAA 58.738 33.333 0.00 0.00 0.00 2.87
3989 4548 9.491934 GAAAAAGTTGTAGACAGAGAAGAAAAC 57.508 33.333 0.00 0.00 0.00 2.43
3990 4549 8.561738 AAAAGTTGTAGACAGAGAAGAAAACA 57.438 30.769 0.00 0.00 0.00 2.83
3998 4557 3.823304 ACAGAGAAGAAAACATCAAGGGC 59.177 43.478 0.00 0.00 0.00 5.19
4001 4560 4.074970 GAGAAGAAAACATCAAGGGCTCA 58.925 43.478 0.00 0.00 0.00 4.26
4007 4566 1.188863 ACATCAAGGGCTCATTTGGC 58.811 50.000 0.00 0.00 0.00 4.52
4015 4574 1.340991 GGGCTCATTTGGCTTACTCCA 60.341 52.381 0.00 0.00 0.00 3.86
4029 4588 6.882140 TGGCTTACTCCAAATTTTCGATAGAA 59.118 34.615 0.00 0.00 43.00 2.10
4066 4634 8.678199 CATAGGGAATTCAAAGGAAAGTAAGAC 58.322 37.037 7.93 0.00 36.43 3.01
4173 5227 7.629157 TGGATGTTCAAGATAAGATTGGTACA 58.371 34.615 0.00 0.00 31.79 2.90
4177 5231 6.811665 TGTTCAAGATAAGATTGGTACACGAG 59.188 38.462 0.00 0.00 39.29 4.18
4179 5233 7.634671 TCAAGATAAGATTGGTACACGAGTA 57.365 36.000 0.00 0.00 39.29 2.59
4292 5359 0.531200 ACCGGCAGCAGAGTAAGTAC 59.469 55.000 0.00 0.00 0.00 2.73
4339 5406 5.125257 TGGCACATACATTTATTCAGGTGTG 59.875 40.000 0.00 0.00 38.86 3.82
4353 5422 3.515502 TCAGGTGTGAAGGGAGATGTAAG 59.484 47.826 0.00 0.00 0.00 2.34
4381 5450 2.787473 ATCGAACATGAGGCCAGAAA 57.213 45.000 5.01 0.00 0.00 2.52
4435 5504 8.196802 TCTAGGTCAAAATTTATGTGATCACG 57.803 34.615 20.54 3.50 0.00 4.35
4540 5610 2.036992 TGCATCCTCGCCAAAATGTTTT 59.963 40.909 0.00 0.00 0.00 2.43
4580 5667 2.501723 TGAGGAGTTGGATCTTACCAGC 59.498 50.000 0.00 0.00 41.19 4.85
4583 5670 0.541863 AGTTGGATCTTACCAGCGGG 59.458 55.000 0.00 0.00 44.01 6.13
4595 5682 1.078214 CAGCGGGGAAAGAGCATCA 60.078 57.895 0.00 0.00 37.82 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.308207 GGCCAAAGTCCACTTAAACATAATTAA 58.692 33.333 0.00 0.00 34.61 1.40
1 2 7.362229 CGGCCAAAGTCCACTTAAACATAATTA 60.362 37.037 2.24 0.00 34.61 1.40
2 3 6.571537 CGGCCAAAGTCCACTTAAACATAATT 60.572 38.462 2.24 0.00 34.61 1.40
3 4 5.105917 CGGCCAAAGTCCACTTAAACATAAT 60.106 40.000 2.24 0.00 34.61 1.28
4 5 4.216687 CGGCCAAAGTCCACTTAAACATAA 59.783 41.667 2.24 0.00 34.61 1.90
5 6 3.754323 CGGCCAAAGTCCACTTAAACATA 59.246 43.478 2.24 0.00 34.61 2.29
6 7 2.556622 CGGCCAAAGTCCACTTAAACAT 59.443 45.455 2.24 0.00 34.61 2.71
7 8 1.950909 CGGCCAAAGTCCACTTAAACA 59.049 47.619 2.24 0.00 34.61 2.83
8 9 1.268625 CCGGCCAAAGTCCACTTAAAC 59.731 52.381 2.24 0.00 34.61 2.01
9 10 1.611519 CCGGCCAAAGTCCACTTAAA 58.388 50.000 2.24 0.00 34.61 1.52
10 11 0.891904 GCCGGCCAAAGTCCACTTAA 60.892 55.000 18.11 0.00 34.61 1.85
11 12 1.302993 GCCGGCCAAAGTCCACTTA 60.303 57.895 18.11 0.00 34.61 2.24
12 13 2.597510 GCCGGCCAAAGTCCACTT 60.598 61.111 18.11 0.00 37.91 3.16
28 29 1.303091 AAACATAAGTGGCCGGTCGC 61.303 55.000 12.84 12.84 0.00 5.19
29 30 1.161843 AAAACATAAGTGGCCGGTCG 58.838 50.000 0.00 0.00 0.00 4.79
30 31 4.976224 AATAAAACATAAGTGGCCGGTC 57.024 40.909 0.00 0.00 0.00 4.79
31 32 5.889289 ACATAATAAAACATAAGTGGCCGGT 59.111 36.000 1.90 0.00 0.00 5.28
32 33 6.385649 ACATAATAAAACATAAGTGGCCGG 57.614 37.500 0.00 0.00 0.00 6.13
33 34 9.959749 ATAAACATAATAAAACATAAGTGGCCG 57.040 29.630 0.00 0.00 0.00 6.13
56 57 9.464714 TGCTTGCACGAAATAAACTTAAAATAA 57.535 25.926 0.00 0.00 0.00 1.40
57 58 9.632807 ATGCTTGCACGAAATAAACTTAAAATA 57.367 25.926 0.00 0.00 0.00 1.40
58 59 7.938563 TGCTTGCACGAAATAAACTTAAAAT 57.061 28.000 0.00 0.00 0.00 1.82
59 60 7.938563 ATGCTTGCACGAAATAAACTTAAAA 57.061 28.000 0.00 0.00 0.00 1.52
60 61 9.632807 AATATGCTTGCACGAAATAAACTTAAA 57.367 25.926 0.00 0.00 0.00 1.52
61 62 9.632807 AAATATGCTTGCACGAAATAAACTTAA 57.367 25.926 0.00 0.00 0.00 1.85
62 63 9.632807 AAAATATGCTTGCACGAAATAAACTTA 57.367 25.926 0.00 0.00 0.00 2.24
63 64 8.532977 AAAATATGCTTGCACGAAATAAACTT 57.467 26.923 0.00 0.00 0.00 2.66
64 65 8.532977 AAAAATATGCTTGCACGAAATAAACT 57.467 26.923 0.00 0.00 0.00 2.66
97 98 2.184836 CCAAATGTGCCGGCATGG 59.815 61.111 35.23 30.83 42.50 3.66
98 99 2.184836 CCCAAATGTGCCGGCATG 59.815 61.111 35.23 25.99 0.00 4.06
99 100 2.283821 ACCCAAATGTGCCGGCAT 60.284 55.556 35.23 16.02 0.00 4.40
100 101 2.988684 GACCCAAATGTGCCGGCA 60.989 61.111 29.03 29.03 0.00 5.69
101 102 2.676471 AGACCCAAATGTGCCGGC 60.676 61.111 22.73 22.73 0.00 6.13
102 103 2.993471 GCAGACCCAAATGTGCCGG 61.993 63.158 0.00 0.00 32.84 6.13
103 104 2.568090 GCAGACCCAAATGTGCCG 59.432 61.111 0.00 0.00 32.84 5.69
105 106 1.598701 GGAGGCAGACCCAAATGTGC 61.599 60.000 0.00 0.00 38.12 4.57
106 107 0.967380 GGGAGGCAGACCCAAATGTG 60.967 60.000 9.05 0.00 46.05 3.21
107 108 1.384191 GGGAGGCAGACCCAAATGT 59.616 57.895 9.05 0.00 46.05 2.71
108 109 4.344237 GGGAGGCAGACCCAAATG 57.656 61.111 9.05 0.00 46.05 2.32
113 114 4.410400 CAACGGGGAGGCAGACCC 62.410 72.222 5.98 5.98 46.05 4.46
114 115 4.410400 CCAACGGGGAGGCAGACC 62.410 72.222 0.00 0.00 40.01 3.85
115 116 3.319198 TCCAACGGGGAGGCAGAC 61.319 66.667 0.00 0.00 42.15 3.51
123 124 2.046285 GCTTGACCATCCAACGGGG 61.046 63.158 0.00 0.00 38.37 5.73
124 125 2.046285 GGCTTGACCATCCAACGGG 61.046 63.158 0.00 0.00 38.86 5.28
125 126 2.398554 CGGCTTGACCATCCAACGG 61.399 63.158 0.00 0.00 39.03 4.44
126 127 1.375396 TCGGCTTGACCATCCAACG 60.375 57.895 0.00 0.00 39.03 4.10
127 128 2.171635 GTCGGCTTGACCATCCAAC 58.828 57.895 0.00 0.00 42.04 3.77
128 129 4.713946 GTCGGCTTGACCATCCAA 57.286 55.556 0.00 0.00 42.04 3.53
136 137 2.570415 TGTAAAATGGGTCGGCTTGA 57.430 45.000 0.00 0.00 0.00 3.02
137 138 3.866883 ATTGTAAAATGGGTCGGCTTG 57.133 42.857 0.00 0.00 0.00 4.01
138 139 3.375922 CGTATTGTAAAATGGGTCGGCTT 59.624 43.478 0.00 0.00 0.00 4.35
139 140 2.940410 CGTATTGTAAAATGGGTCGGCT 59.060 45.455 0.00 0.00 0.00 5.52
140 141 2.032426 CCGTATTGTAAAATGGGTCGGC 59.968 50.000 0.00 0.00 0.00 5.54
141 142 3.310501 GTCCGTATTGTAAAATGGGTCGG 59.689 47.826 0.00 0.00 37.29 4.79
142 143 3.000523 CGTCCGTATTGTAAAATGGGTCG 59.999 47.826 3.95 3.95 0.00 4.79
143 144 3.242511 GCGTCCGTATTGTAAAATGGGTC 60.243 47.826 0.00 0.00 0.00 4.46
144 145 2.679336 GCGTCCGTATTGTAAAATGGGT 59.321 45.455 0.00 0.00 0.00 4.51
145 146 2.285950 CGCGTCCGTATTGTAAAATGGG 60.286 50.000 0.00 0.00 0.00 4.00
146 147 2.848002 GCGCGTCCGTATTGTAAAATGG 60.848 50.000 8.43 0.00 36.67 3.16
147 148 2.222841 TGCGCGTCCGTATTGTAAAATG 60.223 45.455 8.43 0.00 36.67 2.32
148 149 2.001159 TGCGCGTCCGTATTGTAAAAT 58.999 42.857 8.43 0.00 36.67 1.82
149 150 1.126479 GTGCGCGTCCGTATTGTAAAA 59.874 47.619 8.43 0.00 36.67 1.52
150 151 0.714994 GTGCGCGTCCGTATTGTAAA 59.285 50.000 8.43 0.00 36.67 2.01
151 152 1.404720 CGTGCGCGTCCGTATTGTAA 61.405 55.000 12.43 0.00 36.67 2.41
152 153 1.868692 CGTGCGCGTCCGTATTGTA 60.869 57.895 12.43 0.00 36.67 2.41
153 154 3.176578 CGTGCGCGTCCGTATTGT 61.177 61.111 12.43 0.00 36.67 2.71
170 171 1.161563 TCCGTTTTTGTCAGGCGGAC 61.162 55.000 11.02 11.02 45.26 4.79
171 172 3.739167 CCGTTTTTGTCAGGCGGA 58.261 55.556 0.00 0.00 44.57 5.54
172 173 1.281656 GTCCGTTTTTGTCAGGCGG 59.718 57.895 0.00 0.00 43.32 6.13
173 174 0.378962 TTGTCCGTTTTTGTCAGGCG 59.621 50.000 0.00 0.00 0.00 5.52
174 175 2.570442 TTTGTCCGTTTTTGTCAGGC 57.430 45.000 0.00 0.00 0.00 4.85
175 176 2.849473 CGTTTTGTCCGTTTTTGTCAGG 59.151 45.455 0.00 0.00 0.00 3.86
176 177 2.277834 GCGTTTTGTCCGTTTTTGTCAG 59.722 45.455 0.00 0.00 0.00 3.51
177 178 2.251893 GCGTTTTGTCCGTTTTTGTCA 58.748 42.857 0.00 0.00 0.00 3.58
178 179 1.250749 CGCGTTTTGTCCGTTTTTGTC 59.749 47.619 0.00 0.00 0.00 3.18
179 180 1.261097 CGCGTTTTGTCCGTTTTTGT 58.739 45.000 0.00 0.00 0.00 2.83
180 181 1.007933 CACGCGTTTTGTCCGTTTTTG 60.008 47.619 10.22 0.00 32.18 2.44
181 182 1.261097 CACGCGTTTTGTCCGTTTTT 58.739 45.000 10.22 0.00 32.18 1.94
182 183 1.135114 GCACGCGTTTTGTCCGTTTT 61.135 50.000 10.22 0.00 32.18 2.43
183 184 1.584225 GCACGCGTTTTGTCCGTTT 60.584 52.632 10.22 0.00 32.18 3.60
184 185 2.023601 GCACGCGTTTTGTCCGTT 59.976 55.556 10.22 0.00 32.18 4.44
185 186 2.893404 AGCACGCGTTTTGTCCGT 60.893 55.556 10.22 0.00 35.29 4.69
186 187 2.425124 CAGCACGCGTTTTGTCCG 60.425 61.111 10.22 0.00 0.00 4.79
187 188 2.051345 CCAGCACGCGTTTTGTCC 60.051 61.111 10.22 0.00 0.00 4.02
188 189 0.524604 AAACCAGCACGCGTTTTGTC 60.525 50.000 10.22 0.00 0.00 3.18
189 190 0.800300 CAAACCAGCACGCGTTTTGT 60.800 50.000 19.97 9.30 29.85 2.83
190 191 1.478622 CCAAACCAGCACGCGTTTTG 61.479 55.000 20.86 20.86 29.85 2.44
191 192 1.226831 CCAAACCAGCACGCGTTTT 60.227 52.632 10.22 4.14 29.85 2.43
192 193 2.411290 CCAAACCAGCACGCGTTT 59.589 55.556 10.22 0.00 32.48 3.60
193 194 3.591835 CCCAAACCAGCACGCGTT 61.592 61.111 10.22 0.00 0.00 4.84
194 195 4.868116 ACCCAAACCAGCACGCGT 62.868 61.111 5.58 5.58 0.00 6.01
195 196 4.025401 GACCCAAACCAGCACGCG 62.025 66.667 3.53 3.53 0.00 6.01
196 197 4.025401 CGACCCAAACCAGCACGC 62.025 66.667 0.00 0.00 0.00 5.34
197 198 4.025401 GCGACCCAAACCAGCACG 62.025 66.667 0.00 0.00 0.00 5.34
198 199 3.670377 GGCGACCCAAACCAGCAC 61.670 66.667 0.00 0.00 0.00 4.40
210 211 3.047877 CAACTCCAACGGGGCGAC 61.048 66.667 0.00 0.00 36.21 5.19
213 214 2.180159 TAGAGCAACTCCAACGGGGC 62.180 60.000 0.00 0.00 36.21 5.80
214 215 0.323629 TTAGAGCAACTCCAACGGGG 59.676 55.000 0.00 0.00 38.37 5.73
215 216 1.439679 GTTAGAGCAACTCCAACGGG 58.560 55.000 0.00 0.00 34.06 5.28
216 217 1.068474 CGTTAGAGCAACTCCAACGG 58.932 55.000 16.90 3.10 46.08 4.44
218 219 3.326747 ACATCGTTAGAGCAACTCCAAC 58.673 45.455 0.00 0.00 34.77 3.77
219 220 3.006430 TGACATCGTTAGAGCAACTCCAA 59.994 43.478 0.00 0.00 34.77 3.53
220 221 2.560981 TGACATCGTTAGAGCAACTCCA 59.439 45.455 0.00 0.00 34.77 3.86
221 222 2.924290 GTGACATCGTTAGAGCAACTCC 59.076 50.000 0.00 0.00 34.77 3.85
222 223 2.594654 CGTGACATCGTTAGAGCAACTC 59.405 50.000 0.00 0.00 34.77 3.01
223 224 2.228103 TCGTGACATCGTTAGAGCAACT 59.772 45.455 0.00 0.00 34.77 3.16
224 225 2.592194 TCGTGACATCGTTAGAGCAAC 58.408 47.619 0.00 0.00 0.00 4.17
225 226 2.415491 CCTCGTGACATCGTTAGAGCAA 60.415 50.000 0.00 0.00 0.00 3.91
226 227 1.132453 CCTCGTGACATCGTTAGAGCA 59.868 52.381 0.00 0.00 0.00 4.26
227 228 1.534175 CCCTCGTGACATCGTTAGAGC 60.534 57.143 0.00 0.00 0.00 4.09
228 229 1.065701 CCCCTCGTGACATCGTTAGAG 59.934 57.143 0.00 0.00 0.00 2.43
229 230 1.100510 CCCCTCGTGACATCGTTAGA 58.899 55.000 0.00 0.00 0.00 2.10
230 231 0.102481 CCCCCTCGTGACATCGTTAG 59.898 60.000 0.00 0.00 0.00 2.34
239 240 2.348104 CGTGTCATCCCCCTCGTGA 61.348 63.158 0.00 0.00 0.00 4.35
246 247 2.125106 GCCTGTCGTGTCATCCCC 60.125 66.667 0.00 0.00 0.00 4.81
249 250 0.512952 GTTGTGCCTGTCGTGTCATC 59.487 55.000 0.00 0.00 0.00 2.92
268 269 2.810274 ACATGTGTGAGCAGCTAAGTTG 59.190 45.455 0.00 0.00 0.00 3.16
270 271 2.613977 GGACATGTGTGAGCAGCTAAGT 60.614 50.000 1.15 0.00 0.00 2.24
271 272 2.005451 GGACATGTGTGAGCAGCTAAG 58.995 52.381 1.15 0.00 0.00 2.18
272 273 1.339055 GGGACATGTGTGAGCAGCTAA 60.339 52.381 1.15 0.00 0.00 3.09
278 279 0.320771 ACTTCGGGACATGTGTGAGC 60.321 55.000 1.15 0.00 0.00 4.26
283 284 1.339055 ACCATGACTTCGGGACATGTG 60.339 52.381 1.15 0.00 39.47 3.21
284 285 0.984230 ACCATGACTTCGGGACATGT 59.016 50.000 0.00 0.00 39.47 3.21
285 286 2.113860 AACCATGACTTCGGGACATG 57.886 50.000 0.00 11.91 40.39 3.21
286 287 3.992943 TTAACCATGACTTCGGGACAT 57.007 42.857 0.00 0.00 0.00 3.06
287 288 3.773418 TTTAACCATGACTTCGGGACA 57.227 42.857 0.00 0.00 0.00 4.02
289 290 4.082463 GCAAATTTAACCATGACTTCGGGA 60.082 41.667 0.00 0.00 0.00 5.14
290 291 4.082245 AGCAAATTTAACCATGACTTCGGG 60.082 41.667 0.00 0.00 0.00 5.14
291 292 5.059404 AGCAAATTTAACCATGACTTCGG 57.941 39.130 0.00 0.00 0.00 4.30
304 315 4.094294 GTGACCATCGCAGTAGCAAATTTA 59.906 41.667 0.00 0.00 42.27 1.40
306 317 2.420022 GTGACCATCGCAGTAGCAAATT 59.580 45.455 0.00 0.00 42.27 1.82
356 369 1.065854 AGCCACACCTGCAAGATACTC 60.066 52.381 0.00 0.00 34.07 2.59
357 370 0.987294 AGCCACACCTGCAAGATACT 59.013 50.000 0.00 0.00 34.07 2.12
358 371 1.339055 TGAGCCACACCTGCAAGATAC 60.339 52.381 0.00 0.00 34.07 2.24
359 372 0.983467 TGAGCCACACCTGCAAGATA 59.017 50.000 0.00 0.00 34.07 1.98
360 373 0.607489 GTGAGCCACACCTGCAAGAT 60.607 55.000 0.00 0.00 43.05 2.40
373 386 0.244994 ACATGAGTGAGACGTGAGCC 59.755 55.000 0.00 0.00 0.00 4.70
374 387 1.068264 TGACATGAGTGAGACGTGAGC 60.068 52.381 0.00 0.00 0.00 4.26
397 410 1.473434 CCCGATGGGTCAAAGCTAGAC 60.473 57.143 10.02 10.02 38.25 2.59
418 431 1.332195 CCTGTGGACTGACTGACTGA 58.668 55.000 0.00 0.00 0.00 3.41
419 432 0.319728 CCCTGTGGACTGACTGACTG 59.680 60.000 0.00 0.00 0.00 3.51
420 433 0.188587 TCCCTGTGGACTGACTGACT 59.811 55.000 0.00 0.00 35.03 3.41
534 561 2.873649 GCTATGGCTATGGCTGACTTCC 60.874 54.545 11.26 0.00 37.75 3.46
535 562 2.421619 GCTATGGCTATGGCTGACTTC 58.578 52.381 11.26 0.00 37.75 3.01
536 563 1.072965 GGCTATGGCTATGGCTGACTT 59.927 52.381 17.60 0.00 40.33 3.01
537 564 0.689623 GGCTATGGCTATGGCTGACT 59.310 55.000 17.60 0.00 40.33 3.41
539 566 1.139439 TTGGCTATGGCTATGGCTGA 58.861 50.000 17.60 4.48 40.33 4.26
540 567 2.211250 ATTGGCTATGGCTATGGCTG 57.789 50.000 17.60 0.00 40.33 4.85
541 568 2.986534 AATTGGCTATGGCTATGGCT 57.013 45.000 17.60 0.00 40.33 4.75
542 569 3.160269 AGAAATTGGCTATGGCTATGGC 58.840 45.455 10.06 10.06 39.80 4.40
543 570 3.760684 GGAGAAATTGGCTATGGCTATGG 59.239 47.826 0.00 0.00 38.73 2.74
544 571 4.660168 AGGAGAAATTGGCTATGGCTATG 58.340 43.478 0.00 0.00 38.73 2.23
545 572 5.320277 GAAGGAGAAATTGGCTATGGCTAT 58.680 41.667 0.00 0.00 38.73 2.97
579 606 1.250328 CCTGCTGAAAGTGCCATTCA 58.750 50.000 0.00 0.00 35.30 2.57
585 612 0.038801 GAAAGCCCTGCTGAAAGTGC 60.039 55.000 0.00 0.00 39.62 4.40
592 619 9.651913 TTAATTAAAATTAAGAAAGCCCTGCTG 57.348 29.630 4.20 0.00 36.19 4.41
609 636 9.023962 ACATCAGGAGCACTTCATTAATTAAAA 57.976 29.630 1.21 0.00 0.00 1.52
610 637 8.461222 CACATCAGGAGCACTTCATTAATTAAA 58.539 33.333 1.21 0.00 0.00 1.52
611 638 7.067372 CCACATCAGGAGCACTTCATTAATTAA 59.933 37.037 0.00 0.00 0.00 1.40
612 639 6.543465 CCACATCAGGAGCACTTCATTAATTA 59.457 38.462 0.00 0.00 0.00 1.40
614 641 4.885907 CCACATCAGGAGCACTTCATTAAT 59.114 41.667 0.00 0.00 0.00 1.40
615 642 4.263462 ACCACATCAGGAGCACTTCATTAA 60.263 41.667 0.00 0.00 0.00 1.40
616 643 3.264193 ACCACATCAGGAGCACTTCATTA 59.736 43.478 0.00 0.00 0.00 1.90
619 646 1.059098 ACCACATCAGGAGCACTTCA 58.941 50.000 0.00 0.00 0.00 3.02
620 647 1.271054 ACACCACATCAGGAGCACTTC 60.271 52.381 0.00 0.00 0.00 3.01
621 648 0.767375 ACACCACATCAGGAGCACTT 59.233 50.000 0.00 0.00 0.00 3.16
622 649 0.035881 CACACCACATCAGGAGCACT 59.964 55.000 0.00 0.00 0.00 4.40
623 650 1.580845 GCACACCACATCAGGAGCAC 61.581 60.000 0.00 0.00 0.00 4.40
624 651 1.302752 GCACACCACATCAGGAGCA 60.303 57.895 0.00 0.00 0.00 4.26
626 653 1.742880 CCGCACACCACATCAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
627 654 1.552799 ATCCGCACACCACATCAGGA 61.553 55.000 0.00 0.00 0.00 3.86
628 655 1.078214 ATCCGCACACCACATCAGG 60.078 57.895 0.00 0.00 0.00 3.86
629 656 0.391528 TGATCCGCACACCACATCAG 60.392 55.000 0.00 0.00 0.00 2.90
630 657 0.391528 CTGATCCGCACACCACATCA 60.392 55.000 0.00 0.00 0.00 3.07
631 658 1.709147 GCTGATCCGCACACCACATC 61.709 60.000 4.00 0.00 0.00 3.06
632 659 1.746615 GCTGATCCGCACACCACAT 60.747 57.895 4.00 0.00 0.00 3.21
633 660 2.358615 GCTGATCCGCACACCACA 60.359 61.111 4.00 0.00 0.00 4.17
676 708 0.169672 CTGTACCAGTACACGGGACG 59.830 60.000 6.55 4.03 45.54 4.79
677 709 1.251251 ACTGTACCAGTACACGGGAC 58.749 55.000 6.55 9.31 43.46 4.46
680 712 4.771590 TTTCTACTGTACCAGTACACGG 57.228 45.455 6.55 1.65 43.46 4.94
681 713 5.159209 CCTTTTCTACTGTACCAGTACACG 58.841 45.833 6.55 6.28 43.46 4.49
682 714 5.924825 CACCTTTTCTACTGTACCAGTACAC 59.075 44.000 6.55 0.00 43.46 2.90
684 716 6.094193 ACACCTTTTCTACTGTACCAGTAC 57.906 41.667 0.86 0.86 43.46 2.73
685 717 6.239402 GGAACACCTTTTCTACTGTACCAGTA 60.239 42.308 4.22 4.22 43.46 2.74
687 719 4.995487 GGAACACCTTTTCTACTGTACCAG 59.005 45.833 0.00 0.00 37.52 4.00
689 721 3.992427 CGGAACACCTTTTCTACTGTACC 59.008 47.826 0.00 0.00 0.00 3.34
880 948 1.750399 CTGGGAAATGCGGGACAGG 60.750 63.158 0.00 0.00 0.00 4.00
896 964 2.012673 GTGGCAAATGGTAGCTCTCTG 58.987 52.381 0.00 0.00 0.00 3.35
900 968 2.985896 TGTAGTGGCAAATGGTAGCTC 58.014 47.619 0.00 0.00 0.00 4.09
901 969 3.081804 GTTGTAGTGGCAAATGGTAGCT 58.918 45.455 0.00 0.00 0.00 3.32
902 970 2.817258 TGTTGTAGTGGCAAATGGTAGC 59.183 45.455 0.00 0.00 0.00 3.58
903 971 3.190535 GGTGTTGTAGTGGCAAATGGTAG 59.809 47.826 0.00 0.00 0.00 3.18
904 972 3.150767 GGTGTTGTAGTGGCAAATGGTA 58.849 45.455 0.00 0.00 0.00 3.25
905 973 1.960689 GGTGTTGTAGTGGCAAATGGT 59.039 47.619 0.00 0.00 0.00 3.55
906 974 2.228822 GAGGTGTTGTAGTGGCAAATGG 59.771 50.000 0.00 0.00 0.00 3.16
907 975 3.149196 AGAGGTGTTGTAGTGGCAAATG 58.851 45.455 0.00 0.00 0.00 2.32
908 976 3.412386 GAGAGGTGTTGTAGTGGCAAAT 58.588 45.455 0.00 0.00 0.00 2.32
909 977 2.486548 GGAGAGGTGTTGTAGTGGCAAA 60.487 50.000 0.00 0.00 0.00 3.68
910 978 1.071699 GGAGAGGTGTTGTAGTGGCAA 59.928 52.381 0.00 0.00 0.00 4.52
911 979 0.685097 GGAGAGGTGTTGTAGTGGCA 59.315 55.000 0.00 0.00 0.00 4.92
912 980 0.036294 GGGAGAGGTGTTGTAGTGGC 60.036 60.000 0.00 0.00 0.00 5.01
913 981 1.550976 GAGGGAGAGGTGTTGTAGTGG 59.449 57.143 0.00 0.00 0.00 4.00
914 982 2.494073 GAGAGGGAGAGGTGTTGTAGTG 59.506 54.545 0.00 0.00 0.00 2.74
915 983 2.557901 GGAGAGGGAGAGGTGTTGTAGT 60.558 54.545 0.00 0.00 0.00 2.73
916 984 2.104170 GGAGAGGGAGAGGTGTTGTAG 58.896 57.143 0.00 0.00 0.00 2.74
917 985 1.273098 GGGAGAGGGAGAGGTGTTGTA 60.273 57.143 0.00 0.00 0.00 2.41
918 986 0.545548 GGGAGAGGGAGAGGTGTTGT 60.546 60.000 0.00 0.00 0.00 3.32
919 987 0.252467 AGGGAGAGGGAGAGGTGTTG 60.252 60.000 0.00 0.00 0.00 3.33
920 988 0.041982 GAGGGAGAGGGAGAGGTGTT 59.958 60.000 0.00 0.00 0.00 3.32
934 1002 0.856982 GAGATGGAGAGGGAGAGGGA 59.143 60.000 0.00 0.00 0.00 4.20
943 1021 0.178975 AGCCTACCGGAGATGGAGAG 60.179 60.000 9.46 0.00 0.00 3.20
957 1035 1.382695 CTTCTTCCCCCGGAGCCTA 60.383 63.158 0.73 0.00 31.21 3.93
958 1036 2.689034 CTTCTTCCCCCGGAGCCT 60.689 66.667 0.73 0.00 31.21 4.58
959 1037 2.258748 CTTCTTCTTCCCCCGGAGCC 62.259 65.000 0.73 0.00 31.21 4.70
960 1038 1.222113 CTTCTTCTTCCCCCGGAGC 59.778 63.158 0.73 0.00 31.21 4.70
961 1039 1.066071 GTTCTTCTTCTTCCCCCGGAG 60.066 57.143 0.73 0.00 31.21 4.63
962 1040 0.981943 GTTCTTCTTCTTCCCCCGGA 59.018 55.000 0.73 0.00 0.00 5.14
991 1072 2.969238 CGGAGACATGGCGGATGC 60.969 66.667 0.00 0.00 41.71 3.91
992 1073 2.969238 GCGGAGACATGGCGGATG 60.969 66.667 0.00 0.00 38.15 3.51
993 1074 3.157217 GAGCGGAGACATGGCGGAT 62.157 63.158 0.00 0.00 0.00 4.18
994 1075 3.838271 GAGCGGAGACATGGCGGA 61.838 66.667 0.00 0.00 0.00 5.54
1086 1176 1.556911 GTGCTGAGGAAGATGGAGGAA 59.443 52.381 0.00 0.00 0.00 3.36
1093 1183 0.908198 GGGACAGTGCTGAGGAAGAT 59.092 55.000 6.17 0.00 0.00 2.40
1209 1395 8.094798 TCAAAATTTGAGAAACGCACTAGTAT 57.905 30.769 4.03 0.00 34.08 2.12
1232 1491 2.445525 AGAAGGGTTTTTACTGGGCTCA 59.554 45.455 0.00 0.00 0.00 4.26
1255 1514 5.738783 GCAACAGATCAAGGCCTAAAAACAA 60.739 40.000 5.16 0.00 0.00 2.83
1257 1516 4.237724 GCAACAGATCAAGGCCTAAAAAC 58.762 43.478 5.16 0.00 0.00 2.43
1264 1528 4.421365 TGGCAACAGATCAAGGCC 57.579 55.556 0.00 0.00 46.17 5.19
1302 1582 5.423015 TGCACATAGCCAAACAAAGAAAAA 58.577 33.333 0.00 0.00 44.83 1.94
1306 1586 4.081406 AGATGCACATAGCCAAACAAAGA 58.919 39.130 0.00 0.00 44.83 2.52
1307 1587 4.445452 AGATGCACATAGCCAAACAAAG 57.555 40.909 0.00 0.00 44.83 2.77
1309 1589 3.056678 CCAAGATGCACATAGCCAAACAA 60.057 43.478 0.00 0.00 44.83 2.83
1310 1590 2.492881 CCAAGATGCACATAGCCAAACA 59.507 45.455 0.00 0.00 44.83 2.83
1338 1620 0.250901 ACCAGCAACACCTAGCCAAG 60.251 55.000 0.00 0.00 0.00 3.61
1344 1626 3.719268 AATCATGACCAGCAACACCTA 57.281 42.857 0.00 0.00 0.00 3.08
1345 1627 2.559668 CAAATCATGACCAGCAACACCT 59.440 45.455 0.00 0.00 0.00 4.00
1350 1632 4.096833 GCAGATACAAATCATGACCAGCAA 59.903 41.667 0.00 0.00 34.28 3.91
1351 1633 3.628942 GCAGATACAAATCATGACCAGCA 59.371 43.478 0.00 0.00 34.28 4.41
1355 1637 6.570672 ATCATGCAGATACAAATCATGACC 57.429 37.500 0.00 0.00 43.99 4.02
1409 1692 8.463930 TCAAAGATCATTTAGACCAAAACACT 57.536 30.769 0.00 0.00 0.00 3.55
1410 1693 9.346725 GATCAAAGATCATTTAGACCAAAACAC 57.653 33.333 0.00 0.00 0.00 3.32
1411 1694 9.300681 AGATCAAAGATCATTTAGACCAAAACA 57.699 29.630 9.43 0.00 0.00 2.83
1416 1699 9.098355 CGTTTAGATCAAAGATCATTTAGACCA 57.902 33.333 9.43 0.00 0.00 4.02
1417 1700 8.064814 GCGTTTAGATCAAAGATCATTTAGACC 58.935 37.037 9.43 0.00 0.00 3.85
1418 1701 8.821894 AGCGTTTAGATCAAAGATCATTTAGAC 58.178 33.333 9.43 0.00 0.00 2.59
1419 1702 8.948631 AGCGTTTAGATCAAAGATCATTTAGA 57.051 30.769 9.43 0.00 0.00 2.10
1420 1703 9.994432 AAAGCGTTTAGATCAAAGATCATTTAG 57.006 29.630 9.43 0.20 0.00 1.85
1436 1719 9.511144 CCCCTACAAAAATATAAAAGCGTTTAG 57.489 33.333 10.55 0.00 32.76 1.85
1437 1720 8.468399 CCCCCTACAAAAATATAAAAGCGTTTA 58.532 33.333 7.30 7.30 33.76 2.01
1438 1721 7.324935 CCCCCTACAAAAATATAAAAGCGTTT 58.675 34.615 2.53 2.53 0.00 3.60
1439 1722 6.869695 CCCCCTACAAAAATATAAAAGCGTT 58.130 36.000 0.00 0.00 0.00 4.84
1461 1744 0.029989 AATGTACTCCCTCCCTCCCC 60.030 60.000 0.00 0.00 0.00 4.81
1462 1745 2.789323 TAATGTACTCCCTCCCTCCC 57.211 55.000 0.00 0.00 0.00 4.30
1463 1746 5.404395 ACTTATAATGTACTCCCTCCCTCC 58.596 45.833 0.00 0.00 0.00 4.30
1464 1747 6.997942 AACTTATAATGTACTCCCTCCCTC 57.002 41.667 0.00 0.00 0.00 4.30
1494 1777 0.542333 TACGATGCCGATTTCCCCAA 59.458 50.000 0.00 0.00 39.50 4.12
1499 1782 4.904154 GCATAAAAGTACGATGCCGATTTC 59.096 41.667 11.66 0.00 40.08 2.17
1520 1803 7.685849 ATGGAAGTAGGTTAGTAATAAGGCA 57.314 36.000 0.00 0.00 0.00 4.75
1577 1865 2.187946 CTCCTGACGTCCATGCCC 59.812 66.667 14.12 0.00 0.00 5.36
1580 1868 1.081892 CTTTGCTCCTGACGTCCATG 58.918 55.000 14.12 3.19 0.00 3.66
1618 1910 2.334838 GGCAAAGTAATGAGTCGTCGT 58.665 47.619 0.00 0.00 0.00 4.34
1679 1976 7.011763 CACAGGAAGTGTTAGGAACATATCATG 59.988 40.741 14.75 14.75 44.35 3.07
1701 1998 1.915141 AGGCATCAAAAGGGTCACAG 58.085 50.000 0.00 0.00 0.00 3.66
1755 2053 1.300963 GAGCTTGCTGGGGTCATCA 59.699 57.895 0.00 0.00 0.00 3.07
1773 2071 2.874849 CCGTCGAAATTCCATTTTGGG 58.125 47.619 0.00 0.00 38.32 4.12
1818 2116 1.583967 GATGACCTCGCTGTCGTCG 60.584 63.158 9.60 0.00 40.39 5.12
1860 2158 4.508551 AGGCATGATGGTTATGTGAAGA 57.491 40.909 0.00 0.00 0.00 2.87
1866 2164 2.313317 AGCCAAGGCATGATGGTTATG 58.687 47.619 14.40 0.00 44.88 1.90
1867 2165 2.696707 CAAGCCAAGGCATGATGGTTAT 59.303 45.455 14.40 0.18 41.68 1.89
1873 2171 1.679977 ACGCAAGCCAAGGCATGAT 60.680 52.632 19.43 4.31 41.68 2.45
1874 2172 2.282391 ACGCAAGCCAAGGCATGA 60.282 55.556 19.43 0.00 41.68 3.07
1924 2222 3.066814 GGGCTTGGCAGGAGCAAG 61.067 66.667 12.83 0.00 44.61 4.01
1991 2289 9.163894 ACAAGGAGGATCTTGATCATTCTTATA 57.836 33.333 15.65 0.00 44.98 0.98
1992 2290 8.043429 ACAAGGAGGATCTTGATCATTCTTAT 57.957 34.615 15.65 5.17 44.98 1.73
1993 2291 7.443302 ACAAGGAGGATCTTGATCATTCTTA 57.557 36.000 15.65 0.00 44.98 2.10
1994 2292 6.324601 ACAAGGAGGATCTTGATCATTCTT 57.675 37.500 11.66 11.66 44.98 2.52
2030 2332 9.187455 ACACAAATAAACAATAACACGAAATCC 57.813 29.630 0.00 0.00 0.00 3.01
2073 2430 4.504097 GGTGAAAAAGCACTCATGAACAAC 59.496 41.667 0.00 0.00 38.78 3.32
2108 2465 2.096318 CCTAAACGCGCGAGGTTAAAAA 60.096 45.455 39.36 10.74 0.00 1.94
2113 2470 1.735559 GACCTAAACGCGCGAGGTT 60.736 57.895 33.58 25.98 43.78 3.50
2115 2472 1.480219 GATGACCTAAACGCGCGAGG 61.480 60.000 39.36 33.00 36.36 4.63
2117 2474 0.800683 CAGATGACCTAAACGCGCGA 60.801 55.000 39.36 14.09 0.00 5.87
2118 2475 1.076533 ACAGATGACCTAAACGCGCG 61.077 55.000 30.96 30.96 0.00 6.86
2119 2476 0.370273 CACAGATGACCTAAACGCGC 59.630 55.000 5.73 0.00 0.00 6.86
2120 2477 1.990799 TCACAGATGACCTAAACGCG 58.009 50.000 3.53 3.53 0.00 6.01
2212 2569 1.433534 GTTCTTCAGCCTTGACCTCG 58.566 55.000 0.00 0.00 31.71 4.63
2215 2572 1.815003 CATGGTTCTTCAGCCTTGACC 59.185 52.381 0.00 0.00 33.35 4.02
2304 2664 5.574055 GTGTCACAAGATTAATTGCCACATG 59.426 40.000 0.00 0.00 31.41 3.21
2331 2691 5.418840 ACCTTACATTTCAGGCAACATAAGG 59.581 40.000 0.00 0.00 42.03 2.69
2483 2843 4.019860 TGATCTTGGCTAAGACTTGCTCTT 60.020 41.667 15.40 0.00 45.17 2.85
2484 2844 3.517100 TGATCTTGGCTAAGACTTGCTCT 59.483 43.478 15.40 0.00 45.17 4.09
2485 2845 3.620821 GTGATCTTGGCTAAGACTTGCTC 59.379 47.826 15.40 8.87 45.17 4.26
2486 2846 3.262915 AGTGATCTTGGCTAAGACTTGCT 59.737 43.478 15.40 8.20 45.17 3.91
2487 2847 3.604582 AGTGATCTTGGCTAAGACTTGC 58.395 45.455 15.40 6.10 45.17 4.01
2488 2848 4.187694 GGAGTGATCTTGGCTAAGACTTG 58.812 47.826 15.40 0.00 45.17 3.16
2565 2927 4.610945 GGTCCAACATTTCTGAACTGTTG 58.389 43.478 30.87 30.87 45.84 3.33
2575 2937 4.092968 GTGTCACTATCGGTCCAACATTTC 59.907 45.833 0.00 0.00 0.00 2.17
2601 2963 2.223548 TGTCACACACATTTTGCTCTGC 60.224 45.455 0.00 0.00 0.00 4.26
2680 3042 1.600636 GCAGGCCTTGTAGTGTGCA 60.601 57.895 0.00 0.00 0.00 4.57
2683 3045 3.906980 AGGCAGGCCTTGTAGTGT 58.093 55.556 0.00 0.00 45.70 3.55
2834 3285 0.804989 CAACCAGATGAGGCGGTTTC 59.195 55.000 0.00 0.00 41.07 2.78
2839 3293 2.028420 TCATTCAACCAGATGAGGCG 57.972 50.000 0.00 0.00 0.00 5.52
2849 3303 8.938906 AGTTGCATTTTATTCATTCATTCAACC 58.061 29.630 0.00 0.00 32.00 3.77
2877 3332 8.490355 CACAAAGGAAAAATTTCTTATCAGCAC 58.510 33.333 5.91 0.00 37.35 4.40
2890 3345 8.485578 TCTATTGGGTTACACAAAGGAAAAAT 57.514 30.769 3.48 0.00 0.00 1.82
2896 3353 5.174037 TCCTCTATTGGGTTACACAAAGG 57.826 43.478 3.48 7.18 0.00 3.11
2912 3369 3.640498 CCAGCAATCTCAGTGATCCTCTA 59.360 47.826 0.00 0.00 33.57 2.43
3003 3463 0.320771 ACGGCAGATCAAGGTGACAC 60.321 55.000 0.00 0.00 0.00 3.67
3005 3465 1.079503 GAACGGCAGATCAAGGTGAC 58.920 55.000 0.00 0.00 0.00 3.67
3051 3511 4.252878 CCTACAGTCACACACATATGCAA 58.747 43.478 1.58 0.00 0.00 4.08
3054 3514 4.402474 TCTCCCTACAGTCACACACATATG 59.598 45.833 0.00 0.00 0.00 1.78
3078 3538 1.683365 GGCACCAGCACCATTCCAT 60.683 57.895 0.00 0.00 44.61 3.41
3119 3579 0.998145 ATCCCTTGGCTTGCTCTCTT 59.002 50.000 0.00 0.00 0.00 2.85
3153 3613 8.834004 AACCCATAACACAAGACTAGAGTATA 57.166 34.615 0.00 0.00 0.00 1.47
3154 3614 7.735326 AACCCATAACACAAGACTAGAGTAT 57.265 36.000 0.00 0.00 0.00 2.12
3155 3615 8.692710 CATAACCCATAACACAAGACTAGAGTA 58.307 37.037 0.00 0.00 0.00 2.59
3156 3616 7.399191 TCATAACCCATAACACAAGACTAGAGT 59.601 37.037 0.00 0.00 0.00 3.24
3157 3617 7.707035 GTCATAACCCATAACACAAGACTAGAG 59.293 40.741 0.00 0.00 0.00 2.43
3262 3725 4.803426 CCGCGCCTCGAGCTTCTT 62.803 66.667 6.99 0.00 41.67 2.52
3339 3802 1.080093 GTTGATGTCGGCGGTCTCA 60.080 57.895 7.21 4.51 0.00 3.27
3401 3873 1.537202 GCAATGGTGGTGACTCTGAAC 59.463 52.381 0.00 0.00 0.00 3.18
3433 3909 1.589716 AATGCAGCCGGAAAGCAGTC 61.590 55.000 18.44 0.00 42.14 3.51
3589 4065 2.021068 ATGGTGGTCTCGGCGATCAG 62.021 60.000 11.27 0.00 32.22 2.90
3763 4263 5.622007 GCCACACAAGCACATTACATTACAT 60.622 40.000 0.00 0.00 0.00 2.29
3764 4264 4.320861 GCCACACAAGCACATTACATTACA 60.321 41.667 0.00 0.00 0.00 2.41
3765 4265 4.082787 AGCCACACAAGCACATTACATTAC 60.083 41.667 0.00 0.00 0.00 1.89
3766 4266 4.078537 AGCCACACAAGCACATTACATTA 58.921 39.130 0.00 0.00 0.00 1.90
3767 4267 2.892852 AGCCACACAAGCACATTACATT 59.107 40.909 0.00 0.00 0.00 2.71
3785 4294 1.139058 ACGAGGAACATACATCCAGCC 59.861 52.381 0.00 0.00 39.55 4.85
3816 4325 0.896940 AGATGTTTGCAGGCCACAGG 60.897 55.000 5.01 0.00 0.00 4.00
3817 4326 0.524862 GAGATGTTTGCAGGCCACAG 59.475 55.000 5.01 0.00 0.00 3.66
3848 4357 1.548081 CATGAACTTGGGTGCCATGA 58.452 50.000 0.00 0.00 38.46 3.07
3854 4363 1.331214 AAGTGCCATGAACTTGGGTG 58.669 50.000 11.58 0.00 36.52 4.61
3858 4367 4.925054 CCACAAATAAGTGCCATGAACTTG 59.075 41.667 18.64 9.10 38.32 3.16
3860 4369 4.151883 ACCACAAATAAGTGCCATGAACT 58.848 39.130 0.00 0.00 38.18 3.01
3874 4383 3.084039 ACGATTGATGCAGACCACAAAT 58.916 40.909 0.00 0.00 0.00 2.32
3899 4439 6.210385 TGTTGTTGTTGATTACCCTATGCATT 59.790 34.615 3.54 0.00 0.00 3.56
3900 4440 5.714333 TGTTGTTGTTGATTACCCTATGCAT 59.286 36.000 3.79 3.79 0.00 3.96
3901 4441 5.073428 TGTTGTTGTTGATTACCCTATGCA 58.927 37.500 0.00 0.00 0.00 3.96
3902 4442 5.637006 TGTTGTTGTTGATTACCCTATGC 57.363 39.130 0.00 0.00 0.00 3.14
3950 4509 8.836413 TCTACAACTTTTTCTTACCAATGTGAG 58.164 33.333 0.00 0.00 0.00 3.51
3964 4523 9.010029 TGTTTTCTTCTCTGTCTACAACTTTTT 57.990 29.630 0.00 0.00 0.00 1.94
3969 4528 7.715265 TGATGTTTTCTTCTCTGTCTACAAC 57.285 36.000 0.00 0.00 0.00 3.32
3983 4542 4.020839 CCAAATGAGCCCTTGATGTTTTCT 60.021 41.667 0.00 0.00 0.00 2.52
3989 4548 1.481871 AGCCAAATGAGCCCTTGATG 58.518 50.000 0.00 0.00 0.00 3.07
3990 4549 2.242882 AAGCCAAATGAGCCCTTGAT 57.757 45.000 0.00 0.00 0.00 2.57
4015 4574 7.505585 TGGAATGGGCTATTCTATCGAAAATTT 59.494 33.333 20.87 0.00 43.81 1.82
4018 4577 5.935945 TGGAATGGGCTATTCTATCGAAAA 58.064 37.500 20.87 0.00 43.81 2.29
4026 4585 3.886938 TCCCTATGGAATGGGCTATTCT 58.113 45.455 20.87 7.00 44.87 2.40
4079 4647 3.967332 TCCTTTGGTACCGTTAGGAAG 57.033 47.619 20.99 11.74 41.02 3.46
4111 5156 6.038714 AGGAATTTCTGAAGGATATTGTTCGC 59.961 38.462 0.00 0.00 0.00 4.70
4194 5248 6.909895 GTGCAATGCAATATATTGACGTGTTA 59.090 34.615 26.22 11.44 41.47 2.41
4292 5359 1.860078 GTCTCCGTTTCGTTGCCTG 59.140 57.895 0.00 0.00 0.00 4.85
4339 5406 4.849518 AGCCTTTTCTTACATCTCCCTTC 58.150 43.478 0.00 0.00 0.00 3.46
4353 5422 3.002759 GCCTCATGTTCGATAGCCTTTTC 59.997 47.826 0.00 0.00 0.00 2.29
4381 5450 0.178068 AGGCCGCGTATGAAGTTCAT 59.822 50.000 21.57 21.57 40.72 2.57
4540 5610 6.480763 TCCTCATGCTTCTAACAAATAACCA 58.519 36.000 0.00 0.00 0.00 3.67
4580 5667 0.807667 CGAGTGATGCTCTTTCCCCG 60.808 60.000 0.00 0.00 41.98 5.73
4583 5670 1.272781 CGTCGAGTGATGCTCTTTCC 58.727 55.000 0.00 0.00 41.98 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.