Multiple sequence alignment - TraesCS4B01G020300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G020300 chr4B 100.000 2594 0 0 1 2594 14387539 14390132 0.000000e+00 4791
1 TraesCS4B01G020300 chr4D 89.099 1532 67 50 481 1932 7910516 7912027 0.000000e+00 1812
2 TraesCS4B01G020300 chr4A 90.565 1399 56 31 514 1882 595360766 595359414 0.000000e+00 1783
3 TraesCS4B01G020300 chr4A 90.546 476 33 11 1 471 595361400 595360932 1.020000e-173 619
4 TraesCS4B01G020300 chr2A 84.856 416 43 12 2038 2447 57897446 57897847 4.020000e-108 401
5 TraesCS4B01G020300 chr2A 87.440 207 21 3 2241 2447 57898211 57898412 1.550000e-57 233
6 TraesCS4B01G020300 chr6B 81.250 528 61 25 2038 2538 72430859 72430343 2.420000e-105 392
7 TraesCS4B01G020300 chr3D 84.000 400 46 10 2083 2474 583488773 583489162 4.080000e-98 368
8 TraesCS4B01G020300 chr3D 80.505 436 34 21 2022 2451 574949215 574949605 1.170000e-73 287
9 TraesCS4B01G020300 chr5A 84.677 372 40 12 2095 2455 568590738 568590373 3.170000e-94 355
10 TraesCS4B01G020300 chrUn 84.874 357 39 10 2093 2447 384079417 384079760 1.910000e-91 346
11 TraesCS4B01G020300 chrUn 87.440 207 21 3 2241 2447 313447513 313447312 1.550000e-57 233
12 TraesCS4B01G020300 chr5D 85.714 112 14 2 1001 1111 13719622 13719512 1.630000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G020300 chr4B 14387539 14390132 2593 False 4791 4791 100.0000 1 2594 1 chr4B.!!$F1 2593
1 TraesCS4B01G020300 chr4D 7910516 7912027 1511 False 1812 1812 89.0990 481 1932 1 chr4D.!!$F1 1451
2 TraesCS4B01G020300 chr4A 595359414 595361400 1986 True 1201 1783 90.5555 1 1882 2 chr4A.!!$R1 1881
3 TraesCS4B01G020300 chr2A 57897446 57898412 966 False 317 401 86.1480 2038 2447 2 chr2A.!!$F1 409
4 TraesCS4B01G020300 chr6B 72430343 72430859 516 True 392 392 81.2500 2038 2538 1 chr6B.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 404 0.106116 ATGAGACGGGGAGTAGGTCC 60.106 60.0 0.0 0.0 46.1 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 1970 0.033781 CGGAACAGGGACGGTAACAA 59.966 55.0 0.0 0.0 34.27 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 0.979665 CTACCGGCCATCTCCATCAT 59.020 55.000 0.00 0.00 0.00 2.45
57 59 0.686789 TACCGGCCATCTCCATCATG 59.313 55.000 0.00 0.00 0.00 3.07
73 75 4.622313 CCATCATGTTTGTTGAATCCGTTG 59.378 41.667 0.00 0.00 0.00 4.10
77 79 2.032302 TGTTTGTTGAATCCGTTGACCG 59.968 45.455 0.00 0.00 0.00 4.79
80 82 2.139917 TGTTGAATCCGTTGACCGAAG 58.860 47.619 0.00 0.00 39.56 3.79
222 225 2.355481 ACGAGTTTGCGTCCGGAC 60.355 61.111 25.28 25.28 41.22 4.79
240 243 2.347731 GACGAAAGATGTGAAGGACCC 58.652 52.381 0.00 0.00 0.00 4.46
247 250 2.103771 AGATGTGAAGGACCCGATCATG 59.896 50.000 0.00 0.00 0.00 3.07
249 252 1.066215 TGTGAAGGACCCGATCATGTG 60.066 52.381 0.00 0.00 0.00 3.21
267 270 3.678289 TGTGTCTCCATCTGATTGTTGG 58.322 45.455 0.00 0.00 36.98 3.77
289 292 2.915738 CATCTCTGCAAAAGTGAGGC 57.084 50.000 0.57 0.00 32.14 4.70
290 293 2.434428 CATCTCTGCAAAAGTGAGGCT 58.566 47.619 0.00 0.00 32.14 4.58
291 294 2.175878 TCTCTGCAAAAGTGAGGCTC 57.824 50.000 7.79 7.79 0.00 4.70
292 295 1.163554 CTCTGCAAAAGTGAGGCTCC 58.836 55.000 12.86 3.35 0.00 4.70
293 296 0.473755 TCTGCAAAAGTGAGGCTCCA 59.526 50.000 12.86 0.00 0.00 3.86
294 297 0.879765 CTGCAAAAGTGAGGCTCCAG 59.120 55.000 12.86 6.18 0.00 3.86
295 298 0.183492 TGCAAAAGTGAGGCTCCAGT 59.817 50.000 12.86 0.19 0.00 4.00
298 301 2.544486 GCAAAAGTGAGGCTCCAGTTTG 60.544 50.000 20.70 20.70 39.04 2.93
307 310 3.500343 AGGCTCCAGTTTGCAATTTACT 58.500 40.909 0.00 0.00 0.00 2.24
308 311 3.507622 AGGCTCCAGTTTGCAATTTACTC 59.492 43.478 0.00 0.00 0.00 2.59
309 312 3.367395 GGCTCCAGTTTGCAATTTACTCC 60.367 47.826 0.00 0.00 0.00 3.85
310 313 3.670627 GCTCCAGTTTGCAATTTACTCCG 60.671 47.826 0.00 0.00 0.00 4.63
311 314 2.227865 TCCAGTTTGCAATTTACTCCGC 59.772 45.455 0.00 0.00 0.00 5.54
312 315 2.595386 CAGTTTGCAATTTACTCCGCC 58.405 47.619 0.00 0.00 0.00 6.13
313 316 1.544246 AGTTTGCAATTTACTCCGCCC 59.456 47.619 0.00 0.00 0.00 6.13
314 317 1.544246 GTTTGCAATTTACTCCGCCCT 59.456 47.619 0.00 0.00 0.00 5.19
318 321 2.092323 GCAATTTACTCCGCCCTTCTT 58.908 47.619 0.00 0.00 0.00 2.52
319 322 2.159379 GCAATTTACTCCGCCCTTCTTG 60.159 50.000 0.00 0.00 0.00 3.02
323 332 3.323751 TTACTCCGCCCTTCTTGTAAC 57.676 47.619 0.00 0.00 0.00 2.50
349 358 3.314635 AGACGTTCTTTCGACACTACACT 59.685 43.478 0.00 0.00 34.70 3.55
392 403 1.033574 CATGAGACGGGGAGTAGGTC 58.966 60.000 0.00 0.00 0.00 3.85
393 404 0.106116 ATGAGACGGGGAGTAGGTCC 60.106 60.000 0.00 0.00 46.10 4.46
404 415 3.029570 GGAGTAGGTCCAGTTATCGGTT 58.970 50.000 0.00 0.00 46.10 4.44
462 473 2.949447 AGTTGCTCATTCCACCACTTT 58.051 42.857 0.00 0.00 0.00 2.66
463 474 4.098914 AGTTGCTCATTCCACCACTTTA 57.901 40.909 0.00 0.00 0.00 1.85
464 475 3.821033 AGTTGCTCATTCCACCACTTTAC 59.179 43.478 0.00 0.00 0.00 2.01
465 476 3.788227 TGCTCATTCCACCACTTTACT 57.212 42.857 0.00 0.00 0.00 2.24
467 478 5.235850 TGCTCATTCCACCACTTTACTTA 57.764 39.130 0.00 0.00 0.00 2.24
468 479 5.815581 TGCTCATTCCACCACTTTACTTAT 58.184 37.500 0.00 0.00 0.00 1.73
469 480 6.245408 TGCTCATTCCACCACTTTACTTATT 58.755 36.000 0.00 0.00 0.00 1.40
470 481 7.398829 TGCTCATTCCACCACTTTACTTATTA 58.601 34.615 0.00 0.00 0.00 0.98
471 482 8.052748 TGCTCATTCCACCACTTTACTTATTAT 58.947 33.333 0.00 0.00 0.00 1.28
472 483 8.903820 GCTCATTCCACCACTTTACTTATTATT 58.096 33.333 0.00 0.00 0.00 1.40
595 737 2.390599 CCGCGTGATTGGTCCACAG 61.391 63.158 4.92 0.00 34.36 3.66
691 833 1.068127 CGTCCGAAAATATCTCCCCGT 59.932 52.381 0.00 0.00 0.00 5.28
692 834 2.480845 GTCCGAAAATATCTCCCCGTG 58.519 52.381 0.00 0.00 0.00 4.94
693 835 1.202604 TCCGAAAATATCTCCCCGTGC 60.203 52.381 0.00 0.00 0.00 5.34
694 836 0.859232 CGAAAATATCTCCCCGTGCG 59.141 55.000 0.00 0.00 0.00 5.34
806 972 2.261671 CCGATCCTTATCCCGCGG 59.738 66.667 21.04 21.04 0.00 6.46
808 974 2.932234 CGATCCTTATCCCGCGGCT 61.932 63.158 22.85 12.06 0.00 5.52
981 1152 4.079253 TCCGTTCGTTAGGGTTTAGTAGT 58.921 43.478 0.00 0.00 33.40 2.73
982 1153 5.250200 TCCGTTCGTTAGGGTTTAGTAGTA 58.750 41.667 0.00 0.00 33.40 1.82
983 1154 5.354234 TCCGTTCGTTAGGGTTTAGTAGTAG 59.646 44.000 0.00 0.00 33.40 2.57
1119 1299 1.305887 CTCCAAGGTACCGTCCCCT 60.306 63.158 6.18 0.00 0.00 4.79
1145 1327 1.822506 TCCGCCCGATAGATCTGTAG 58.177 55.000 5.18 0.00 39.76 2.74
1170 1353 2.012673 GAGATGGATCTGTGGTGTTGC 58.987 52.381 0.00 0.00 37.25 4.17
1185 1368 0.887387 GTTGCGCTTGTGGAACCCTA 60.887 55.000 9.73 0.00 34.50 3.53
1201 1394 2.904434 ACCCTAGATCTGACGGTTTTGT 59.096 45.455 5.18 0.00 0.00 2.83
1202 1395 3.326880 ACCCTAGATCTGACGGTTTTGTT 59.673 43.478 5.18 0.00 0.00 2.83
1608 1810 2.128460 TGAATGGTGGGGCCCCTA 59.872 61.111 40.66 26.75 36.94 3.53
1762 1970 0.109597 CGCTACCGTTCCGTGTTACT 60.110 55.000 0.00 0.00 0.00 2.24
1767 1975 3.451141 ACCGTTCCGTGTTACTTGTTA 57.549 42.857 0.00 0.00 0.00 2.41
1769 1977 2.476241 CCGTTCCGTGTTACTTGTTACC 59.524 50.000 0.00 0.00 0.00 2.85
1770 1978 2.153627 CGTTCCGTGTTACTTGTTACCG 59.846 50.000 0.00 0.00 0.00 4.02
1771 1979 3.123050 GTTCCGTGTTACTTGTTACCGT 58.877 45.455 0.00 0.00 0.00 4.83
1773 1981 2.061028 CCGTGTTACTTGTTACCGTCC 58.939 52.381 0.00 0.00 0.00 4.79
1774 1982 2.061028 CGTGTTACTTGTTACCGTCCC 58.939 52.381 0.00 0.00 0.00 4.46
1775 1983 2.288395 CGTGTTACTTGTTACCGTCCCT 60.288 50.000 0.00 0.00 0.00 4.20
1776 1984 3.062042 GTGTTACTTGTTACCGTCCCTG 58.938 50.000 0.00 0.00 0.00 4.45
1777 1985 2.699846 TGTTACTTGTTACCGTCCCTGT 59.300 45.455 0.00 0.00 0.00 4.00
1778 1986 3.134442 TGTTACTTGTTACCGTCCCTGTT 59.866 43.478 0.00 0.00 0.00 3.16
1815 2036 9.327628 TGAATGAAATGAAAAATCAGAGCAAAA 57.672 25.926 0.00 0.00 0.00 2.44
1830 2051 3.520569 AGCAAAAGTTTGTTCGCATGTT 58.479 36.364 5.71 0.00 40.24 2.71
1854 2082 2.959030 GCTTCCTTGGAAGTTTGTTCCT 59.041 45.455 24.91 0.00 39.31 3.36
1877 2105 3.859411 TTTCTTTTTGTGCCGTGAAGT 57.141 38.095 0.00 0.00 0.00 3.01
1878 2106 3.859411 TTCTTTTTGTGCCGTGAAGTT 57.141 38.095 0.00 0.00 0.00 2.66
1879 2107 3.143807 TCTTTTTGTGCCGTGAAGTTG 57.856 42.857 0.00 0.00 0.00 3.16
1880 2108 2.159310 TCTTTTTGTGCCGTGAAGTTGG 60.159 45.455 0.00 0.00 0.00 3.77
1885 2113 4.090057 GCCGTGAAGTTGGCGCTC 62.090 66.667 7.64 0.00 42.22 5.03
1886 2114 3.777925 CCGTGAAGTTGGCGCTCG 61.778 66.667 7.64 0.00 0.00 5.03
1887 2115 2.733218 CGTGAAGTTGGCGCTCGA 60.733 61.111 7.64 0.00 0.00 4.04
1888 2116 2.094659 CGTGAAGTTGGCGCTCGAT 61.095 57.895 7.64 0.00 0.00 3.59
1889 2117 1.421485 GTGAAGTTGGCGCTCGATG 59.579 57.895 7.64 0.00 0.00 3.84
1890 2118 1.014044 GTGAAGTTGGCGCTCGATGA 61.014 55.000 7.64 0.00 0.00 2.92
1891 2119 0.108186 TGAAGTTGGCGCTCGATGAT 60.108 50.000 7.64 0.00 0.00 2.45
1892 2120 1.136110 TGAAGTTGGCGCTCGATGATA 59.864 47.619 7.64 0.00 0.00 2.15
1893 2121 2.201732 GAAGTTGGCGCTCGATGATAA 58.798 47.619 7.64 0.00 0.00 1.75
1894 2122 2.533266 AGTTGGCGCTCGATGATAAT 57.467 45.000 7.64 0.00 0.00 1.28
1895 2123 2.838736 AGTTGGCGCTCGATGATAATT 58.161 42.857 7.64 0.00 0.00 1.40
1896 2124 3.206150 AGTTGGCGCTCGATGATAATTT 58.794 40.909 7.64 0.00 0.00 1.82
1897 2125 3.627577 AGTTGGCGCTCGATGATAATTTT 59.372 39.130 7.64 0.00 0.00 1.82
1898 2126 3.607422 TGGCGCTCGATGATAATTTTG 57.393 42.857 7.64 0.00 0.00 2.44
1899 2127 2.286950 TGGCGCTCGATGATAATTTTGC 60.287 45.455 7.64 0.00 0.00 3.68
1900 2128 2.031682 GGCGCTCGATGATAATTTTGCT 60.032 45.455 7.64 0.00 0.00 3.91
1901 2129 2.969306 GCGCTCGATGATAATTTTGCTG 59.031 45.455 0.00 0.00 0.00 4.41
1902 2130 2.969306 CGCTCGATGATAATTTTGCTGC 59.031 45.455 0.00 0.00 0.00 5.25
1903 2131 2.969306 GCTCGATGATAATTTTGCTGCG 59.031 45.455 0.00 0.00 0.00 5.18
1904 2132 2.969306 CTCGATGATAATTTTGCTGCGC 59.031 45.455 0.00 0.00 0.00 6.09
1907 2135 1.180907 TGATAATTTTGCTGCGCCCA 58.819 45.000 4.18 0.00 0.00 5.36
1923 2151 2.294233 CGCCCACTGGATGATATTTTGG 59.706 50.000 0.00 0.00 0.00 3.28
1924 2152 2.036346 GCCCACTGGATGATATTTTGGC 59.964 50.000 0.00 0.00 0.00 4.52
1927 2155 1.956477 ACTGGATGATATTTTGGCGCC 59.044 47.619 22.73 22.73 0.00 6.53
1928 2156 0.950836 TGGATGATATTTTGGCGCCG 59.049 50.000 23.90 0.00 0.00 6.46
1929 2157 1.234821 GGATGATATTTTGGCGCCGA 58.765 50.000 23.90 19.26 0.00 5.54
1930 2158 1.812571 GGATGATATTTTGGCGCCGAT 59.187 47.619 23.90 17.71 0.00 4.18
1931 2159 2.228822 GGATGATATTTTGGCGCCGATT 59.771 45.455 23.90 13.28 0.00 3.34
1932 2160 2.772568 TGATATTTTGGCGCCGATTG 57.227 45.000 23.90 0.00 0.00 2.67
1933 2161 1.336440 TGATATTTTGGCGCCGATTGG 59.664 47.619 23.90 0.00 38.77 3.16
1943 2171 4.984194 CCGATTGGCTGGATTGGA 57.016 55.556 0.00 0.00 30.77 3.53
1945 2173 1.696063 CCGATTGGCTGGATTGGATT 58.304 50.000 0.00 0.00 30.77 3.01
1946 2174 2.862541 CCGATTGGCTGGATTGGATTA 58.137 47.619 0.00 0.00 30.77 1.75
1947 2175 3.221771 CCGATTGGCTGGATTGGATTAA 58.778 45.455 0.00 0.00 30.77 1.40
1948 2176 3.828451 CCGATTGGCTGGATTGGATTAAT 59.172 43.478 0.00 0.00 30.77 1.40
1949 2177 4.082571 CCGATTGGCTGGATTGGATTAATC 60.083 45.833 6.93 6.93 43.64 1.75
1970 2198 9.733556 TTAATCCTTACAAATCTAAGAAGTGCA 57.266 29.630 0.00 0.00 0.00 4.57
1971 2199 8.814038 AATCCTTACAAATCTAAGAAGTGCAT 57.186 30.769 0.00 0.00 0.00 3.96
1972 2200 8.814038 ATCCTTACAAATCTAAGAAGTGCATT 57.186 30.769 0.00 0.00 0.00 3.56
1973 2201 8.635765 TCCTTACAAATCTAAGAAGTGCATTT 57.364 30.769 0.00 0.00 0.00 2.32
1974 2202 9.077885 TCCTTACAAATCTAAGAAGTGCATTTT 57.922 29.630 0.00 0.00 0.00 1.82
1975 2203 9.696917 CCTTACAAATCTAAGAAGTGCATTTTT 57.303 29.630 0.00 0.00 0.00 1.94
1996 2224 6.374565 TTTTTCAAAAATTGGTGCAGATGG 57.625 33.333 0.00 0.00 0.00 3.51
1997 2225 4.686191 TTCAAAAATTGGTGCAGATGGT 57.314 36.364 0.00 0.00 0.00 3.55
1998 2226 4.255833 TCAAAAATTGGTGCAGATGGTC 57.744 40.909 0.00 0.00 0.00 4.02
1999 2227 3.640498 TCAAAAATTGGTGCAGATGGTCA 59.360 39.130 0.00 0.00 0.00 4.02
2000 2228 4.283978 TCAAAAATTGGTGCAGATGGTCAT 59.716 37.500 0.00 0.00 0.00 3.06
2001 2229 3.880047 AAATTGGTGCAGATGGTCATG 57.120 42.857 0.00 0.00 0.00 3.07
2002 2230 1.108776 ATTGGTGCAGATGGTCATGC 58.891 50.000 0.00 0.00 42.86 4.06
2003 2231 1.307355 TTGGTGCAGATGGTCATGCG 61.307 55.000 0.00 0.00 45.54 4.73
2004 2232 1.746615 GGTGCAGATGGTCATGCGT 60.747 57.895 0.00 0.00 45.54 5.24
2005 2233 1.308069 GGTGCAGATGGTCATGCGTT 61.308 55.000 0.00 0.00 45.54 4.84
2006 2234 0.097674 GTGCAGATGGTCATGCGTTC 59.902 55.000 0.00 0.00 45.54 3.95
2007 2235 0.321475 TGCAGATGGTCATGCGTTCA 60.321 50.000 0.00 0.00 45.54 3.18
2008 2236 0.376152 GCAGATGGTCATGCGTTCAG 59.624 55.000 0.00 0.00 31.87 3.02
2009 2237 1.012086 CAGATGGTCATGCGTTCAGG 58.988 55.000 0.00 0.00 0.00 3.86
2010 2238 0.745845 AGATGGTCATGCGTTCAGGC 60.746 55.000 0.00 0.00 0.00 4.85
2011 2239 1.718757 GATGGTCATGCGTTCAGGCC 61.719 60.000 0.00 0.00 0.00 5.19
2012 2240 3.499737 GGTCATGCGTTCAGGCCG 61.500 66.667 0.00 0.00 0.00 6.13
2013 2241 2.742372 GTCATGCGTTCAGGCCGT 60.742 61.111 0.00 0.00 0.00 5.68
2014 2242 2.741985 TCATGCGTTCAGGCCGTG 60.742 61.111 0.00 0.00 0.00 4.94
2015 2243 4.465512 CATGCGTTCAGGCCGTGC 62.466 66.667 0.00 0.00 0.00 5.34
2025 2253 3.443045 GGCCGTGCCCTGACAATG 61.443 66.667 3.73 0.00 44.06 2.82
2026 2254 2.359850 GCCGTGCCCTGACAATGA 60.360 61.111 0.00 0.00 0.00 2.57
2027 2255 1.750399 GCCGTGCCCTGACAATGAT 60.750 57.895 0.00 0.00 0.00 2.45
2028 2256 1.315257 GCCGTGCCCTGACAATGATT 61.315 55.000 0.00 0.00 0.00 2.57
2029 2257 0.452987 CCGTGCCCTGACAATGATTG 59.547 55.000 3.16 3.16 0.00 2.67
2030 2258 1.452110 CGTGCCCTGACAATGATTGA 58.548 50.000 12.80 0.00 0.00 2.57
2031 2259 1.811965 CGTGCCCTGACAATGATTGAA 59.188 47.619 12.80 0.00 0.00 2.69
2032 2260 2.424601 CGTGCCCTGACAATGATTGAAT 59.575 45.455 12.80 0.00 0.00 2.57
2033 2261 3.119388 CGTGCCCTGACAATGATTGAATT 60.119 43.478 12.80 0.00 0.00 2.17
2034 2262 4.618927 CGTGCCCTGACAATGATTGAATTT 60.619 41.667 12.80 0.00 0.00 1.82
2035 2263 5.392919 CGTGCCCTGACAATGATTGAATTTA 60.393 40.000 12.80 0.00 0.00 1.40
2036 2264 6.038356 GTGCCCTGACAATGATTGAATTTAG 58.962 40.000 12.80 2.71 0.00 1.85
2068 2300 3.129813 GCATGATGTCAAGGAATTGCTCA 59.870 43.478 0.00 0.00 0.00 4.26
2080 2312 9.691362 TCAAGGAATTGCTCAAATAAAGTTAAC 57.309 29.630 0.00 0.00 0.00 2.01
2089 2321 9.844790 TGCTCAAATAAAGTTAACAGAATCATG 57.155 29.630 8.61 0.00 0.00 3.07
2158 2391 5.576447 ATTTTAAACGTAGCAGATTGGGG 57.424 39.130 0.00 0.00 0.00 4.96
2172 2405 2.871096 TTGGGGACTCGCAAAATACT 57.129 45.000 0.00 0.00 41.81 2.12
2236 2472 6.632434 GCAACACAAAAGGTAAATCAATTTGC 59.368 34.615 0.00 0.00 35.05 3.68
2244 2480 7.406799 AAGGTAAATCAATTTGCAAGTTTCG 57.593 32.000 4.19 0.00 34.62 3.46
2257 2493 5.053145 TGCAAGTTTCGCACCAAAAATTAT 58.947 33.333 0.00 0.00 33.55 1.28
2265 2502 5.147865 TCGCACCAAAAATTATTGTACACG 58.852 37.500 0.00 0.00 0.00 4.49
2272 2509 7.539366 ACCAAAAATTATTGTACACGCATACAC 59.461 33.333 0.00 0.00 34.79 2.90
2331 2568 8.764524 AAGTAGTAAGAAGTTGCATAGTTGAG 57.235 34.615 0.00 0.00 0.00 3.02
2344 2585 4.730035 GCATAGTTGAGCAGTTTCTGATGC 60.730 45.833 0.66 2.13 42.87 3.91
2348 2589 1.271217 TGAGCAGTTTCTGATGCAGCT 60.271 47.619 2.53 0.00 45.01 4.24
2349 2590 1.130749 GAGCAGTTTCTGATGCAGCTG 59.869 52.381 10.11 10.11 45.01 4.24
2387 2628 7.119699 CGATATATGCAAATATCTGTTGGGTGT 59.880 37.037 0.00 0.00 36.91 4.16
2388 2629 4.724074 ATGCAAATATCTGTTGGGTGTG 57.276 40.909 0.00 0.00 0.00 3.82
2389 2630 2.230992 TGCAAATATCTGTTGGGTGTGC 59.769 45.455 0.00 0.00 0.00 4.57
2390 2631 2.417243 GCAAATATCTGTTGGGTGTGCC 60.417 50.000 0.00 0.00 0.00 5.01
2391 2632 1.750193 AATATCTGTTGGGTGTGCCG 58.250 50.000 0.00 0.00 34.97 5.69
2392 2633 0.908910 ATATCTGTTGGGTGTGCCGA 59.091 50.000 0.00 0.00 34.97 5.54
2444 2781 6.951971 AGTCAAAGAACCTATCTGCAAGTAT 58.048 36.000 0.00 0.00 38.79 2.12
2445 2782 8.079211 AGTCAAAGAACCTATCTGCAAGTATA 57.921 34.615 0.00 0.00 38.79 1.47
2446 2783 8.709308 AGTCAAAGAACCTATCTGCAAGTATAT 58.291 33.333 0.00 0.00 38.79 0.86
2447 2784 9.982651 GTCAAAGAACCTATCTGCAAGTATATA 57.017 33.333 0.00 0.00 38.79 0.86
2518 3212 4.757799 AATAATGCGCACACACACTTAA 57.242 36.364 14.90 0.00 0.00 1.85
2530 3224 6.605849 CACACACACTTAATTGAAGGATCAG 58.394 40.000 0.00 0.00 39.74 2.90
2545 3239 9.658799 TTGAAGGATCAGCTTAATAGTATATGC 57.341 33.333 0.00 0.00 36.78 3.14
2546 3240 8.260818 TGAAGGATCAGCTTAATAGTATATGCC 58.739 37.037 0.00 0.00 0.00 4.40
2547 3241 7.739995 AGGATCAGCTTAATAGTATATGCCA 57.260 36.000 0.00 0.00 0.00 4.92
2548 3242 8.150827 AGGATCAGCTTAATAGTATATGCCAA 57.849 34.615 0.00 0.00 0.00 4.52
2550 3244 9.401058 GGATCAGCTTAATAGTATATGCCAATT 57.599 33.333 0.00 0.00 0.00 2.32
2556 3250 7.629222 GCTTAATAGTATATGCCAATTGCTGGG 60.629 40.741 0.00 0.00 46.54 4.45
2557 3251 2.880443 AGTATATGCCAATTGCTGGGG 58.120 47.619 0.00 0.00 46.54 4.96
2558 3252 2.446666 AGTATATGCCAATTGCTGGGGA 59.553 45.455 0.00 0.00 46.54 4.81
2559 3253 2.005370 ATATGCCAATTGCTGGGGAG 57.995 50.000 0.00 0.00 46.54 4.30
2560 3254 0.106066 TATGCCAATTGCTGGGGAGG 60.106 55.000 0.00 0.00 46.54 4.30
2562 3256 2.353610 GCCAATTGCTGGGGAGGTG 61.354 63.158 0.00 0.00 46.54 4.00
2563 3257 1.683365 CCAATTGCTGGGGAGGTGG 60.683 63.158 0.00 0.00 42.17 4.61
2564 3258 1.683365 CAATTGCTGGGGAGGTGGG 60.683 63.158 0.00 0.00 0.00 4.61
2565 3259 3.607084 AATTGCTGGGGAGGTGGGC 62.607 63.158 0.00 0.00 0.00 5.36
2568 3262 4.512914 GCTGGGGAGGTGGGCATC 62.513 72.222 0.00 0.00 0.00 3.91
2569 3263 4.181010 CTGGGGAGGTGGGCATCG 62.181 72.222 0.00 0.00 0.00 3.84
2572 3266 4.554036 GGGAGGTGGGCATCGCTC 62.554 72.222 0.00 0.00 35.81 5.03
2573 3267 3.785859 GGAGGTGGGCATCGCTCA 61.786 66.667 0.00 0.00 36.30 4.26
2574 3268 2.202987 GAGGTGGGCATCGCTCAG 60.203 66.667 0.00 0.00 40.90 3.35
2589 3283 1.789464 GCTCAGCGATGGTAGATTTCG 59.211 52.381 0.00 0.00 36.02 3.46
2590 3284 2.543861 GCTCAGCGATGGTAGATTTCGA 60.544 50.000 0.00 0.00 34.92 3.71
2591 3285 3.046390 CTCAGCGATGGTAGATTTCGAC 58.954 50.000 0.00 0.00 34.92 4.20
2592 3286 1.781429 CAGCGATGGTAGATTTCGACG 59.219 52.381 0.00 0.00 34.92 5.12
2593 3287 0.503117 GCGATGGTAGATTTCGACGC 59.497 55.000 0.00 0.00 38.23 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.875963 CCGGTAGCCAAGCTTGTTG 59.124 57.895 24.35 11.67 40.44 3.33
56 58 2.032302 CGGTCAACGGATTCAACAAACA 59.968 45.455 0.00 0.00 39.42 2.83
57 59 2.288458 TCGGTCAACGGATTCAACAAAC 59.712 45.455 0.00 0.00 44.45 2.93
80 82 2.154854 GCAAAGAAGAAAGGTTGCCC 57.845 50.000 0.00 0.00 40.35 5.36
108 111 4.746611 GCATTGTCTTCCTTTTGGTTCTTG 59.253 41.667 0.00 0.00 41.38 3.02
165 168 0.605589 CTTGAGACGGTGAAGCCTCT 59.394 55.000 0.00 0.00 34.25 3.69
222 225 1.067142 TCGGGTCCTTCACATCTTTCG 60.067 52.381 0.00 0.00 0.00 3.46
231 234 1.207089 GACACATGATCGGGTCCTTCA 59.793 52.381 0.00 0.00 0.00 3.02
267 270 2.419324 CCTCACTTTTGCAGAGATGCTC 59.581 50.000 6.21 0.00 35.49 4.26
278 281 2.544486 GCAAACTGGAGCCTCACTTTTG 60.544 50.000 0.00 0.78 0.00 2.44
289 292 3.670627 GCGGAGTAAATTGCAAACTGGAG 60.671 47.826 1.71 0.00 0.00 3.86
290 293 2.227865 GCGGAGTAAATTGCAAACTGGA 59.772 45.455 1.71 0.00 0.00 3.86
291 294 2.595386 GCGGAGTAAATTGCAAACTGG 58.405 47.619 1.71 0.00 0.00 4.00
292 295 2.595386 GGCGGAGTAAATTGCAAACTG 58.405 47.619 1.71 0.00 0.00 3.16
293 296 1.544246 GGGCGGAGTAAATTGCAAACT 59.456 47.619 1.71 1.82 0.00 2.66
294 297 1.544246 AGGGCGGAGTAAATTGCAAAC 59.456 47.619 1.71 0.00 0.00 2.93
295 298 1.917872 AGGGCGGAGTAAATTGCAAA 58.082 45.000 1.71 0.00 0.00 3.68
298 301 1.751437 AGAAGGGCGGAGTAAATTGC 58.249 50.000 0.00 0.00 0.00 3.56
307 310 1.255882 TACGTTACAAGAAGGGCGGA 58.744 50.000 0.00 0.00 0.00 5.54
308 311 1.997606 CTTACGTTACAAGAAGGGCGG 59.002 52.381 0.00 0.00 0.00 6.13
309 312 2.665052 GTCTTACGTTACAAGAAGGGCG 59.335 50.000 0.00 0.00 33.95 6.13
310 313 2.665052 CGTCTTACGTTACAAGAAGGGC 59.335 50.000 0.00 0.00 36.74 5.19
323 332 3.294943 AGTGTCGAAAGAACGTCTTACG 58.705 45.455 0.00 0.00 45.01 3.18
360 369 5.118990 CCCGTCTCATGATGTAAGATGTTT 58.881 41.667 0.00 0.00 0.00 2.83
365 374 2.959030 CTCCCCGTCTCATGATGTAAGA 59.041 50.000 0.00 0.00 0.00 2.10
373 382 1.033574 GACCTACTCCCCGTCTCATG 58.966 60.000 0.00 0.00 0.00 3.07
392 403 5.178797 AGTTGATTCAGAACCGATAACTGG 58.821 41.667 0.00 0.00 33.19 4.00
393 404 7.827819 TTAGTTGATTCAGAACCGATAACTG 57.172 36.000 0.00 0.00 0.00 3.16
431 442 2.450609 TGAGCAACTTACTTCGGGAC 57.549 50.000 0.00 0.00 0.00 4.46
503 639 9.444600 GGTTTTCTTTCCTGATACTATGTAACA 57.555 33.333 0.00 0.00 0.00 2.41
504 640 8.601476 CGGTTTTCTTTCCTGATACTATGTAAC 58.399 37.037 0.00 0.00 0.00 2.50
506 642 6.759827 GCGGTTTTCTTTCCTGATACTATGTA 59.240 38.462 0.00 0.00 0.00 2.29
507 643 5.585047 GCGGTTTTCTTTCCTGATACTATGT 59.415 40.000 0.00 0.00 0.00 2.29
508 644 5.584649 TGCGGTTTTCTTTCCTGATACTATG 59.415 40.000 0.00 0.00 0.00 2.23
510 646 5.155278 TGCGGTTTTCTTTCCTGATACTA 57.845 39.130 0.00 0.00 0.00 1.82
511 647 4.015872 TGCGGTTTTCTTTCCTGATACT 57.984 40.909 0.00 0.00 0.00 2.12
512 648 4.965119 ATGCGGTTTTCTTTCCTGATAC 57.035 40.909 0.00 0.00 0.00 2.24
774 922 2.996621 GGATCGGGCGAGATATTTTCTG 59.003 50.000 0.00 0.00 33.74 3.02
775 923 2.900546 AGGATCGGGCGAGATATTTTCT 59.099 45.455 0.00 0.00 37.41 2.52
776 924 3.320673 AGGATCGGGCGAGATATTTTC 57.679 47.619 0.00 0.00 0.00 2.29
961 1132 5.030936 GCTACTACTAAACCCTAACGAACG 58.969 45.833 0.00 0.00 0.00 3.95
981 1152 0.042131 TTCCTTCCTCTTCCCCGCTA 59.958 55.000 0.00 0.00 0.00 4.26
982 1153 0.621862 ATTCCTTCCTCTTCCCCGCT 60.622 55.000 0.00 0.00 0.00 5.52
983 1154 0.464554 CATTCCTTCCTCTTCCCCGC 60.465 60.000 0.00 0.00 0.00 6.13
1119 1299 4.289101 TATCGGGCGGATCGGGGA 62.289 66.667 11.11 0.00 36.55 4.81
1145 1327 3.181471 ACACCACAGATCCATCTCGAATC 60.181 47.826 0.00 0.00 34.22 2.52
1170 1353 1.482593 AGATCTAGGGTTCCACAAGCG 59.517 52.381 0.00 0.00 0.00 4.68
1185 1368 2.878406 CACCAACAAAACCGTCAGATCT 59.122 45.455 0.00 0.00 0.00 2.75
1201 1394 2.038820 TGTCAGTGATGATCTGCACCAA 59.961 45.455 12.79 2.16 35.67 3.67
1202 1395 1.624813 TGTCAGTGATGATCTGCACCA 59.375 47.619 12.79 4.28 35.67 4.17
1608 1810 2.182516 ACTAGGATAACTGGCCAGCT 57.817 50.000 33.06 23.84 0.00 4.24
1659 1861 1.944676 CGGGAGCGAGCGATAACAC 60.945 63.158 0.00 0.00 0.00 3.32
1762 1970 0.033781 CGGAACAGGGACGGTAACAA 59.966 55.000 0.00 0.00 34.27 2.83
1767 1975 2.739132 GAACGGAACAGGGACGGT 59.261 61.111 0.00 0.00 39.31 4.83
1769 1977 2.203972 TAGCGAACGGAACAGGGACG 62.204 60.000 0.00 0.00 0.00 4.79
1770 1978 0.175073 ATAGCGAACGGAACAGGGAC 59.825 55.000 0.00 0.00 0.00 4.46
1771 1979 0.174845 CATAGCGAACGGAACAGGGA 59.825 55.000 0.00 0.00 0.00 4.20
1773 1981 2.004583 TTCATAGCGAACGGAACAGG 57.995 50.000 0.00 0.00 0.00 4.00
1774 1982 3.186909 TCATTCATAGCGAACGGAACAG 58.813 45.455 0.00 0.00 36.12 3.16
1775 1983 3.239587 TCATTCATAGCGAACGGAACA 57.760 42.857 0.00 0.00 36.12 3.18
1776 1984 4.593597 TTTCATTCATAGCGAACGGAAC 57.406 40.909 0.00 0.00 36.12 3.62
1777 1985 4.873259 TCATTTCATTCATAGCGAACGGAA 59.127 37.500 0.00 0.00 36.12 4.30
1778 1986 4.438148 TCATTTCATTCATAGCGAACGGA 58.562 39.130 0.00 0.00 36.12 4.69
1876 2104 3.609103 AAATTATCATCGAGCGCCAAC 57.391 42.857 2.29 0.00 0.00 3.77
1877 2105 3.791789 GCAAAATTATCATCGAGCGCCAA 60.792 43.478 2.29 0.00 0.00 4.52
1878 2106 2.286950 GCAAAATTATCATCGAGCGCCA 60.287 45.455 2.29 0.00 0.00 5.69
1879 2107 2.031682 AGCAAAATTATCATCGAGCGCC 60.032 45.455 2.29 0.00 0.00 6.53
1880 2108 2.969306 CAGCAAAATTATCATCGAGCGC 59.031 45.455 0.00 0.00 0.00 5.92
1881 2109 2.969306 GCAGCAAAATTATCATCGAGCG 59.031 45.455 0.00 0.00 0.00 5.03
1899 2127 0.035881 ATATCATCCAGTGGGCGCAG 59.964 55.000 10.83 0.00 0.00 5.18
1900 2128 0.473755 AATATCATCCAGTGGGCGCA 59.526 50.000 10.83 0.00 0.00 6.09
1901 2129 1.609208 AAATATCATCCAGTGGGCGC 58.391 50.000 9.92 0.00 0.00 6.53
1902 2130 2.294233 CCAAAATATCATCCAGTGGGCG 59.706 50.000 9.92 0.35 0.00 6.13
1903 2131 2.036346 GCCAAAATATCATCCAGTGGGC 59.964 50.000 9.92 0.00 0.00 5.36
1904 2132 2.294233 CGCCAAAATATCATCCAGTGGG 59.706 50.000 9.92 0.00 0.00 4.61
1907 2135 1.956477 GGCGCCAAAATATCATCCAGT 59.044 47.619 24.80 0.00 0.00 4.00
1927 2155 5.051891 GATTAATCCAATCCAGCCAATCG 57.948 43.478 3.92 0.00 37.64 3.34
1945 2173 9.905713 ATGCACTTCTTAGATTTGTAAGGATTA 57.094 29.630 0.00 0.00 31.82 1.75
1946 2174 8.814038 ATGCACTTCTTAGATTTGTAAGGATT 57.186 30.769 0.00 0.00 31.82 3.01
1947 2175 8.814038 AATGCACTTCTTAGATTTGTAAGGAT 57.186 30.769 0.00 0.00 31.82 3.24
1948 2176 8.635765 AAATGCACTTCTTAGATTTGTAAGGA 57.364 30.769 0.00 0.00 31.82 3.36
1949 2177 9.696917 AAAAATGCACTTCTTAGATTTGTAAGG 57.303 29.630 0.00 0.00 31.82 2.69
1973 2201 5.884792 ACCATCTGCACCAATTTTTGAAAAA 59.115 32.000 5.47 5.47 0.00 1.94
1974 2202 5.435291 ACCATCTGCACCAATTTTTGAAAA 58.565 33.333 0.00 0.00 0.00 2.29
1975 2203 5.033589 ACCATCTGCACCAATTTTTGAAA 57.966 34.783 0.00 0.00 0.00 2.69
1976 2204 4.100653 TGACCATCTGCACCAATTTTTGAA 59.899 37.500 0.00 0.00 0.00 2.69
1977 2205 3.640498 TGACCATCTGCACCAATTTTTGA 59.360 39.130 0.00 0.00 0.00 2.69
1978 2206 3.992643 TGACCATCTGCACCAATTTTTG 58.007 40.909 0.00 0.00 0.00 2.44
1979 2207 4.571919 CATGACCATCTGCACCAATTTTT 58.428 39.130 0.00 0.00 0.00 1.94
1980 2208 3.618019 GCATGACCATCTGCACCAATTTT 60.618 43.478 0.00 0.00 38.28 1.82
1981 2209 2.093869 GCATGACCATCTGCACCAATTT 60.094 45.455 0.00 0.00 38.28 1.82
1982 2210 1.479323 GCATGACCATCTGCACCAATT 59.521 47.619 0.00 0.00 38.28 2.32
1983 2211 1.108776 GCATGACCATCTGCACCAAT 58.891 50.000 0.00 0.00 38.28 3.16
1995 2223 3.499737 CGGCCTGAACGCATGACC 61.500 66.667 0.00 0.00 0.00 4.02
1996 2224 2.742372 ACGGCCTGAACGCATGAC 60.742 61.111 0.00 0.00 34.00 3.06
1997 2225 2.741985 CACGGCCTGAACGCATGA 60.742 61.111 0.00 0.00 34.00 3.07
1998 2226 4.465512 GCACGGCCTGAACGCATG 62.466 66.667 0.00 0.00 34.00 4.06
2009 2237 1.315257 AATCATTGTCAGGGCACGGC 61.315 55.000 0.00 0.00 0.00 5.68
2010 2238 0.452987 CAATCATTGTCAGGGCACGG 59.547 55.000 0.00 0.00 0.00 4.94
2011 2239 1.452110 TCAATCATTGTCAGGGCACG 58.548 50.000 0.00 0.00 0.00 5.34
2012 2240 4.460948 AATTCAATCATTGTCAGGGCAC 57.539 40.909 0.00 0.00 0.00 5.01
2013 2241 5.951148 TCTAAATTCAATCATTGTCAGGGCA 59.049 36.000 0.00 0.00 0.00 5.36
2014 2242 6.319658 TCTCTAAATTCAATCATTGTCAGGGC 59.680 38.462 0.00 0.00 0.00 5.19
2015 2243 7.870509 TCTCTAAATTCAATCATTGTCAGGG 57.129 36.000 0.00 0.00 0.00 4.45
2053 2281 9.691362 TTAACTTTATTTGAGCAATTCCTTGAC 57.309 29.630 0.00 0.00 34.04 3.18
2054 2282 9.691362 GTTAACTTTATTTGAGCAATTCCTTGA 57.309 29.630 0.00 0.00 34.04 3.02
2089 2321 9.508567 GCTAAGAGTTTTAATTCATCATGGAAC 57.491 33.333 0.00 0.00 0.00 3.62
2142 2375 1.207329 GAGTCCCCAATCTGCTACGTT 59.793 52.381 0.00 0.00 0.00 3.99
2217 2452 9.437045 GAAACTTGCAAATTGATTTACCTTTTG 57.563 29.630 0.00 0.00 0.00 2.44
2228 2464 2.159184 TGGTGCGAAACTTGCAAATTGA 60.159 40.909 0.00 0.00 45.23 2.57
2229 2465 2.200067 TGGTGCGAAACTTGCAAATTG 58.800 42.857 0.00 0.00 45.23 2.32
2236 2472 6.942891 ACAATAATTTTTGGTGCGAAACTTG 58.057 32.000 12.41 0.00 0.00 3.16
2244 2480 4.681942 TGCGTGTACAATAATTTTTGGTGC 59.318 37.500 12.41 8.82 0.00 5.01
2257 2493 0.390078 CCCGGTGTATGCGTGTACAA 60.390 55.000 0.00 0.00 36.42 2.41
2272 2509 3.570912 ATATTGTACTTTCACCCCCGG 57.429 47.619 0.00 0.00 0.00 5.73
2303 2540 9.856488 CAACTATGCAACTTCTTACTACTTCTA 57.144 33.333 0.00 0.00 0.00 2.10
2311 2548 5.409826 ACTGCTCAACTATGCAACTTCTTAC 59.590 40.000 0.00 0.00 38.81 2.34
2331 2568 0.879765 ACAGCTGCATCAGAAACTGC 59.120 50.000 15.27 0.00 38.87 4.40
2387 2628 2.028839 TGTTTATCTCTTCGGTTCGGCA 60.029 45.455 0.00 0.00 0.00 5.69
2388 2629 2.613691 TGTTTATCTCTTCGGTTCGGC 58.386 47.619 0.00 0.00 0.00 5.54
2389 2630 4.868171 TGATTGTTTATCTCTTCGGTTCGG 59.132 41.667 0.00 0.00 34.17 4.30
2390 2631 5.500931 GCTGATTGTTTATCTCTTCGGTTCG 60.501 44.000 0.00 0.00 34.17 3.95
2391 2632 5.582665 AGCTGATTGTTTATCTCTTCGGTTC 59.417 40.000 0.00 0.00 34.17 3.62
2392 2633 5.491982 AGCTGATTGTTTATCTCTTCGGTT 58.508 37.500 0.00 0.00 34.17 4.44
2497 3069 4.757799 TTAAGTGTGTGTGCGCATTATT 57.242 36.364 15.91 4.81 37.46 1.40
2498 3070 4.963276 ATTAAGTGTGTGTGCGCATTAT 57.037 36.364 15.91 0.00 37.46 1.28
2504 3076 3.249799 TCCTTCAATTAAGTGTGTGTGCG 59.750 43.478 2.43 0.00 32.89 5.34
2505 3077 4.829064 TCCTTCAATTAAGTGTGTGTGC 57.171 40.909 2.43 0.00 32.89 4.57
2530 3224 7.629222 CCCAGCAATTGGCATATACTATTAAGC 60.629 40.741 7.72 0.00 46.32 3.09
2538 3232 2.821969 CTCCCCAGCAATTGGCATATAC 59.178 50.000 7.72 0.00 46.32 1.47
2540 3234 1.481802 CCTCCCCAGCAATTGGCATAT 60.482 52.381 7.72 0.00 46.32 1.78
2541 3235 0.106066 CCTCCCCAGCAATTGGCATA 60.106 55.000 7.72 0.00 46.32 3.14
2543 3237 2.037687 CCTCCCCAGCAATTGGCA 59.962 61.111 7.72 0.00 46.32 4.92
2546 3240 1.683365 CCCACCTCCCCAGCAATTG 60.683 63.158 0.00 0.00 0.00 2.32
2547 3241 2.772924 CCCACCTCCCCAGCAATT 59.227 61.111 0.00 0.00 0.00 2.32
2548 3242 4.066139 GCCCACCTCCCCAGCAAT 62.066 66.667 0.00 0.00 0.00 3.56
2551 3245 4.512914 GATGCCCACCTCCCCAGC 62.513 72.222 0.00 0.00 0.00 4.85
2555 3249 4.554036 GAGCGATGCCCACCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
2556 3250 3.746949 CTGAGCGATGCCCACCTCC 62.747 68.421 0.00 0.00 0.00 4.30
2557 3251 2.202987 CTGAGCGATGCCCACCTC 60.203 66.667 0.00 0.00 0.00 3.85
2558 3252 4.479993 GCTGAGCGATGCCCACCT 62.480 66.667 0.00 0.00 0.00 4.00
2569 3263 1.789464 CGAAATCTACCATCGCTGAGC 59.211 52.381 0.00 0.00 0.00 4.26
2570 3264 3.046390 GTCGAAATCTACCATCGCTGAG 58.954 50.000 0.00 0.00 36.56 3.35
2571 3265 2.540973 CGTCGAAATCTACCATCGCTGA 60.541 50.000 0.00 0.00 36.56 4.26
2572 3266 1.781429 CGTCGAAATCTACCATCGCTG 59.219 52.381 0.00 0.00 36.56 5.18
2573 3267 1.864435 GCGTCGAAATCTACCATCGCT 60.864 52.381 0.00 0.00 39.43 4.93
2574 3268 0.503117 GCGTCGAAATCTACCATCGC 59.497 55.000 0.00 0.00 36.56 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.