>input_sequence_74807
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----------------------------------------------------ATGGCGGACGTCGAGTACCGCTGCTTCG
TCGGCGGCCTCGCCTGGGCCACCGACGACCAGTCCCTCCAGAACGCCTTCTCCAAGTACGGCGACGTCATCGACTCCAAG
GTACCGTCCC-------CT--CCCCGATCCGCCCGATAGATCTGTAGATTCG-AGATGGATCTGTGGTGTTGCGCTTGTG
GAACCCTAGATCTGACG----------GTTTTGTTGGTGCAGATCATCACTGACAGGGAGACGGGCCGATCCCGCGGGTT
CGGGTTCGTCACCTTCGCGTCGGACGAGGCGATGCGCCAGGCGATCGAGGCCATGAACGGCCAGGACCTGGACGGCCGCA
ACATCACCGTCAACGAGGCGCAGTCCCGTCGCTCCGGCGGAGGAGGCGGCGGCGGCTT---CGGCGGCGGCGGTGGCGGC
TACGGGGGCCAGCGCCGTGAGGGCGGCGGCGGCGGCGGCTACGGCGGCGGCGGCGGCGGCTACGGAGGTGGCCGCAGCGG
CGGCGGCGGCGGCTACGGCAGCCGTGACGGCGGCGGCTACGGA------GGCGGCGGCGGCGGCGGCTACGGCGGCAGCC
GCGGCGGCTCCGGCGGCGGCAACTGGAGGGAGTGA---------------------------------------------
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>chr4B_1_TraesCS4B01G020300
TGTTTGGGAGTGCCCAAGGCGCGAACAACAA-GCTTGGCTACCGGCCATCTCCATCATGTTTGTTGAATCCGTTGACCGA
AGGGCAA-CCTTTCTTCTTTGCCCCGGGCACAAGAACCAAAAGGAAGACAATGCATCCTCTCCATGGACTCTACGACGAG
GTGTCATAGAGGCTTCACCGTCTCAAGTAGTGCCATCCCCGACGACGACGAGTTTGCGTCCGGACGAAAGATGTGAAGGA
CCCGATCATGTGTCTCCATCTGATTGTTGGAGCATCTCTGCAAAAGTGAGGCTCCAGTTTGCAATTTACTCCGCCCTTCT
TG------TAACGTAAGACGTTCTTTCGACACTACACTAGTGTCAAAAAAACATCTTACATCATGAGAC--GGGGAGTAG
GTCCAGTTATCGGTTCTGAATCAACTAAAAAAAAGTTATCGGTCCCGAAGTAAGTTGCTCATTCCACCACTTTACTTATT
ATTAATCCTG----------------------------------------------------------------------
-------------------------------------------------------GCCTTATTCAAAAAATCATGTTATG
TTACATAGTATC---AGGAAAGAAAACCGCATTTCACTCCAAGTGTGCACTA---CCCCGAAAATATCTGCCGACGTGCC
GCGTGATTGGTCCACAGCCAGGCCCGCCGCGTCACGACCCGATCGGGGCGGGGTTGGTGGCGGCGCGAGAATCGAAAACC
CTAGACGCTCCCCGTCCGAAAATATCTCCCCGTGCGCGCGCGAGCGAGTCAGG---GGCGACCCAATCGTGCGTGGGCTG
GCCCAGAAAGCCAGAGCA---CTCCTCGAGCCCATCGCGCGCAGAAAATATCTC------------------GCCCGATC
CTTATCCCGCGGCTCGCCCGCGCGCCGTCCGATCGGATCTCGACGGCCCGCGCCGCGCCGCGCCCGCTATAAGAGGGGCG
GGTAGGGCAACCTTGACTCCTCGTGCTTTCTCAGGGGTTGGCTTCTCCTCCCCACTCAGTCCTCGGTTCCCGGTCCG---
--GTCCCGTTCCGTTCGTTAGGGTTTAGTAGTAGCGGGGAAGAGGAAG--GAATGGCGGACGTCGAGTACCGCTGCTTCG
TCGGCGGCCTCGCCTGGGCCACCGACGACCAGTCCCTCCAGAACGCCTTCTCCAAGTACGGCGACGTCATCGACTCCAAG
GTACCGTCCC-------CT--CCCCGATCCGCCCGATAGATCTGTAGATTCG-AGATGGATCTGTGGTGTTGCGCTTGTG
GAACCCTAGATCTGACG----------GTTTTGTTGGTGCAGATCATCACTGACAGGGAGACGGGCCGATCCCGCGGGTT
CGGGTTCGTCACCTTCGCGTCGGACGAGGCGATGCGCCAGGCGATCGAGGCCATGAACGGCCAGGACCTGGACGGCCGCA
ACATCACCGTCAACGAGGCGCAGTCCCGTCGCTCCGGCGGAGGAGGCGGCGGCGGCTT---CGGCGGCGGCGGTGGCGGC
TACGGGGGCCAGCGCCGTGAGGGCGGCGGCGGCGGCGGCTACGGCGGCGGCGGCGGCGGCTACGGAGGTGGCCGCAGCGG
CGGCGGCGGCGGCTACGGCAGCCGTGACGGCGGCGGCTACGGA------GGCGGCGGCGGCGGCGGCTACGGCGGCAGCC
GCGGCGGCTCCGGCGGCGGCAACTGGAGGGAGTGAATGGTGGGGCCCCTAGCTGGCCAGTTATCCTAGTTACCGATCCCT
TTTTTTACCTGTCTACCAAAG-TGTTATCGCTCGC-TCCCGAGTAC----CCTAGATCTCGCTCCATCGCGTAGGTTCCG
AGATGTTCTGGCTACCGTTAGATGTGACGCCGCTACCGTTCCGTGTTACTTGTTACCGTCCCTGTTCCGTTCG-------
------CTATGAATGAAATGAAAAATCAGAGCAAAAGTTTGTTCGCATGTTATGCTTCCT-------TGGAAGTTTGTTC
CTTTTTTCTTTTTGTGCCGTGAAGTTGGCGCTCGATGATAATTTTGCTGCGCCCACTGGATGATATTTTGGCGCCGATTG
GCTGGATTGGATTAATCCTTACAAATCTAAGAAGTGCATTTTTTTCAAAAATTGGTGCAGATGGTCATGCGTTCAGGCCG
TGCCCTGACAATGATTGAATTTAGAGAAAAAAGGCATGATGT----CAAGGAATTGCTCAAATAAAGTTAACAGAATCAT
GTTCCATGATGAATTAAAACTCTTAGCAATTAGATGAT-ATAACTCAAATTTTAAACGTAGCAGATTGGGGACTCGCAAA
ATACTGTTACCACATTATGGATCAAATAATTTCTTA--AAAATATGCAACACAAAAGGT-AAATCAATTTGCAAGTTTCG
CACCAAAAATTAT-TGTACACGCATACACCGGGGGTGAAAGTACAATATATTCAATGGATAGAAGTAGTAAGAAGTTGCA
TAGTTGAGCAGTTTCTG----ATGCAGCTGTGGATTCATTCCGATATATGCAAATATCTGTTGGGTGTGCCGAACCGAAG
AGAT-AAACA----------------------------------------------------------------------
-------------------------ATCAGCTTAATAGTCAAAGAACCTATCTGCAAGTATATATATATATGAGACAAAA
GGAATTATA-----------------------------------------------------------------------
--------TATATAGTTACAGAACACT-----------------------------------------------------
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-----------------------AAAAAAATAATGCGCACACACACTT--------------------------------
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----------AATTGAAGGATCAGCTTAATAGTATATGCCAATTGCTGGGGAGGTGGGCATCGCTCAGCGATGGTAGATT
TCGACGC
>chr4A_1
TGTTTGGGAGTGCCCAAGGCGCGAAGAACAACGCTTGGCTACCGGCCATCTCCATCACTTTTGTTGAATCCGTTAACCAA
ATGGCAACCCTTTCTTCTTTGCCCCGGGCATAAGAACCAAAAGGAAGACAATGCATCCTCTCCATGGACTCTACGACGAG
GTGTCATGGAGGCTTCACCGTCTCAAGTAGTGCCATCCCCGACGACGACGAGTTTGCGTCCGGATGAAAGATGCGAAGGA
CCGGATCATAT-TCTCCATCTGATTGTTGTAGCATCTCTGTAAAAGTGAGG-------TTTCAATTTACAATTTTTCTCT
CCGTCCCATAATGTAAGACGTTCTTTTGACACTACACCAGTGTCAAAA-AACAGCTTACATTATGAGACGGGGGGAGTAG
GTATAGTTATCGGTCCTGAATCAACTAAAAA-AAGTTATCGATCCCGAAGTAAGTTGCTCATTCCACCACTTATTATTAG
GCCCTGTTCGGTAGTCATCCAGCCCCGGAAGCACGCAGAGCGATATACTTGGGCGACTCGTAGAAAATGGACTGCGTGCC
GCTTCGCTCCTGCGCAGAGCGGAGAGCTACTCCTACCGAACAGCGCCTCAATGCAGCCTTGTGCAAAAAATTATCAGTGT
CACA----TATC---AAGAAAGAAAACCGCATTTCACTCCAAGTGTGCACTAG---CCCGAAAATATCTGCCGACGTGCC
GCGTGATTGGTCCATA-CCAGGCCCGCCGCGTCACGACCCGATCGGGGCGGGGTTGGTGGCGGCGCGAGAATCCAAAACC
CTAGACGCTCCCCGTCCGAAAATATCTCCCCG--------CGAGCGAGTCAGG---GGCGACCCAATCGTGCGTGGGCTG
GCCCAGAAAGCCAGAACA---CTCCTCGAGCCCATCGCGCG---AAAATATCTCGCCCC---------------CCGATC
CTTATCCCGCG----------GCGCCGTCCGATCCGATCACGACGGCCCGCGCGGCGCCGCGCGCGCTATAAAAGGCGCG
GGTAGGGCAACCTTGACTCCTCGTGCTTTCTCAGGGGTTGGCTTCTCCTCCCCACTCAGTCCTCGGTTCCCGGCCCG---
-------GTTCGGTTCGTTAGGGTTTAGTAG---TGGGGAAGAGGAGGAAGAATGGCGGACGTCGAGTACCGCTGCTTCG
TCGGCGGCCTCGCCTGGGCCACCGACGACCAGTCCCTCCAGAACGCCTTCTCCAAGTACGGCGACGTCATCGACTCCAAG
GTACCGTCCC-------CCTCCCCCGATCCGCCCGATAGATCTGTGAATTCG-AGATGGATCTGTGGTTTTTTGCTTGTG
GAGATCTGACC------GGTTTGGTGTGTTTTGGCGGTGCAGATCATCACTGACAGGGAGACGGGCCGTTCCCGCGGGTT
CGGGTTCGTCACCTTCGCGTCGGACGAGGCGATGCGCCAGGCGATCGAGGCCATGAACGGCCAGGACCTGGACGGCCGCA
ACATCACCGTCAACGAGGCCCAGTCCCGCCGCTCCGGCGGAGGCGGCGGCGGCTTCA---GCGGCGGAGGCGGTGGCGGC
TACGGCGGCCAGCGCCGCGAG---GGCGGCGGCGGCGGCTACGGCGGCGGCGGCGGTGGCTACGGAGGTGGCCGCAGCGG
CGGCGGCGGTGGCTACGGCAGCCGTGAGGGCGGCGGCGGCTA------CGGCGGCGGCGGCGGCGGCTACGGCGGCAGCC
GCGGCGGCTCCGGCGGCGGCAACTGGAGGGAGTGAATGGTGGGGCCCCTCGCTGGCCAGTTATCCTAGTTACCCGATCCG
-TTTTTACCTGTCTACCAAAA-TGTTATCGCTCGC-TCGCTCCCGAGTATCCTAGATCTCGCTCCGTCGCGTAGGTTCCG
AGATGTTCAGGCTACCGTTAGATGTGACGCTGCTACCGTTCCGTGTTAC-TGTTCCGTCC------CCGCTCTGTTCGCT
ATGCTTCTAAGATTGAAATGAAAACCT-GAGCAAA-GTTTGTTCGCATGTGATGCTTCTCTCGGAAGTTTGTTCC-----
-----TTCTGTTTGTGCCGTGAACGCTTGGC-------------------------------------------------
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>chr4D_481
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-------------------------------------------------------GCCTTGTTCAGAAAATAATGTTACA
TAGGAGTATTACCAAAGAAAGGAAAACTGCATTTCACTCCAAGTGTGCACTAGTACCCCGGAAATATCTGCCGACGTGCC
GCGTGATTGGTCCACA-CCAGGCCCGGCGCGTCAGGA-CCGATCGGGGCGGGGTTGGTGGCGGCGCGAGAATCGAAAACC
CTAGACGCTCCCCGTCCGAAAATATCTCCCCC----CGCGCGAGCGAGTCAGGAGGGGCGACCCAATCGTGCGTGGGCTG
GCCCAGAAAGCCAGAGAGCCGCTCCTCGAGCCCATCGCGCG---AAAATATCTCGCCCCAGCCAGCCAGATCGCCCGATC
CTTATCCCGCGACGCGCCCGCGCGCCGTCCGATCGGATCACGACGGCCGGCGCGGCGCCGCGCGCGCTATAAAAGGGGCG
GGTAGGGCAACCTTGACTCCTCGTGCTTTCTCAGGGGTTGGCTTCTCCTCCCCACTCAGTCCTCGGTTCCCGGTCCGGTT
CGGTTCCGTTCGGTTCGTTAGGGTTTAGTAG---CGGGGAAGAGGAAG--GCATGGCGGACGTCGAGTACCGCTGCTTCG
TGGGCGGCCTCGCCTGGGCCACCGACGACCAGTCCCTCCAGAACGCCTTCTCCAAGTACGGCGACGTCATCGACTCCAAG
GTACCGATCCCCCGTCTCCTCCCCCGATCCGCCCGATAGATCTCTAAATTCGTAGGTGGATCTGTGGTGTTGTGCTTGCG
GAACCCTGGATCTGACGGGTTTGGTGTGTTTTGGCGGTGCAGATCATCACTGACAGGGAGACGGGCCGTTCCCGCGGGTT
CGGGTTCGTCACCTTCGCGTCGGACGAGGCGATGCGCCAGGCGATCGAGGCCATGAACGGCCAGGACCTGGACGGCCGCA
ACATCACCGTCAACGAGGCCCAGTCCCGCCGCTCCGGCGGAGGCGGCGGCGGCTTCGGCGGCGGCGGCGGCGGCGGCGGC
TACGGCGGCCAGCGTCGTGAAGGAGGAGGCGGCGGCGGCTACGGCGGCGGCGGCGGTGGCTACGGAGGTGGCCGCAGCGG
CGGCGGCGGTGGCTACGGCAGCCGTGAGGGCGGCGGCGGCTACGGCAGCGGCGGCGGCGGCGGCGGCTACGGCGGCAGCC
GCGGCGGCTCCGGCGGCGGCAACTGGAGGGAGTGAATGGTGGGGCCGCTCGCTGGCCAGTTATCCTAGTTACCGATCC-T
TTTTTTACCTGTCTACCAAAAGTGTTATCGCTCGCCTCCCGAGTAC----CCTAGATCTCGCTCCATCGCGTAGGTTCCG
AGATGTTCTGGCTACCGTTAGATGTGACGCCGCTACCGTTCCGTGTTACCTGTTCCGTCC------CCGTTGG-------
------CTATGAATGAAATGAAAAATCAGAGCAAA-GTTTGTTCGCATATGATGCTTCTCGCGGAAGTGCAAGTTTGTTC
C-TTTTTCTGTTTGTGCCGTGAACGCTTTACCTTG-----------------CCGCTGGATGATATTTTGCTGCACCCAC
TAGGGCCATGTT---------------------------------------TTGGTGCAGATT-----------------
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>chr2A_2038
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------------------------AGAAAAAAGGCATGATACCAGGCAAGGAATTGCTCGAATAAAGTTAA-AGAATCAT
TGCCCATGATGAATTAACACTTTTAGCAATTAAATGGT-ATTACTCAAATTTTACACGTGGCAAATTGGGAACTCGCAAA
ATACGGTTACCACATTATGGATCTTAAAATTTCTTATAAAAATATGCAATAAAAAAGTTAAAGCGA---------TTTCA
CACCGAAAATTAA-TGTCCACACATACAACGGGGGTGAAAGTACAATATATTCAATGGAAAGAAGTAATAAGAAGTTGCA
TAGTTGATCAGTTTCTG----ATGTGGTCATGGATTCATTCCGATATATGCAAATATATGTTGGGTGC-----GCCGAAG
AGATAAATAATCAACTGAATAATCAAAGTACCTACCTGCAAGTATATGAGACAAAAAGCAATTATATTCGCATTGAAAAT
TAATGTACACACACTTAGTTGAAGCATCAACTTAATAGTCAAAGAGCCTACCTGCAAGAA----TATATATGAGACAAAA
AGAATTGAAAAGCAACTTCGACGGAGATGAGATAGACCACATTAATAGTAGTGCTCCCTTTCCTGAAACAAATTTAACTG
CGTGCAAGTATATATCGACTTACAGATCTATCCATCTCTTGTGGGGAAAAATTATTTTCTTGAATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTAAAGCGATTTCACACCGAAAAT-TAATGTCCACACATACAACGGGGGTGAAAGTACAATATATTCAATGGAAA
GAAGTAATAAGAAGTTGCATAGTTGATCAGTTTCTGATGTGGTCATGGATTCATTCCGATATATGCAAATATATGTTGGG
TGCGCCGAAGAGATAAATAATCAACTGAATAATCAAAGTACCTACCTGCAAGTATAT-----------------------
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>chr6B_2038
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------------------------AGAAAAAAGACATGATACCAGGCAAGGCATTGCTCGAATGAAGTTAA-AGAATCAC
ATTCCATGATGAATTTAAACTTTTAGCAATTAAATGGTTATAACTCAAATCTTACATGTAGCAGATTGGGAAATCGCAAA
ATACGTTTACCACATAATGGCTCTGATAATTTCTTACAAGTATATGCTACAAAAAAGGTTAAAGTAATTTGAAAGTTTGA
CACCAAAAATTAAATGTACACACATACAACGGCGGTGAAAATACAGTATATTCAATGGAAAGAAGTAACGAAAAGTTGCA
TAGTTGAACAGTTTCCTAAGTATGTAGCCATGGATTCTTTCCACTATATGAAAATATCTGTTGGGTGC-----ACCCAAG
AGATAAAACA----------------------------------------------------------------------
-------------------------ATCAGCTTAATAGTCAAAGAACCTACCTGCAAGTA----TATATATGAGACAAAA
AGAATTATATTAGCAT----------------------------------------------------------------
--TGCAAGTATATAGTCAAAGAGCAAT-----------------------------------------------------
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-----------------------GAAAAT-TAATGTACACACACACTT--------------------------------
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----------AGTTGAAGGATGACCTTAATA-------------------------------------------------
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>SNPs
-------------------------S-------------------------------SS---------------S---S-
-S----------------------------S-------------------------------------------------
-------S--------------------------------------------------------S--------S------
--S------S-S-----------------S----------S----------SSSSSSS--S--------SSSSSSSS---
SS---------S--------------S----------S----------S----S-------S------------------
--SS----------S----------------S---------S------------------------------SSSS-SSS
SSSSSSSSS-----------------------------------------------------------------------
------------------------------------------------------------S----------S------SS
-SSS-SSS------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------SSSS--------------------------------------------
-----------------------------------------SSS------------------------------------
-----------S-S-------------------------S-------------S---------S--------S-------
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----S------S-------------------SSS----------------------------------------------
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------------------S---------------------------S-------------------------S-------
-------S-------------------------SS---------------------------------S-----------
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-------------------S--------S--------------S---------SS-SS----------------------
-----S-----------------S--------------------------------S-----------------------
---------S-----------------S---------SS-SSS-------------------------------------
-------------------------------------------------S------------------------------
--------------------S-----------------------------------------------------------
-------------------------------------------------S----S-SSS-SSSSSS--------------
-----------------------------------S--------------S-------SS---------S----------
-S-------S-------------SSSSSS--SSSSSSSSSSSSSSSSSSSSS--S---------------SS--SSSSSS
SSS--SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS----------------SS-----------------S-----------S--------
S--------------------S----------S---S-----------------S---------------S---------
----S------------------SS--------------------------S-----------SS------S-------S
------------S--------S------S------------------------------S-------S------------
-------S----------------S---SS-------------------------------------SSSSSS-------
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--------------------------------------------------S---------SSSS----------------
S-------------------------------------------------------------------------------
----------------S-----S--S------------------------------------------------------
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-----------------------S----SS-----SS-------------------------------------------
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-----------S-----------S-------S-SS-S-SSSS-SS---SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_404
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----------------------------------------------------------------ATGAGACGGGGAGTAG
GTCC----------------------------------------------------------------------------
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>reverse_1970
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-------------------------------------------------TTGTTACCGTCCCTGTTCCG-----------
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