Multiple sequence alignment - TraesCS4B01G018500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G018500 chr4B 100.000 2363 0 0 1 2363 13394470 13396832 0.000000e+00 4364.0
1 TraesCS4B01G018500 chr4B 88.500 200 13 4 871 1066 291450800 291450993 1.410000e-57 233.0
2 TraesCS4B01G018500 chr4B 93.694 111 6 1 532 642 568662298 568662189 5.220000e-37 165.0
3 TraesCS4B01G018500 chr4B 92.727 110 7 1 533 642 652821863 652821971 8.740000e-35 158.0
4 TraesCS4B01G018500 chr4A 90.122 1397 67 32 638 2000 596002783 596001424 0.000000e+00 1749.0
5 TraesCS4B01G018500 chr4A 90.440 523 20 7 1 523 596003343 596002851 0.000000e+00 662.0
6 TraesCS4B01G018500 chr4A 94.595 37 2 0 2311 2347 596001385 596001349 9.120000e-05 58.4
7 TraesCS4B01G018500 chr4D 89.756 1396 72 31 638 2000 7586936 7588293 0.000000e+00 1720.0
8 TraesCS4B01G018500 chr4D 91.149 531 19 3 1 530 7586359 7586862 0.000000e+00 695.0
9 TraesCS4B01G018500 chr1B 96.407 167 5 1 2085 2250 628047271 628047105 8.320000e-70 274.0
10 TraesCS4B01G018500 chr1B 93.458 107 6 1 533 639 56495765 56495870 8.740000e-35 158.0
11 TraesCS4B01G018500 chr7A 96.386 166 5 1 2086 2250 48903750 48903915 2.990000e-69 272.0
12 TraesCS4B01G018500 chr7A 86.058 208 15 10 871 1073 649715410 649715608 6.620000e-51 211.0
13 TraesCS4B01G018500 chr5D 94.118 170 8 2 2088 2255 92111549 92111718 8.380000e-65 257.0
14 TraesCS4B01G018500 chr5D 93.143 175 10 2 2081 2253 274578005 274578179 3.010000e-64 255.0
15 TraesCS4B01G018500 chr5D 92.614 176 9 4 2079 2251 178936050 178936224 1.400000e-62 250.0
16 TraesCS4B01G018500 chr6B 94.083 169 8 2 2088 2254 226362480 226362648 3.010000e-64 255.0
17 TraesCS4B01G018500 chr6B 93.578 109 6 1 534 642 413647558 413647451 6.760000e-36 161.0
18 TraesCS4B01G018500 chr2D 93.605 172 9 2 2083 2252 632423753 632423582 3.010000e-64 255.0
19 TraesCS4B01G018500 chr3B 91.257 183 12 4 2075 2254 52743930 52744111 1.810000e-61 246.0
20 TraesCS4B01G018500 chr3B 87.204 211 15 6 871 1076 727081905 727081702 1.830000e-56 230.0
21 TraesCS4B01G018500 chr3D 89.583 192 16 4 2067 2255 360696012 360695822 8.440000e-60 241.0
22 TraesCS4B01G018500 chr5B 88.000 200 14 4 871 1066 544816086 544816279 6.570000e-56 228.0
23 TraesCS4B01G018500 chr5B 86.256 211 17 6 871 1076 711785546 711785749 3.950000e-53 219.0
24 TraesCS4B01G018500 chr5B 89.516 124 10 3 521 642 478502433 478502555 1.130000e-33 154.0
25 TraesCS4B01G018500 chr2B 85.784 204 11 5 871 1066 33676358 33676165 1.430000e-47 200.0
26 TraesCS4B01G018500 chr2B 93.636 110 6 1 533 642 785220838 785220946 1.880000e-36 163.0
27 TraesCS4B01G018500 chr3A 92.188 128 8 2 950 1076 612613618 612613744 1.870000e-41 180.0
28 TraesCS4B01G018500 chrUn 95.238 105 5 0 538 642 52138904 52139008 1.450000e-37 167.0
29 TraesCS4B01G018500 chr5A 93.694 111 7 0 532 642 26117339 26117449 1.450000e-37 167.0
30 TraesCS4B01G018500 chr7B 88.281 128 13 2 516 642 167574542 167574668 4.070000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G018500 chr4B 13394470 13396832 2362 False 4364.000000 4364 100.0000 1 2363 1 chr4B.!!$F1 2362
1 TraesCS4B01G018500 chr4A 596001349 596003343 1994 True 823.133333 1749 91.7190 1 2347 3 chr4A.!!$R1 2346
2 TraesCS4B01G018500 chr4D 7586359 7588293 1934 False 1207.500000 1720 90.4525 1 2000 2 chr4D.!!$F1 1999

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
521 523 0.033781 TGCCTGGCTCAAACATTTGC 59.966 50.0 21.03 0.0 38.05 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2195 0.177836 CATCCGCATGTGGTAGTCCA 59.822 55.0 24.28 4.84 42.05 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 9.807649 CGACTAAAGCTATACCTAAACCTTTTA 57.192 33.333 0.00 0.00 0.00 1.52
129 130 4.081862 CGTGTATGTCCTCCACCTCTAAAA 60.082 45.833 0.00 0.00 0.00 1.52
154 155 2.113986 ACAGGTGGCTGCTGGAAC 59.886 61.111 0.00 0.00 0.00 3.62
157 158 2.360475 GGTGGCTGCTGGAACCTC 60.360 66.667 0.00 0.00 0.00 3.85
161 162 0.833287 TGGCTGCTGGAACCTCTATC 59.167 55.000 0.00 0.00 0.00 2.08
250 252 4.783227 AGAAAGGCTAGTGGATGGAGTAAA 59.217 41.667 0.00 0.00 0.00 2.01
317 319 3.177228 AGTATCTCAGGAACCAACTGCT 58.823 45.455 0.00 0.00 35.94 4.24
451 453 2.399580 ACCTAATCTGGTAGCAGGGTC 58.600 52.381 21.22 0.00 38.79 4.46
521 523 0.033781 TGCCTGGCTCAAACATTTGC 59.966 50.000 21.03 0.00 38.05 3.68
530 532 4.562143 GGCTCAAACATTTGCAGAAATCCT 60.562 41.667 0.00 0.00 38.05 3.24
531 533 5.336690 GGCTCAAACATTTGCAGAAATCCTA 60.337 40.000 0.00 0.00 38.05 2.94
533 535 6.646240 GCTCAAACATTTGCAGAAATCCTAAA 59.354 34.615 0.00 0.00 38.05 1.85
534 536 7.171337 GCTCAAACATTTGCAGAAATCCTAAAA 59.829 33.333 0.00 0.00 38.05 1.52
535 537 8.954950 TCAAACATTTGCAGAAATCCTAAAAA 57.045 26.923 0.00 0.00 38.05 1.94
536 538 8.825745 TCAAACATTTGCAGAAATCCTAAAAAC 58.174 29.630 0.00 0.00 38.05 2.43
539 559 8.729805 ACATTTGCAGAAATCCTAAAAACAAA 57.270 26.923 0.00 0.00 28.65 2.83
543 563 8.592105 TTGCAGAAATCCTAAAAACAAATGAG 57.408 30.769 0.00 0.00 0.00 2.90
547 567 8.359642 CAGAAATCCTAAAAACAAATGAGACCA 58.640 33.333 0.00 0.00 0.00 4.02
548 568 8.923270 AGAAATCCTAAAAACAAATGAGACCAA 58.077 29.630 0.00 0.00 0.00 3.67
549 569 9.710900 GAAATCCTAAAAACAAATGAGACCAAT 57.289 29.630 0.00 0.00 0.00 3.16
551 571 7.227049 TCCTAAAAACAAATGAGACCAATCC 57.773 36.000 0.00 0.00 0.00 3.01
556 576 5.972107 AACAAATGAGACCAATCCAAGAG 57.028 39.130 0.00 0.00 0.00 2.85
558 578 4.015084 CAAATGAGACCAATCCAAGAGCT 58.985 43.478 0.00 0.00 0.00 4.09
562 582 3.055094 TGAGACCAATCCAAGAGCTAACC 60.055 47.826 0.00 0.00 0.00 2.85
564 584 2.239907 GACCAATCCAAGAGCTAACCCT 59.760 50.000 0.00 0.00 0.00 4.34
565 585 2.239907 ACCAATCCAAGAGCTAACCCTC 59.760 50.000 0.00 0.00 0.00 4.30
566 586 2.555199 CAATCCAAGAGCTAACCCTCG 58.445 52.381 0.00 0.00 36.95 4.63
569 589 1.275291 TCCAAGAGCTAACCCTCGTTG 59.725 52.381 0.00 0.00 36.95 4.10
572 592 1.629043 AGAGCTAACCCTCGTTGACA 58.371 50.000 0.00 0.00 36.95 3.58
574 594 2.567615 AGAGCTAACCCTCGTTGACATT 59.432 45.455 0.00 0.00 36.95 2.71
575 595 3.008049 AGAGCTAACCCTCGTTGACATTT 59.992 43.478 0.00 0.00 36.95 2.32
577 597 5.099042 AGCTAACCCTCGTTGACATTTAT 57.901 39.130 0.00 0.00 33.17 1.40
578 598 5.497474 AGCTAACCCTCGTTGACATTTATT 58.503 37.500 0.00 0.00 33.17 1.40
579 599 5.944007 AGCTAACCCTCGTTGACATTTATTT 59.056 36.000 0.00 0.00 33.17 1.40
580 600 7.107542 AGCTAACCCTCGTTGACATTTATTTA 58.892 34.615 0.00 0.00 33.17 1.40
581 601 7.773690 AGCTAACCCTCGTTGACATTTATTTAT 59.226 33.333 0.00 0.00 33.17 1.40
582 602 9.048446 GCTAACCCTCGTTGACATTTATTTATA 57.952 33.333 0.00 0.00 33.17 0.98
586 606 9.326413 ACCCTCGTTGACATTTATTTATAGAAG 57.674 33.333 0.00 0.00 0.00 2.85
595 615 9.865484 GACATTTATTTATAGAAGAAACTCCGC 57.135 33.333 0.00 0.00 0.00 5.54
596 616 8.548721 ACATTTATTTATAGAAGAAACTCCGCG 58.451 33.333 0.00 0.00 0.00 6.46
597 617 8.761497 CATTTATTTATAGAAGAAACTCCGCGA 58.239 33.333 8.23 0.00 0.00 5.87
598 618 7.925703 TTATTTATAGAAGAAACTCCGCGAG 57.074 36.000 8.23 5.77 35.52 5.03
599 619 2.211353 ATAGAAGAAACTCCGCGAGC 57.789 50.000 8.23 0.00 32.04 5.03
600 620 0.885879 TAGAAGAAACTCCGCGAGCA 59.114 50.000 8.23 0.00 32.04 4.26
601 621 0.667792 AGAAGAAACTCCGCGAGCAC 60.668 55.000 8.23 0.00 32.04 4.40
602 622 1.627550 GAAGAAACTCCGCGAGCACC 61.628 60.000 8.23 0.00 32.04 5.01
603 623 2.357034 GAAACTCCGCGAGCACCA 60.357 61.111 8.23 0.00 32.04 4.17
604 624 2.665185 AAACTCCGCGAGCACCAC 60.665 61.111 8.23 0.00 32.04 4.16
615 635 3.649986 GCACCACGCGTTCAAGCT 61.650 61.111 10.22 0.00 34.40 3.74
616 636 2.249309 CACCACGCGTTCAAGCTG 59.751 61.111 10.22 0.00 34.40 4.24
617 637 2.972505 ACCACGCGTTCAAGCTGG 60.973 61.111 10.22 8.84 39.57 4.85
618 638 3.726517 CCACGCGTTCAAGCTGGG 61.727 66.667 10.22 0.02 34.24 4.45
619 639 2.664851 CACGCGTTCAAGCTGGGA 60.665 61.111 10.22 0.00 34.40 4.37
620 640 2.665185 ACGCGTTCAAGCTGGGAC 60.665 61.111 5.58 0.00 34.40 4.46
621 641 2.357517 CGCGTTCAAGCTGGGACT 60.358 61.111 0.00 0.00 34.40 3.85
622 642 1.961277 CGCGTTCAAGCTGGGACTT 60.961 57.895 0.00 0.00 34.40 3.01
623 643 1.576421 GCGTTCAAGCTGGGACTTG 59.424 57.895 0.00 0.00 46.86 3.16
629 649 3.614399 AAGCTGGGACTTGAACTCG 57.386 52.632 0.00 0.00 0.00 4.18
630 650 0.035458 AAGCTGGGACTTGAACTCGG 59.965 55.000 0.00 0.00 0.00 4.63
631 651 1.376037 GCTGGGACTTGAACTCGGG 60.376 63.158 0.00 0.00 0.00 5.14
632 652 2.058675 CTGGGACTTGAACTCGGGT 58.941 57.895 0.00 0.00 0.00 5.28
633 653 0.320771 CTGGGACTTGAACTCGGGTG 60.321 60.000 0.00 0.00 0.00 4.61
634 654 1.003718 GGGACTTGAACTCGGGTGG 60.004 63.158 0.00 0.00 0.00 4.61
635 655 1.003718 GGACTTGAACTCGGGTGGG 60.004 63.158 0.00 0.00 0.00 4.61
636 656 1.671379 GACTTGAACTCGGGTGGGC 60.671 63.158 0.00 0.00 0.00 5.36
663 683 1.407299 CGGTGGATTGATCAGCAAGGA 60.407 52.381 0.00 0.00 40.42 3.36
768 788 3.617288 GCCAGAGTTTTTAAATGCCAGGG 60.617 47.826 0.00 0.00 0.00 4.45
862 882 3.798337 GCAACGCCTTCCAATCATAAATG 59.202 43.478 0.00 0.00 0.00 2.32
911 931 1.134729 TCGCAACCGTAATAACCTCCC 60.135 52.381 0.00 0.00 35.54 4.30
912 932 1.134610 CGCAACCGTAATAACCTCCCT 60.135 52.381 0.00 0.00 0.00 4.20
913 933 2.558378 GCAACCGTAATAACCTCCCTC 58.442 52.381 0.00 0.00 0.00 4.30
914 934 2.744166 GCAACCGTAATAACCTCCCTCC 60.744 54.545 0.00 0.00 0.00 4.30
961 989 2.330393 CAGCACAGCACAGCACAC 59.670 61.111 0.00 0.00 0.00 3.82
966 994 1.820906 ACAGCACAGCACACCACAG 60.821 57.895 0.00 0.00 0.00 3.66
970 998 2.896854 ACAGCACACCACAGCACG 60.897 61.111 0.00 0.00 0.00 5.34
1014 1042 3.036819 AGCAGCAATGGAGATAGAGTCA 58.963 45.455 0.00 0.00 0.00 3.41
1079 1107 0.179137 TACATTGCGAGCGTGAGAGG 60.179 55.000 7.17 0.00 0.00 3.69
1155 1183 3.130160 GGCAGGAAGAAGCAGGCG 61.130 66.667 0.00 0.00 0.00 5.52
1261 1289 4.819761 TGCGTCAGATGCTCCGGC 62.820 66.667 15.79 0.00 39.26 6.13
1306 1337 4.150454 CGGGCTCCTCCTCCTCCT 62.150 72.222 0.00 0.00 34.39 3.69
1307 1338 2.123033 GGGCTCCTCCTCCTCCTC 60.123 72.222 0.00 0.00 34.39 3.71
1310 1341 1.457455 GCTCCTCCTCCTCCTCCAG 60.457 68.421 0.00 0.00 0.00 3.86
1367 1402 2.320367 CGTGTCGCTATATTGAGGAGC 58.680 52.381 0.00 0.00 0.00 4.70
1400 1437 2.032620 CTATGGCTTGTAGACCGTCCT 58.967 52.381 0.00 0.00 0.00 3.85
1401 1438 1.276622 ATGGCTTGTAGACCGTCCTT 58.723 50.000 0.00 0.00 0.00 3.36
1495 1532 9.746711 CAAGAATTTAGAATGTACAGAAAGTCG 57.253 33.333 0.33 0.00 31.37 4.18
1519 1556 7.279090 TCGTAAATTTCTTCGAAATGGATGCTA 59.721 33.333 0.00 0.00 0.00 3.49
1520 1557 7.908082 CGTAAATTTCTTCGAAATGGATGCTAA 59.092 33.333 0.00 0.00 0.00 3.09
1521 1558 9.736023 GTAAATTTCTTCGAAATGGATGCTAAT 57.264 29.630 0.00 0.00 0.00 1.73
1552 1589 1.888512 TGGCTTTGAAATGAGACTGCC 59.111 47.619 0.00 0.00 39.53 4.85
1604 1645 8.839343 CAATCATGAGTTGCCAACATATACTAA 58.161 33.333 10.69 0.00 0.00 2.24
1703 1751 2.413837 ACATTGTTCACACTACTCGCC 58.586 47.619 0.00 0.00 0.00 5.54
1724 1772 1.136611 GTGTCTGACGTGATTTGCGAC 60.137 52.381 0.00 0.00 0.00 5.19
1726 1774 1.225475 CTGACGTGATTTGCGACGC 60.225 57.895 14.19 14.19 39.22 5.19
1753 1801 2.036217 CTGCACCAAGAATCAAGGCAAA 59.964 45.455 0.00 0.00 0.00 3.68
1754 1802 2.433604 TGCACCAAGAATCAAGGCAAAA 59.566 40.909 0.00 0.00 0.00 2.44
1755 1803 3.118482 TGCACCAAGAATCAAGGCAAAAA 60.118 39.130 0.00 0.00 0.00 1.94
1811 1859 2.908940 GGTGGCTGCTGTTGCACT 60.909 61.111 0.00 0.00 45.31 4.40
1812 1860 2.492773 GGTGGCTGCTGTTGCACTT 61.493 57.895 0.00 0.00 45.31 3.16
1813 1861 1.299620 GTGGCTGCTGTTGCACTTG 60.300 57.895 0.00 0.00 45.31 3.16
1814 1862 2.355481 GGCTGCTGTTGCACTTGC 60.355 61.111 0.00 0.00 45.31 4.01
1859 1921 9.717942 AGATTATAGTGATAGCATTTGGAACTC 57.282 33.333 0.00 0.00 0.00 3.01
1862 1924 5.184892 AGTGATAGCATTTGGAACTCCTT 57.815 39.130 0.00 0.00 36.82 3.36
1863 1925 5.574188 AGTGATAGCATTTGGAACTCCTTT 58.426 37.500 0.00 0.00 36.82 3.11
1866 1928 7.669722 AGTGATAGCATTTGGAACTCCTTTTTA 59.330 33.333 0.00 0.00 36.82 1.52
1871 1934 7.966812 AGCATTTGGAACTCCTTTTTATTTCT 58.033 30.769 0.00 0.00 36.82 2.52
1935 1998 3.068448 AGCATGTGCACTTTGACATCAAA 59.932 39.130 19.41 6.85 45.16 2.69
1947 2010 5.518848 TTGACATCAAAGATTGCAACACT 57.481 34.783 0.00 1.10 32.11 3.55
1948 2011 4.862350 TGACATCAAAGATTGCAACACTG 58.138 39.130 0.00 0.00 0.00 3.66
1951 2014 4.338964 ACATCAAAGATTGCAACACTGTGA 59.661 37.500 22.29 22.29 33.33 3.58
1952 2015 5.010314 ACATCAAAGATTGCAACACTGTGAT 59.990 36.000 23.94 23.94 38.61 3.06
1955 2018 6.845302 TCAAAGATTGCAACACTGTGATATC 58.155 36.000 18.54 3.17 0.00 1.63
1956 2019 5.824904 AAGATTGCAACACTGTGATATCC 57.175 39.130 15.86 0.00 0.00 2.59
1958 2021 3.431673 TTGCAACACTGTGATATCCCA 57.568 42.857 15.86 0.00 0.00 4.37
1959 2022 2.989909 TGCAACACTGTGATATCCCAG 58.010 47.619 15.86 13.02 34.82 4.45
1963 2028 4.132336 CAACACTGTGATATCCCAGATGG 58.868 47.826 20.39 11.84 32.93 3.51
1974 2039 1.760527 CCAGATGGGTGTGTGGTCA 59.239 57.895 0.00 0.00 0.00 4.02
1975 2040 0.329261 CCAGATGGGTGTGTGGTCAT 59.671 55.000 0.00 0.00 0.00 3.06
1978 2043 3.371917 CCAGATGGGTGTGTGGTCATATT 60.372 47.826 0.00 0.00 0.00 1.28
1980 2045 4.816385 CAGATGGGTGTGTGGTCATATTAC 59.184 45.833 0.00 0.00 0.00 1.89
1988 2053 3.869246 GTGTGGTCATATTACGAACAGGG 59.131 47.826 0.00 0.00 28.65 4.45
1999 2064 1.254026 CGAACAGGGTGAGGACACTA 58.746 55.000 0.00 0.00 45.32 2.74
2000 2065 1.616865 CGAACAGGGTGAGGACACTAA 59.383 52.381 0.00 0.00 45.32 2.24
2001 2066 2.036733 CGAACAGGGTGAGGACACTAAA 59.963 50.000 0.00 0.00 45.32 1.85
2002 2067 3.306780 CGAACAGGGTGAGGACACTAAAT 60.307 47.826 0.00 0.00 45.32 1.40
2003 2068 3.983044 ACAGGGTGAGGACACTAAATC 57.017 47.619 0.00 0.00 45.32 2.17
2004 2069 3.521727 ACAGGGTGAGGACACTAAATCT 58.478 45.455 0.00 0.00 45.32 2.40
2005 2070 3.910627 ACAGGGTGAGGACACTAAATCTT 59.089 43.478 0.00 0.00 45.32 2.40
2006 2071 4.020128 ACAGGGTGAGGACACTAAATCTTC 60.020 45.833 0.00 0.00 45.32 2.87
2007 2072 4.020218 CAGGGTGAGGACACTAAATCTTCA 60.020 45.833 0.00 0.00 45.32 3.02
2008 2073 4.785376 AGGGTGAGGACACTAAATCTTCAT 59.215 41.667 0.00 0.00 45.32 2.57
2009 2074 5.104735 AGGGTGAGGACACTAAATCTTCATC 60.105 44.000 0.00 0.00 45.32 2.92
2010 2075 5.104735 GGGTGAGGACACTAAATCTTCATCT 60.105 44.000 0.00 0.00 45.32 2.90
2011 2076 6.098409 GGGTGAGGACACTAAATCTTCATCTA 59.902 42.308 0.00 0.00 45.32 1.98
2012 2077 7.364762 GGGTGAGGACACTAAATCTTCATCTAA 60.365 40.741 0.00 0.00 45.32 2.10
2013 2078 8.041323 GGTGAGGACACTAAATCTTCATCTAAA 58.959 37.037 0.00 0.00 45.32 1.85
2014 2079 9.436957 GTGAGGACACTAAATCTTCATCTAAAA 57.563 33.333 0.00 0.00 42.99 1.52
2015 2080 9.436957 TGAGGACACTAAATCTTCATCTAAAAC 57.563 33.333 0.00 0.00 28.10 2.43
2016 2081 9.436957 GAGGACACTAAATCTTCATCTAAAACA 57.563 33.333 0.00 0.00 0.00 2.83
2017 2082 9.965902 AGGACACTAAATCTTCATCTAAAACAT 57.034 29.630 0.00 0.00 0.00 2.71
2018 2083 9.994432 GGACACTAAATCTTCATCTAAAACATG 57.006 33.333 0.00 0.00 0.00 3.21
2019 2084 9.994432 GACACTAAATCTTCATCTAAAACATGG 57.006 33.333 0.00 0.00 0.00 3.66
2020 2085 9.520515 ACACTAAATCTTCATCTAAAACATGGT 57.479 29.630 0.00 0.00 0.00 3.55
2021 2086 9.994432 CACTAAATCTTCATCTAAAACATGGTC 57.006 33.333 0.00 0.00 0.00 4.02
2022 2087 9.739276 ACTAAATCTTCATCTAAAACATGGTCA 57.261 29.630 0.00 0.00 0.00 4.02
2023 2088 9.994432 CTAAATCTTCATCTAAAACATGGTCAC 57.006 33.333 0.00 0.00 0.00 3.67
2024 2089 8.641498 AAATCTTCATCTAAAACATGGTCACT 57.359 30.769 0.00 0.00 0.00 3.41
2025 2090 9.739276 AAATCTTCATCTAAAACATGGTCACTA 57.261 29.630 0.00 0.00 0.00 2.74
2026 2091 9.739276 AATCTTCATCTAAAACATGGTCACTAA 57.261 29.630 0.00 0.00 0.00 2.24
2027 2092 8.547967 TCTTCATCTAAAACATGGTCACTAAC 57.452 34.615 0.00 0.00 0.00 2.34
2028 2093 8.154203 TCTTCATCTAAAACATGGTCACTAACA 58.846 33.333 0.00 0.00 0.00 2.41
2051 2116 4.963318 TCAGTTCAACAGTCCTGAAGAT 57.037 40.909 0.40 0.00 33.56 2.40
2061 2126 7.786943 TCAACAGTCCTGAAGATAAGGATAGAT 59.213 37.037 0.40 0.00 45.47 1.98
2062 2127 7.775053 ACAGTCCTGAAGATAAGGATAGATC 57.225 40.000 0.40 0.00 45.47 2.75
2063 2128 7.534852 ACAGTCCTGAAGATAAGGATAGATCT 58.465 38.462 0.00 0.00 45.47 2.75
2068 2133 9.883293 TCCTGAAGATAAGGATAGATCTTTACA 57.117 33.333 0.00 0.00 41.43 2.41
2071 2136 9.661954 TGAAGATAAGGATAGATCTTTACAGGT 57.338 33.333 0.00 0.00 41.43 4.00
2075 2140 9.843334 GATAAGGATAGATCTTTACAGGTTACG 57.157 37.037 0.00 0.00 32.27 3.18
2076 2141 7.657023 AAGGATAGATCTTTACAGGTTACGT 57.343 36.000 0.00 0.00 0.00 3.57
2077 2142 7.274603 AGGATAGATCTTTACAGGTTACGTC 57.725 40.000 0.00 0.00 0.00 4.34
2078 2143 6.017275 AGGATAGATCTTTACAGGTTACGTCG 60.017 42.308 0.00 0.00 0.00 5.12
2079 2144 3.767278 AGATCTTTACAGGTTACGTCGC 58.233 45.455 0.00 0.00 0.00 5.19
2080 2145 3.442977 AGATCTTTACAGGTTACGTCGCT 59.557 43.478 0.00 0.00 0.00 4.93
2081 2146 2.937591 TCTTTACAGGTTACGTCGCTG 58.062 47.619 0.00 0.00 0.00 5.18
2082 2147 2.294233 TCTTTACAGGTTACGTCGCTGT 59.706 45.455 8.08 8.08 0.00 4.40
2083 2148 3.501828 TCTTTACAGGTTACGTCGCTGTA 59.498 43.478 0.00 6.41 0.00 2.74
2084 2149 4.156556 TCTTTACAGGTTACGTCGCTGTAT 59.843 41.667 10.09 0.00 31.72 2.29
2085 2150 4.439305 TTACAGGTTACGTCGCTGTATT 57.561 40.909 10.09 0.00 31.72 1.89
2086 2151 2.602878 ACAGGTTACGTCGCTGTATTG 58.397 47.619 0.00 0.00 0.00 1.90
2087 2152 2.029649 ACAGGTTACGTCGCTGTATTGT 60.030 45.455 0.00 0.00 0.00 2.71
2088 2153 3.191162 ACAGGTTACGTCGCTGTATTGTA 59.809 43.478 0.00 0.00 0.00 2.41
2089 2154 3.545078 CAGGTTACGTCGCTGTATTGTAC 59.455 47.826 0.00 0.00 0.00 2.90
2090 2155 3.441572 AGGTTACGTCGCTGTATTGTACT 59.558 43.478 0.00 0.00 0.00 2.73
2091 2156 3.788163 GGTTACGTCGCTGTATTGTACTC 59.212 47.826 0.00 0.00 0.00 2.59
2092 2157 2.556534 ACGTCGCTGTATTGTACTCC 57.443 50.000 0.00 0.00 0.00 3.85
2093 2158 1.133790 ACGTCGCTGTATTGTACTCCC 59.866 52.381 0.00 0.00 0.00 4.30
2094 2159 1.404391 CGTCGCTGTATTGTACTCCCT 59.596 52.381 0.00 0.00 0.00 4.20
2095 2160 2.541178 CGTCGCTGTATTGTACTCCCTC 60.541 54.545 0.00 0.00 0.00 4.30
2096 2161 2.029623 TCGCTGTATTGTACTCCCTCC 58.970 52.381 0.00 0.00 0.00 4.30
2097 2162 1.269102 CGCTGTATTGTACTCCCTCCG 60.269 57.143 0.00 0.00 0.00 4.63
2098 2163 1.755380 GCTGTATTGTACTCCCTCCGT 59.245 52.381 0.00 0.00 0.00 4.69
2099 2164 2.167900 GCTGTATTGTACTCCCTCCGTT 59.832 50.000 0.00 0.00 0.00 4.44
2100 2165 3.737355 GCTGTATTGTACTCCCTCCGTTC 60.737 52.174 0.00 0.00 0.00 3.95
2101 2166 2.762327 TGTATTGTACTCCCTCCGTTCC 59.238 50.000 0.00 0.00 0.00 3.62
2102 2167 2.249309 ATTGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
2103 2168 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
2104 2169 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2105 2170 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2106 2171 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2107 2172 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2108 2173 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2109 2174 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
2110 2175 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2111 2176 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2112 2177 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2113 2178 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2114 2179 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2115 2180 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2116 2181 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2117 2182 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2118 2183 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2119 2184 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2120 2185 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2121 2186 8.336080 CCGTTCCTAAATATTTGTCTTTCTAGC 58.664 37.037 11.05 0.00 0.00 3.42
2122 2187 8.879759 CGTTCCTAAATATTTGTCTTTCTAGCA 58.120 33.333 11.05 0.00 0.00 3.49
2132 2197 8.767478 ATTTGTCTTTCTAGCATTTCAAATGG 57.233 30.769 12.14 0.00 34.47 3.16
2133 2198 7.523293 TTGTCTTTCTAGCATTTCAAATGGA 57.477 32.000 12.14 0.00 0.00 3.41
2134 2199 6.913170 TGTCTTTCTAGCATTTCAAATGGAC 58.087 36.000 12.14 8.87 0.00 4.02
2135 2200 6.716628 TGTCTTTCTAGCATTTCAAATGGACT 59.283 34.615 12.14 4.12 0.00 3.85
2136 2201 7.882791 TGTCTTTCTAGCATTTCAAATGGACTA 59.117 33.333 12.14 5.03 0.00 2.59
2137 2202 8.178313 GTCTTTCTAGCATTTCAAATGGACTAC 58.822 37.037 12.14 0.00 0.00 2.73
2138 2203 7.336931 TCTTTCTAGCATTTCAAATGGACTACC 59.663 37.037 12.14 0.00 0.00 3.18
2147 2212 4.121906 TGGACTACCACATGCGGA 57.878 55.556 6.80 0.00 41.77 5.54
2148 2213 2.602890 TGGACTACCACATGCGGAT 58.397 52.632 6.80 0.00 41.77 4.18
2149 2214 0.177836 TGGACTACCACATGCGGATG 59.822 55.000 16.07 16.07 41.77 3.51
2150 2215 0.178068 GGACTACCACATGCGGATGT 59.822 55.000 17.64 17.64 44.08 3.06
2151 2216 1.411246 GGACTACCACATGCGGATGTA 59.589 52.381 22.75 6.53 41.12 2.29
2152 2217 2.037251 GGACTACCACATGCGGATGTAT 59.963 50.000 22.75 15.65 41.12 2.29
2153 2218 3.059884 GACTACCACATGCGGATGTATG 58.940 50.000 22.75 17.97 41.12 2.39
2164 2229 7.601073 CATGCGGATGTATGTAGACATATTT 57.399 36.000 9.01 0.00 40.18 1.40
2165 2230 8.032952 CATGCGGATGTATGTAGACATATTTT 57.967 34.615 9.01 0.00 40.18 1.82
2166 2231 9.150348 CATGCGGATGTATGTAGACATATTTTA 57.850 33.333 9.01 0.00 40.18 1.52
2167 2232 9.719355 ATGCGGATGTATGTAGACATATTTTAA 57.281 29.630 5.69 0.00 40.18 1.52
2168 2233 9.549078 TGCGGATGTATGTAGACATATTTTAAA 57.451 29.630 5.69 0.00 40.18 1.52
2192 2257 6.791887 ATGTATATTCACTCATTTGCTCCG 57.208 37.500 0.00 0.00 0.00 4.63
2193 2258 5.670485 TGTATATTCACTCATTTGCTCCGT 58.330 37.500 0.00 0.00 0.00 4.69
2194 2259 5.753438 TGTATATTCACTCATTTGCTCCGTC 59.247 40.000 0.00 0.00 0.00 4.79
2195 2260 2.839486 TTCACTCATTTGCTCCGTCT 57.161 45.000 0.00 0.00 0.00 4.18
2196 2261 2.084610 TCACTCATTTGCTCCGTCTG 57.915 50.000 0.00 0.00 0.00 3.51
2197 2262 1.344438 TCACTCATTTGCTCCGTCTGT 59.656 47.619 0.00 0.00 0.00 3.41
2198 2263 2.560981 TCACTCATTTGCTCCGTCTGTA 59.439 45.455 0.00 0.00 0.00 2.74
2199 2264 2.926200 CACTCATTTGCTCCGTCTGTAG 59.074 50.000 0.00 0.00 0.00 2.74
2200 2265 2.563179 ACTCATTTGCTCCGTCTGTAGT 59.437 45.455 0.00 0.00 0.00 2.73
2201 2266 3.182967 CTCATTTGCTCCGTCTGTAGTC 58.817 50.000 0.00 0.00 0.00 2.59
2202 2267 2.560981 TCATTTGCTCCGTCTGTAGTCA 59.439 45.455 0.00 0.00 0.00 3.41
2203 2268 2.724977 TTTGCTCCGTCTGTAGTCAG 57.275 50.000 0.00 0.00 42.54 3.51
2204 2269 1.617322 TTGCTCCGTCTGTAGTCAGT 58.383 50.000 0.00 0.00 41.91 3.41
2205 2270 1.617322 TGCTCCGTCTGTAGTCAGTT 58.383 50.000 0.00 0.00 41.91 3.16
2206 2271 1.269723 TGCTCCGTCTGTAGTCAGTTG 59.730 52.381 0.00 0.00 41.91 3.16
2207 2272 1.269998 GCTCCGTCTGTAGTCAGTTGT 59.730 52.381 0.00 0.00 41.91 3.32
2208 2273 2.288273 GCTCCGTCTGTAGTCAGTTGTT 60.288 50.000 0.00 0.00 41.91 2.83
2209 2274 3.309388 CTCCGTCTGTAGTCAGTTGTTG 58.691 50.000 0.00 0.00 41.91 3.33
2210 2275 2.953648 TCCGTCTGTAGTCAGTTGTTGA 59.046 45.455 0.00 0.00 41.91 3.18
2211 2276 3.382227 TCCGTCTGTAGTCAGTTGTTGAA 59.618 43.478 0.00 0.00 41.91 2.69
2212 2277 4.116961 CCGTCTGTAGTCAGTTGTTGAAA 58.883 43.478 0.00 0.00 41.91 2.69
2213 2278 4.750098 CCGTCTGTAGTCAGTTGTTGAAAT 59.250 41.667 0.00 0.00 41.91 2.17
2214 2279 5.107453 CCGTCTGTAGTCAGTTGTTGAAATC 60.107 44.000 0.00 0.00 41.91 2.17
2215 2280 5.692204 CGTCTGTAGTCAGTTGTTGAAATCT 59.308 40.000 0.00 0.00 41.91 2.40
2216 2281 6.129062 CGTCTGTAGTCAGTTGTTGAAATCTC 60.129 42.308 0.00 0.00 41.91 2.75
2217 2282 6.926272 GTCTGTAGTCAGTTGTTGAAATCTCT 59.074 38.462 0.00 0.00 41.91 3.10
2218 2283 8.082852 GTCTGTAGTCAGTTGTTGAAATCTCTA 58.917 37.037 0.00 0.00 41.91 2.43
2219 2284 8.300286 TCTGTAGTCAGTTGTTGAAATCTCTAG 58.700 37.037 0.00 0.00 41.91 2.43
2220 2285 8.178313 TGTAGTCAGTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 37.61 2.43
2221 2286 8.638873 TGTAGTCAGTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 37.61 2.10
2222 2287 9.477484 GTAGTCAGTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 37.61 2.52
2223 2288 8.600449 AGTCAGTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 37.61 2.62
2224 2289 8.424918 AGTCAGTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 37.61 2.52
2225 2290 8.491950 GTCAGTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 37.61 3.01
2226 2291 8.204160 TCAGTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 31.34 3.41
2227 2292 8.830580 CAGTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2228 2293 9.396022 AGTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2241 2306 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2242 2307 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2243 2308 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2244 2309 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2245 2310 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2246 2311 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2247 2312 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2248 2313 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2249 2314 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2250 2315 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
2251 2316 8.591072 CAAATATTTAGGAACGGAGGGAGTATA 58.409 37.037 0.00 0.00 0.00 1.47
2252 2317 8.731591 AATATTTAGGAACGGAGGGAGTATAA 57.268 34.615 0.00 0.00 0.00 0.98
2253 2318 8.912614 ATATTTAGGAACGGAGGGAGTATAAT 57.087 34.615 0.00 0.00 0.00 1.28
2254 2319 6.661304 TTTAGGAACGGAGGGAGTATAATC 57.339 41.667 0.00 0.00 0.00 1.75
2255 2320 3.508426 AGGAACGGAGGGAGTATAATCC 58.492 50.000 10.85 10.85 38.76 3.01
2256 2321 3.142407 AGGAACGGAGGGAGTATAATCCT 59.858 47.826 18.20 5.18 39.50 3.24
2257 2322 3.902467 GGAACGGAGGGAGTATAATCCTT 59.098 47.826 18.20 11.44 39.50 3.36
2258 2323 5.082425 GGAACGGAGGGAGTATAATCCTTA 58.918 45.833 18.20 0.00 39.50 2.69
2259 2324 5.185442 GGAACGGAGGGAGTATAATCCTTAG 59.815 48.000 18.20 11.01 39.50 2.18
2260 2325 4.675038 ACGGAGGGAGTATAATCCTTAGG 58.325 47.826 18.20 8.93 39.50 2.69
2261 2326 4.356190 ACGGAGGGAGTATAATCCTTAGGA 59.644 45.833 18.20 2.37 39.50 2.94
2262 2327 5.162903 ACGGAGGGAGTATAATCCTTAGGAA 60.163 44.000 18.20 0.00 39.50 3.36
2263 2328 5.419471 CGGAGGGAGTATAATCCTTAGGAAG 59.581 48.000 18.20 1.68 39.50 3.46
2264 2329 6.563163 GGAGGGAGTATAATCCTTAGGAAGA 58.437 44.000 18.20 0.00 39.50 2.87
2265 2330 7.017531 GGAGGGAGTATAATCCTTAGGAAGAA 58.982 42.308 18.20 0.00 39.50 2.52
2266 2331 7.513091 GGAGGGAGTATAATCCTTAGGAAGAAA 59.487 40.741 18.20 0.00 39.50 2.52
2267 2332 9.106977 GAGGGAGTATAATCCTTAGGAAGAAAT 57.893 37.037 18.20 0.00 39.50 2.17
2268 2333 9.106977 AGGGAGTATAATCCTTAGGAAGAAATC 57.893 37.037 18.20 0.41 39.50 2.17
2269 2334 8.881262 GGGAGTATAATCCTTAGGAAGAAATCA 58.119 37.037 18.20 0.00 39.50 2.57
2270 2335 9.936759 GGAGTATAATCCTTAGGAAGAAATCAG 57.063 37.037 12.01 0.00 34.34 2.90
2275 2340 7.747809 AATCCTTAGGAAGAAATCAGAGACT 57.252 36.000 4.56 0.00 34.34 3.24
2276 2341 8.846423 AATCCTTAGGAAGAAATCAGAGACTA 57.154 34.615 4.56 0.00 34.34 2.59
2277 2342 7.648039 TCCTTAGGAAGAAATCAGAGACTAC 57.352 40.000 0.00 0.00 0.00 2.73
2278 2343 6.319152 TCCTTAGGAAGAAATCAGAGACTACG 59.681 42.308 0.00 0.00 0.00 3.51
2279 2344 6.319152 CCTTAGGAAGAAATCAGAGACTACGA 59.681 42.308 0.00 0.00 0.00 3.43
2280 2345 5.570234 AGGAAGAAATCAGAGACTACGAC 57.430 43.478 0.00 0.00 0.00 4.34
2281 2346 5.010933 AGGAAGAAATCAGAGACTACGACA 58.989 41.667 0.00 0.00 0.00 4.35
2282 2347 5.477291 AGGAAGAAATCAGAGACTACGACAA 59.523 40.000 0.00 0.00 0.00 3.18
2283 2348 5.802956 GGAAGAAATCAGAGACTACGACAAG 59.197 44.000 0.00 0.00 0.00 3.16
2284 2349 4.739195 AGAAATCAGAGACTACGACAAGC 58.261 43.478 0.00 0.00 0.00 4.01
2285 2350 4.461081 AGAAATCAGAGACTACGACAAGCT 59.539 41.667 0.00 0.00 0.00 3.74
2286 2351 3.773860 ATCAGAGACTACGACAAGCTG 57.226 47.619 0.00 0.00 0.00 4.24
2287 2352 2.779506 TCAGAGACTACGACAAGCTGA 58.220 47.619 0.00 0.00 0.00 4.26
2288 2353 3.348119 TCAGAGACTACGACAAGCTGAT 58.652 45.455 0.00 0.00 0.00 2.90
2289 2354 4.514401 TCAGAGACTACGACAAGCTGATA 58.486 43.478 0.00 0.00 0.00 2.15
2290 2355 4.941873 TCAGAGACTACGACAAGCTGATAA 59.058 41.667 0.00 0.00 0.00 1.75
2291 2356 5.065346 TCAGAGACTACGACAAGCTGATAAG 59.935 44.000 0.00 0.00 0.00 1.73
2292 2357 4.944930 AGAGACTACGACAAGCTGATAAGT 59.055 41.667 0.00 0.00 0.00 2.24
2293 2358 6.037281 CAGAGACTACGACAAGCTGATAAGTA 59.963 42.308 0.00 0.00 0.00 2.24
2294 2359 6.598457 AGAGACTACGACAAGCTGATAAGTAA 59.402 38.462 0.00 0.00 0.00 2.24
2295 2360 7.283580 AGAGACTACGACAAGCTGATAAGTAAT 59.716 37.037 0.00 0.00 0.00 1.89
2296 2361 8.447924 AGACTACGACAAGCTGATAAGTAATA 57.552 34.615 0.00 0.00 0.00 0.98
2297 2362 8.561212 AGACTACGACAAGCTGATAAGTAATAG 58.439 37.037 0.00 0.00 0.00 1.73
2298 2363 8.223177 ACTACGACAAGCTGATAAGTAATAGT 57.777 34.615 0.00 0.00 0.00 2.12
2299 2364 9.334947 ACTACGACAAGCTGATAAGTAATAGTA 57.665 33.333 0.00 0.00 0.00 1.82
2300 2365 9.596677 CTACGACAAGCTGATAAGTAATAGTAC 57.403 37.037 0.00 0.00 0.00 2.73
2301 2366 8.223177 ACGACAAGCTGATAAGTAATAGTACT 57.777 34.615 0.00 0.00 42.66 2.73
2302 2367 9.334947 ACGACAAGCTGATAAGTAATAGTACTA 57.665 33.333 4.77 4.77 39.79 1.82
2303 2368 9.814507 CGACAAGCTGATAAGTAATAGTACTAG 57.185 37.037 8.85 0.00 39.79 2.57
2304 2369 9.615295 GACAAGCTGATAAGTAATAGTACTAGC 57.385 37.037 12.68 12.68 39.79 3.42
2305 2370 9.357161 ACAAGCTGATAAGTAATAGTACTAGCT 57.643 33.333 15.99 15.99 44.77 3.32
2343 2408 3.189287 GCTTAAGTGGAGTTGTGATGGTG 59.811 47.826 4.02 0.00 0.00 4.17
2347 2412 2.027745 AGTGGAGTTGTGATGGTGCTAG 60.028 50.000 0.00 0.00 0.00 3.42
2348 2413 2.028112 GTGGAGTTGTGATGGTGCTAGA 60.028 50.000 0.00 0.00 0.00 2.43
2349 2414 2.028112 TGGAGTTGTGATGGTGCTAGAC 60.028 50.000 0.00 0.00 0.00 2.59
2350 2415 2.622436 GAGTTGTGATGGTGCTAGACC 58.378 52.381 0.00 0.00 46.37 3.85
2360 2425 2.877335 GGTGCTAGACCAAGTTCTACG 58.123 52.381 0.00 0.00 45.34 3.51
2361 2426 2.490903 GGTGCTAGACCAAGTTCTACGA 59.509 50.000 0.00 0.00 45.34 3.43
2362 2427 3.057033 GGTGCTAGACCAAGTTCTACGAA 60.057 47.826 0.00 0.00 45.34 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 4.215827 GGAGGACATACACGGTAGTATCAG 59.784 50.000 0.00 0.00 32.56 2.90
114 115 5.189145 GTGATTAGGTTTTAGAGGTGGAGGA 59.811 44.000 0.00 0.00 0.00 3.71
180 182 2.799978 GCACATGGCTTGGTAAAAACAC 59.200 45.455 5.31 0.00 40.25 3.32
250 252 4.486090 GCATATCGTTCGAGGATGTACAT 58.514 43.478 8.43 8.43 0.00 2.29
317 319 5.333299 TGCTTGCTCGTCCTTTATAAGTA 57.667 39.130 0.00 0.00 0.00 2.24
451 453 0.979709 TGCCAGAGGGAGGACATCTG 60.980 60.000 2.34 2.34 40.13 2.90
521 523 8.359642 TGGTCTCATTTGTTTTTAGGATTTCTG 58.640 33.333 0.00 0.00 0.00 3.02
530 532 8.243961 TCTTGGATTGGTCTCATTTGTTTTTA 57.756 30.769 0.00 0.00 0.00 1.52
531 533 7.123355 TCTTGGATTGGTCTCATTTGTTTTT 57.877 32.000 0.00 0.00 0.00 1.94
533 535 5.279156 GCTCTTGGATTGGTCTCATTTGTTT 60.279 40.000 0.00 0.00 0.00 2.83
534 536 4.219288 GCTCTTGGATTGGTCTCATTTGTT 59.781 41.667 0.00 0.00 0.00 2.83
535 537 3.760684 GCTCTTGGATTGGTCTCATTTGT 59.239 43.478 0.00 0.00 0.00 2.83
536 538 4.015084 AGCTCTTGGATTGGTCTCATTTG 58.985 43.478 0.00 0.00 0.00 2.32
539 559 4.384647 GGTTAGCTCTTGGATTGGTCTCAT 60.385 45.833 0.00 0.00 0.00 2.90
543 563 2.239907 AGGGTTAGCTCTTGGATTGGTC 59.760 50.000 0.00 0.00 0.00 4.02
547 567 2.188817 ACGAGGGTTAGCTCTTGGATT 58.811 47.619 0.00 0.00 30.61 3.01
548 568 1.867363 ACGAGGGTTAGCTCTTGGAT 58.133 50.000 0.00 0.00 30.61 3.41
549 569 1.275291 CAACGAGGGTTAGCTCTTGGA 59.725 52.381 0.00 0.00 33.72 3.53
551 571 2.288825 TGTCAACGAGGGTTAGCTCTTG 60.289 50.000 0.00 0.00 33.72 3.02
556 576 5.813080 AATAAATGTCAACGAGGGTTAGC 57.187 39.130 0.00 0.00 33.72 3.09
569 589 9.865484 GCGGAGTTTCTTCTATAAATAAATGTC 57.135 33.333 0.00 0.00 0.00 3.06
572 592 8.882415 TCGCGGAGTTTCTTCTATAAATAAAT 57.118 30.769 6.13 0.00 0.00 1.40
574 594 6.420008 GCTCGCGGAGTTTCTTCTATAAATAA 59.580 38.462 6.13 0.00 31.39 1.40
575 595 5.919141 GCTCGCGGAGTTTCTTCTATAAATA 59.081 40.000 6.13 0.00 31.39 1.40
577 597 4.110482 GCTCGCGGAGTTTCTTCTATAAA 58.890 43.478 6.13 0.00 31.39 1.40
578 598 3.129813 TGCTCGCGGAGTTTCTTCTATAA 59.870 43.478 6.13 0.00 31.39 0.98
579 599 2.686405 TGCTCGCGGAGTTTCTTCTATA 59.314 45.455 6.13 0.00 31.39 1.31
580 600 1.476891 TGCTCGCGGAGTTTCTTCTAT 59.523 47.619 6.13 0.00 31.39 1.98
581 601 0.885879 TGCTCGCGGAGTTTCTTCTA 59.114 50.000 6.13 0.00 31.39 2.10
582 602 0.667792 GTGCTCGCGGAGTTTCTTCT 60.668 55.000 6.13 0.00 31.39 2.85
584 604 1.668151 GGTGCTCGCGGAGTTTCTT 60.668 57.895 6.13 0.00 31.39 2.52
586 606 2.357034 TGGTGCTCGCGGAGTTTC 60.357 61.111 6.13 0.00 31.39 2.78
595 615 3.281751 CTTGAACGCGTGGTGCTCG 62.282 63.158 14.98 0.00 43.27 5.03
596 616 2.551270 CTTGAACGCGTGGTGCTC 59.449 61.111 14.98 6.74 43.27 4.26
597 617 3.649986 GCTTGAACGCGTGGTGCT 61.650 61.111 14.98 0.00 43.27 4.40
598 618 3.649986 AGCTTGAACGCGTGGTGC 61.650 61.111 14.98 15.38 41.47 5.01
599 619 2.249309 CAGCTTGAACGCGTGGTG 59.751 61.111 14.98 12.70 34.40 4.17
600 620 2.972505 CCAGCTTGAACGCGTGGT 60.973 61.111 14.98 1.96 34.40 4.16
601 621 3.726517 CCCAGCTTGAACGCGTGG 61.727 66.667 14.98 7.74 34.40 4.94
602 622 2.664851 TCCCAGCTTGAACGCGTG 60.665 61.111 14.98 0.00 34.40 5.34
603 623 2.660258 AAGTCCCAGCTTGAACGCGT 62.660 55.000 5.58 5.58 34.40 6.01
604 624 1.961277 AAGTCCCAGCTTGAACGCG 60.961 57.895 3.53 3.53 34.40 6.01
605 625 1.576421 CAAGTCCCAGCTTGAACGC 59.424 57.895 0.00 0.00 46.34 4.84
610 630 1.151668 CGAGTTCAAGTCCCAGCTTG 58.848 55.000 0.00 0.00 45.18 4.01
611 631 0.035458 CCGAGTTCAAGTCCCAGCTT 59.965 55.000 0.00 0.00 0.00 3.74
612 632 1.674057 CCGAGTTCAAGTCCCAGCT 59.326 57.895 0.00 0.00 0.00 4.24
613 633 1.376037 CCCGAGTTCAAGTCCCAGC 60.376 63.158 0.00 0.00 0.00 4.85
614 634 0.320771 CACCCGAGTTCAAGTCCCAG 60.321 60.000 0.00 0.00 0.00 4.45
615 635 1.752198 CACCCGAGTTCAAGTCCCA 59.248 57.895 0.00 0.00 0.00 4.37
616 636 1.003718 CCACCCGAGTTCAAGTCCC 60.004 63.158 0.00 0.00 0.00 4.46
617 637 1.003718 CCCACCCGAGTTCAAGTCC 60.004 63.158 0.00 0.00 0.00 3.85
618 638 1.671379 GCCCACCCGAGTTCAAGTC 60.671 63.158 0.00 0.00 0.00 3.01
619 639 2.147387 AGCCCACCCGAGTTCAAGT 61.147 57.895 0.00 0.00 0.00 3.16
620 640 1.672356 CAGCCCACCCGAGTTCAAG 60.672 63.158 0.00 0.00 0.00 3.02
621 641 2.429930 CAGCCCACCCGAGTTCAA 59.570 61.111 0.00 0.00 0.00 2.69
622 642 3.636231 CCAGCCCACCCGAGTTCA 61.636 66.667 0.00 0.00 0.00 3.18
634 654 4.740822 AATCCACCGGTGCCAGCC 62.741 66.667 29.75 0.00 0.00 4.85
635 655 3.443045 CAATCCACCGGTGCCAGC 61.443 66.667 29.75 0.00 0.00 4.85
636 656 1.077501 ATCAATCCACCGGTGCCAG 60.078 57.895 29.75 15.95 0.00 4.85
663 683 3.688673 CCACACAAAATGCAACCTTTGTT 59.311 39.130 17.47 9.85 41.77 2.83
703 723 1.153958 GCTGTTGCTGCGGGAATTC 60.154 57.895 1.67 0.00 36.03 2.17
711 731 1.203065 GAAAGTGTTGCTGTTGCTGC 58.797 50.000 0.00 0.00 40.48 5.25
768 788 1.673923 GCCTCATTTGCTGGCCTTTTC 60.674 52.381 3.32 0.00 40.71 2.29
862 882 4.224609 GGGGATGGGATGGGGTGC 62.225 72.222 0.00 0.00 0.00 5.01
890 910 2.199236 GGAGGTTATTACGGTTGCGAG 58.801 52.381 0.00 0.00 0.00 5.03
893 913 2.558378 GAGGGAGGTTATTACGGTTGC 58.442 52.381 0.00 0.00 0.00 4.17
911 931 2.635427 GAGGCTATTTGTAGGGGAGGAG 59.365 54.545 0.00 0.00 0.00 3.69
912 932 2.690840 GAGGCTATTTGTAGGGGAGGA 58.309 52.381 0.00 0.00 0.00 3.71
913 933 1.700186 GGAGGCTATTTGTAGGGGAGG 59.300 57.143 0.00 0.00 0.00 4.30
914 934 1.700186 GGGAGGCTATTTGTAGGGGAG 59.300 57.143 0.00 0.00 0.00 4.30
961 989 3.046087 CTCTGTGCCGTGCTGTGG 61.046 66.667 0.00 0.00 0.00 4.17
966 994 1.717937 CTATTGCTCTGTGCCGTGC 59.282 57.895 0.00 0.00 42.00 5.34
970 998 2.149578 CTATGGCTATTGCTCTGTGCC 58.850 52.381 0.00 0.00 43.49 5.01
1014 1042 1.473965 CCACAGCACTCACACTTGACT 60.474 52.381 0.00 0.00 0.00 3.41
1079 1107 2.103042 CACTGGCCGTAGAAGCTGC 61.103 63.158 0.00 0.00 0.00 5.25
1302 1333 1.153549 GCCGTACTTGCTGGAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
1303 1334 1.911269 TGCCGTACTTGCTGGAGGA 60.911 57.895 5.93 0.00 0.00 3.71
1304 1335 1.741770 GTGCCGTACTTGCTGGAGG 60.742 63.158 5.93 0.00 0.00 4.30
1305 1336 1.016130 CAGTGCCGTACTTGCTGGAG 61.016 60.000 5.93 0.00 37.60 3.86
1306 1337 1.005037 CAGTGCCGTACTTGCTGGA 60.005 57.895 5.93 0.00 37.60 3.86
1307 1338 2.680913 GCAGTGCCGTACTTGCTGG 61.681 63.158 2.85 0.00 37.60 4.85
1310 1341 4.445545 GCGCAGTGCCGTACTTGC 62.446 66.667 10.11 0.83 37.60 4.01
1367 1402 6.455360 ACAAGCCATAGAATTAATGGTGTG 57.545 37.500 16.75 16.04 44.87 3.82
1400 1437 4.067896 CAAGCCTGAGAAAAGCACTAGAA 58.932 43.478 0.00 0.00 0.00 2.10
1401 1438 3.324846 TCAAGCCTGAGAAAAGCACTAGA 59.675 43.478 0.00 0.00 0.00 2.43
1495 1532 9.736023 ATTAGCATCCATTTCGAAGAAATTTAC 57.264 29.630 5.37 0.00 45.90 2.01
1519 1556 7.340232 TCATTTCAAAGCCAAGCACTATCTATT 59.660 33.333 0.00 0.00 0.00 1.73
1520 1557 6.830324 TCATTTCAAAGCCAAGCACTATCTAT 59.170 34.615 0.00 0.00 0.00 1.98
1521 1558 6.179756 TCATTTCAAAGCCAAGCACTATCTA 58.820 36.000 0.00 0.00 0.00 1.98
1522 1559 5.012239 TCATTTCAAAGCCAAGCACTATCT 58.988 37.500 0.00 0.00 0.00 1.98
1552 1589 8.102112 GCTTCTGTTAAAACGAACAAAAAGAAG 58.898 33.333 14.99 14.99 39.03 2.85
1726 1774 0.445436 GATTCTTGGTGCAGCGTCTG 59.555 55.000 11.91 1.33 34.12 3.51
1733 1781 1.702182 TTGCCTTGATTCTTGGTGCA 58.298 45.000 0.00 0.00 0.00 4.57
1767 1815 9.484806 AGCTTTAGGTAATACCGGTACATATAT 57.515 33.333 18.55 8.54 44.90 0.86
1768 1816 8.742777 CAGCTTTAGGTAATACCGGTACATATA 58.257 37.037 18.55 5.34 44.90 0.86
1769 1817 7.310237 CCAGCTTTAGGTAATACCGGTACATAT 60.310 40.741 18.55 6.37 44.90 1.78
1770 1818 6.015180 CCAGCTTTAGGTAATACCGGTACATA 60.015 42.308 18.55 10.65 44.90 2.29
1811 1859 4.817318 TGATCACAGTATAGTGGTGCAA 57.183 40.909 12.20 0.00 39.93 4.08
1812 1860 4.466015 TCTTGATCACAGTATAGTGGTGCA 59.534 41.667 12.20 2.29 39.93 4.57
1813 1861 5.011090 TCTTGATCACAGTATAGTGGTGC 57.989 43.478 12.20 0.00 39.93 5.01
1859 1921 7.679783 ACATTGGAAAGGGAGAAATAAAAAGG 58.320 34.615 0.00 0.00 0.00 3.11
1862 1924 8.147704 GTGAACATTGGAAAGGGAGAAATAAAA 58.852 33.333 0.00 0.00 0.00 1.52
1863 1925 7.288852 TGTGAACATTGGAAAGGGAGAAATAAA 59.711 33.333 0.00 0.00 0.00 1.40
1866 1928 5.147032 TGTGAACATTGGAAAGGGAGAAAT 58.853 37.500 0.00 0.00 0.00 2.17
1871 1934 7.339212 CACTATAATGTGAACATTGGAAAGGGA 59.661 37.037 17.00 0.00 45.34 4.20
1929 1992 4.862350 TCACAGTGTTGCAATCTTTGATG 58.138 39.130 0.59 0.00 0.00 3.07
1935 1998 4.202441 GGGATATCACAGTGTTGCAATCT 58.798 43.478 0.59 1.49 0.00 2.40
1936 1999 3.947196 TGGGATATCACAGTGTTGCAATC 59.053 43.478 2.71 0.00 0.00 2.67
1937 2000 3.949754 CTGGGATATCACAGTGTTGCAAT 59.050 43.478 24.44 0.00 42.29 3.56
1939 2002 2.989909 CTGGGATATCACAGTGTTGCA 58.010 47.619 24.44 0.00 42.29 4.08
1956 2019 0.329261 ATGACCACACACCCATCTGG 59.671 55.000 0.00 0.00 41.37 3.86
1958 2021 4.442893 CGTAATATGACCACACACCCATCT 60.443 45.833 0.00 0.00 0.00 2.90
1959 2022 3.807622 CGTAATATGACCACACACCCATC 59.192 47.826 0.00 0.00 0.00 3.51
1963 2028 4.247258 TGTTCGTAATATGACCACACACC 58.753 43.478 0.00 0.00 0.00 4.16
1974 2039 4.028131 TGTCCTCACCCTGTTCGTAATAT 58.972 43.478 0.00 0.00 0.00 1.28
1975 2040 3.194116 GTGTCCTCACCCTGTTCGTAATA 59.806 47.826 0.00 0.00 38.51 0.98
1978 2043 0.963962 GTGTCCTCACCCTGTTCGTA 59.036 55.000 0.00 0.00 38.51 3.43
1980 2045 1.254026 TAGTGTCCTCACCCTGTTCG 58.746 55.000 0.00 0.00 44.83 3.95
1988 2053 9.436957 TTTTAGATGAAGATTTAGTGTCCTCAC 57.563 33.333 0.00 0.00 44.15 3.51
1999 2064 8.641498 AGTGACCATGTTTTAGATGAAGATTT 57.359 30.769 0.00 0.00 0.00 2.17
2000 2065 9.739276 TTAGTGACCATGTTTTAGATGAAGATT 57.261 29.630 0.00 0.00 0.00 2.40
2001 2066 9.167311 GTTAGTGACCATGTTTTAGATGAAGAT 57.833 33.333 0.00 0.00 0.00 2.40
2002 2067 8.154203 TGTTAGTGACCATGTTTTAGATGAAGA 58.846 33.333 0.00 0.00 0.00 2.87
2003 2068 8.322906 TGTTAGTGACCATGTTTTAGATGAAG 57.677 34.615 0.00 0.00 0.00 3.02
2004 2069 8.684386 TTGTTAGTGACCATGTTTTAGATGAA 57.316 30.769 0.00 0.00 0.00 2.57
2005 2070 8.862325 ATTGTTAGTGACCATGTTTTAGATGA 57.138 30.769 0.00 0.00 0.00 2.92
2006 2071 8.729756 TGATTGTTAGTGACCATGTTTTAGATG 58.270 33.333 0.00 0.00 0.00 2.90
2007 2072 8.862325 TGATTGTTAGTGACCATGTTTTAGAT 57.138 30.769 0.00 0.00 0.00 1.98
2008 2073 7.936847 ACTGATTGTTAGTGACCATGTTTTAGA 59.063 33.333 0.00 0.00 0.00 2.10
2009 2074 8.099364 ACTGATTGTTAGTGACCATGTTTTAG 57.901 34.615 0.00 0.00 0.00 1.85
2010 2075 8.458573 AACTGATTGTTAGTGACCATGTTTTA 57.541 30.769 0.00 0.00 37.07 1.52
2011 2076 6.959639 ACTGATTGTTAGTGACCATGTTTT 57.040 33.333 0.00 0.00 0.00 2.43
2012 2077 6.545666 TGAACTGATTGTTAGTGACCATGTTT 59.454 34.615 0.00 0.00 39.30 2.83
2013 2078 6.061441 TGAACTGATTGTTAGTGACCATGTT 58.939 36.000 0.00 0.00 39.30 2.71
2014 2079 5.620206 TGAACTGATTGTTAGTGACCATGT 58.380 37.500 0.00 0.00 39.30 3.21
2015 2080 6.017192 TGTTGAACTGATTGTTAGTGACCATG 60.017 38.462 0.00 0.00 39.30 3.66
2016 2081 6.061441 TGTTGAACTGATTGTTAGTGACCAT 58.939 36.000 0.00 0.00 39.30 3.55
2017 2082 5.432645 TGTTGAACTGATTGTTAGTGACCA 58.567 37.500 0.00 0.00 39.30 4.02
2018 2083 5.527582 ACTGTTGAACTGATTGTTAGTGACC 59.472 40.000 9.24 0.00 39.30 4.02
2019 2084 6.292919 GGACTGTTGAACTGATTGTTAGTGAC 60.293 42.308 9.24 0.00 39.30 3.67
2020 2085 5.758296 GGACTGTTGAACTGATTGTTAGTGA 59.242 40.000 9.24 0.00 39.30 3.41
2021 2086 5.760253 AGGACTGTTGAACTGATTGTTAGTG 59.240 40.000 9.24 0.00 39.30 2.74
2022 2087 5.760253 CAGGACTGTTGAACTGATTGTTAGT 59.240 40.000 9.24 0.00 39.30 2.24
2023 2088 5.991606 TCAGGACTGTTGAACTGATTGTTAG 59.008 40.000 9.24 0.00 39.30 2.34
2024 2089 5.924356 TCAGGACTGTTGAACTGATTGTTA 58.076 37.500 9.24 0.00 39.30 2.41
2025 2090 4.780815 TCAGGACTGTTGAACTGATTGTT 58.219 39.130 9.24 0.00 42.38 2.83
2026 2091 4.422073 TCAGGACTGTTGAACTGATTGT 57.578 40.909 9.24 0.00 35.24 2.71
2027 2092 5.059161 TCTTCAGGACTGTTGAACTGATTG 58.941 41.667 9.24 4.60 39.46 2.67
2028 2093 5.296151 TCTTCAGGACTGTTGAACTGATT 57.704 39.130 9.24 0.00 39.46 2.57
2051 2116 8.757982 ACGTAACCTGTAAAGATCTATCCTTA 57.242 34.615 0.00 0.00 0.00 2.69
2061 2126 2.294233 ACAGCGACGTAACCTGTAAAGA 59.706 45.455 11.99 0.00 38.00 2.52
2062 2127 2.669364 ACAGCGACGTAACCTGTAAAG 58.331 47.619 11.99 0.00 38.00 1.85
2063 2128 2.798976 ACAGCGACGTAACCTGTAAA 57.201 45.000 11.99 0.00 38.00 2.01
2066 2131 2.029649 ACAATACAGCGACGTAACCTGT 60.030 45.455 16.29 16.29 42.10 4.00
2067 2132 2.602878 ACAATACAGCGACGTAACCTG 58.397 47.619 7.73 7.73 0.00 4.00
2068 2133 3.441572 AGTACAATACAGCGACGTAACCT 59.558 43.478 0.00 0.00 0.00 3.50
2069 2134 3.762779 AGTACAATACAGCGACGTAACC 58.237 45.455 0.00 0.00 0.00 2.85
2070 2135 3.788163 GGAGTACAATACAGCGACGTAAC 59.212 47.826 0.00 0.00 0.00 2.50
2071 2136 3.181497 GGGAGTACAATACAGCGACGTAA 60.181 47.826 0.00 0.00 0.00 3.18
2072 2137 2.355756 GGGAGTACAATACAGCGACGTA 59.644 50.000 0.00 0.00 0.00 3.57
2073 2138 1.133790 GGGAGTACAATACAGCGACGT 59.866 52.381 0.00 0.00 0.00 4.34
2074 2139 1.404391 AGGGAGTACAATACAGCGACG 59.596 52.381 0.00 0.00 0.00 5.12
2075 2140 2.223758 GGAGGGAGTACAATACAGCGAC 60.224 54.545 0.00 0.00 0.00 5.19
2076 2141 2.029623 GGAGGGAGTACAATACAGCGA 58.970 52.381 0.00 0.00 0.00 4.93
2077 2142 1.269102 CGGAGGGAGTACAATACAGCG 60.269 57.143 0.00 0.00 0.00 5.18
2078 2143 1.755380 ACGGAGGGAGTACAATACAGC 59.245 52.381 0.00 0.00 0.00 4.40
2079 2144 3.181478 GGAACGGAGGGAGTACAATACAG 60.181 52.174 0.00 0.00 0.00 2.74
2080 2145 2.762327 GGAACGGAGGGAGTACAATACA 59.238 50.000 0.00 0.00 0.00 2.29
2081 2146 3.029570 AGGAACGGAGGGAGTACAATAC 58.970 50.000 0.00 0.00 0.00 1.89
2082 2147 3.393426 AGGAACGGAGGGAGTACAATA 57.607 47.619 0.00 0.00 0.00 1.90
2083 2148 2.249309 AGGAACGGAGGGAGTACAAT 57.751 50.000 0.00 0.00 0.00 2.71
2084 2149 2.905415 TAGGAACGGAGGGAGTACAA 57.095 50.000 0.00 0.00 0.00 2.41
2085 2150 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
2086 2151 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
2087 2152 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2088 2153 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2089 2154 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2090 2155 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2091 2156 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2092 2157 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2093 2158 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2094 2159 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2095 2160 8.336080 GCTAGAAAGACAAATATTTAGGAACGG 58.664 37.037 0.00 0.00 0.00 4.44
2096 2161 8.879759 TGCTAGAAAGACAAATATTTAGGAACG 58.120 33.333 0.00 0.00 0.00 3.95
2106 2171 9.859427 CCATTTGAAATGCTAGAAAGACAAATA 57.141 29.630 12.26 0.00 35.79 1.40
2107 2172 8.587608 TCCATTTGAAATGCTAGAAAGACAAAT 58.412 29.630 12.26 0.00 37.24 2.32
2108 2173 7.867403 GTCCATTTGAAATGCTAGAAAGACAAA 59.133 33.333 12.26 0.00 0.00 2.83
2109 2174 7.231317 AGTCCATTTGAAATGCTAGAAAGACAA 59.769 33.333 12.26 0.00 0.00 3.18
2110 2175 6.716628 AGTCCATTTGAAATGCTAGAAAGACA 59.283 34.615 12.26 0.00 0.00 3.41
2111 2176 7.150783 AGTCCATTTGAAATGCTAGAAAGAC 57.849 36.000 12.26 11.49 0.00 3.01
2112 2177 7.336931 GGTAGTCCATTTGAAATGCTAGAAAGA 59.663 37.037 12.26 0.10 0.00 2.52
2113 2178 7.121168 TGGTAGTCCATTTGAAATGCTAGAAAG 59.879 37.037 12.26 0.00 39.03 2.62
2114 2179 6.945435 TGGTAGTCCATTTGAAATGCTAGAAA 59.055 34.615 12.26 0.00 39.03 2.52
2115 2180 6.374333 GTGGTAGTCCATTTGAAATGCTAGAA 59.626 38.462 12.26 0.00 46.20 2.10
2116 2181 5.880332 GTGGTAGTCCATTTGAAATGCTAGA 59.120 40.000 12.26 2.17 46.20 2.43
2117 2182 5.647658 TGTGGTAGTCCATTTGAAATGCTAG 59.352 40.000 12.26 0.00 46.20 3.42
2118 2183 5.565509 TGTGGTAGTCCATTTGAAATGCTA 58.434 37.500 12.26 6.75 46.20 3.49
2119 2184 4.406456 TGTGGTAGTCCATTTGAAATGCT 58.594 39.130 12.26 7.66 46.20 3.79
2120 2185 4.782019 TGTGGTAGTCCATTTGAAATGC 57.218 40.909 12.26 0.23 46.20 3.56
2121 2186 5.104374 GCATGTGGTAGTCCATTTGAAATG 58.896 41.667 10.84 10.84 46.20 2.32
2122 2187 4.142403 CGCATGTGGTAGTCCATTTGAAAT 60.142 41.667 0.00 0.00 46.20 2.17
2123 2188 3.190327 CGCATGTGGTAGTCCATTTGAAA 59.810 43.478 0.00 0.00 46.20 2.69
2124 2189 2.746904 CGCATGTGGTAGTCCATTTGAA 59.253 45.455 0.00 0.00 46.20 2.69
2125 2190 2.355197 CGCATGTGGTAGTCCATTTGA 58.645 47.619 0.00 0.00 46.20 2.69
2126 2191 1.401552 CCGCATGTGGTAGTCCATTTG 59.598 52.381 17.59 0.00 46.20 2.32
2127 2192 1.280710 TCCGCATGTGGTAGTCCATTT 59.719 47.619 24.28 0.00 46.20 2.32
2128 2193 0.908910 TCCGCATGTGGTAGTCCATT 59.091 50.000 24.28 0.00 46.20 3.16
2129 2194 1.131638 ATCCGCATGTGGTAGTCCAT 58.868 50.000 24.28 7.12 46.20 3.41
2130 2195 0.177836 CATCCGCATGTGGTAGTCCA 59.822 55.000 24.28 4.84 42.05 4.02
2131 2196 0.178068 ACATCCGCATGTGGTAGTCC 59.822 55.000 24.28 0.00 42.05 3.85
2132 2197 2.882927 TACATCCGCATGTGGTAGTC 57.117 50.000 24.28 0.00 43.54 2.59
2133 2198 2.434336 ACATACATCCGCATGTGGTAGT 59.566 45.455 24.28 23.12 43.54 2.73
2134 2199 3.111853 ACATACATCCGCATGTGGTAG 57.888 47.619 24.28 19.08 43.54 3.18
2135 2200 3.892588 TCTACATACATCCGCATGTGGTA 59.107 43.478 24.28 10.63 43.54 3.25
2136 2201 2.698274 TCTACATACATCCGCATGTGGT 59.302 45.455 24.28 8.62 43.54 4.16
2137 2202 3.059884 GTCTACATACATCCGCATGTGG 58.940 50.000 19.75 19.75 43.54 4.17
2138 2203 3.716601 TGTCTACATACATCCGCATGTG 58.283 45.455 1.14 0.00 43.54 3.21
2139 2204 4.607293 ATGTCTACATACATCCGCATGT 57.393 40.909 0.00 0.00 45.73 3.21
2140 2205 7.601073 AAATATGTCTACATACATCCGCATG 57.399 36.000 4.98 0.00 41.15 4.06
2141 2206 9.719355 TTAAAATATGTCTACATACATCCGCAT 57.281 29.630 4.98 0.00 41.15 4.73
2142 2207 9.549078 TTTAAAATATGTCTACATACATCCGCA 57.451 29.630 4.98 0.00 41.15 5.69
2166 2231 8.131100 CGGAGCAAATGAGTGAATATACATTTT 58.869 33.333 0.00 0.00 39.74 1.82
2167 2232 7.283127 ACGGAGCAAATGAGTGAATATACATTT 59.717 33.333 0.00 0.00 41.53 2.32
2168 2233 6.767902 ACGGAGCAAATGAGTGAATATACATT 59.232 34.615 0.00 0.00 34.99 2.71
2169 2234 6.291377 ACGGAGCAAATGAGTGAATATACAT 58.709 36.000 0.00 0.00 0.00 2.29
2170 2235 5.670485 ACGGAGCAAATGAGTGAATATACA 58.330 37.500 0.00 0.00 0.00 2.29
2171 2236 5.986135 AGACGGAGCAAATGAGTGAATATAC 59.014 40.000 0.00 0.00 0.00 1.47
2172 2237 5.985530 CAGACGGAGCAAATGAGTGAATATA 59.014 40.000 0.00 0.00 0.00 0.86
2173 2238 4.813161 CAGACGGAGCAAATGAGTGAATAT 59.187 41.667 0.00 0.00 0.00 1.28
2174 2239 4.183865 CAGACGGAGCAAATGAGTGAATA 58.816 43.478 0.00 0.00 0.00 1.75
2175 2240 3.005554 CAGACGGAGCAAATGAGTGAAT 58.994 45.455 0.00 0.00 0.00 2.57
2176 2241 2.224281 ACAGACGGAGCAAATGAGTGAA 60.224 45.455 0.00 0.00 0.00 3.18
2177 2242 1.344438 ACAGACGGAGCAAATGAGTGA 59.656 47.619 0.00 0.00 0.00 3.41
2178 2243 1.800805 ACAGACGGAGCAAATGAGTG 58.199 50.000 0.00 0.00 0.00 3.51
2179 2244 2.563179 ACTACAGACGGAGCAAATGAGT 59.437 45.455 0.00 0.00 0.00 3.41
2180 2245 3.182967 GACTACAGACGGAGCAAATGAG 58.817 50.000 0.00 0.00 0.00 2.90
2181 2246 2.560981 TGACTACAGACGGAGCAAATGA 59.439 45.455 0.00 0.00 0.00 2.57
2182 2247 2.926200 CTGACTACAGACGGAGCAAATG 59.074 50.000 0.00 0.00 46.03 2.32
2183 2248 2.563179 ACTGACTACAGACGGAGCAAAT 59.437 45.455 0.00 0.00 46.03 2.32
2184 2249 1.961394 ACTGACTACAGACGGAGCAAA 59.039 47.619 0.00 0.00 46.03 3.68
2185 2250 1.617322 ACTGACTACAGACGGAGCAA 58.383 50.000 0.00 0.00 46.03 3.91
2186 2251 1.269723 CAACTGACTACAGACGGAGCA 59.730 52.381 0.00 0.00 46.03 4.26
2187 2252 1.269998 ACAACTGACTACAGACGGAGC 59.730 52.381 0.00 0.00 46.03 4.70
2188 2253 3.004419 TCAACAACTGACTACAGACGGAG 59.996 47.826 0.00 0.00 46.03 4.63
2189 2254 2.953648 TCAACAACTGACTACAGACGGA 59.046 45.455 0.00 0.00 46.03 4.69
2190 2255 3.364889 TCAACAACTGACTACAGACGG 57.635 47.619 0.00 0.00 46.03 4.79
2191 2256 5.692204 AGATTTCAACAACTGACTACAGACG 59.308 40.000 0.00 0.00 46.03 4.18
2192 2257 6.926272 AGAGATTTCAACAACTGACTACAGAC 59.074 38.462 0.00 0.00 46.03 3.51
2193 2258 7.055667 AGAGATTTCAACAACTGACTACAGA 57.944 36.000 0.00 0.00 46.03 3.41
2195 2260 8.178313 TCTAGAGATTTCAACAACTGACTACA 57.822 34.615 0.00 0.00 32.21 2.74
2196 2261 9.477484 TTTCTAGAGATTTCAACAACTGACTAC 57.523 33.333 0.00 0.00 32.21 2.73
2197 2262 9.698309 CTTTCTAGAGATTTCAACAACTGACTA 57.302 33.333 0.00 0.00 32.21 2.59
2198 2263 8.424918 TCTTTCTAGAGATTTCAACAACTGACT 58.575 33.333 0.00 0.00 32.21 3.41
2199 2264 8.491950 GTCTTTCTAGAGATTTCAACAACTGAC 58.508 37.037 0.00 0.00 32.21 3.51
2200 2265 8.204160 TGTCTTTCTAGAGATTTCAACAACTGA 58.796 33.333 0.00 0.00 0.00 3.41
2201 2266 8.370493 TGTCTTTCTAGAGATTTCAACAACTG 57.630 34.615 0.00 0.00 0.00 3.16
2202 2267 8.964476 TTGTCTTTCTAGAGATTTCAACAACT 57.036 30.769 0.00 0.00 0.00 3.16
2215 2280 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2216 2281 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2217 2282 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2218 2283 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2219 2284 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2220 2285 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2221 2286 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2222 2287 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2223 2288 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2224 2289 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2225 2290 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2226 2291 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2227 2292 8.731591 TTATACTCCCTCCGTTCCTAAATATT 57.268 34.615 0.00 0.00 0.00 1.28
2228 2293 8.912614 ATTATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2229 2294 7.398332 GGATTATACTCCCTCCGTTCCTAAATA 59.602 40.741 0.00 0.00 0.00 1.40
2230 2295 6.212993 GGATTATACTCCCTCCGTTCCTAAAT 59.787 42.308 0.00 0.00 0.00 1.40
2231 2296 5.541484 GGATTATACTCCCTCCGTTCCTAAA 59.459 44.000 0.00 0.00 0.00 1.85
2232 2297 5.082425 GGATTATACTCCCTCCGTTCCTAA 58.918 45.833 0.00 0.00 0.00 2.69
2233 2298 4.356190 AGGATTATACTCCCTCCGTTCCTA 59.644 45.833 5.53 0.00 35.79 2.94
2234 2299 3.142407 AGGATTATACTCCCTCCGTTCCT 59.858 47.826 5.53 0.00 35.79 3.36
2235 2300 3.508426 AGGATTATACTCCCTCCGTTCC 58.492 50.000 5.53 0.00 35.79 3.62
2236 2301 5.185442 CCTAAGGATTATACTCCCTCCGTTC 59.815 48.000 5.53 0.00 35.79 3.95
2237 2302 5.085219 CCTAAGGATTATACTCCCTCCGTT 58.915 45.833 5.53 0.00 35.79 4.44
2238 2303 4.356190 TCCTAAGGATTATACTCCCTCCGT 59.644 45.833 5.53 0.00 35.79 4.69
2239 2304 4.931914 TCCTAAGGATTATACTCCCTCCG 58.068 47.826 5.53 0.00 35.79 4.63
2240 2305 6.563163 TCTTCCTAAGGATTATACTCCCTCC 58.437 44.000 5.53 0.00 35.79 4.30
2241 2306 8.493787 TTTCTTCCTAAGGATTATACTCCCTC 57.506 38.462 5.53 0.00 35.79 4.30
2242 2307 9.106977 GATTTCTTCCTAAGGATTATACTCCCT 57.893 37.037 5.53 0.00 35.79 4.20
2243 2308 8.881262 TGATTTCTTCCTAAGGATTATACTCCC 58.119 37.037 5.53 0.00 35.79 4.30
2244 2309 9.936759 CTGATTTCTTCCTAAGGATTATACTCC 57.063 37.037 0.79 0.79 35.37 3.85
2249 2314 9.445973 AGTCTCTGATTTCTTCCTAAGGATTAT 57.554 33.333 0.00 0.00 0.00 1.28
2250 2315 8.846423 AGTCTCTGATTTCTTCCTAAGGATTA 57.154 34.615 0.00 0.00 0.00 1.75
2251 2316 7.747809 AGTCTCTGATTTCTTCCTAAGGATT 57.252 36.000 0.00 0.00 0.00 3.01
2252 2317 7.013846 CGTAGTCTCTGATTTCTTCCTAAGGAT 59.986 40.741 0.00 0.00 0.00 3.24
2253 2318 6.319152 CGTAGTCTCTGATTTCTTCCTAAGGA 59.681 42.308 0.00 0.00 0.00 3.36
2254 2319 6.319152 TCGTAGTCTCTGATTTCTTCCTAAGG 59.681 42.308 0.00 0.00 0.00 2.69
2255 2320 7.148222 TGTCGTAGTCTCTGATTTCTTCCTAAG 60.148 40.741 0.00 0.00 0.00 2.18
2256 2321 6.657966 TGTCGTAGTCTCTGATTTCTTCCTAA 59.342 38.462 0.00 0.00 0.00 2.69
2257 2322 6.178324 TGTCGTAGTCTCTGATTTCTTCCTA 58.822 40.000 0.00 0.00 0.00 2.94
2258 2323 5.010933 TGTCGTAGTCTCTGATTTCTTCCT 58.989 41.667 0.00 0.00 0.00 3.36
2259 2324 5.312120 TGTCGTAGTCTCTGATTTCTTCC 57.688 43.478 0.00 0.00 0.00 3.46
2260 2325 5.287513 GCTTGTCGTAGTCTCTGATTTCTTC 59.712 44.000 0.00 0.00 0.00 2.87
2261 2326 5.047660 AGCTTGTCGTAGTCTCTGATTTCTT 60.048 40.000 0.00 0.00 0.00 2.52
2262 2327 4.461081 AGCTTGTCGTAGTCTCTGATTTCT 59.539 41.667 0.00 0.00 0.00 2.52
2263 2328 4.560819 CAGCTTGTCGTAGTCTCTGATTTC 59.439 45.833 0.00 0.00 0.00 2.17
2264 2329 4.218635 TCAGCTTGTCGTAGTCTCTGATTT 59.781 41.667 0.00 0.00 0.00 2.17
2265 2330 3.759086 TCAGCTTGTCGTAGTCTCTGATT 59.241 43.478 0.00 0.00 0.00 2.57
2266 2331 3.348119 TCAGCTTGTCGTAGTCTCTGAT 58.652 45.455 0.00 0.00 0.00 2.90
2267 2332 2.779506 TCAGCTTGTCGTAGTCTCTGA 58.220 47.619 0.00 0.00 0.00 3.27
2268 2333 3.773860 ATCAGCTTGTCGTAGTCTCTG 57.226 47.619 0.00 0.00 0.00 3.35
2269 2334 4.944930 ACTTATCAGCTTGTCGTAGTCTCT 59.055 41.667 0.00 0.00 0.00 3.10
2270 2335 5.238006 ACTTATCAGCTTGTCGTAGTCTC 57.762 43.478 0.00 0.00 0.00 3.36
2271 2336 6.754702 TTACTTATCAGCTTGTCGTAGTCT 57.245 37.500 0.00 0.00 0.00 3.24
2272 2337 8.344098 ACTATTACTTATCAGCTTGTCGTAGTC 58.656 37.037 0.00 0.00 0.00 2.59
2273 2338 8.223177 ACTATTACTTATCAGCTTGTCGTAGT 57.777 34.615 0.00 0.00 0.00 2.73
2274 2339 9.596677 GTACTATTACTTATCAGCTTGTCGTAG 57.403 37.037 0.00 0.00 0.00 3.51
2275 2340 9.334947 AGTACTATTACTTATCAGCTTGTCGTA 57.665 33.333 0.00 0.00 34.66 3.43
2276 2341 8.223177 AGTACTATTACTTATCAGCTTGTCGT 57.777 34.615 0.00 0.00 34.66 4.34
2277 2342 9.814507 CTAGTACTATTACTTATCAGCTTGTCG 57.185 37.037 2.33 0.00 39.43 4.35
2278 2343 9.615295 GCTAGTACTATTACTTATCAGCTTGTC 57.385 37.037 2.33 0.00 39.43 3.18
2279 2344 9.357161 AGCTAGTACTATTACTTATCAGCTTGT 57.643 33.333 2.33 0.00 41.04 3.16
2289 2354 9.917887 TCCACTCTTTAGCTAGTACTATTACTT 57.082 33.333 2.33 0.00 39.43 2.24
2290 2355 9.917887 TTCCACTCTTTAGCTAGTACTATTACT 57.082 33.333 2.33 4.47 41.69 2.24
2291 2356 9.949174 GTTCCACTCTTTAGCTAGTACTATTAC 57.051 37.037 2.33 0.00 0.00 1.89
2292 2357 9.690913 TGTTCCACTCTTTAGCTAGTACTATTA 57.309 33.333 2.33 0.00 0.00 0.98
2293 2358 8.468399 GTGTTCCACTCTTTAGCTAGTACTATT 58.532 37.037 2.33 0.00 0.00 1.73
2294 2359 7.835181 AGTGTTCCACTCTTTAGCTAGTACTAT 59.165 37.037 2.33 0.00 41.21 2.12
2295 2360 7.120873 CAGTGTTCCACTCTTTAGCTAGTACTA 59.879 40.741 1.89 1.89 43.43 1.82
2296 2361 6.011481 AGTGTTCCACTCTTTAGCTAGTACT 58.989 40.000 0.00 0.00 41.21 2.73
2297 2362 6.094061 CAGTGTTCCACTCTTTAGCTAGTAC 58.906 44.000 0.00 0.00 43.43 2.73
2298 2363 5.336531 GCAGTGTTCCACTCTTTAGCTAGTA 60.337 44.000 0.00 0.00 43.43 1.82
2299 2364 4.561734 GCAGTGTTCCACTCTTTAGCTAGT 60.562 45.833 0.00 0.00 43.43 2.57
2300 2365 3.929610 GCAGTGTTCCACTCTTTAGCTAG 59.070 47.826 0.00 0.00 43.43 3.42
2301 2366 3.578716 AGCAGTGTTCCACTCTTTAGCTA 59.421 43.478 4.84 0.00 43.43 3.32
2302 2367 2.370189 AGCAGTGTTCCACTCTTTAGCT 59.630 45.455 0.00 0.00 43.43 3.32
2303 2368 2.772287 AGCAGTGTTCCACTCTTTAGC 58.228 47.619 0.00 0.00 43.43 3.09
2304 2369 5.992217 ACTTAAGCAGTGTTCCACTCTTTAG 59.008 40.000 1.29 12.94 43.43 1.85
2305 2370 5.925509 ACTTAAGCAGTGTTCCACTCTTTA 58.074 37.500 1.29 4.65 43.43 1.85
2306 2371 4.781934 ACTTAAGCAGTGTTCCACTCTTT 58.218 39.130 1.29 5.36 43.43 2.52
2307 2372 4.423625 ACTTAAGCAGTGTTCCACTCTT 57.576 40.909 1.29 11.21 43.43 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.