>input_sequence_82617
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-------------------------------------------------------------------ATGGAGATAGAGT
CAGTCAAGTGTGAGTGCTGTGGCCTGAGGGAGGACTGCACCCAGGACTACATTGCGAGCGTGAGAGGCAGCTTCTACGGC
CAGTGGCTGTGCGGGCTGTGCTGCGAGGCCGTCAGGGACGAGGCCGGCAGGAAGAAGCAGGCGCACCCGGGCGTGGAGGA
GGCCGTGAGGGCGCACATGGCCTTCTGCAAGAAGTTCAAGTCCAACCCCGCCGTCCGGGTGGCCGACGGCATGCGTCAGA
TGCTCCGGCGGCGGTCCGGCGACTTGTCCAAGCCGCCGGGCTCCTCCT---CCTCCTCCAGCAAGTACGGCACTGCGCAG
GTCGGAGATGATTCATCCGTGTCGCTAT----ATTGA-------------------------------------------
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>chr4B_1_TraesCS4B01G018500
ATCGTGGAATCCATTTGCCATCCTTCATGAAAAGAGGTGTCAACCGACTAAAGCTATACCTAAACCTTTTAAAAAAATTA
AATAAAATCTATAAAACTGATACTACCGTGTATGTCCTCCACCTCTAAAACCTAATCACAGGTGGCTGCTGGAACCTCTA
TCGTAATTTTTT-GTTTAATTGTGTTTTTACCAAGCCATGTGCTGAATCTATATGGTAATTTTCAAATAGAAAGGCTAGT
GGATGGAGTAAATGTACATCCTCGAACGATATGCGAACTCACAATTATGCAATTCAGAGTATCTCAGGAACCAACTGCTA
CTTATAAAGGACGAGCAAGCATGGACAGTATTGATTGACAAGAACATCCAGGTTAAATTATGCAATCCTACGGCACTTTG
AGTTTATGGAGTAACTTGTGCTGGTGCATAAAACCTAATCTGGTAGCAGGGTCAGATGTCCTCCCTCTGGCAGCTGGCTG
GCTCATGTCACCAGAAACAGCACTGCCTGGCTCAAACATTTGCAGAAATCCTAAAAAC------------------AAAT
GAGACCAATCCAAGAGCTAACCCTCGTTGACATTTATTTATAGAAGAAACTCCGCGAGCACCACGCGTTCAAGCTGGGAC
TTGAACTCGGGTGGGCTGGCACCGGTGGATTGATCAGCAAGGAACAAAGGTTGCATTTTGTGTGGAAGGGGAGAGGCCCC
CCGAATTCCCGCAGCAACAGCAACACTTTCCAGCCACCAACTGATGCCAGAGTTTTTAAATGCCAGGGAAAAGGCCAGCA
AATGAGGCAGGCTCACACCCAACTAACTCTGTCTCAAATCTCTCGCCTCAGAACATGCGGCAACGCCTTCCAATCATAAA
TGCACCCCATCCCATCCCCACCCCTGCCCCTCGCAACCGTAATAACCTCCCTCCTCCCCTACAAATAGCCTC--------
CCAACCAAGGCCAGCACAGCACAGCACACCACAGCACGGCACAGAGCAATAGCCATAGCCAGCAGCAATGGAGATAGAGT
CAGTCAAGTGTGAGTGCTGTGGCCTGAGGGAGGACTGCACCCAGGACTACATTGCGAGCGTGAGAGGCAGCTTCTACGGC
CAGTGGCTGTGCGGGCTGTGCTGCGAGGCCGTCAGGGACGAGGCCGGCAGGAAGAAGCAGGCGCACCCGGGCGTGGAGGA
GGCCGTGAGGGCGCACATGGCCTTCTGCAAGAAGTTCAAGTCCAACCCCGCCGTCCGGGTGGCCGACGGCATGCGTCAGA
TGCTCCGGCGGCGGTCCGGCGACTTGTCCAAGCCGCCGGGCTCCTCCT---CCTCCTCCAGCAAGTACGGCACTGCGCAG
GTCGGAGATGATTCATCCGTGTCGCTAT----ATTGAGGAGCACACCATTA--ATTCTATGGCTTGTAGACCGTCCTTCT
AGTGCTTTTCTCAGGCTTGAATCTCCTGTTTCTTTTGTCATTTTTGGCATATATTCTTATGATGGCAAGAATTTAGAATG
TACAGAAAGTCGTAAATTTCTTCGAAATGGATGCTAATAGATAGTGCTTGGCTTTGAAATGAGACTGCCTTC-TTTTTGT
TCGTTTTAA---CAGAAGCAATCATGAGTTGCCAACATATACTAATACTACT-------TAGATGAGCTAATTGGTTTCT
TGTTGCAACCTAACAAAGACAAAGAGGAGGTTAGCATGCATGTGCAAGCAACATTGTTCACACTACTCGCCGTGTCTGAC
GTGATTTGCGACGCAGACGCTGCACCAAGAATCAAGGCAAAAATCTATTTATCTATATATGTACCGGTATTACCTAAAGC
TGGTGGCTGCTGTTGCACTTGCACCACTATACTGTGATCAAGATTATAGTGATAGC--------------ATTTGGAACT
CCTTTTTA-TTTCTCCCTTTCCAATGTTCACATTATAGTGATAGCTGCTGACCACAGCATGTGCACTTTGACATCAAAGA
TTGCAACACTGTGATATCCCAG--ATGGGTGTGTGGTCATATTACGAACAGGGTGAGGACACTAAATCTTCATCTAAAAC
ATGGTCACTAACAATCAGTTCAACAGTCCTGAAGATAAGGATAGATCTTTACAGGTTACGTCGCTGTATTGTACTCCCTC
CGTTCCTAAATATTTGTCTTTCTAGCATTTCAAATGGACTACCACATGCGGATGTATGTAGACATATTTTAAAATGTATA
TTCACTCATTTGCTCCGTCTGTAGTCAGTTGTTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTATAATCC
TTAGGAAGAAATCAGAGACTACGACAAGCTGATAAGTAATAGTACTAGCTAAAGAGTGGAACACTGCTTAAGTGGAGTTG
TGATGGTGCTAGACCAAGTTCTACGAA
>chr4A_1
ATCGTGGAATCCATTTGCCATCCTTCCTGAAAAGAGGTGTCAACCGACTAAAGGTAGACCTAAACCTTTTTAAACATAA-
----------ATAAAATTGATACTACCGTGTATGCCCTCCACCTCGAAATCCTAATCACAGGTGGCTGCTGGAATCTGTA
TGGTAATTTTTT-GTTTAATTTTGTCTTTAGCAAGCCATGTGCTGAATCTATATGGTAATTTTCAAATAGAAAGGCTAGT
GGATGGAGTAAGTGTACATCCTCGAACGATATGCGAACTCACAATTATGCAACTCAGAGTATCTCAGGAACCAACTGCCA
CTTATAAAGGACGAGCAAGCATGGACAGTATTGATTGACAAGAACATA-------------------CTACGGCACTTTG
AGTTTATGGAGTAACTTGTGCTGGTGCATAAAACCTAATCTGGTAGCAGGGTGAGATGTCCTCCCTCTGGCAGCTGGTTG
GCTCATGTCACCAGAAACAGCACTGCCTGGCTCAAACATTT--------CCATACCTACAGG-------------AAACT
GAAACCTGACAAAGAACCAACTCCTTTTAACCTGAAAAATATGTATACTAGG----------------------------
----------------TGGCACCGGTGGATTGATCAGCAAGGGACAAAGGTTGCATTTTGTGTGGAAGGGGAGAGGCCCC
CCAAATTCCCACAGCAACAGCAACACTTTCCAGCCACCAACTGATGCCAGAATTTTTAAATGCCAGGAAAA-GGCCAGCA
AAT-----AGGCTCACACCCAACTAACTCTGTCTCAAATCTCTCGCCTCAGAACATGCAGCAACGCCTTCCAATCATAAA
TACACCCCATCCCATCCCCACCCCTGCCC-TCACAACCGTAATAACCTCC----TCCCCTACAAATAGCCTC--------
CCAACCAAGGCCAGCACAGCACACCACAGCACACCACAGCACAGAGCAATAGCCATAGCCAGCAGCAATGGAGATAGAGT
CGGTCAAGTGTGAGTGCTGTGGCCTGAGGGAGGACTGCACCCAGGACTACATTGCGAGCGTGAGAGCCAGCTTCTACGGC
CAGTGGCTGTGCGGGCTGTGCTGCGAGGCCGTGAGGGACGAGGCCGGCAGGAAGAAG---GCTCACCCCGGCGTGGAGGA
GGCCGTGCGGGCGCACATGGCGTTCTGCAAGAAGTTCAAGTCCAACCCCGCCGTCCGGGTCGCCGACGGCATGCGCCAGA
TGCTCCGCAGGCGGTCCGGTGACTTGTCCAAGCCGTCGGGCTCCTCCT---C------CAACAAGTACAGCACTGCGCAG
GTCGGAGATGATTCATCCGTGTCGCTAT----ATTGAGGAGTACACCATTACCATTCTATGGCTTGTAGACCGACCGCCT
AGTGCTTTTCTCAGGCTTGAATCTCCTGTTTCTTTTGTCGTTTTTGGCATATATTCTTATGATGGCAAGAAGTTAGAATG
TACAGAAAGTCATAAATTGCTTCGAAATGAATGCT----GATAGTGCTTGGCTTTGATATGAGGCTGCGTTTTTTTTTGT
TCGTTTTAAGAACAGAAGCAATCATGAGTTGCCAACATATACTACTACTACTACTTAGATAGATGAGTTAATTGGTTTCT
TGTTGCAACCTAACAAAGACAAAGAGGAGGTTAGCATGCATGTGCAAGCAACATTGTTCACACTACTCGCTGTGTCTGAC
GTGATTTGCGATGGAGACGCCGCACCAAGAATCAAGGCAA---TCTATTTATCA----ATGTACCGGTATTACCTAAAGC
TGGTGGCTGCTGTTGCACCACTATACTG--ACTGTGATCAAGATTATAGTGATAGCTATAAAGTGACAGCATTTGGAACT
ACTCCTCTTTTTTCCCCTTTCCAACGTTCAAATTATAGCGATAGCTGCTGACCAAAGCATGTGCAGTTTGATATCAAGAT
TGTAGAAGTATTGTGATTTCTCATATGAGCGTGTGGTCTAATCAGGAACAGGTTGAGGACACT-----------------
-------------ATCAGTTCAACAGTCCTGAAGACAAGGATAGACTATTTA----------------------------
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------------------------------------------------------AGTGAAACACTGCTTAAGTGGAGTTG
TGATGGTACTA----------------
>chr4D_1
ATCGTGGAATCCATTTGCCATCCTTCATGAAAAGAGGTGTCAACCGACTAAAGCTATACCTAGACCTTTTCAAAATA-TA
AACAAAATCTACAAAATTGGTACTACCGTGTATGCCCTCCACCTCTAAATCTTAATCACAGGTGGCTGCTGGAATCTGTA
TGGTAATTTTTTTGTTTAATTTTGTTTTTACCAAGCCATGT--------------------------TAGAAAGGCTAGT
GGATGGAGTAAGTGTACATCCTCGAACGATATGCGAACTCACAATTATGCAATTCAGAGTATCTCAGGAACCAACTGCCA
CTTATAAAGGACGAGCAAGCATGGACAGTATTGATTGACAAGAACATCCAGGTTAAATTATGCAATCCTACGGCACTTTG
AGTTTATGGAGTAACTTGTGCTGGTGCATAAAACCTAATCTGGTAGCAGGGTGAGATGTCCTCCCTCTGGCAGCTGGCTG
GCTCATGTCACCGGAAACAGCACTGCCTGGCTCAAACATTTGTAGAAATCCATACCTACAGGGAAAAACTGGAGAAAACT
GAAACTTGACAAAGAACCAACT--------CCTGAAAAATATGTATACTCGG----------------------------
----------------TGGCACCGGTGGATTGATCAGCAAGGGACAAAGGTTGCATTTTGTGTGGAAGGGGAGAGGCCCC
CCAAATTCCCACAGCAACAGCAACACTTTCCAGCCACCAACTGATGCCAGAGTTTTTAAATGCCAGGAAAAAGGCCAGCA
AACGAGGCAGGCTCACACCCAACTAACTCTGTCTCAAATCTCTCGCCTCAGAACATGCAGCAACGCCTTCCAATCATAAA
TACACCCCATCCCATCCCC-----TGCCC-TCACAACCGTAATAACCTCC----TCCCCTACAAATAGCCTCCCAAGAAG
CCAACCAAGGCCAGCACAGCACAGCACAGAGCAAT---------AGCAATAGCCATAGCCAGCAGCAATGGAGATAGAGT
CGGTCAAGTGTGAGTGCTGTGGCCTGAGGGAGGACTGCACCCCGGACTACATTGCGAGCGTGAGAGCCGGCTTCTACGGC
CAGTGGCTGTGCGGGCTGTGCTGCGAGGCCGTCAGGGACGAGGCCGGCAGGAAGAAGCAGGCTCACCCGGGCGTCGAGGA
GGCCGTGCGGGCGCACATGGCCTTCTGCAAGAAGTTCAAGTCCAACCCCGCCGTCCGGGTCGCCGACGGCATGCGCCAGA
TGCTCCGGAGGCGGTCCGGTGACTTGTCCAAGCCGCCGGGCTCCTCCTCCTC------CAACAAGTACGGCACTGCGCAG
GTCGGAGATGATTCGCCCGTGTCGCTATATTAATTGAGGAGTACACCGTTACCATTCTATGGCTTGTAGACCATCTAGTG
CTT--TTTTCTCAGGCTCAAATCTCCTGTTTCTTTTGTCATTTTTGGCGTATGTTCTTATTGTGGAAAGAACTTGGAATG
TACAGAAAGTCATAAATTTCTACGAAATAGATGCT----AATAGTGCTTGGCTTTGAAATGAGACTGTGTTC-TTTTTGT
TCGTTTTAAGAAC-GAAGCAATCATGAGTTGCCAACATATACTACTACTACT---TAGATAGATGTGCTAATTGGTTTCT
TGTTGCAACCTAACAAAGACAAGGAGGAGGTTAGCATGCATGTGCAAGCAACATTGTTCACACTACTCGCTGTGTCTGAC
GTGATTTGCGATGGAGACGCCGCACCAAGAATCAAGGCAA---TCTATTTATCT----ATGTACCGGTGTTACCTAAAGC
TGGTGGCTGCTGTTGCACCACTATACTG--ACTGTGATCAAGATTATAGTGATAGCTA--AAGTGATGGCATTTGGAA--
-CTCCTTTTTTTCCCCCTTTCCAATGTTCACATTATACTGATAGCTGCTGACCACAGCATGTGCAGTTTGATATCAAGAT
TGTAGAAGTATTGTGATTTCTCATATGAGTGTGTGGTCTAATCAGGAACAGGTTGAGGACACT-----------------
-------------A------------------------------------------------------------------
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>SNPs
----------------------------------------------------------------------S------S--
--S-------------S-----------------S--------------S------------------------S--S--
-S-------------------S----------------------------------------------------------
-----------S------------------------------------------------------------------S-
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----------------------------------------------------S---------------------------
------------------------------------------S--------SS-SSSS--------------------S-
--S---SSS-S----S-S---S-SSS--S--S-SS-SSSSSS-S-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS--------------------------S-------------------------------------
--S-------S--------------------------------------------------------S------------
----------------------------------------------------------S---------------------
-S---------------------------S--S-----------------SSSS--------------------------
----------------------------S----S---S------------------------------------------
-S----------------------------------------------------------------S-------------
--------------------------------------------------------------S-----------------
-------S----------------------------------------------------S--------------S----
--------S----------S--------------------------------SSSSSS--S-------------------
-----------------------------------------S----------------------------------SS--
-----------------------------------------------------------------------S--------
-----------S-----------------------SSSS-----------------------------S-----------
--------------------------------------------S-----------------------------------
----------------------------------------------------------------------S---------
-----------S-S------S-------------------SSS-----------SSSS----------------------
------------------SSSS-SSSSSSS--------------------------------------------------
S--SS--S-----S---------------------------------------------------S-----S-----SSS
-SSSS-SSSSS--SS--SS-SS-----S----------SS--S-S-------S----------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS----------------------S---------SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---------------------
-------S---SSSSSSSSSSSSSSSS
>forward_523
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-----------------------TGCCTGGCTCAAACATTTGC-------------------------------------
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>reverse_2195
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----------------------------------TGGACTACCACATGCGGATG--------------------------
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