AutoCloner

Multiple sequence alignment - TraesCS4A01G470900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G470900	chr4A	100.000	2372	0	0	1	2372	731620373	731618002	0.000000e+00	4381
1	TraesCS4A01G470900	chr4A	95.082	793	36	2	1	790	478248624	478249416	0.000000e+00	1245
2	TraesCS4A01G470900	chr4A	86.142	635	42	14	1758	2370	731762838	731762228	0.000000e+00	643
3	TraesCS4A01G470900	chr4A	79.655	521	71	15	1750	2255	731583455	731582955	2.260000e-90	342
4	TraesCS4A01G470900	chr4A	77.188	377	52	16	1765	2127	731775809	731775453	3.110000e-44	189
5	TraesCS4A01G470900	chr4A	79.078	282	30	14	2076	2351	731864495	731864237	1.460000e-37	167
6	TraesCS4A01G470900	chr4A	78.862	246	34	13	2119	2363	731802957	731802729	1.470000e-32	150
7	TraesCS4A01G470900	chr4A	89.908	109	11	0	2172	2280	731775443	731775335	8.840000e-30	141
8	TraesCS4A01G470900	chr4A	88.421	95	9	2	1659	1752	731864992	731864899	1.930000e-21	113
9	TraesCS4A01G470900	chr1D	93.695	793	46	4	1	790	316237540	316236749	0.000000e+00	1184
10	TraesCS4A01G470900	chr3D	93.267	802	42	4	1	790	610028172	610027371	0.000000e+00	1171
11	TraesCS4A01G470900	chr3D	90.965	819	43	7	1	790	341123	341939	0.000000e+00	1074
12	TraesCS4A01G470900	chr3D	85.437	309	37	7	1127	1432	328514474	328514777	4.920000e-82	315
13	TraesCS4A01G470900	chr3D	88.119	101	11	1	844	944	328513976	328514075	4.140000e-23	119
14	TraesCS4A01G470900	chr5D	92.750	800	46	5	1	790	552002460	552001663	0.000000e+00	1146
15	TraesCS4A01G470900	chr5D	92.695	794	53	5	1	790	555420479	555421271	0.000000e+00	1140
16	TraesCS4A01G470900	chr5D	91.595	809	49	3	1	790	333096119	333096927	0.000000e+00	1099
17	TraesCS4A01G470900	chr5D	90.807	805	56	11	1	792	27882637	27883436	0.000000e+00	1061
18	TraesCS4A01G470900	chr5D	85.072	489	68	4	942	1429	299065441	299064957	5.890000e-136	494
19	TraesCS4A01G470900	chr6D	92.453	795	45	8	1	791	420178264	420179047	0.000000e+00	1122
20	TraesCS4A01G470900	chr7D	91.739	811	43	8	1	790	586691694	586690887	0.000000e+00	1105
21	TraesCS4A01G470900	chr7D	84.404	654	58	18	1581	2213	7559433	7560063	9.380000e-169	603
22	TraesCS4A01G470900	chr7D	82.916	439	43	13	1952	2370	7748611	7749037	1.340000e-97	366
23	TraesCS4A01G470900	chr7D	88.889	261	26	3	1439	1697	7747921	7748180	3.800000e-83	318
24	TraesCS4A01G470900	chr7D	87.833	263	18	8	1715	1964	7748171	7748432	1.780000e-76	296
25	TraesCS4A01G470900	chr7D	89.623	106	9	2	1449	1554	7664853	7664956	1.480000e-27	134
26	TraesCS4A01G470900	chr7D	89.623	106	9	2	1449	1554	7683325	7683428	1.480000e-27	134
27	TraesCS4A01G470900	chr2D	92.016	764	46	7	43	791	617384573	617385336	0.000000e+00	1059
28	TraesCS4A01G470900	chr2D	90.524	496	38	4	942	1431	88756074	88755582	0.000000e+00	647
29	TraesCS4A01G470900	chr2D	94.079	152	9	0	791	942	88756302	88756151	5.100000e-57	231
30	TraesCS4A01G470900	chr2A	92.098	367	26	1	1064	1430	748880157	748879794	4.520000e-142	514
31	TraesCS4A01G470900	chr3B	86.688	308	35	5	1127	1432	425676698	425677001	1.050000e-88	337
32	TraesCS4A01G470900	chr7B	86.379	301	40	1	942	1242	19951048	19950749	6.320000e-86	327
33	TraesCS4A01G470900	chr7B	88.816	152	17	0	791	942	19951251	19951100	1.120000e-43	187
34	TraesCS4A01G470900	chr5A	83.258	221	35	2	942	1161	397915517	397915736	4.000000e-48	202

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G470900	chr4A	731618002	731620373	2371	True	4381.000000	4381	100.0000	1	2372	1	chr4A.!!$R2	2371
1	TraesCS4A01G470900	chr4A	478248624	478249416	792	False	1245.000000	1245	95.0820	1	790	1	chr4A.!!$F1	789
2	TraesCS4A01G470900	chr4A	731762228	731762838	610	True	643.000000	643	86.1420	1758	2370	1	chr4A.!!$R3	612
3	TraesCS4A01G470900	chr4A	731582955	731583455	500	True	342.000000	342	79.6550	1750	2255	1	chr4A.!!$R1	505
4	TraesCS4A01G470900	chr1D	316236749	316237540	791	True	1184.000000	1184	93.6950	1	790	1	chr1D.!!$R1	789
5	TraesCS4A01G470900	chr3D	610027371	610028172	801	True	1171.000000	1171	93.2670	1	790	1	chr3D.!!$R1	789
6	TraesCS4A01G470900	chr3D	341123	341939	816	False	1074.000000	1074	90.9650	1	790	1	chr3D.!!$F1	789
7	TraesCS4A01G470900	chr3D	328513976	328514777	801	False	217.000000	315	86.7780	844	1432	2	chr3D.!!$F2	588
8	TraesCS4A01G470900	chr5D	552001663	552002460	797	True	1146.000000	1146	92.7500	1	790	1	chr5D.!!$R2	789
9	TraesCS4A01G470900	chr5D	555420479	555421271	792	False	1140.000000	1140	92.6950	1	790	1	chr5D.!!$F3	789
10	TraesCS4A01G470900	chr5D	333096119	333096927	808	False	1099.000000	1099	91.5950	1	790	1	chr5D.!!$F2	789
11	TraesCS4A01G470900	chr5D	27882637	27883436	799	False	1061.000000	1061	90.8070	1	792	1	chr5D.!!$F1	791
12	TraesCS4A01G470900	chr6D	420178264	420179047	783	False	1122.000000	1122	92.4530	1	791	1	chr6D.!!$F1	790
13	TraesCS4A01G470900	chr7D	586690887	586691694	807	True	1105.000000	1105	91.7390	1	790	1	chr7D.!!$R1	789
14	TraesCS4A01G470900	chr7D	7559433	7560063	630	False	603.000000	603	84.4040	1581	2213	1	chr7D.!!$F1	632
15	TraesCS4A01G470900	chr7D	7747921	7749037	1116	False	326.666667	366	86.5460	1439	2370	3	chr7D.!!$F4	931
16	TraesCS4A01G470900	chr2D	617384573	617385336	763	False	1059.000000	1059	92.0160	43	791	1	chr2D.!!$F1	748
17	TraesCS4A01G470900	chr2D	88755582	88756302	720	True	439.000000	647	92.3015	791	1431	2	chr2D.!!$R1	640
18	TraesCS4A01G470900	chr7B	19950749	19951251	502	True	257.000000	327	87.5975	791	1242	2	chr7B.!!$R1	451

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
958	1375	0.447801	GGTACAGTTTGCAGGCGATG	59.552	55.0	0.0	0.0	0.0	3.84	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1857	2285	0.035056	CCCTTCCAACCTGCTACCTG	60.035	60.0	0.0	0.0	0.0	4.0	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
545	611	2.889200	GGTCTGACCTGATCCGACT	58.111	57.895	19.53	0.00	40.45	4.18
572	638	2.483745	CGACGAGCGGCTCTAACA	59.516	61.111	25.96	0.00	36.03	2.41
600	670	2.182537	CGCCGTTAGCCGTTAGGT	59.817	61.111	0.00	0.00	40.50	3.08
696	766	6.708949	TCAACCTGGTAGTTTTTAGTCATGTC	59.291	38.462	0.00	0.00	0.00	3.06
753	824	4.447138	AAAATGGTAGTTCTGTGGGACA	57.553	40.909	0.00	0.00	0.00	4.02
808	880	3.953612	ACTCCAGCTCAGTCTCTAGAATG	59.046	47.826	1.06	1.06	41.06	2.67
820	892	6.751425	CAGTCTCTAGAATGCAAAGTAGTCAG	59.249	42.308	0.00	0.00	33.27	3.51
886	1226	4.919754	GCAAAGACAGGATCAATTGACAAC	59.080	41.667	11.07	4.04	31.40	3.32
958	1375	0.447801	GGTACAGTTTGCAGGCGATG	59.552	55.000	0.00	0.00	0.00	3.84
964	1381	1.302112	TTTGCAGGCGATGGACGAA	60.302	52.632	0.00	0.00	45.77	3.85
992	1409	2.830923	AGCTATGCATCTCGGCTATCTT	59.169	45.455	0.19	0.00	34.04	2.40
1001	1418	3.989104	CGGCTATCTTTCCACCGAT	57.011	52.632	0.00	0.00	46.71	4.18
1074	1491	1.150567	CGGAGCGGCTTCAGATTCAG	61.151	60.000	9.34	0.00	0.00	3.02
1091	1508	2.783135	TCAGCAGGGAACATTTCTGAC	58.217	47.619	0.00	0.00	0.00	3.51
1097	1514	2.076863	GGGAACATTTCTGACGGACAG	58.923	52.381	0.88	0.88	46.97	3.51
1142	1559	1.252904	GCCAGCAAGCCCATTCTTGA	61.253	55.000	7.60	0.00	44.61	3.02
1195	1612	2.424601	GCATGCATAACAGCTTCCTCAA	59.575	45.455	14.21	0.00	34.99	3.02
1251	1668	3.314553	GAGCTACAACTTACGAGCACAA	58.685	45.455	0.00	0.00	37.40	3.33
1287	1704	8.084684	AGATTAGCAATCAAAACTCAAAACTCC	58.915	33.333	10.26	0.00	40.42	3.85
1293	1710	4.605183	TCAAAACTCAAAACTCCCCTTCA	58.395	39.130	0.00	0.00	0.00	3.02
1367	1786	2.615447	CTGCACTTTCTTCAGAACTGCA	59.385	45.455	15.61	15.61	41.73	4.41
1368	1787	3.016031	TGCACTTTCTTCAGAACTGCAA	58.984	40.909	14.68	3.96	41.37	4.08
1369	1788	3.633525	TGCACTTTCTTCAGAACTGCAAT	59.366	39.130	14.68	0.00	41.37	3.56
1413	1836	9.289303	GTACGATGCTGTTAATCAATGAAATTT	57.711	29.630	0.00	0.00	31.22	1.82
1519	1943	2.356278	CCCAAGCCTAGCCAAGCA	59.644	61.111	0.00	0.00	0.00	3.91
1530	1954	2.361771	CCAAGCAGGGCCAGGAAT	59.638	61.111	6.18	0.00	0.00	3.01
1534	1958	1.133699	CAAGCAGGGCCAGGAATATCA	60.134	52.381	6.18	0.00	0.00	2.15
1537	1961	1.544314	GCAGGGCCAGGAATATCAGAC	60.544	57.143	6.18	0.00	0.00	3.51
1542	1966	3.416156	GGCCAGGAATATCAGACCATTC	58.584	50.000	0.00	0.00	0.00	2.67
1543	1967	3.070018	GCCAGGAATATCAGACCATTCG	58.930	50.000	0.00	0.00	32.92	3.34
1544	1968	3.668447	CCAGGAATATCAGACCATTCGG	58.332	50.000	0.00	0.00	32.92	4.30
1548	1972	1.048601	ATATCAGACCATTCGGCCGT	58.951	50.000	27.15	4.54	34.57	5.68
1603	2027	2.972713	TCTAAAGGACAGCTTGGTCAGT	59.027	45.455	6.54	0.00	39.59	3.41
1632	2056	0.541998	TGACCTGACCGTGTCCATCT	60.542	55.000	2.23	0.00	0.00	2.90
1700	2127	3.623906	ATGGAGTGGTTGATGAGAGTG	57.376	47.619	0.00	0.00	0.00	3.51
1706	2133	1.546029	TGGTTGATGAGAGTGAGGTCG	59.454	52.381	0.00	0.00	0.00	4.79
1761	2188	1.933853	CGGTGCTAAGCAAGTATGTCC	59.066	52.381	0.00	0.00	41.47	4.02
1812	2239	0.780637	TGAGGGGAGCCTATCGATCT	59.219	55.000	0.00	0.00	0.00	2.75
1857	2285	4.081917	GGCAGGATATGTAGCTAAGAGACC	60.082	50.000	0.00	0.00	0.00	3.85
1887	2315	5.211201	CAGGTTGGAAGGGATTGGATTTAT	58.789	41.667	0.00	0.00	0.00	1.40
1890	2318	7.510343	CAGGTTGGAAGGGATTGGATTTATAAT	59.490	37.037	0.00	0.00	0.00	1.28
1901	2329	9.545105	GGATTGGATTTATAATTTCACAATGCA	57.455	29.630	15.97	0.00	36.08	3.96
1957	2589	0.890996	AAGCTTCCTGTGCCTTTCCG	60.891	55.000	0.00	0.00	0.00	4.30
1973	2605	2.975536	CGGCAAGTCGGAACCCTA	59.024	61.111	0.00	0.00	0.00	3.53
1974	2606	1.520666	CGGCAAGTCGGAACCCTAT	59.479	57.895	0.00	0.00	0.00	2.57
1975	2607	0.810031	CGGCAAGTCGGAACCCTATG	60.810	60.000	0.00	0.00	0.00	2.23
1976	2608	0.252197	GGCAAGTCGGAACCCTATGT	59.748	55.000	0.00	0.00	0.00	2.29
1983	2617	6.551736	CAAGTCGGAACCCTATGTTATTTTG	58.448	40.000	0.00	0.00	37.29	2.44
2024	2659	6.588719	ATTTCCAGCTGTTTTGTGCTATAA	57.411	33.333	13.81	0.00	37.81	0.98
2027	2662	3.758554	CCAGCTGTTTTGTGCTATAAGGT	59.241	43.478	13.81	0.00	37.81	3.50
2055	2691	4.902443	TGTAGCTCCTTTGTCTCTATCG	57.098	45.455	0.00	0.00	0.00	2.92
2058	2694	2.428890	AGCTCCTTTGTCTCTATCGTGG	59.571	50.000	0.00	0.00	0.00	4.94
2064	2700	2.073252	TGTCTCTATCGTGGCTCCAT	57.927	50.000	0.00	0.00	0.00	3.41
2093	2736	1.473965	CCCAGATCGATTCACCTGTGG	60.474	57.143	0.00	2.63	0.00	4.17
2167	2814	7.544804	TCTATATCATACCTCATTGTGCAGT	57.455	36.000	0.00	0.00	0.00	4.40
2199	2846	5.416271	ACGCCTATAGAACCTCAAAGAAA	57.584	39.130	0.00	0.00	0.00	2.52
2279	2932	8.642935	AGTAGCACATTCTCTAGCAATATAGA	57.357	34.615	0.00	0.00	0.00	1.98
2280	2933	8.739039	AGTAGCACATTCTCTAGCAATATAGAG	58.261	37.037	4.70	4.70	46.85	2.43
2281	2934	7.537596	AGCACATTCTCTAGCAATATAGAGT	57.462	36.000	9.84	0.00	46.00	3.24
2370	3024	0.468771	GCCCTGCAGATGCCCTTTAT	60.469	55.000	17.39	0.00	41.18	1.40
2371	3025	1.202927	GCCCTGCAGATGCCCTTTATA	60.203	52.381	17.39	0.00	41.18	0.98

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
59	61	7.402862	ACTCAATATTGTGCCTAGTTAGGTTT	58.597	34.615	14.97	0.00	45.42	3.27
114	116	5.460646	AGTATTGTGCATACTTTGTTGTGC	58.539	37.500	0.00	0.00	45.19	4.57
275	336	0.803740	CAAGAAGCAGAGCTCAAGGC	59.196	55.000	17.77	16.07	38.25	4.35
396	457	4.853142	AGGCATACCTCCGGGCGA	62.853	66.667	0.00	0.00	46.34	5.54
467	528	2.689034	CCCCGAGCTCCTCCCTTT	60.689	66.667	8.47	0.00	0.00	3.11
753	824	5.494390	AAACTATCACTTTAGGGGTTCGT	57.506	39.130	0.00	0.00	0.00	3.85
808	880	2.415090	CCATGCAAGCTGACTACTTTGC	60.415	50.000	0.00	1.39	0.00	3.68
820	892	2.819608	TCCTTGTTAGTTCCATGCAAGC	59.180	45.455	0.00	0.00	36.26	4.01
886	1226	0.179100	AGGAGATGGTGTCGATTGCG	60.179	55.000	0.00	0.00	39.35	4.85
958	1375	2.197577	GCATAGCTGAGAACTTCGTCC	58.802	52.381	0.00	0.00	0.00	4.79
964	1381	2.035704	CCGAGATGCATAGCTGAGAACT	59.964	50.000	0.00	0.00	0.00	3.01
975	1392	2.369860	TGGAAAGATAGCCGAGATGCAT	59.630	45.455	0.00	0.00	0.00	3.96
992	1409	0.904649	AGCTGATGTCATCGGTGGAA	59.095	50.000	20.42	0.00	37.96	3.53
1001	1418	0.761187	GGCCTGGATAGCTGATGTCA	59.239	55.000	0.00	0.00	0.00	3.58
1074	1491	0.804989	CCGTCAGAAATGTTCCCTGC	59.195	55.000	0.00	0.00	0.00	4.85
1091	1508	1.769098	CGCCAGAATCATGCTGTCCG	61.769	60.000	0.00	0.00	0.00	4.79
1097	1514	0.737219	AGCTTTCGCCAGAATCATGC	59.263	50.000	0.00	0.00	36.09	4.06
1195	1612	8.579850	TGATAAATTCTTGTAGCATCAAAGGT	57.420	30.769	0.00	0.00	0.00	3.50
1228	1645	1.890489	TGCTCGTAAGTTGTAGCTCCA	59.110	47.619	0.00	0.00	35.95	3.86
1242	1659	0.105964	TAGCTTGGTGTTGTGCTCGT	59.894	50.000	0.00	0.00	37.02	4.18
1286	1703	2.292828	ACATGTGAACCTTGAAGGGG	57.707	50.000	16.78	0.00	40.58	4.79
1287	1704	4.218417	CCTAAACATGTGAACCTTGAAGGG	59.782	45.833	16.78	0.00	40.58	3.95
1293	1710	4.827284	CCTGAACCTAAACATGTGAACCTT	59.173	41.667	0.00	0.00	0.00	3.50
1367	1786	6.651643	TCGTACAAGTACAACCTTGCATTATT	59.348	34.615	10.63	0.00	44.55	1.40
1368	1787	6.167685	TCGTACAAGTACAACCTTGCATTAT	58.832	36.000	10.63	0.00	44.55	1.28
1369	1788	5.539979	TCGTACAAGTACAACCTTGCATTA	58.460	37.500	10.63	0.00	44.55	1.90
1432	1856	3.524606	CGTCCACGCGGGGTATCT	61.525	66.667	29.71	0.00	37.22	1.98
1468	1892	2.260869	GGCTTCGCTGGAGTTTGCA	61.261	57.895	0.00	0.00	0.00	4.08
1498	1922	1.919600	CTTGGCTAGGCTTGGGCTCT	61.920	60.000	18.18	0.00	39.70	4.09
1505	1929	2.679716	CCCTGCTTGGCTAGGCTT	59.320	61.111	18.18	0.00	32.58	4.35
1519	1943	1.345422	TGGTCTGATATTCCTGGCCCT	60.345	52.381	0.00	0.00	0.00	5.19
1530	1954	0.387929	GACGGCCGAATGGTCTGATA	59.612	55.000	35.90	0.00	37.90	2.15
1534	1958	4.143333	CCGACGGCCGAATGGTCT	62.143	66.667	35.90	7.12	37.90	3.85
1567	1991	2.221906	TTAGACCGCCAGGAACGAGC	62.222	60.000	0.00	0.00	41.02	5.03
1570	1994	0.739813	CCTTTAGACCGCCAGGAACG	60.740	60.000	0.00	0.00	41.02	3.95
1572	1996	0.611714	GTCCTTTAGACCGCCAGGAA	59.388	55.000	0.00	0.00	39.84	3.36
1603	2027	1.469335	GGTCAGGTCAGGTCCGTTCA	61.469	60.000	0.00	0.00	0.00	3.18
1761	2188	2.515523	CCGGCCTGCATGGAAGAG	60.516	66.667	0.00	0.00	38.35	2.85
1812	2239	9.906660	CTGCCAACTTTACAATTAGATTTAACA	57.093	29.630	0.00	0.00	0.00	2.41
1857	2285	0.035056	CCCTTCCAACCTGCTACCTG	60.035	60.000	0.00	0.00	0.00	4.00
1887	2315	5.042593	GGCGATGATTGCATTGTGAAATTA	58.957	37.500	7.02	0.00	38.05	1.40
1890	2318	2.230750	TGGCGATGATTGCATTGTGAAA	59.769	40.909	7.02	0.00	38.05	2.69
1957	2589	0.252197	ACATAGGGTTCCGACTTGCC	59.748	55.000	0.00	0.00	0.00	4.52
1972	2604	8.112016	TCCGGAAATTGACACAAAATAACATA	57.888	30.769	0.00	0.00	0.00	2.29
1973	2605	6.987386	TCCGGAAATTGACACAAAATAACAT	58.013	32.000	0.00	0.00	0.00	2.71
1974	2606	6.392625	TCCGGAAATTGACACAAAATAACA	57.607	33.333	0.00	0.00	0.00	2.41
1975	2607	5.344933	GCTCCGGAAATTGACACAAAATAAC	59.655	40.000	5.23	0.00	0.00	1.89
1976	2608	5.010112	TGCTCCGGAAATTGACACAAAATAA	59.990	36.000	5.23	0.00	0.00	1.40
1983	2617	3.575965	AATTGCTCCGGAAATTGACAC	57.424	42.857	12.34	0.00	30.01	3.67
2024	2659	7.862675	AGACAAAGGAGCTACATAAATAACCT	58.137	34.615	0.00	0.00	0.00	3.50
2045	2681	1.683385	CATGGAGCCACGATAGAGACA	59.317	52.381	0.00	0.00	41.38	3.41
2046	2682	1.000283	CCATGGAGCCACGATAGAGAC	60.000	57.143	5.56	0.00	41.38	3.36
2055	2691	0.107654	GGTGTAGACCATGGAGCCAC	60.108	60.000	21.47	17.55	42.59	5.01
2058	2694	0.179000	CTGGGTGTAGACCATGGAGC	59.821	60.000	21.47	10.13	45.25	4.70
2064	2700	2.454336	ATCGATCTGGGTGTAGACCA	57.546	50.000	11.75	0.00	45.25	4.02
2093	2736	5.335827	GTGTCTTCACAATGTCTCACTTC	57.664	43.478	0.00	0.00	43.37	3.01
2118	2765	6.303054	TCAATTTTACAGTCATCAGGGTTCA	58.697	36.000	0.00	0.00	0.00	3.18
2149	2796	3.008923	TCCAACTGCACAATGAGGTATGA	59.991	43.478	0.00	0.00	0.00	2.15
2167	2814	4.142004	GGTTCTATAGGCGTTTCTCTCCAA	60.142	45.833	0.00	0.00	0.00	3.53
2199	2846	4.770795	ACTGTTTGCTGAACTCTGTAACT	58.229	39.130	5.39	0.00	39.08	2.24
2257	2904	7.537596	ACTCTATATTGCTAGAGAATGTGCT	57.462	36.000	13.14	0.00	45.04	4.40
2258	2905	9.868277	ATAACTCTATATTGCTAGAGAATGTGC	57.132	33.333	13.14	0.00	45.04	4.57
2279	2932	6.098982	CCCATCCTCACTTTCAGTCTATAACT	59.901	42.308	0.00	0.00	39.44	2.24
2280	2933	6.098409	TCCCATCCTCACTTTCAGTCTATAAC	59.902	42.308	0.00	0.00	0.00	1.89
2281	2934	6.098409	GTCCCATCCTCACTTTCAGTCTATAA	59.902	42.308	0.00	0.00	0.00	0.98
2288	2941	3.199508	AGATGTCCCATCCTCACTTTCAG	59.800	47.826	0.74	0.00	0.00	3.02
2292	2945	1.842562	CCAGATGTCCCATCCTCACTT	59.157	52.381	0.74	0.00	0.00	3.16
2295	2948	1.971149	AACCAGATGTCCCATCCTCA	58.029	50.000	0.74	0.00	0.00	3.86
2338	2991	3.885297	TCTGCAGGGCAAAAATATAGCTC	59.115	43.478	15.13	0.00	38.41	4.09

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.