Multiple sequence alignment - TraesCS4A01G438500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G438500 chr4A 100.000 3025 0 0 1 3025 708323381 708320357 0.000000e+00 5587.0
1 TraesCS4A01G438500 chr7A 95.474 1193 39 4 857 2034 24592150 24593342 0.000000e+00 1890.0
2 TraesCS4A01G438500 chr7A 88.410 742 55 23 1 736 24591296 24592012 0.000000e+00 865.0
3 TraesCS4A01G438500 chr7A 81.356 118 11 6 719 825 24592034 24592151 5.370000e-13 86.1
4 TraesCS4A01G438500 chr7D 92.093 1328 73 17 814 2121 23495870 23497185 0.000000e+00 1842.0
5 TraesCS4A01G438500 chr7D 89.346 535 37 12 1 520 23495201 23495730 0.000000e+00 654.0
6 TraesCS4A01G438500 chr7D 90.566 53 5 0 2126 2178 591015999 591015947 1.500000e-08 71.3
7 TraesCS4A01G438500 chr5A 99.362 784 5 0 2242 3025 706598043 706597260 0.000000e+00 1421.0
8 TraesCS4A01G438500 chr4B 98.983 787 8 0 2239 3025 614065928 614065142 0.000000e+00 1410.0
9 TraesCS4A01G438500 chr3B 98.983 787 8 0 2239 3025 472586375 472585589 0.000000e+00 1410.0
10 TraesCS4A01G438500 chr3B 93.048 187 13 0 2839 3025 766024176 766023990 1.070000e-69 274.0
11 TraesCS4A01G438500 chr6B 98.852 784 9 0 2242 3025 674947644 674948427 0.000000e+00 1399.0
12 TraesCS4A01G438500 chr6B 84.118 340 38 7 813 1145 643395361 643395031 6.300000e-82 315.0
13 TraesCS4A01G438500 chr5B 96.831 789 24 1 2238 3025 50613966 50613178 0.000000e+00 1317.0
14 TraesCS4A01G438500 chr5B 96.071 789 29 2 2237 3025 584863742 584864528 0.000000e+00 1284.0
15 TraesCS4A01G438500 chr2B 96.578 789 23 2 2240 3025 772206585 772205798 0.000000e+00 1304.0
16 TraesCS4A01G438500 chr2D 96.315 787 27 1 2241 3025 525721867 525721081 0.000000e+00 1291.0
17 TraesCS4A01G438500 chrUn 97.463 670 16 1 2241 2910 364635507 364634839 0.000000e+00 1142.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G438500 chr4A 708320357 708323381 3024 True 5587.000000 5587 100.000000 1 3025 1 chr4A.!!$R1 3024
1 TraesCS4A01G438500 chr7A 24591296 24593342 2046 False 947.033333 1890 88.413333 1 2034 3 chr7A.!!$F1 2033
2 TraesCS4A01G438500 chr7D 23495201 23497185 1984 False 1248.000000 1842 90.719500 1 2121 2 chr7D.!!$F1 2120
3 TraesCS4A01G438500 chr5A 706597260 706598043 783 True 1421.000000 1421 99.362000 2242 3025 1 chr5A.!!$R1 783
4 TraesCS4A01G438500 chr4B 614065142 614065928 786 True 1410.000000 1410 98.983000 2239 3025 1 chr4B.!!$R1 786
5 TraesCS4A01G438500 chr3B 472585589 472586375 786 True 1410.000000 1410 98.983000 2239 3025 1 chr3B.!!$R1 786
6 TraesCS4A01G438500 chr6B 674947644 674948427 783 False 1399.000000 1399 98.852000 2242 3025 1 chr6B.!!$F1 783
7 TraesCS4A01G438500 chr5B 50613178 50613966 788 True 1317.000000 1317 96.831000 2238 3025 1 chr5B.!!$R1 787
8 TraesCS4A01G438500 chr5B 584863742 584864528 786 False 1284.000000 1284 96.071000 2237 3025 1 chr5B.!!$F1 788
9 TraesCS4A01G438500 chr2B 772205798 772206585 787 True 1304.000000 1304 96.578000 2240 3025 1 chr2B.!!$R1 785
10 TraesCS4A01G438500 chr2D 525721081 525721867 786 True 1291.000000 1291 96.315000 2241 3025 1 chr2D.!!$R1 784
11 TraesCS4A01G438500 chrUn 364634839 364635507 668 True 1142.000000 1142 97.463000 2241 2910 1 chrUn.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 253 0.031178 GGTTGCATGGGATTCGCATC 59.969 55.0 12.85 9.01 34.83 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2211 2306 0.110238 CAGAAACGTTGTGCGGGATG 60.11 55.0 0.0 0.0 46.52 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 1.117749 AGCTGGCGCATCAGGATAGA 61.118 55.000 10.83 0.00 39.10 1.98
160 161 3.607163 CCAGCATTTCATGGGCGT 58.393 55.556 0.00 0.00 32.63 5.68
242 244 5.437060 AGTTACATAGTTAGGTTGCATGGG 58.563 41.667 0.00 0.00 0.00 4.00
251 253 0.031178 GGTTGCATGGGATTCGCATC 59.969 55.000 12.85 9.01 34.83 3.91
258 260 0.957888 TGGGATTCGCATCGCAACAA 60.958 50.000 12.12 0.00 46.49 2.83
266 268 2.543848 TCGCATCGCAACAAATAGATCC 59.456 45.455 0.00 0.00 0.00 3.36
279 281 6.238648 ACAAATAGATCCTGGTTTCGAGTTT 58.761 36.000 0.00 0.00 0.00 2.66
290 292 3.562557 GGTTTCGAGTTTTTGTAGCTGGA 59.437 43.478 0.00 0.00 0.00 3.86
292 294 5.278315 GGTTTCGAGTTTTTGTAGCTGGAAT 60.278 40.000 0.00 0.00 29.68 3.01
298 300 9.221933 TCGAGTTTTTGTAGCTGGAATAATAAA 57.778 29.630 0.00 0.00 0.00 1.40
311 314 5.130350 GGAATAATAAAGCTACACCTGCCA 58.870 41.667 0.00 0.00 0.00 4.92
331 334 5.947228 CCACCTGGCATGTACTATTATTG 57.053 43.478 0.00 0.00 0.00 1.90
332 335 5.376625 CCACCTGGCATGTACTATTATTGT 58.623 41.667 0.00 0.00 0.00 2.71
333 336 5.470098 CCACCTGGCATGTACTATTATTGTC 59.530 44.000 0.00 0.00 0.00 3.18
334 337 5.177511 CACCTGGCATGTACTATTATTGTCG 59.822 44.000 0.00 0.00 0.00 4.35
335 338 5.163343 ACCTGGCATGTACTATTATTGTCGT 60.163 40.000 0.00 0.00 0.00 4.34
337 340 6.926826 CCTGGCATGTACTATTATTGTCGTAA 59.073 38.462 0.00 0.00 0.00 3.18
338 341 7.116376 CCTGGCATGTACTATTATTGTCGTAAG 59.884 40.741 0.00 0.00 0.00 2.34
354 361 2.915463 CGTAAGAGTGTTGATGACGGTC 59.085 50.000 0.00 0.00 43.02 4.79
357 364 0.736325 GAGTGTTGATGACGGTCGGG 60.736 60.000 3.34 0.00 0.00 5.14
402 413 9.896645 ATTGATCTTGTTATGTGTTAGAGACAT 57.103 29.630 0.00 0.00 41.10 3.06
436 448 3.599343 GTGCCACTGTCTATTCATGTCA 58.401 45.455 0.00 0.00 0.00 3.58
437 449 3.620374 GTGCCACTGTCTATTCATGTCAG 59.380 47.826 0.00 0.00 0.00 3.51
438 450 2.611292 GCCACTGTCTATTCATGTCAGC 59.389 50.000 0.00 0.00 0.00 4.26
439 451 3.681034 GCCACTGTCTATTCATGTCAGCT 60.681 47.826 0.00 0.00 0.00 4.24
441 453 3.869832 CACTGTCTATTCATGTCAGCTGG 59.130 47.826 15.13 0.00 0.00 4.85
442 454 3.517100 ACTGTCTATTCATGTCAGCTGGT 59.483 43.478 15.13 0.00 0.00 4.00
443 455 4.118410 CTGTCTATTCATGTCAGCTGGTC 58.882 47.826 15.13 8.33 0.00 4.02
459 472 2.489329 CTGGTCGAAGATTTGGCATTGT 59.511 45.455 0.00 0.00 40.67 2.71
470 483 9.949174 GAAGATTTGGCATTGTAAACAATTTTT 57.051 25.926 5.60 0.00 43.48 1.94
477 490 6.291385 GCATTGTAAACAATTTTTCTCGCTG 58.709 36.000 5.60 0.00 43.48 5.18
486 499 3.988379 TTTTTCTCGCTGTGCTTTCAT 57.012 38.095 0.00 0.00 0.00 2.57
490 503 0.169672 CTCGCTGTGCTTTCATTGGG 59.830 55.000 0.00 0.00 0.00 4.12
526 540 0.685785 TGGACAGTTTTTGCTGGGCA 60.686 50.000 0.00 0.00 40.59 5.36
561 575 2.007608 GTGTTCGGCCTTATGGTTCTC 58.992 52.381 0.00 0.00 35.27 2.87
567 581 3.263425 TCGGCCTTATGGTTCTCTTCTTT 59.737 43.478 0.00 0.00 35.27 2.52
580 594 6.039382 GGTTCTCTTCTTTTGGAACTTGCTTA 59.961 38.462 0.00 0.00 38.35 3.09
592 606 6.223852 TGGAACTTGCTTAGTCTTCTGTAAG 58.776 40.000 0.00 0.00 35.54 2.34
597 611 7.671302 ACTTGCTTAGTCTTCTGTAAGATCAA 58.329 34.615 0.00 0.00 43.50 2.57
599 613 9.809096 CTTGCTTAGTCTTCTGTAAGATCAATA 57.191 33.333 0.00 0.00 46.36 1.90
630 645 9.622004 CTGACTTATTTTCATGGATATTGATGC 57.378 33.333 0.00 0.00 0.00 3.91
631 646 8.291740 TGACTTATTTTCATGGATATTGATGCG 58.708 33.333 0.00 0.00 0.00 4.73
632 647 7.086376 ACTTATTTTCATGGATATTGATGCGC 58.914 34.615 0.00 0.00 0.00 6.09
633 648 3.921119 TTTCATGGATATTGATGCGCC 57.079 42.857 4.18 0.00 0.00 6.53
634 649 2.565046 TCATGGATATTGATGCGCCA 57.435 45.000 4.18 0.00 0.00 5.69
635 650 2.153645 TCATGGATATTGATGCGCCAC 58.846 47.619 4.18 0.00 0.00 5.01
636 651 1.881324 CATGGATATTGATGCGCCACA 59.119 47.619 4.18 1.45 0.00 4.17
637 652 2.049888 TGGATATTGATGCGCCACAA 57.950 45.000 16.24 16.24 0.00 3.33
638 653 1.948834 TGGATATTGATGCGCCACAAG 59.051 47.619 18.14 0.00 0.00 3.16
639 654 1.267806 GGATATTGATGCGCCACAAGG 59.732 52.381 18.14 0.00 38.23 3.61
640 655 2.221169 GATATTGATGCGCCACAAGGA 58.779 47.619 18.14 11.12 36.89 3.36
641 656 2.346766 TATTGATGCGCCACAAGGAT 57.653 45.000 18.14 7.63 36.89 3.24
642 657 2.346766 ATTGATGCGCCACAAGGATA 57.653 45.000 18.14 0.03 36.89 2.59
643 658 2.121291 TTGATGCGCCACAAGGATAA 57.879 45.000 4.18 0.00 36.89 1.75
644 659 1.667236 TGATGCGCCACAAGGATAAG 58.333 50.000 4.18 0.00 36.89 1.73
645 660 1.209261 TGATGCGCCACAAGGATAAGA 59.791 47.619 4.18 0.00 36.89 2.10
646 661 2.158769 TGATGCGCCACAAGGATAAGAT 60.159 45.455 4.18 0.00 36.89 2.40
654 669 6.398095 CGCCACAAGGATAAGATATGTCATA 58.602 40.000 0.00 0.00 36.89 2.15
686 701 3.392882 AGTTTTGCCAATTTGCAGTAGC 58.607 40.909 4.22 0.35 43.21 3.58
748 802 0.668401 GCAACATGAACAGGCCTTGC 60.668 55.000 0.00 3.77 0.00 4.01
786 849 6.534079 TGCAATCTCATAGATATTGATGCTCG 59.466 38.462 8.68 0.00 35.55 5.03
791 854 7.539436 TCTCATAGATATTGATGCTCGTAACC 58.461 38.462 0.00 0.00 0.00 2.85
795 858 2.225068 ATTGATGCTCGTAACCGGAG 57.775 50.000 9.46 0.00 33.95 4.63
838 914 7.267128 AGAACATTTGAGCAATTTTGAGAACA 58.733 30.769 0.00 0.00 0.00 3.18
840 916 7.473027 ACATTTGAGCAATTTTGAGAACAAG 57.527 32.000 0.00 0.00 37.32 3.16
841 917 7.043565 ACATTTGAGCAATTTTGAGAACAAGT 58.956 30.769 0.00 0.00 37.32 3.16
842 918 6.890663 TTTGAGCAATTTTGAGAACAAGTG 57.109 33.333 0.00 0.00 37.32 3.16
843 919 5.833406 TGAGCAATTTTGAGAACAAGTGA 57.167 34.783 0.00 0.00 37.32 3.41
844 920 6.206395 TGAGCAATTTTGAGAACAAGTGAA 57.794 33.333 0.00 0.00 37.32 3.18
846 922 5.351458 AGCAATTTTGAGAACAAGTGAACC 58.649 37.500 0.00 0.00 37.32 3.62
847 923 5.105392 AGCAATTTTGAGAACAAGTGAACCA 60.105 36.000 0.00 0.00 37.32 3.67
848 924 5.580297 GCAATTTTGAGAACAAGTGAACCAA 59.420 36.000 0.00 0.00 37.32 3.67
849 925 6.091986 GCAATTTTGAGAACAAGTGAACCAAA 59.908 34.615 0.00 0.00 37.32 3.28
853 932 4.792068 TGAGAACAAGTGAACCAAAGGAT 58.208 39.130 0.00 0.00 0.00 3.24
899 978 0.321653 ATGGACGCTTGTTCACCTCC 60.322 55.000 0.00 0.00 32.71 4.30
955 1037 9.367444 TCTTCTCCTTGTACGAGAATAATTTTC 57.633 33.333 12.02 0.00 43.56 2.29
1127 1222 1.366366 CCCTCGTCAACACCTTCGT 59.634 57.895 0.00 0.00 0.00 3.85
1431 1526 3.090037 CTCTCGTTCTTGTTCCCCTCTA 58.910 50.000 0.00 0.00 0.00 2.43
1481 1576 1.056750 GATTCGTTTCGTGCGACGG 59.943 57.895 8.46 0.00 42.81 4.79
1694 1789 4.329545 TCCAAGGGCGTGCTGGTC 62.330 66.667 0.00 0.00 0.00 4.02
1991 2086 1.021202 AGGAGAAGATCGTCGAGCTG 58.979 55.000 14.67 0.00 0.00 4.24
2006 2101 2.792890 CGAGCTGTACATGGAGAAGTCG 60.793 54.545 0.00 0.00 0.00 4.18
2037 2132 3.181450 CGAGGCTTGATTTTATCTCCCCT 60.181 47.826 0.00 0.00 0.00 4.79
2040 2135 5.204292 AGGCTTGATTTTATCTCCCCTTTC 58.796 41.667 0.00 0.00 0.00 2.62
2042 2137 5.658634 GGCTTGATTTTATCTCCCCTTTCTT 59.341 40.000 0.00 0.00 0.00 2.52
2045 2140 7.761704 GCTTGATTTTATCTCCCCTTTCTTTTC 59.238 37.037 0.00 0.00 0.00 2.29
2046 2141 8.956446 TTGATTTTATCTCCCCTTTCTTTTCT 57.044 30.769 0.00 0.00 0.00 2.52
2047 2142 8.956446 TGATTTTATCTCCCCTTTCTTTTCTT 57.044 30.769 0.00 0.00 0.00 2.52
2048 2143 9.379770 TGATTTTATCTCCCCTTTCTTTTCTTT 57.620 29.630 0.00 0.00 0.00 2.52
2076 2171 3.382546 GCACAGTGGCATTATGGATTTCT 59.617 43.478 1.84 0.00 0.00 2.52
2087 2182 7.387397 GGCATTATGGATTTCTTGTTTGTTGAA 59.613 33.333 0.00 0.00 0.00 2.69
2094 2189 9.829507 TGGATTTCTTGTTTGTTGAAATGTAAT 57.170 25.926 0.00 0.00 39.56 1.89
2148 2243 8.904099 ACATTACTAAACAGTAAAACAGAGCT 57.096 30.769 1.68 0.00 37.73 4.09
2149 2244 9.991906 ACATTACTAAACAGTAAAACAGAGCTA 57.008 29.630 1.68 0.00 37.73 3.32
2154 2249 9.694137 ACTAAACAGTAAAACAGAGCTAGTTAG 57.306 33.333 4.62 0.00 0.00 2.34
2155 2250 7.964604 AAACAGTAAAACAGAGCTAGTTAGG 57.035 36.000 4.62 0.00 0.00 2.69
2156 2251 6.912951 ACAGTAAAACAGAGCTAGTTAGGA 57.087 37.500 4.62 0.00 0.00 2.94
2157 2252 6.926313 ACAGTAAAACAGAGCTAGTTAGGAG 58.074 40.000 4.62 0.00 0.00 3.69
2158 2253 5.808030 CAGTAAAACAGAGCTAGTTAGGAGC 59.192 44.000 4.62 0.00 40.42 4.70
2159 2254 4.891992 AAAACAGAGCTAGTTAGGAGCA 57.108 40.909 4.62 0.00 42.69 4.26
2160 2255 5.428184 AAAACAGAGCTAGTTAGGAGCAT 57.572 39.130 4.62 0.00 42.69 3.79
2161 2256 4.664150 AACAGAGCTAGTTAGGAGCATC 57.336 45.455 2.39 0.00 42.69 3.91
2176 2271 3.774066 GAGCATCCACAGCCATTTAAAC 58.226 45.455 0.00 0.00 0.00 2.01
2177 2272 3.434309 AGCATCCACAGCCATTTAAACT 58.566 40.909 0.00 0.00 0.00 2.66
2178 2273 3.834231 AGCATCCACAGCCATTTAAACTT 59.166 39.130 0.00 0.00 0.00 2.66
2179 2274 5.016173 AGCATCCACAGCCATTTAAACTTA 58.984 37.500 0.00 0.00 0.00 2.24
2180 2275 5.658190 AGCATCCACAGCCATTTAAACTTAT 59.342 36.000 0.00 0.00 0.00 1.73
2181 2276 6.155049 AGCATCCACAGCCATTTAAACTTATT 59.845 34.615 0.00 0.00 0.00 1.40
2182 2277 7.341769 AGCATCCACAGCCATTTAAACTTATTA 59.658 33.333 0.00 0.00 0.00 0.98
2183 2278 8.143835 GCATCCACAGCCATTTAAACTTATTAT 58.856 33.333 0.00 0.00 0.00 1.28
2184 2279 9.467258 CATCCACAGCCATTTAAACTTATTATG 57.533 33.333 0.00 0.00 0.00 1.90
2185 2280 7.488322 TCCACAGCCATTTAAACTTATTATGC 58.512 34.615 0.00 0.00 0.00 3.14
2186 2281 6.701400 CCACAGCCATTTAAACTTATTATGCC 59.299 38.462 0.00 0.00 0.00 4.40
2187 2282 6.701400 CACAGCCATTTAAACTTATTATGCCC 59.299 38.462 0.00 0.00 0.00 5.36
2188 2283 6.382570 ACAGCCATTTAAACTTATTATGCCCA 59.617 34.615 0.00 0.00 0.00 5.36
2189 2284 7.071071 ACAGCCATTTAAACTTATTATGCCCAT 59.929 33.333 0.00 0.00 0.00 4.00
2190 2285 7.385752 CAGCCATTTAAACTTATTATGCCCATG 59.614 37.037 0.00 0.00 0.00 3.66
2191 2286 7.289782 AGCCATTTAAACTTATTATGCCCATGA 59.710 33.333 0.00 0.00 0.00 3.07
2192 2287 7.930865 GCCATTTAAACTTATTATGCCCATGAA 59.069 33.333 0.00 0.00 0.00 2.57
2193 2288 9.480053 CCATTTAAACTTATTATGCCCATGAAG 57.520 33.333 0.00 0.00 0.00 3.02
2198 2293 7.672983 AACTTATTATGCCCATGAAGATACG 57.327 36.000 0.00 0.00 0.00 3.06
2199 2294 6.769512 ACTTATTATGCCCATGAAGATACGT 58.230 36.000 0.00 0.00 0.00 3.57
2200 2295 6.650807 ACTTATTATGCCCATGAAGATACGTG 59.349 38.462 0.00 0.00 0.00 4.49
2201 2296 4.681074 TTATGCCCATGAAGATACGTGA 57.319 40.909 0.00 0.00 0.00 4.35
2202 2297 3.777106 ATGCCCATGAAGATACGTGAT 57.223 42.857 0.00 0.00 0.00 3.06
2203 2298 3.558931 TGCCCATGAAGATACGTGATT 57.441 42.857 0.00 0.00 0.00 2.57
2204 2299 3.466836 TGCCCATGAAGATACGTGATTC 58.533 45.455 0.00 0.00 0.00 2.52
2205 2300 3.118445 TGCCCATGAAGATACGTGATTCA 60.118 43.478 12.39 12.39 37.36 2.57
2206 2301 4.067896 GCCCATGAAGATACGTGATTCAT 58.932 43.478 15.03 15.03 42.81 2.57
2207 2302 4.153117 GCCCATGAAGATACGTGATTCATC 59.847 45.833 16.91 4.80 40.71 2.92
2208 2303 5.545588 CCCATGAAGATACGTGATTCATCT 58.454 41.667 16.91 6.80 40.71 2.90
2209 2304 5.407691 CCCATGAAGATACGTGATTCATCTG 59.592 44.000 16.91 11.27 40.71 2.90
2210 2305 5.987953 CCATGAAGATACGTGATTCATCTGT 59.012 40.000 16.91 2.32 40.71 3.41
2211 2306 6.145209 CCATGAAGATACGTGATTCATCTGTC 59.855 42.308 16.91 9.51 40.71 3.51
2212 2307 6.207691 TGAAGATACGTGATTCATCTGTCA 57.792 37.500 0.00 2.75 0.00 3.58
2213 2308 6.809869 TGAAGATACGTGATTCATCTGTCAT 58.190 36.000 0.00 0.00 0.00 3.06
2214 2309 6.920210 TGAAGATACGTGATTCATCTGTCATC 59.080 38.462 0.00 0.00 0.00 2.92
2215 2310 5.777802 AGATACGTGATTCATCTGTCATCC 58.222 41.667 0.00 0.00 0.00 3.51
2216 2311 3.185246 ACGTGATTCATCTGTCATCCC 57.815 47.619 0.00 0.00 0.00 3.85
2217 2312 2.130395 CGTGATTCATCTGTCATCCCG 58.870 52.381 0.00 0.00 0.00 5.14
2218 2313 1.869767 GTGATTCATCTGTCATCCCGC 59.130 52.381 0.00 0.00 0.00 6.13
2219 2314 1.485895 TGATTCATCTGTCATCCCGCA 59.514 47.619 0.00 0.00 0.00 5.69
2220 2315 1.869767 GATTCATCTGTCATCCCGCAC 59.130 52.381 0.00 0.00 0.00 5.34
2221 2316 0.612744 TTCATCTGTCATCCCGCACA 59.387 50.000 0.00 0.00 0.00 4.57
2222 2317 0.612744 TCATCTGTCATCCCGCACAA 59.387 50.000 0.00 0.00 0.00 3.33
2223 2318 0.729116 CATCTGTCATCCCGCACAAC 59.271 55.000 0.00 0.00 0.00 3.32
2224 2319 0.740868 ATCTGTCATCCCGCACAACG 60.741 55.000 0.00 0.00 43.15 4.10
2225 2320 1.667830 CTGTCATCCCGCACAACGT 60.668 57.895 0.00 0.00 41.42 3.99
2226 2321 1.227704 TGTCATCCCGCACAACGTT 60.228 52.632 0.00 0.00 41.42 3.99
2227 2322 0.816018 TGTCATCCCGCACAACGTTT 60.816 50.000 0.00 0.00 41.42 3.60
2228 2323 0.110373 GTCATCCCGCACAACGTTTC 60.110 55.000 0.00 0.00 41.42 2.78
2229 2324 0.250124 TCATCCCGCACAACGTTTCT 60.250 50.000 0.00 0.00 41.42 2.52
2230 2325 0.110238 CATCCCGCACAACGTTTCTG 60.110 55.000 0.00 0.00 41.42 3.02
2231 2326 1.852067 ATCCCGCACAACGTTTCTGC 61.852 55.000 15.02 15.02 41.42 4.26
2232 2327 2.051345 CCGCACAACGTTTCTGCC 60.051 61.111 17.90 5.18 41.42 4.85
2233 2328 2.712539 CGCACAACGTTTCTGCCA 59.287 55.556 17.90 0.00 36.87 4.92
2234 2329 1.282570 CGCACAACGTTTCTGCCAT 59.717 52.632 17.90 0.00 36.87 4.40
2235 2330 0.725784 CGCACAACGTTTCTGCCATC 60.726 55.000 17.90 0.00 36.87 3.51
2354 2449 4.220821 TCACTCTCGCAAAATAAGAGACCT 59.779 41.667 5.67 0.00 39.09 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 1.597461 GCTTGGCTCCTAAGACCGT 59.403 57.895 0.00 0.00 0.00 4.83
160 161 3.814625 TGTGGTGTGTGATGAGCTAAAA 58.185 40.909 0.00 0.00 0.00 1.52
224 226 4.214119 CGAATCCCATGCAACCTAACTATG 59.786 45.833 0.00 0.00 0.00 2.23
242 244 4.195744 TCTATTTGTTGCGATGCGAATC 57.804 40.909 0.00 0.00 0.00 2.52
251 253 4.662145 GAAACCAGGATCTATTTGTTGCG 58.338 43.478 0.00 0.00 0.00 4.85
258 260 6.715264 ACAAAAACTCGAAACCAGGATCTATT 59.285 34.615 0.00 0.00 0.00 1.73
266 268 4.527564 CAGCTACAAAAACTCGAAACCAG 58.472 43.478 0.00 0.00 0.00 4.00
290 292 4.887655 GGTGGCAGGTGTAGCTTTATTATT 59.112 41.667 0.00 0.00 0.00 1.40
292 294 3.521937 AGGTGGCAGGTGTAGCTTTATTA 59.478 43.478 0.00 0.00 0.00 0.98
298 300 2.596851 CCAGGTGGCAGGTGTAGCT 61.597 63.158 0.00 0.00 0.00 3.32
311 314 5.163343 ACGACAATAATAGTACATGCCAGGT 60.163 40.000 0.00 0.00 0.00 4.00
319 322 9.563898 CAACACTCTTACGACAATAATAGTACA 57.436 33.333 0.00 0.00 0.00 2.90
323 326 9.516314 TCATCAACACTCTTACGACAATAATAG 57.484 33.333 0.00 0.00 0.00 1.73
325 328 7.009265 CGTCATCAACACTCTTACGACAATAAT 59.991 37.037 0.00 0.00 0.00 1.28
328 331 4.621460 CGTCATCAACACTCTTACGACAAT 59.379 41.667 0.00 0.00 0.00 2.71
330 333 3.561503 CGTCATCAACACTCTTACGACA 58.438 45.455 0.00 0.00 0.00 4.35
331 334 2.915463 CCGTCATCAACACTCTTACGAC 59.085 50.000 0.00 0.00 0.00 4.34
332 335 2.555325 ACCGTCATCAACACTCTTACGA 59.445 45.455 0.00 0.00 0.00 3.43
333 336 2.915463 GACCGTCATCAACACTCTTACG 59.085 50.000 0.00 0.00 0.00 3.18
334 337 2.915463 CGACCGTCATCAACACTCTTAC 59.085 50.000 0.00 0.00 0.00 2.34
335 338 2.094906 CCGACCGTCATCAACACTCTTA 60.095 50.000 0.00 0.00 0.00 2.10
337 340 0.243907 CCGACCGTCATCAACACTCT 59.756 55.000 0.00 0.00 0.00 3.24
338 341 0.736325 CCCGACCGTCATCAACACTC 60.736 60.000 0.00 0.00 0.00 3.51
339 342 1.292223 CCCGACCGTCATCAACACT 59.708 57.895 0.00 0.00 0.00 3.55
340 343 1.740296 CCCCGACCGTCATCAACAC 60.740 63.158 0.00 0.00 0.00 3.32
341 344 2.660206 CCCCGACCGTCATCAACA 59.340 61.111 0.00 0.00 0.00 3.33
343 346 4.090588 GCCCCCGACCGTCATCAA 62.091 66.667 0.00 0.00 0.00 2.57
345 348 3.809374 GATGCCCCCGACCGTCATC 62.809 68.421 0.00 0.00 0.00 2.92
354 361 2.631160 TACAATACAAGATGCCCCCG 57.369 50.000 0.00 0.00 0.00 5.73
357 364 9.236006 AGATCAATTATACAATACAAGATGCCC 57.764 33.333 0.00 0.00 0.00 5.36
392 403 4.857588 CCGTGTGTTCAGTATGTCTCTAAC 59.142 45.833 0.00 0.00 37.40 2.34
402 413 0.531090 GTGGCACCGTGTGTTCAGTA 60.531 55.000 6.29 0.00 35.75 2.74
436 448 0.036732 TGCCAAATCTTCGACCAGCT 59.963 50.000 0.00 0.00 0.00 4.24
437 449 1.098050 ATGCCAAATCTTCGACCAGC 58.902 50.000 0.00 0.00 0.00 4.85
438 450 2.489329 ACAATGCCAAATCTTCGACCAG 59.511 45.455 0.00 0.00 0.00 4.00
439 451 2.513753 ACAATGCCAAATCTTCGACCA 58.486 42.857 0.00 0.00 0.00 4.02
441 453 5.457140 TGTTTACAATGCCAAATCTTCGAC 58.543 37.500 0.00 0.00 0.00 4.20
442 454 5.697473 TGTTTACAATGCCAAATCTTCGA 57.303 34.783 0.00 0.00 0.00 3.71
443 455 6.949578 ATTGTTTACAATGCCAAATCTTCG 57.050 33.333 7.28 0.00 44.22 3.79
459 472 5.181690 AGCACAGCGAGAAAAATTGTTTA 57.818 34.783 0.00 0.00 0.00 2.01
470 483 1.159285 CCAATGAAAGCACAGCGAGA 58.841 50.000 0.00 0.00 0.00 4.04
477 490 3.319122 ACTCTCAAACCCAATGAAAGCAC 59.681 43.478 0.00 0.00 0.00 4.40
486 499 4.100808 CCAAATCCAAACTCTCAAACCCAA 59.899 41.667 0.00 0.00 0.00 4.12
490 503 5.067805 ACTGTCCAAATCCAAACTCTCAAAC 59.932 40.000 0.00 0.00 0.00 2.93
561 575 6.625873 AGACTAAGCAAGTTCCAAAAGAAG 57.374 37.500 0.00 0.00 39.07 2.85
567 581 5.036117 ACAGAAGACTAAGCAAGTTCCAA 57.964 39.130 0.00 0.00 39.07 3.53
604 618 9.622004 GCATCAATATCCATGAAAATAAGTCAG 57.378 33.333 0.00 0.00 0.00 3.51
607 621 7.086376 GCGCATCAATATCCATGAAAATAAGT 58.914 34.615 0.30 0.00 0.00 2.24
610 624 5.476254 TGGCGCATCAATATCCATGAAAATA 59.524 36.000 10.83 0.00 0.00 1.40
624 639 2.016318 CTTATCCTTGTGGCGCATCAA 58.984 47.619 10.83 12.85 0.00 2.57
625 640 1.209261 TCTTATCCTTGTGGCGCATCA 59.791 47.619 10.83 4.43 0.00 3.07
626 641 1.953559 TCTTATCCTTGTGGCGCATC 58.046 50.000 10.83 1.19 0.00 3.91
627 642 2.645838 ATCTTATCCTTGTGGCGCAT 57.354 45.000 10.83 0.00 0.00 4.73
628 643 3.181455 ACATATCTTATCCTTGTGGCGCA 60.181 43.478 10.83 0.00 0.00 6.09
629 644 3.403038 ACATATCTTATCCTTGTGGCGC 58.597 45.455 0.00 0.00 0.00 6.53
630 645 4.631131 TGACATATCTTATCCTTGTGGCG 58.369 43.478 0.00 0.00 0.00 5.69
631 646 7.826252 ACATATGACATATCTTATCCTTGTGGC 59.174 37.037 10.38 0.00 0.00 5.01
654 669 7.861872 GCAAATTGGCAAAACTTTGAATTACAT 59.138 29.630 22.40 0.00 40.55 2.29
686 701 8.658609 CAATTGGAATATAAAAAGGCACAGTTG 58.341 33.333 0.00 0.00 0.00 3.16
689 704 7.223387 GCTCAATTGGAATATAAAAAGGCACAG 59.777 37.037 5.42 0.00 0.00 3.66
700 715 8.750515 TCTCAACATTGCTCAATTGGAATATA 57.249 30.769 5.42 0.00 0.00 0.86
706 721 5.319140 TCATCTCAACATTGCTCAATTGG 57.681 39.130 5.42 0.00 0.00 3.16
759 813 8.809468 AGCATCAATATCTATGAGATTGCAAT 57.191 30.769 12.83 12.83 39.97 3.56
763 817 9.578439 TTACGAGCATCAATATCTATGAGATTG 57.422 33.333 8.18 8.18 41.04 2.67
767 821 6.470556 CGGTTACGAGCATCAATATCTATGAG 59.529 42.308 0.00 0.00 44.60 2.90
768 822 6.322491 CGGTTACGAGCATCAATATCTATGA 58.678 40.000 0.00 0.00 44.60 2.15
770 824 5.417894 TCCGGTTACGAGCATCAATATCTAT 59.582 40.000 0.00 0.00 44.60 1.98
771 825 4.763279 TCCGGTTACGAGCATCAATATCTA 59.237 41.667 0.00 0.00 44.60 1.98
772 826 3.572682 TCCGGTTACGAGCATCAATATCT 59.427 43.478 0.00 0.00 44.60 1.98
786 849 5.240121 TGAATTACAAGAACCTCCGGTTAC 58.760 41.667 0.00 0.00 46.95 2.50
791 854 2.348666 CGCTGAATTACAAGAACCTCCG 59.651 50.000 0.00 0.00 0.00 4.63
795 858 4.451096 TGTTCTCGCTGAATTACAAGAACC 59.549 41.667 9.75 0.00 41.04 3.62
838 914 4.584743 GGTTCTTCATCCTTTGGTTCACTT 59.415 41.667 0.00 0.00 0.00 3.16
840 916 4.145052 AGGTTCTTCATCCTTTGGTTCAC 58.855 43.478 0.00 0.00 0.00 3.18
841 917 4.453480 AGGTTCTTCATCCTTTGGTTCA 57.547 40.909 0.00 0.00 0.00 3.18
842 918 6.887002 AGAATAGGTTCTTCATCCTTTGGTTC 59.113 38.462 0.00 0.00 41.92 3.62
843 919 6.660949 CAGAATAGGTTCTTCATCCTTTGGTT 59.339 38.462 0.00 0.00 41.92 3.67
844 920 6.183347 CAGAATAGGTTCTTCATCCTTTGGT 58.817 40.000 0.00 0.00 41.92 3.67
846 922 6.094603 CCACAGAATAGGTTCTTCATCCTTTG 59.905 42.308 0.00 0.00 41.92 2.77
847 923 6.183347 CCACAGAATAGGTTCTTCATCCTTT 58.817 40.000 0.00 0.00 41.92 3.11
848 924 5.749462 CCACAGAATAGGTTCTTCATCCTT 58.251 41.667 0.00 0.00 41.92 3.36
849 925 4.384647 GCCACAGAATAGGTTCTTCATCCT 60.385 45.833 0.00 0.00 41.92 3.24
853 932 3.307691 CCAGCCACAGAATAGGTTCTTCA 60.308 47.826 0.00 0.00 41.92 3.02
899 978 2.435586 CAGAGTTGGGCAGCGAGG 60.436 66.667 0.00 0.00 0.00 4.63
955 1037 2.093921 ACCACCAACCAAAAAGGAAACG 60.094 45.455 0.00 0.00 41.22 3.60
991 1074 0.470833 GGCCTCAGCATCCTCCTCTA 60.471 60.000 0.00 0.00 42.56 2.43
992 1075 1.765657 GGCCTCAGCATCCTCCTCT 60.766 63.158 0.00 0.00 42.56 3.69
1127 1222 2.562912 GGTTGTAGGCGTCGTCGA 59.437 61.111 6.17 0.00 39.71 4.20
1709 1804 1.223187 CGTTGTAGTTGTCCACCCAC 58.777 55.000 0.00 0.00 0.00 4.61
1859 1954 3.072468 CCCGGGTCGAGCAGGTTA 61.072 66.667 27.96 0.00 0.00 2.85
1991 2086 1.476891 TGAGCCGACTTCTCCATGTAC 59.523 52.381 0.00 0.00 0.00 2.90
2015 2110 3.142174 GGGGAGATAAAATCAAGCCTCG 58.858 50.000 0.00 0.00 0.00 4.63
2048 2143 4.769488 TCCATAATGCCACTGTGCTAAAAA 59.231 37.500 1.29 0.00 0.00 1.94
2076 2171 9.239002 CGGTTAGAATTACATTTCAACAAACAA 57.761 29.630 0.00 0.00 0.00 2.83
2122 2217 9.338622 AGCTCTGTTTTACTGTTTAGTAATGTT 57.661 29.630 1.21 0.00 45.93 2.71
2123 2218 8.904099 AGCTCTGTTTTACTGTTTAGTAATGT 57.096 30.769 1.21 0.00 45.93 2.71
2128 2223 9.694137 CTAACTAGCTCTGTTTTACTGTTTAGT 57.306 33.333 9.78 0.00 40.99 2.24
2129 2224 9.141400 CCTAACTAGCTCTGTTTTACTGTTTAG 57.859 37.037 9.78 0.24 0.00 1.85
2130 2225 8.863086 TCCTAACTAGCTCTGTTTTACTGTTTA 58.137 33.333 9.78 0.00 0.00 2.01
2131 2226 7.732996 TCCTAACTAGCTCTGTTTTACTGTTT 58.267 34.615 9.78 0.00 0.00 2.83
2132 2227 7.299246 TCCTAACTAGCTCTGTTTTACTGTT 57.701 36.000 9.78 0.00 0.00 3.16
2133 2228 6.572703 GCTCCTAACTAGCTCTGTTTTACTGT 60.573 42.308 9.78 0.00 37.01 3.55
2134 2229 5.808030 GCTCCTAACTAGCTCTGTTTTACTG 59.192 44.000 9.78 1.28 37.01 2.74
2135 2230 5.480772 TGCTCCTAACTAGCTCTGTTTTACT 59.519 40.000 9.78 0.00 40.73 2.24
2136 2231 5.721232 TGCTCCTAACTAGCTCTGTTTTAC 58.279 41.667 9.78 0.00 40.73 2.01
2137 2232 5.995565 TGCTCCTAACTAGCTCTGTTTTA 57.004 39.130 9.78 0.00 40.73 1.52
2138 2233 4.891992 TGCTCCTAACTAGCTCTGTTTT 57.108 40.909 9.78 0.00 40.73 2.43
2139 2234 4.141824 GGATGCTCCTAACTAGCTCTGTTT 60.142 45.833 9.78 0.00 40.73 2.83
2140 2235 3.386402 GGATGCTCCTAACTAGCTCTGTT 59.614 47.826 9.50 9.50 40.73 3.16
2141 2236 2.962421 GGATGCTCCTAACTAGCTCTGT 59.038 50.000 0.00 0.00 40.73 3.41
2142 2237 2.961741 TGGATGCTCCTAACTAGCTCTG 59.038 50.000 0.00 0.00 40.73 3.35
2143 2238 2.962421 GTGGATGCTCCTAACTAGCTCT 59.038 50.000 0.00 0.00 40.73 4.09
2144 2239 2.695666 TGTGGATGCTCCTAACTAGCTC 59.304 50.000 0.00 0.00 40.73 4.09
2145 2240 2.697751 CTGTGGATGCTCCTAACTAGCT 59.302 50.000 0.00 0.00 40.73 3.32
2146 2241 2.804933 GCTGTGGATGCTCCTAACTAGC 60.805 54.545 0.00 0.00 37.46 3.42
2147 2242 2.224161 GGCTGTGGATGCTCCTAACTAG 60.224 54.545 4.21 0.00 37.46 2.57
2148 2243 1.762957 GGCTGTGGATGCTCCTAACTA 59.237 52.381 4.21 0.00 37.46 2.24
2149 2244 0.543749 GGCTGTGGATGCTCCTAACT 59.456 55.000 4.21 0.00 37.46 2.24
2150 2245 0.253044 TGGCTGTGGATGCTCCTAAC 59.747 55.000 4.21 0.00 37.46 2.34
2151 2246 1.216064 ATGGCTGTGGATGCTCCTAA 58.784 50.000 4.21 0.00 37.46 2.69
2152 2247 1.216064 AATGGCTGTGGATGCTCCTA 58.784 50.000 4.21 0.00 37.46 2.94
2153 2248 0.333993 AAATGGCTGTGGATGCTCCT 59.666 50.000 4.21 0.00 37.46 3.69
2154 2249 2.057137 TAAATGGCTGTGGATGCTCC 57.943 50.000 0.00 0.00 36.96 4.70
2155 2250 3.445096 AGTTTAAATGGCTGTGGATGCTC 59.555 43.478 0.00 0.00 0.00 4.26
2156 2251 3.434309 AGTTTAAATGGCTGTGGATGCT 58.566 40.909 0.00 0.00 0.00 3.79
2157 2252 3.874392 AGTTTAAATGGCTGTGGATGC 57.126 42.857 0.00 0.00 0.00 3.91
2158 2253 9.467258 CATAATAAGTTTAAATGGCTGTGGATG 57.533 33.333 0.00 0.00 0.00 3.51
2159 2254 8.143835 GCATAATAAGTTTAAATGGCTGTGGAT 58.856 33.333 0.00 0.00 0.00 3.41
2160 2255 7.417342 GGCATAATAAGTTTAAATGGCTGTGGA 60.417 37.037 12.73 0.00 39.33 4.02
2161 2256 6.701400 GGCATAATAAGTTTAAATGGCTGTGG 59.299 38.462 12.73 0.00 39.33 4.17
2162 2257 6.701400 GGGCATAATAAGTTTAAATGGCTGTG 59.299 38.462 16.48 0.00 41.41 3.66
2163 2258 6.382570 TGGGCATAATAAGTTTAAATGGCTGT 59.617 34.615 16.48 0.00 41.41 4.40
2164 2259 6.815089 TGGGCATAATAAGTTTAAATGGCTG 58.185 36.000 16.48 0.00 41.41 4.85
2165 2260 7.289782 TCATGGGCATAATAAGTTTAAATGGCT 59.710 33.333 16.48 0.00 41.41 4.75
2166 2261 7.441017 TCATGGGCATAATAAGTTTAAATGGC 58.559 34.615 12.07 12.07 41.07 4.40
2167 2262 9.480053 CTTCATGGGCATAATAAGTTTAAATGG 57.520 33.333 0.00 0.00 0.00 3.16
2172 2267 9.214957 CGTATCTTCATGGGCATAATAAGTTTA 57.785 33.333 0.00 0.00 0.00 2.01
2173 2268 7.719633 ACGTATCTTCATGGGCATAATAAGTTT 59.280 33.333 0.00 0.00 0.00 2.66
2174 2269 7.173218 CACGTATCTTCATGGGCATAATAAGTT 59.827 37.037 0.00 0.00 0.00 2.66
2175 2270 6.650807 CACGTATCTTCATGGGCATAATAAGT 59.349 38.462 0.00 0.00 0.00 2.24
2176 2271 6.873605 TCACGTATCTTCATGGGCATAATAAG 59.126 38.462 0.00 0.00 0.00 1.73
2177 2272 6.764379 TCACGTATCTTCATGGGCATAATAA 58.236 36.000 0.00 0.00 0.00 1.40
2178 2273 6.353404 TCACGTATCTTCATGGGCATAATA 57.647 37.500 0.00 0.00 0.00 0.98
2179 2274 5.227569 TCACGTATCTTCATGGGCATAAT 57.772 39.130 0.00 0.00 0.00 1.28
2180 2275 4.681074 TCACGTATCTTCATGGGCATAA 57.319 40.909 0.00 0.00 0.00 1.90
2181 2276 4.890158 ATCACGTATCTTCATGGGCATA 57.110 40.909 0.00 0.00 0.00 3.14
2182 2277 3.777106 ATCACGTATCTTCATGGGCAT 57.223 42.857 0.00 0.00 0.00 4.40
2183 2278 3.118445 TGAATCACGTATCTTCATGGGCA 60.118 43.478 0.00 0.00 0.00 5.36
2184 2279 3.466836 TGAATCACGTATCTTCATGGGC 58.533 45.455 0.00 0.00 0.00 5.36
2185 2280 5.407691 CAGATGAATCACGTATCTTCATGGG 59.592 44.000 18.56 10.07 39.16 4.00
2186 2281 5.987953 ACAGATGAATCACGTATCTTCATGG 59.012 40.000 18.56 14.05 39.16 3.66
2187 2282 6.698766 TGACAGATGAATCACGTATCTTCATG 59.301 38.462 18.56 12.10 39.16 3.07
2188 2283 6.809869 TGACAGATGAATCACGTATCTTCAT 58.190 36.000 15.32 15.32 41.14 2.57
2189 2284 6.207691 TGACAGATGAATCACGTATCTTCA 57.792 37.500 8.50 8.50 33.75 3.02
2190 2285 6.364706 GGATGACAGATGAATCACGTATCTTC 59.635 42.308 0.00 0.00 0.00 2.87
2191 2286 6.219473 GGATGACAGATGAATCACGTATCTT 58.781 40.000 0.00 0.00 0.00 2.40
2192 2287 5.279206 GGGATGACAGATGAATCACGTATCT 60.279 44.000 0.00 0.00 0.00 1.98
2193 2288 4.926238 GGGATGACAGATGAATCACGTATC 59.074 45.833 0.00 0.00 0.00 2.24
2194 2289 4.559502 CGGGATGACAGATGAATCACGTAT 60.560 45.833 13.22 0.00 41.25 3.06
2195 2290 3.243401 CGGGATGACAGATGAATCACGTA 60.243 47.826 13.22 0.00 41.25 3.57
2196 2291 2.481969 CGGGATGACAGATGAATCACGT 60.482 50.000 13.22 0.00 41.25 4.49
2197 2292 2.130395 CGGGATGACAGATGAATCACG 58.870 52.381 9.36 9.36 40.46 4.35
2198 2293 1.869767 GCGGGATGACAGATGAATCAC 59.130 52.381 0.00 0.00 0.00 3.06
2199 2294 1.485895 TGCGGGATGACAGATGAATCA 59.514 47.619 0.00 0.00 0.00 2.57
2200 2295 1.869767 GTGCGGGATGACAGATGAATC 59.130 52.381 0.00 0.00 0.00 2.52
2201 2296 1.210234 TGTGCGGGATGACAGATGAAT 59.790 47.619 0.00 0.00 0.00 2.57
2202 2297 0.612744 TGTGCGGGATGACAGATGAA 59.387 50.000 0.00 0.00 0.00 2.57
2203 2298 0.612744 TTGTGCGGGATGACAGATGA 59.387 50.000 0.00 0.00 0.00 2.92
2204 2299 0.729116 GTTGTGCGGGATGACAGATG 59.271 55.000 0.00 0.00 0.00 2.90
2205 2300 0.740868 CGTTGTGCGGGATGACAGAT 60.741 55.000 0.00 0.00 36.85 2.90
2206 2301 1.374125 CGTTGTGCGGGATGACAGA 60.374 57.895 0.00 0.00 36.85 3.41
2207 2302 1.227999 AACGTTGTGCGGGATGACAG 61.228 55.000 0.00 0.00 46.52 3.51
2208 2303 0.816018 AAACGTTGTGCGGGATGACA 60.816 50.000 0.00 0.00 46.52 3.58
2209 2304 0.110373 GAAACGTTGTGCGGGATGAC 60.110 55.000 0.00 0.00 46.52 3.06
2210 2305 0.250124 AGAAACGTTGTGCGGGATGA 60.250 50.000 0.00 0.00 46.52 2.92
2211 2306 0.110238 CAGAAACGTTGTGCGGGATG 60.110 55.000 0.00 0.00 46.52 3.51
2212 2307 1.852067 GCAGAAACGTTGTGCGGGAT 61.852 55.000 17.32 0.00 46.52 3.85
2213 2308 2.539338 GCAGAAACGTTGTGCGGGA 61.539 57.895 17.32 0.00 46.52 5.14
2214 2309 2.051345 GCAGAAACGTTGTGCGGG 60.051 61.111 17.32 4.09 46.52 6.13
2218 2313 2.995466 ATGATGGCAGAAACGTTGTG 57.005 45.000 0.00 3.84 0.00 3.33
2219 2314 4.320608 AAAATGATGGCAGAAACGTTGT 57.679 36.364 0.00 0.00 0.00 3.32
2471 2567 1.518325 CATGCTTGTTACGTGGACCA 58.482 50.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.