Multiple sequence alignment - TraesCS4A01G437400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G437400 chr4A 100.000 3249 0 0 1 3249 707250125 707253373 0.000000e+00 6000.0
1 TraesCS4A01G437400 chr7D 89.326 1424 118 25 1835 3248 24423935 24422536 0.000000e+00 1757.0
2 TraesCS4A01G437400 chr7D 89.395 1141 88 15 2062 3194 24485580 24486695 0.000000e+00 1406.0
3 TraesCS4A01G437400 chr7D 91.003 867 59 5 913 1762 24424815 24423951 0.000000e+00 1151.0
4 TraesCS4A01G437400 chr7D 84.167 720 87 14 1060 1755 24501089 24500373 0.000000e+00 673.0
5 TraesCS4A01G437400 chr7D 89.823 452 37 3 1320 1762 24468944 24469395 3.640000e-159 571.0
6 TraesCS4A01G437400 chr7D 92.958 355 25 0 1408 1762 24430562 24430208 4.810000e-143 518.0
7 TraesCS4A01G437400 chr7D 89.100 422 35 8 913 1325 24439162 24439581 6.220000e-142 514.0
8 TraesCS4A01G437400 chr7D 77.876 565 95 17 1109 1646 127419036 127418475 1.120000e-84 324.0
9 TraesCS4A01G437400 chr7D 89.516 248 23 2 1813 2058 24469397 24469643 8.750000e-81 311.0
10 TraesCS4A01G437400 chr7D 94.340 53 3 0 1761 1813 148114542 148114490 7.470000e-12 82.4
11 TraesCS4A01G437400 chr7A 93.146 963 60 5 813 1770 24926341 24925380 0.000000e+00 1408.0
12 TraesCS4A01G437400 chr7A 89.755 654 56 7 1813 2463 24925380 24924735 0.000000e+00 826.0
13 TraesCS4A01G437400 chr7A 83.934 722 85 16 1060 1755 24959641 24958925 0.000000e+00 662.0
14 TraesCS4A01G437400 chr7A 78.114 562 99 12 1109 1646 127910044 127910605 5.190000e-88 335.0
15 TraesCS4A01G437400 chr7A 92.241 116 7 1 3 118 24926454 24926341 2.590000e-36 163.0
16 TraesCS4A01G437400 chr7A 93.333 60 4 0 1754 1813 330076889 330076830 4.460000e-14 89.8
17 TraesCS4A01G437400 chr7A 94.737 38 2 0 2631 2668 24923193 24923156 3.500000e-05 60.2
18 TraesCS4A01G437400 chr5B 80.952 525 83 13 52 573 227843236 227843746 1.820000e-107 399.0
19 TraesCS4A01G437400 chr7B 78.723 564 92 18 1109 1646 88974122 88974683 5.160000e-93 351.0
20 TraesCS4A01G437400 chr7B 86.127 173 24 0 1112 1284 89207080 89206908 1.540000e-43 187.0
21 TraesCS4A01G437400 chr2A 84.906 106 14 2 435 539 214906345 214906241 4.430000e-19 106.0
22 TraesCS4A01G437400 chrUn 96.226 53 2 0 1761 1813 10363143 10363091 1.610000e-13 87.9
23 TraesCS4A01G437400 chrUn 96.226 53 2 0 1761 1813 222286613 222286561 1.610000e-13 87.9
24 TraesCS4A01G437400 chrUn 96.226 53 2 0 1761 1813 239189890 239189942 1.610000e-13 87.9
25 TraesCS4A01G437400 chr4D 94.643 56 3 0 1758 1813 151247263 151247208 1.610000e-13 87.9
26 TraesCS4A01G437400 chr2D 92.857 56 4 0 1758 1813 638323091 638323146 7.470000e-12 82.4
27 TraesCS4A01G437400 chr1B 94.340 53 3 0 1761 1813 678279910 678279858 7.470000e-12 82.4
28 TraesCS4A01G437400 chr1A 94.340 53 3 0 1761 1813 576340877 576340825 7.470000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G437400 chr4A 707250125 707253373 3248 False 6000.0 6000 100.00000 1 3249 1 chr4A.!!$F1 3248
1 TraesCS4A01G437400 chr7D 24422536 24424815 2279 True 1454.0 1757 90.16450 913 3248 2 chr7D.!!$R5 2335
2 TraesCS4A01G437400 chr7D 24485580 24486695 1115 False 1406.0 1406 89.39500 2062 3194 1 chr7D.!!$F2 1132
3 TraesCS4A01G437400 chr7D 24500373 24501089 716 True 673.0 673 84.16700 1060 1755 1 chr7D.!!$R2 695
4 TraesCS4A01G437400 chr7D 24468944 24469643 699 False 441.0 571 89.66950 1320 2058 2 chr7D.!!$F3 738
5 TraesCS4A01G437400 chr7D 127418475 127419036 561 True 324.0 324 77.87600 1109 1646 1 chr7D.!!$R3 537
6 TraesCS4A01G437400 chr7A 24958925 24959641 716 True 662.0 662 83.93400 1060 1755 1 chr7A.!!$R1 695
7 TraesCS4A01G437400 chr7A 24923156 24926454 3298 True 614.3 1408 92.46975 3 2668 4 chr7A.!!$R3 2665
8 TraesCS4A01G437400 chr7A 127910044 127910605 561 False 335.0 335 78.11400 1109 1646 1 chr7A.!!$F1 537
9 TraesCS4A01G437400 chr5B 227843236 227843746 510 False 399.0 399 80.95200 52 573 1 chr5B.!!$F1 521
10 TraesCS4A01G437400 chr7B 88974122 88974683 561 False 351.0 351 78.72300 1109 1646 1 chr7B.!!$F1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 439 0.033503 TACCTCATCCGAGTCAGGCA 60.034 55.0 0.0 0.0 37.59 4.75 F
1051 1059 0.032403 CAGTACACGTTTCCCCGACA 59.968 55.0 0.0 0.0 0.00 4.35 F
1649 1713 0.108804 GTGACCATCACCATCGTCGT 60.109 55.0 0.0 0.0 41.37 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 1939 0.322816 AACTCGTCATGGCAGGCATT 60.323 50.000 6.76 0.0 0.0 3.56 R
2227 2308 1.448985 TATTCAGCCTTTGTCCGCAC 58.551 50.000 0.00 0.0 0.0 5.34 R
2730 4223 4.081807 TCTGATGGGCTGAAGATGATATCG 60.082 45.833 0.00 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.016130 ACTCTCGTGGCTGCATTTCG 61.016 55.000 0.50 0.37 0.00 3.46
76 77 3.814842 CGAAGGGCATCATATACTTGCAA 59.185 43.478 0.00 0.00 38.12 4.08
98 99 9.346005 TGCAATTGAAGTAATCATCATACATCT 57.654 29.630 10.34 0.00 38.03 2.90
119 120 3.728076 TCACTACCTCACGAATATGGC 57.272 47.619 0.00 0.00 0.00 4.40
127 128 2.267426 TCACGAATATGGCTGAACACG 58.733 47.619 0.00 0.00 0.00 4.49
133 134 2.831685 TATGGCTGAACACGTGTCTT 57.168 45.000 23.61 7.22 0.00 3.01
136 137 1.279840 GCTGAACACGTGTCTTGCC 59.720 57.895 23.61 9.53 0.00 4.52
147 148 1.377202 GTCTTGCCATCCGGAAGCA 60.377 57.895 24.30 24.30 33.97 3.91
150 151 1.779025 CTTGCCATCCGGAAGCATCG 61.779 60.000 27.37 19.13 36.20 3.84
151 152 2.203070 GCCATCCGGAAGCATCGT 60.203 61.111 21.49 0.00 0.00 3.73
152 153 2.247437 GCCATCCGGAAGCATCGTC 61.247 63.158 21.49 0.00 0.00 4.20
153 154 1.143838 CCATCCGGAAGCATCGTCA 59.856 57.895 9.01 0.00 0.00 4.35
154 155 0.877649 CCATCCGGAAGCATCGTCAG 60.878 60.000 9.01 0.00 0.00 3.51
155 156 0.103026 CATCCGGAAGCATCGTCAGA 59.897 55.000 9.01 0.00 0.00 3.27
160 161 1.201965 CGGAAGCATCGTCAGAAAAGC 60.202 52.381 0.00 0.00 0.00 3.51
166 167 2.426522 CATCGTCAGAAAAGCTTGGGA 58.573 47.619 0.00 0.00 0.00 4.37
173 174 2.494870 CAGAAAAGCTTGGGAGGGAATG 59.505 50.000 0.00 0.00 0.00 2.67
185 186 1.284785 GAGGGAATGGTGGGTCATTGA 59.715 52.381 0.00 0.00 37.47 2.57
194 195 4.222336 TGGTGGGTCATTGAACTTGAAAT 58.778 39.130 0.99 0.00 0.00 2.17
195 196 5.389520 TGGTGGGTCATTGAACTTGAAATA 58.610 37.500 0.99 0.00 0.00 1.40
196 197 5.835819 TGGTGGGTCATTGAACTTGAAATAA 59.164 36.000 0.99 0.00 0.00 1.40
197 198 6.496565 TGGTGGGTCATTGAACTTGAAATAAT 59.503 34.615 0.99 0.00 0.00 1.28
198 199 7.035612 GGTGGGTCATTGAACTTGAAATAATC 58.964 38.462 0.99 0.00 0.00 1.75
199 200 6.747280 GTGGGTCATTGAACTTGAAATAATCG 59.253 38.462 0.99 0.00 0.00 3.34
201 202 6.404734 GGGTCATTGAACTTGAAATAATCGCT 60.405 38.462 0.99 0.00 0.00 4.93
202 203 7.201696 GGGTCATTGAACTTGAAATAATCGCTA 60.202 37.037 0.99 0.00 0.00 4.26
212 213 8.524487 ACTTGAAATAATCGCTATAGAGTAGGG 58.476 37.037 3.21 0.00 0.00 3.53
218 219 4.383931 TCGCTATAGAGTAGGGAATGGT 57.616 45.455 3.21 0.00 34.27 3.55
220 221 3.127203 CGCTATAGAGTAGGGAATGGTCG 59.873 52.174 3.21 0.00 0.00 4.79
224 225 1.063567 AGAGTAGGGAATGGTCGCTCT 60.064 52.381 0.00 0.00 43.19 4.09
255 256 2.757099 CAACCCTGGAGCATGGCC 60.757 66.667 0.00 0.00 0.00 5.36
256 257 3.267233 AACCCTGGAGCATGGCCA 61.267 61.111 8.56 8.56 0.00 5.36
261 262 2.697263 TGGAGCATGGCCAGGGAT 60.697 61.111 20.75 8.83 0.00 3.85
263 264 2.281345 GAGCATGGCCAGGGATCG 60.281 66.667 20.75 0.00 0.00 3.69
266 267 1.970114 GCATGGCCAGGGATCGATG 60.970 63.158 20.75 6.96 0.00 3.84
269 270 3.877450 GGCCAGGGATCGATGCCA 61.877 66.667 33.93 0.00 41.29 4.92
322 323 6.459670 TCATTGACGTCCAAAGTAGCTATA 57.540 37.500 14.12 0.00 38.43 1.31
324 325 4.303086 TGACGTCCAAAGTAGCTATAGC 57.697 45.455 17.33 17.33 42.49 2.97
337 338 2.165319 CTATAGCAGCAGCAGCATCA 57.835 50.000 12.92 0.00 45.49 3.07
338 339 2.701107 CTATAGCAGCAGCAGCATCAT 58.299 47.619 12.92 4.85 45.49 2.45
339 340 1.524848 ATAGCAGCAGCAGCATCATC 58.475 50.000 12.92 0.00 45.49 2.92
340 341 0.878961 TAGCAGCAGCAGCATCATCG 60.879 55.000 12.92 0.00 45.49 3.84
341 342 2.470362 GCAGCAGCAGCATCATCGT 61.470 57.895 4.63 0.00 45.49 3.73
342 343 1.642215 CAGCAGCAGCATCATCGTC 59.358 57.895 3.17 0.00 45.49 4.20
343 344 1.881709 AGCAGCAGCATCATCGTCG 60.882 57.895 3.17 0.00 45.49 5.12
344 345 2.879070 GCAGCAGCATCATCGTCGG 61.879 63.158 0.00 0.00 41.58 4.79
345 346 1.227060 CAGCAGCATCATCGTCGGA 60.227 57.895 0.00 0.00 0.00 4.55
346 347 1.227089 AGCAGCATCATCGTCGGAC 60.227 57.895 0.00 0.00 0.00 4.79
347 348 2.580470 GCAGCATCATCGTCGGACG 61.580 63.158 23.73 23.73 44.19 4.79
356 357 3.990546 TCGTCGGACGATTCTTCAG 57.009 52.632 27.66 0.00 46.73 3.02
357 358 1.445871 TCGTCGGACGATTCTTCAGA 58.554 50.000 27.66 3.92 46.73 3.27
358 359 2.014857 TCGTCGGACGATTCTTCAGAT 58.985 47.619 27.66 0.00 46.73 2.90
359 360 2.112522 CGTCGGACGATTCTTCAGATG 58.887 52.381 25.29 0.00 46.05 2.90
360 361 2.223272 CGTCGGACGATTCTTCAGATGA 60.223 50.000 25.29 0.00 46.05 2.92
361 362 3.549019 CGTCGGACGATTCTTCAGATGAT 60.549 47.826 25.29 0.00 46.05 2.45
362 363 3.733224 GTCGGACGATTCTTCAGATGATG 59.267 47.826 0.00 0.00 0.00 3.07
363 364 3.632145 TCGGACGATTCTTCAGATGATGA 59.368 43.478 0.00 0.00 35.62 2.92
364 365 4.097892 TCGGACGATTCTTCAGATGATGAA 59.902 41.667 12.02 12.02 45.79 2.57
365 366 4.208047 CGGACGATTCTTCAGATGATGAAC 59.792 45.833 11.91 6.97 43.09 3.18
366 367 5.111989 GGACGATTCTTCAGATGATGAACA 58.888 41.667 11.91 0.00 43.09 3.18
367 368 5.757320 GGACGATTCTTCAGATGATGAACAT 59.243 40.000 11.91 0.29 43.09 2.71
368 369 6.925718 GGACGATTCTTCAGATGATGAACATA 59.074 38.462 11.91 0.00 43.09 2.29
369 370 7.095857 GGACGATTCTTCAGATGATGAACATAC 60.096 40.741 11.91 6.30 43.09 2.39
370 371 7.267857 ACGATTCTTCAGATGATGAACATACA 58.732 34.615 11.91 0.00 43.09 2.29
371 372 7.765819 ACGATTCTTCAGATGATGAACATACAA 59.234 33.333 11.91 0.00 43.09 2.41
372 373 8.606602 CGATTCTTCAGATGATGAACATACAAA 58.393 33.333 11.91 0.00 43.09 2.83
373 374 9.932699 GATTCTTCAGATGATGAACATACAAAG 57.067 33.333 11.91 0.00 43.09 2.77
374 375 8.853077 TTCTTCAGATGATGAACATACAAAGT 57.147 30.769 6.98 0.00 43.09 2.66
375 376 8.853077 TCTTCAGATGATGAACATACAAAGTT 57.147 30.769 0.00 0.00 43.09 2.66
376 377 8.724229 TCTTCAGATGATGAACATACAAAGTTG 58.276 33.333 0.00 0.00 43.09 3.16
377 378 7.381766 TCAGATGATGAACATACAAAGTTGG 57.618 36.000 0.00 0.00 39.56 3.77
378 379 6.942005 TCAGATGATGAACATACAAAGTTGGT 59.058 34.615 0.00 0.00 39.56 3.67
379 380 8.100164 TCAGATGATGAACATACAAAGTTGGTA 58.900 33.333 0.00 0.00 39.56 3.25
380 381 8.896744 CAGATGATGAACATACAAAGTTGGTAT 58.103 33.333 0.00 0.00 39.56 2.73
381 382 9.466497 AGATGATGAACATACAAAGTTGGTATT 57.534 29.630 0.00 0.00 39.56 1.89
407 408 8.837099 AAAATAATCATCCAAGTTATCCACCA 57.163 30.769 0.00 0.00 0.00 4.17
408 409 9.438163 AAAATAATCATCCAAGTTATCCACCAT 57.562 29.630 0.00 0.00 0.00 3.55
409 410 8.413309 AATAATCATCCAAGTTATCCACCATG 57.587 34.615 0.00 0.00 0.00 3.66
410 411 5.651612 ATCATCCAAGTTATCCACCATGA 57.348 39.130 0.00 0.00 0.00 3.07
411 412 5.651612 TCATCCAAGTTATCCACCATGAT 57.348 39.130 0.00 0.00 0.00 2.45
412 413 5.379187 TCATCCAAGTTATCCACCATGATG 58.621 41.667 0.00 0.00 0.00 3.07
413 414 5.132480 TCATCCAAGTTATCCACCATGATGA 59.868 40.000 0.00 0.00 0.00 2.92
414 415 5.449297 TCCAAGTTATCCACCATGATGAA 57.551 39.130 0.00 0.00 0.00 2.57
415 416 5.825532 TCCAAGTTATCCACCATGATGAAA 58.174 37.500 0.00 0.00 0.00 2.69
416 417 5.652014 TCCAAGTTATCCACCATGATGAAAC 59.348 40.000 0.00 0.00 0.00 2.78
417 418 5.163519 CCAAGTTATCCACCATGATGAAACC 60.164 44.000 0.00 0.00 0.00 3.27
418 419 5.191727 AGTTATCCACCATGATGAAACCA 57.808 39.130 0.00 0.00 0.00 3.67
419 420 5.769835 AGTTATCCACCATGATGAAACCAT 58.230 37.500 0.00 0.00 0.00 3.55
420 421 6.910191 AGTTATCCACCATGATGAAACCATA 58.090 36.000 0.00 0.00 0.00 2.74
421 422 6.772716 AGTTATCCACCATGATGAAACCATAC 59.227 38.462 0.00 0.00 0.00 2.39
422 423 3.897239 TCCACCATGATGAAACCATACC 58.103 45.455 0.00 0.00 0.00 2.73
423 424 3.527253 TCCACCATGATGAAACCATACCT 59.473 43.478 0.00 0.00 0.00 3.08
424 425 3.885297 CCACCATGATGAAACCATACCTC 59.115 47.826 0.00 0.00 0.00 3.85
425 426 4.525996 CACCATGATGAAACCATACCTCA 58.474 43.478 0.00 0.00 0.00 3.86
426 427 5.135383 CACCATGATGAAACCATACCTCAT 58.865 41.667 0.00 0.00 32.49 2.90
427 428 5.240183 CACCATGATGAAACCATACCTCATC 59.760 44.000 0.00 4.67 43.77 2.92
428 429 4.763793 CCATGATGAAACCATACCTCATCC 59.236 45.833 8.40 0.00 43.15 3.51
429 430 4.071961 TGATGAAACCATACCTCATCCG 57.928 45.455 8.40 0.00 43.15 4.18
430 431 3.709141 TGATGAAACCATACCTCATCCGA 59.291 43.478 8.40 0.00 43.15 4.55
431 432 3.819564 TGAAACCATACCTCATCCGAG 57.180 47.619 0.00 0.00 39.16 4.63
432 433 3.104512 TGAAACCATACCTCATCCGAGT 58.895 45.455 0.00 0.00 37.59 4.18
433 434 3.132289 TGAAACCATACCTCATCCGAGTC 59.868 47.826 0.00 0.00 37.59 3.36
434 435 2.454336 ACCATACCTCATCCGAGTCA 57.546 50.000 0.00 0.00 37.59 3.41
435 436 2.311463 ACCATACCTCATCCGAGTCAG 58.689 52.381 0.00 0.00 37.59 3.51
436 437 1.615883 CCATACCTCATCCGAGTCAGG 59.384 57.143 0.00 0.00 37.59 3.86
437 438 1.000283 CATACCTCATCCGAGTCAGGC 60.000 57.143 0.00 0.00 37.59 4.85
438 439 0.033503 TACCTCATCCGAGTCAGGCA 60.034 55.000 0.00 0.00 37.59 4.75
439 440 0.904865 ACCTCATCCGAGTCAGGCAA 60.905 55.000 0.00 0.00 37.59 4.52
440 441 0.250234 CCTCATCCGAGTCAGGCAAA 59.750 55.000 0.00 0.00 37.59 3.68
441 442 1.363744 CTCATCCGAGTCAGGCAAAC 58.636 55.000 0.00 0.00 34.29 2.93
442 443 0.684535 TCATCCGAGTCAGGCAAACA 59.315 50.000 0.00 0.00 0.00 2.83
443 444 0.798776 CATCCGAGTCAGGCAAACAC 59.201 55.000 0.00 0.00 0.00 3.32
444 445 0.321653 ATCCGAGTCAGGCAAACACC 60.322 55.000 0.00 0.00 0.00 4.16
445 446 1.966451 CCGAGTCAGGCAAACACCC 60.966 63.158 0.00 0.00 0.00 4.61
446 447 1.227823 CGAGTCAGGCAAACACCCA 60.228 57.895 0.00 0.00 0.00 4.51
447 448 0.817634 CGAGTCAGGCAAACACCCAA 60.818 55.000 0.00 0.00 0.00 4.12
448 449 1.398692 GAGTCAGGCAAACACCCAAA 58.601 50.000 0.00 0.00 0.00 3.28
449 450 1.338020 GAGTCAGGCAAACACCCAAAG 59.662 52.381 0.00 0.00 0.00 2.77
450 451 1.064017 AGTCAGGCAAACACCCAAAGA 60.064 47.619 0.00 0.00 0.00 2.52
451 452 1.963515 GTCAGGCAAACACCCAAAGAT 59.036 47.619 0.00 0.00 0.00 2.40
452 453 2.029918 GTCAGGCAAACACCCAAAGATC 60.030 50.000 0.00 0.00 0.00 2.75
453 454 2.158475 TCAGGCAAACACCCAAAGATCT 60.158 45.455 0.00 0.00 0.00 2.75
454 455 2.629617 CAGGCAAACACCCAAAGATCTT 59.370 45.455 0.88 0.88 0.00 2.40
455 456 2.629617 AGGCAAACACCCAAAGATCTTG 59.370 45.455 9.17 0.00 0.00 3.02
456 457 2.407090 GCAAACACCCAAAGATCTTGC 58.593 47.619 9.17 1.30 0.00 4.01
457 458 2.664916 CAAACACCCAAAGATCTTGCG 58.335 47.619 9.17 3.41 0.00 4.85
458 459 1.247567 AACACCCAAAGATCTTGCGG 58.752 50.000 9.17 13.50 0.00 5.69
459 460 0.609131 ACACCCAAAGATCTTGCGGG 60.609 55.000 29.50 29.50 40.27 6.13
460 461 1.678970 ACCCAAAGATCTTGCGGGC 60.679 57.895 30.44 0.00 38.84 6.13
461 462 2.764314 CCCAAAGATCTTGCGGGCG 61.764 63.158 23.67 10.78 31.75 6.13
462 463 2.764314 CCAAAGATCTTGCGGGCGG 61.764 63.158 9.17 0.00 0.00 6.13
463 464 3.134127 AAAGATCTTGCGGGCGGC 61.134 61.111 9.17 10.44 43.96 6.53
480 481 3.657350 CGATGGGGGTGGGGTGTT 61.657 66.667 0.00 0.00 0.00 3.32
481 482 2.037208 GATGGGGGTGGGGTGTTG 59.963 66.667 0.00 0.00 0.00 3.33
482 483 2.453497 ATGGGGGTGGGGTGTTGA 60.453 61.111 0.00 0.00 0.00 3.18
483 484 2.781431 GATGGGGGTGGGGTGTTGAC 62.781 65.000 0.00 0.00 0.00 3.18
484 485 4.653888 GGGGGTGGGGTGTTGACG 62.654 72.222 0.00 0.00 0.00 4.35
485 486 3.562232 GGGGTGGGGTGTTGACGA 61.562 66.667 0.00 0.00 0.00 4.20
486 487 2.032071 GGGTGGGGTGTTGACGAG 59.968 66.667 0.00 0.00 0.00 4.18
487 488 2.814835 GGGTGGGGTGTTGACGAGT 61.815 63.158 0.00 0.00 0.00 4.18
488 489 1.301479 GGTGGGGTGTTGACGAGTC 60.301 63.158 0.00 0.00 0.00 3.36
489 490 1.663702 GTGGGGTGTTGACGAGTCG 60.664 63.158 11.85 11.85 0.00 4.18
490 491 2.737376 GGGGTGTTGACGAGTCGC 60.737 66.667 13.59 6.23 0.00 5.19
492 493 2.050714 GGTGTTGACGAGTCGCGA 60.051 61.111 13.59 3.71 44.57 5.87
493 494 2.362800 GGTGTTGACGAGTCGCGAC 61.363 63.158 31.30 31.30 44.57 5.19
494 495 2.050714 TGTTGACGAGTCGCGACC 60.051 61.111 34.08 23.66 44.57 4.79
495 496 3.164011 GTTGACGAGTCGCGACCG 61.164 66.667 33.29 33.29 44.57 4.79
496 497 4.394078 TTGACGAGTCGCGACCGG 62.394 66.667 35.66 29.42 44.57 5.28
500 501 4.394078 CGAGTCGCGACCGGTGAA 62.394 66.667 34.08 0.00 44.57 3.18
501 502 2.181021 GAGTCGCGACCGGTGAAT 59.819 61.111 34.08 15.26 36.80 2.57
502 503 2.126071 AGTCGCGACCGGTGAATG 60.126 61.111 34.08 0.00 36.80 2.67
503 504 3.186047 GTCGCGACCGGTGAATGG 61.186 66.667 28.61 0.00 36.80 3.16
504 505 3.375239 TCGCGACCGGTGAATGGA 61.375 61.111 14.63 0.00 34.56 3.41
505 506 2.885644 CGCGACCGGTGAATGGAG 60.886 66.667 14.63 0.00 0.00 3.86
506 507 3.195698 GCGACCGGTGAATGGAGC 61.196 66.667 14.63 1.69 0.00 4.70
507 508 2.511600 CGACCGGTGAATGGAGCC 60.512 66.667 14.63 0.00 0.00 4.70
508 509 2.124695 GACCGGTGAATGGAGCCC 60.125 66.667 14.63 0.00 0.00 5.19
509 510 2.610859 ACCGGTGAATGGAGCCCT 60.611 61.111 6.12 0.00 0.00 5.19
510 511 2.190578 CCGGTGAATGGAGCCCTC 59.809 66.667 0.00 0.00 0.00 4.30
524 525 3.411517 CCTCCTTGGCCCGTCCAT 61.412 66.667 0.00 0.00 46.04 3.41
525 526 2.124570 CTCCTTGGCCCGTCCATG 60.125 66.667 0.00 0.00 46.04 3.66
528 529 2.124570 CTTGGCCCGTCCATGGAG 60.125 66.667 16.81 9.42 46.04 3.86
529 530 2.609299 TTGGCCCGTCCATGGAGA 60.609 61.111 16.81 0.00 46.04 3.71
530 531 1.987807 CTTGGCCCGTCCATGGAGAT 61.988 60.000 16.81 0.00 46.04 2.75
531 532 2.111878 GGCCCGTCCATGGAGATG 59.888 66.667 16.81 8.18 34.01 2.90
541 542 2.540265 CATGGAGATGGAGGCAGTAC 57.460 55.000 0.00 0.00 0.00 2.73
542 543 1.043816 ATGGAGATGGAGGCAGTACG 58.956 55.000 0.00 0.00 0.00 3.67
543 544 1.043116 TGGAGATGGAGGCAGTACGG 61.043 60.000 0.00 0.00 0.00 4.02
544 545 0.755698 GGAGATGGAGGCAGTACGGA 60.756 60.000 0.00 0.00 0.00 4.69
545 546 1.333177 GAGATGGAGGCAGTACGGAT 58.667 55.000 0.00 0.00 0.00 4.18
546 547 1.000283 GAGATGGAGGCAGTACGGATG 60.000 57.143 0.00 0.00 0.00 3.51
547 548 0.753262 GATGGAGGCAGTACGGATGT 59.247 55.000 0.00 0.00 0.00 3.06
548 549 0.753262 ATGGAGGCAGTACGGATGTC 59.247 55.000 0.00 0.00 0.00 3.06
549 550 1.065928 GGAGGCAGTACGGATGTCG 59.934 63.158 0.00 0.00 45.88 4.35
550 551 1.381928 GGAGGCAGTACGGATGTCGA 61.382 60.000 0.00 0.00 42.43 4.20
551 552 0.454600 GAGGCAGTACGGATGTCGAA 59.545 55.000 0.00 0.00 42.43 3.71
552 553 0.172803 AGGCAGTACGGATGTCGAAC 59.827 55.000 0.00 0.00 42.43 3.95
553 554 0.804933 GGCAGTACGGATGTCGAACC 60.805 60.000 0.00 0.00 42.43 3.62
554 555 0.804933 GCAGTACGGATGTCGAACCC 60.805 60.000 0.00 0.00 42.43 4.11
555 556 0.179119 CAGTACGGATGTCGAACCCC 60.179 60.000 0.00 0.00 42.43 4.95
556 557 1.142531 GTACGGATGTCGAACCCCC 59.857 63.158 0.00 0.00 42.43 5.40
557 558 1.305129 TACGGATGTCGAACCCCCA 60.305 57.895 0.00 0.00 42.43 4.96
558 559 1.606885 TACGGATGTCGAACCCCCAC 61.607 60.000 0.00 0.00 42.43 4.61
559 560 2.125269 GGATGTCGAACCCCCACG 60.125 66.667 0.00 0.00 0.00 4.94
560 561 2.818274 GATGTCGAACCCCCACGC 60.818 66.667 0.00 0.00 0.00 5.34
561 562 3.310860 GATGTCGAACCCCCACGCT 62.311 63.158 0.00 0.00 0.00 5.07
562 563 3.310860 ATGTCGAACCCCCACGCTC 62.311 63.158 0.00 0.00 0.00 5.03
563 564 3.692406 GTCGAACCCCCACGCTCT 61.692 66.667 0.00 0.00 0.00 4.09
564 565 2.920912 TCGAACCCCCACGCTCTT 60.921 61.111 0.00 0.00 0.00 2.85
565 566 2.434359 CGAACCCCCACGCTCTTC 60.434 66.667 0.00 0.00 0.00 2.87
566 567 2.434359 GAACCCCCACGCTCTTCG 60.434 66.667 0.00 0.00 45.38 3.79
567 568 3.952628 GAACCCCCACGCTCTTCGG 62.953 68.421 0.00 0.00 43.86 4.30
591 592 3.541713 CCGAGGAGTAGGCAGGCC 61.542 72.222 0.97 0.97 0.00 5.19
592 593 3.905678 CGAGGAGTAGGCAGGCCG 61.906 72.222 4.37 0.00 41.95 6.13
593 594 2.760385 GAGGAGTAGGCAGGCCGT 60.760 66.667 4.37 0.00 41.95 5.68
594 595 3.077556 AGGAGTAGGCAGGCCGTG 61.078 66.667 4.37 0.00 41.95 4.94
595 596 4.162690 GGAGTAGGCAGGCCGTGG 62.163 72.222 4.37 0.00 41.95 4.94
596 597 3.075005 GAGTAGGCAGGCCGTGGA 61.075 66.667 4.37 0.00 41.95 4.02
597 598 2.365635 AGTAGGCAGGCCGTGGAT 60.366 61.111 4.37 0.00 41.95 3.41
598 599 2.203070 GTAGGCAGGCCGTGGATG 60.203 66.667 4.37 0.00 41.95 3.51
599 600 2.687200 TAGGCAGGCCGTGGATGT 60.687 61.111 4.37 0.00 41.95 3.06
600 601 2.731571 TAGGCAGGCCGTGGATGTC 61.732 63.158 4.37 0.00 41.95 3.06
608 609 2.954868 CGTGGATGTCGCGGCTAC 60.955 66.667 13.81 5.65 44.78 3.58
609 610 2.183300 GTGGATGTCGCGGCTACA 59.817 61.111 13.81 9.89 0.00 2.74
610 611 1.447140 GTGGATGTCGCGGCTACAA 60.447 57.895 13.81 0.00 0.00 2.41
611 612 0.810031 GTGGATGTCGCGGCTACAAT 60.810 55.000 13.81 0.00 0.00 2.71
612 613 0.809636 TGGATGTCGCGGCTACAATG 60.810 55.000 13.81 0.00 0.00 2.82
613 614 0.529773 GGATGTCGCGGCTACAATGA 60.530 55.000 13.81 0.00 0.00 2.57
614 615 1.502231 GATGTCGCGGCTACAATGAT 58.498 50.000 13.81 0.00 0.00 2.45
615 616 1.193203 GATGTCGCGGCTACAATGATG 59.807 52.381 13.81 0.00 0.00 3.07
616 617 0.809636 TGTCGCGGCTACAATGATGG 60.810 55.000 13.81 0.00 0.00 3.51
617 618 1.887242 TCGCGGCTACAATGATGGC 60.887 57.895 6.13 0.00 0.00 4.40
618 619 2.179547 CGCGGCTACAATGATGGCA 61.180 57.895 0.00 0.00 0.00 4.92
619 620 1.650912 GCGGCTACAATGATGGCAG 59.349 57.895 0.00 0.00 0.00 4.85
620 621 0.815213 GCGGCTACAATGATGGCAGA 60.815 55.000 0.00 0.00 0.00 4.26
621 622 1.888215 CGGCTACAATGATGGCAGAT 58.112 50.000 0.00 0.00 0.00 2.90
622 623 1.802960 CGGCTACAATGATGGCAGATC 59.197 52.381 0.00 0.00 0.00 2.75
623 624 2.549563 CGGCTACAATGATGGCAGATCT 60.550 50.000 0.00 0.00 0.00 2.75
624 625 3.306294 CGGCTACAATGATGGCAGATCTA 60.306 47.826 0.00 0.00 0.00 1.98
625 626 4.252073 GGCTACAATGATGGCAGATCTAG 58.748 47.826 0.00 0.00 0.00 2.43
626 627 4.252073 GCTACAATGATGGCAGATCTAGG 58.748 47.826 0.00 0.00 0.00 3.02
627 628 3.137446 ACAATGATGGCAGATCTAGGC 57.863 47.619 0.00 3.30 0.00 3.93
628 629 2.440627 ACAATGATGGCAGATCTAGGCA 59.559 45.455 18.70 18.70 45.98 4.75
629 630 3.075148 CAATGATGGCAGATCTAGGCAG 58.925 50.000 20.22 8.23 45.09 4.85
630 631 1.798626 TGATGGCAGATCTAGGCAGT 58.201 50.000 20.22 12.13 45.09 4.40
631 632 1.415289 TGATGGCAGATCTAGGCAGTG 59.585 52.381 20.22 0.62 45.09 3.66
632 633 1.690893 GATGGCAGATCTAGGCAGTGA 59.309 52.381 20.22 4.21 45.09 3.41
633 634 1.798626 TGGCAGATCTAGGCAGTGAT 58.201 50.000 14.46 0.00 36.56 3.06
634 635 1.415289 TGGCAGATCTAGGCAGTGATG 59.585 52.381 14.46 0.00 36.56 3.07
635 636 1.270732 GGCAGATCTAGGCAGTGATGG 60.271 57.143 7.30 0.00 0.00 3.51
636 637 1.690893 GCAGATCTAGGCAGTGATGGA 59.309 52.381 0.00 0.00 0.00 3.41
637 638 2.302445 GCAGATCTAGGCAGTGATGGAT 59.698 50.000 0.00 0.00 0.00 3.41
638 639 3.865302 GCAGATCTAGGCAGTGATGGATG 60.865 52.174 0.00 0.00 0.00 3.51
639 640 2.302445 AGATCTAGGCAGTGATGGATGC 59.698 50.000 0.00 0.00 41.80 3.91
640 641 0.390492 TCTAGGCAGTGATGGATGCG 59.610 55.000 0.00 0.00 43.49 4.73
641 642 0.602106 CTAGGCAGTGATGGATGCGG 60.602 60.000 0.00 0.00 43.49 5.69
642 643 2.665008 TAGGCAGTGATGGATGCGGC 62.665 60.000 0.00 0.00 43.49 6.53
643 644 3.589881 GCAGTGATGGATGCGGCC 61.590 66.667 0.00 0.00 31.87 6.13
644 645 2.124612 CAGTGATGGATGCGGCCA 60.125 61.111 2.24 0.00 43.23 5.36
645 646 1.750018 CAGTGATGGATGCGGCCAA 60.750 57.895 2.24 0.00 42.16 4.52
646 647 1.750399 AGTGATGGATGCGGCCAAC 60.750 57.895 2.24 0.00 42.16 3.77
647 648 2.823593 TGATGGATGCGGCCAACG 60.824 61.111 2.24 0.00 42.16 4.10
659 660 2.350895 CCAACGATGGGGCTGTCA 59.649 61.111 3.28 0.00 43.51 3.58
660 661 1.746615 CCAACGATGGGGCTGTCAG 60.747 63.158 3.28 0.00 43.51 3.51
661 662 1.003355 CAACGATGGGGCTGTCAGT 60.003 57.895 0.93 0.00 0.00 3.41
662 663 1.003355 AACGATGGGGCTGTCAGTG 60.003 57.895 0.93 0.00 0.00 3.66
663 664 2.124983 CGATGGGGCTGTCAGTGG 60.125 66.667 0.93 0.00 0.00 4.00
664 665 2.659063 CGATGGGGCTGTCAGTGGA 61.659 63.158 0.93 0.00 0.00 4.02
665 666 1.078143 GATGGGGCTGTCAGTGGAC 60.078 63.158 0.93 0.00 44.57 4.02
673 674 3.188786 GTCAGTGGACGCGATGGC 61.189 66.667 15.93 0.49 33.68 4.40
674 675 3.690280 TCAGTGGACGCGATGGCA 61.690 61.111 15.93 0.00 39.92 4.92
675 676 3.190849 CAGTGGACGCGATGGCAG 61.191 66.667 15.93 0.00 39.92 4.85
676 677 4.457496 AGTGGACGCGATGGCAGG 62.457 66.667 15.93 0.00 39.92 4.85
699 700 2.789917 GCGATGTGCAGAAGCTGG 59.210 61.111 7.30 0.00 45.45 4.85
700 701 1.742880 GCGATGTGCAGAAGCTGGA 60.743 57.895 7.30 0.00 45.45 3.86
701 702 1.300971 GCGATGTGCAGAAGCTGGAA 61.301 55.000 7.30 0.00 45.45 3.53
702 703 0.725686 CGATGTGCAGAAGCTGGAAG 59.274 55.000 0.00 0.00 42.74 3.46
703 704 1.818642 GATGTGCAGAAGCTGGAAGT 58.181 50.000 0.00 0.00 42.74 3.01
704 705 1.467734 GATGTGCAGAAGCTGGAAGTG 59.532 52.381 0.00 0.00 42.74 3.16
705 706 0.535780 TGTGCAGAAGCTGGAAGTGG 60.536 55.000 0.00 0.00 42.74 4.00
706 707 1.073722 TGCAGAAGCTGGAAGTGGG 59.926 57.895 0.00 0.00 42.74 4.61
707 708 2.338785 GCAGAAGCTGGAAGTGGGC 61.339 63.158 0.00 0.00 37.91 5.36
708 709 2.037136 CAGAAGCTGGAAGTGGGCG 61.037 63.158 0.00 0.00 35.30 6.13
709 710 2.747855 GAAGCTGGAAGTGGGCGG 60.748 66.667 0.00 0.00 35.30 6.13
729 730 4.400961 GCACTGGCGAAGAGGGCT 62.401 66.667 0.00 0.00 0.00 5.19
730 731 2.435586 CACTGGCGAAGAGGGCTG 60.436 66.667 0.00 0.00 37.43 4.85
731 732 3.710722 ACTGGCGAAGAGGGCTGG 61.711 66.667 0.00 0.00 36.04 4.85
732 733 3.710722 CTGGCGAAGAGGGCTGGT 61.711 66.667 0.00 0.00 0.00 4.00
733 734 3.965539 CTGGCGAAGAGGGCTGGTG 62.966 68.421 0.00 0.00 0.00 4.17
735 736 4.400961 GCGAAGAGGGCTGGTGCT 62.401 66.667 0.00 0.00 39.59 4.40
736 737 3.019003 GCGAAGAGGGCTGGTGCTA 62.019 63.158 0.00 0.00 39.59 3.49
737 738 1.826024 CGAAGAGGGCTGGTGCTAT 59.174 57.895 0.00 0.00 39.59 2.97
738 739 0.179000 CGAAGAGGGCTGGTGCTATT 59.821 55.000 0.00 0.00 39.59 1.73
739 740 1.407437 CGAAGAGGGCTGGTGCTATTT 60.407 52.381 0.00 0.00 39.59 1.40
740 741 2.019984 GAAGAGGGCTGGTGCTATTTG 58.980 52.381 0.00 0.00 39.59 2.32
741 742 0.257039 AGAGGGCTGGTGCTATTTGG 59.743 55.000 0.00 0.00 39.59 3.28
742 743 0.753111 GAGGGCTGGTGCTATTTGGG 60.753 60.000 0.00 0.00 39.59 4.12
743 744 1.214305 AGGGCTGGTGCTATTTGGGA 61.214 55.000 0.00 0.00 39.59 4.37
744 745 0.753111 GGGCTGGTGCTATTTGGGAG 60.753 60.000 0.00 0.00 39.59 4.30
745 746 0.753111 GGCTGGTGCTATTTGGGAGG 60.753 60.000 0.00 0.00 39.59 4.30
746 747 0.753111 GCTGGTGCTATTTGGGAGGG 60.753 60.000 0.00 0.00 36.03 4.30
747 748 0.918983 CTGGTGCTATTTGGGAGGGA 59.081 55.000 0.00 0.00 0.00 4.20
748 749 0.918983 TGGTGCTATTTGGGAGGGAG 59.081 55.000 0.00 0.00 0.00 4.30
749 750 1.213296 GGTGCTATTTGGGAGGGAGA 58.787 55.000 0.00 0.00 0.00 3.71
750 751 1.564348 GGTGCTATTTGGGAGGGAGAA 59.436 52.381 0.00 0.00 0.00 2.87
751 752 2.175715 GGTGCTATTTGGGAGGGAGAAT 59.824 50.000 0.00 0.00 0.00 2.40
752 753 3.217626 GTGCTATTTGGGAGGGAGAATG 58.782 50.000 0.00 0.00 0.00 2.67
753 754 2.175499 TGCTATTTGGGAGGGAGAATGG 59.825 50.000 0.00 0.00 0.00 3.16
754 755 2.175715 GCTATTTGGGAGGGAGAATGGT 59.824 50.000 0.00 0.00 0.00 3.55
755 756 3.748989 GCTATTTGGGAGGGAGAATGGTC 60.749 52.174 0.00 0.00 0.00 4.02
756 757 2.059756 TTTGGGAGGGAGAATGGTCT 57.940 50.000 0.00 0.00 36.55 3.85
757 758 1.289160 TTGGGAGGGAGAATGGTCTG 58.711 55.000 0.00 0.00 32.80 3.51
758 759 0.119155 TGGGAGGGAGAATGGTCTGT 59.881 55.000 0.00 0.00 32.80 3.41
759 760 0.543749 GGGAGGGAGAATGGTCTGTG 59.456 60.000 0.00 0.00 32.80 3.66
760 761 1.280457 GGAGGGAGAATGGTCTGTGT 58.720 55.000 0.00 0.00 32.80 3.72
761 762 2.467880 GGAGGGAGAATGGTCTGTGTA 58.532 52.381 0.00 0.00 32.80 2.90
762 763 2.168728 GGAGGGAGAATGGTCTGTGTAC 59.831 54.545 0.00 0.00 32.80 2.90
763 764 2.168728 GAGGGAGAATGGTCTGTGTACC 59.831 54.545 0.00 0.00 40.19 3.34
770 771 0.821517 TGGTCTGTGTACCATAGGCG 59.178 55.000 0.00 0.00 44.68 5.52
771 772 0.104304 GGTCTGTGTACCATAGGCGG 59.896 60.000 0.00 0.00 39.50 6.13
772 773 0.104304 GTCTGTGTACCATAGGCGGG 59.896 60.000 0.00 0.00 0.00 6.13
773 774 1.227556 CTGTGTACCATAGGCGGGC 60.228 63.158 0.00 0.00 0.00 6.13
774 775 1.966901 CTGTGTACCATAGGCGGGCA 61.967 60.000 3.78 0.00 0.00 5.36
775 776 1.227556 GTGTACCATAGGCGGGCAG 60.228 63.158 3.78 0.00 0.00 4.85
776 777 2.426023 GTACCATAGGCGGGCAGG 59.574 66.667 3.78 5.25 0.00 4.85
792 793 2.284995 GGCCTGGGAGGACTCAGT 60.285 66.667 0.00 0.00 41.45 3.41
793 794 2.664081 GGCCTGGGAGGACTCAGTG 61.664 68.421 0.00 0.00 41.45 3.66
794 795 2.664081 GCCTGGGAGGACTCAGTGG 61.664 68.421 1.32 1.26 42.60 4.00
795 796 1.079256 CCTGGGAGGACTCAGTGGA 59.921 63.158 1.32 0.00 42.60 4.02
796 797 1.261238 CCTGGGAGGACTCAGTGGAC 61.261 65.000 1.32 0.00 42.60 4.02
797 798 0.542938 CTGGGAGGACTCAGTGGACA 60.543 60.000 1.32 0.00 39.57 4.02
798 799 0.105194 TGGGAGGACTCAGTGGACAA 60.105 55.000 1.32 0.00 0.00 3.18
799 800 1.056660 GGGAGGACTCAGTGGACAAA 58.943 55.000 1.32 0.00 0.00 2.83
800 801 1.420138 GGGAGGACTCAGTGGACAAAA 59.580 52.381 1.32 0.00 0.00 2.44
801 802 2.040412 GGGAGGACTCAGTGGACAAAAT 59.960 50.000 1.32 0.00 0.00 1.82
802 803 3.077359 GGAGGACTCAGTGGACAAAATG 58.923 50.000 1.32 0.00 0.00 2.32
803 804 3.077359 GAGGACTCAGTGGACAAAATGG 58.923 50.000 0.00 0.00 0.00 3.16
804 805 2.162681 GGACTCAGTGGACAAAATGGG 58.837 52.381 0.00 0.00 0.00 4.00
805 806 2.489073 GGACTCAGTGGACAAAATGGGT 60.489 50.000 0.00 0.00 0.00 4.51
806 807 2.814336 GACTCAGTGGACAAAATGGGTC 59.186 50.000 0.00 0.00 36.12 4.46
807 808 1.806542 CTCAGTGGACAAAATGGGTCG 59.193 52.381 0.00 0.00 36.12 4.79
808 809 0.881118 CAGTGGACAAAATGGGTCGG 59.119 55.000 0.00 0.00 36.12 4.79
809 810 0.893727 AGTGGACAAAATGGGTCGGC 60.894 55.000 0.00 0.00 36.12 5.54
810 811 1.969064 TGGACAAAATGGGTCGGCG 60.969 57.895 0.00 0.00 36.12 6.46
811 812 2.178273 GACAAAATGGGTCGGCGC 59.822 61.111 0.00 0.00 0.00 6.53
826 827 4.680237 CGCGTTGGAGCTGACCCA 62.680 66.667 0.00 0.00 34.40 4.51
829 830 1.648467 GCGTTGGAGCTGACCCATTC 61.648 60.000 0.00 0.00 33.04 2.67
835 836 0.169009 GAGCTGACCCATTCGTTTGC 59.831 55.000 0.00 0.00 0.00 3.68
839 840 1.131826 GACCCATTCGTTTGCGTCG 59.868 57.895 0.00 0.00 39.49 5.12
841 842 2.202298 CCATTCGTTTGCGTCGGC 60.202 61.111 0.00 0.00 39.49 5.54
862 864 1.726248 GCGTTGGCCATGATTTTTGTC 59.274 47.619 6.09 0.00 0.00 3.18
864 866 2.288702 CGTTGGCCATGATTTTTGTCCA 60.289 45.455 6.09 0.00 0.00 4.02
869 871 5.732633 TGGCCATGATTTTTGTCCATTTAG 58.267 37.500 0.00 0.00 0.00 1.85
871 873 5.812127 GGCCATGATTTTTGTCCATTTAGAC 59.188 40.000 0.00 0.00 37.28 2.59
885 887 8.092687 TGTCCATTTAGACTTAAACTAGTGGAC 58.907 37.037 25.12 25.12 45.12 4.02
888 890 3.213249 AGACTTAAACTAGTGGACGCG 57.787 47.619 3.53 3.53 0.00 6.01
905 907 2.014128 CGCGGACAGATAAAATGGGTT 58.986 47.619 0.00 0.00 0.00 4.11
1010 1014 4.998788 TCTCTATCATCCACGAACACAAG 58.001 43.478 0.00 0.00 0.00 3.16
1011 1015 4.705023 TCTCTATCATCCACGAACACAAGA 59.295 41.667 0.00 0.00 0.00 3.02
1051 1059 0.032403 CAGTACACGTTTCCCCGACA 59.968 55.000 0.00 0.00 0.00 4.35
1053 1061 1.345415 AGTACACGTTTCCCCGACAAT 59.655 47.619 0.00 0.00 0.00 2.71
1128 1147 1.132817 AGGAGGTTCCGGTGGCTATAT 60.133 52.381 0.00 0.00 42.75 0.86
1639 1703 4.408821 GCTGGCCGGTGACCATCA 62.409 66.667 14.55 0.00 36.36 3.07
1649 1713 0.108804 GTGACCATCACCATCGTCGT 60.109 55.000 0.00 0.00 41.37 4.34
1766 1836 5.746990 CCTAGCTAGCTTGGTACCATAAT 57.253 43.478 30.25 6.96 34.91 1.28
1767 1837 5.482908 CCTAGCTAGCTTGGTACCATAATG 58.517 45.833 30.25 7.81 34.91 1.90
1768 1838 5.012148 CCTAGCTAGCTTGGTACCATAATGT 59.988 44.000 30.25 1.73 34.91 2.71
1770 1840 6.494666 AGCTAGCTTGGTACCATAATGTAA 57.505 37.500 17.17 0.00 0.00 2.41
1772 1842 6.326583 AGCTAGCTTGGTACCATAATGTAAGA 59.673 38.462 17.17 0.00 0.00 2.10
1773 1843 7.016661 AGCTAGCTTGGTACCATAATGTAAGAT 59.983 37.037 17.17 9.48 0.00 2.40
1775 1845 6.900194 AGCTTGGTACCATAATGTAAGATGT 58.100 36.000 17.17 0.00 0.00 3.06
1776 1846 7.346471 AGCTTGGTACCATAATGTAAGATGTT 58.654 34.615 17.17 0.00 0.00 2.71
1777 1847 7.834181 AGCTTGGTACCATAATGTAAGATGTTT 59.166 33.333 17.17 0.00 0.00 2.83
1778 1848 8.466798 GCTTGGTACCATAATGTAAGATGTTTT 58.533 33.333 17.17 0.00 0.00 2.43
1800 1870 7.830940 TTTTTGACTCTAGTGTCGTGTTAAA 57.169 32.000 17.61 10.54 39.64 1.52
1801 1871 7.830940 TTTTGACTCTAGTGTCGTGTTAAAA 57.169 32.000 17.61 14.71 39.64 1.52
1802 1872 7.830940 TTTGACTCTAGTGTCGTGTTAAAAA 57.169 32.000 17.61 9.40 39.64 1.94
1830 1905 7.254387 CGTCTTACACCTATCTGTAGACTGTAC 60.254 44.444 0.00 0.00 30.54 2.90
1864 1939 1.410882 TCGATGATCCGTGCATGGTTA 59.589 47.619 24.24 12.20 0.00 2.85
1975 2054 5.196341 AGTCTCTCGTTGTGACATTTACA 57.804 39.130 12.79 0.00 40.51 2.41
2006 2085 5.588246 TGTTGCAGTGAAGAACAACTATTGA 59.412 36.000 10.59 0.00 42.22 2.57
2030 2109 4.634004 TGTAATAAGTTGCAATCGGGTCTG 59.366 41.667 0.59 0.00 0.00 3.51
2048 2127 5.471456 GGGTCTGATCTAATGTTTAGCATGG 59.529 44.000 0.00 0.00 37.96 3.66
2050 2129 5.528690 GTCTGATCTAATGTTTAGCATGGCA 59.471 40.000 0.00 0.00 37.96 4.92
2169 2249 7.175816 TGGATACATTTTTAAGCAGCACTACAA 59.824 33.333 0.00 0.00 46.17 2.41
2177 2257 9.587772 TTTTTAAGCAGCACTACAACAATTTTA 57.412 25.926 0.00 0.00 0.00 1.52
2178 2258 9.757227 TTTTAAGCAGCACTACAACAATTTTAT 57.243 25.926 0.00 0.00 0.00 1.40
2287 2369 5.738118 AACTTGTTGCATGTCCAAAAATG 57.262 34.783 0.00 0.00 0.00 2.32
2293 2376 4.241590 TGCATGTCCAAAAATGACACTC 57.758 40.909 0.00 0.00 44.85 3.51
2296 2379 4.919754 GCATGTCCAAAAATGACACTCTTC 59.080 41.667 0.00 0.00 44.85 2.87
2299 2382 4.638421 TGTCCAAAAATGACACTCTTCGTT 59.362 37.500 0.00 0.00 37.80 3.85
2321 2404 6.359617 CGTTGATGCTTGTTAAGGTTTAACTG 59.640 38.462 11.62 6.94 0.00 3.16
2431 2515 4.632153 ACCTCGGATAATGTAGCACAATC 58.368 43.478 0.00 0.00 0.00 2.67
2434 2518 6.014584 ACCTCGGATAATGTAGCACAATCATA 60.015 38.462 0.00 0.00 0.00 2.15
2440 2524 7.042456 GGATAATGTAGCACAATCATATAGGCG 60.042 40.741 0.00 0.00 0.00 5.52
2454 2538 6.764379 TCATATAGGCGTTGGTATTTCATGA 58.236 36.000 0.00 0.00 0.00 3.07
2492 2576 4.049186 ACCATGATAACAGCGATCGTAAC 58.951 43.478 17.81 0.00 0.00 2.50
2590 3930 3.733443 AACCAATCACAGGTTTCAAGC 57.267 42.857 0.00 0.00 46.85 4.01
2601 3941 4.590222 ACAGGTTTCAAGCAAAGATGGATT 59.410 37.500 0.00 0.00 0.00 3.01
2689 4182 3.245371 TGGTCAAAGGATGAAGCCAATCT 60.245 43.478 0.00 0.00 40.50 2.40
2731 4224 1.924524 CCAAGCACTATTGGTCGTACG 59.075 52.381 9.53 9.53 44.01 3.67
2765 4258 1.954382 CCCATCAGATTCTGCCACATG 59.046 52.381 8.89 7.33 0.00 3.21
2795 4289 4.640771 AGAAGGTTCTATGTTGAGCCAA 57.359 40.909 0.00 0.00 39.39 4.52
2815 4309 5.567423 GCCAACAGAATGAGCAAACCTAAAT 60.567 40.000 0.00 0.00 39.69 1.40
2817 4311 7.253422 CCAACAGAATGAGCAAACCTAAATAG 58.747 38.462 0.00 0.00 39.69 1.73
2818 4312 6.442513 ACAGAATGAGCAAACCTAAATAGC 57.557 37.500 0.00 0.00 39.69 2.97
2834 4330 9.961265 ACCTAAATAGCAGTTTTTCTTTGTTAC 57.039 29.630 0.00 0.00 0.00 2.50
2842 4338 8.131731 AGCAGTTTTTCTTTGTTACAGAATCTC 58.868 33.333 0.00 0.00 30.26 2.75
3051 4623 8.886719 TGATCTACAATTCACAAAGATCACATC 58.113 33.333 8.78 0.00 44.59 3.06
3052 4624 8.797350 ATCTACAATTCACAAAGATCACATCA 57.203 30.769 0.00 0.00 0.00 3.07
3056 4628 8.571461 ACAATTCACAAAGATCACATCATAGT 57.429 30.769 0.00 0.00 0.00 2.12
3073 4645 7.986320 ACATCATAGTCCTTCTCATTTCTTCTG 59.014 37.037 0.00 0.00 0.00 3.02
3081 4653 7.065683 GTCCTTCTCATTTCTTCTGGAATCTTC 59.934 40.741 0.00 0.00 33.53 2.87
3096 4668 4.439057 GAATCTTCCATACGTTAGTGCCA 58.561 43.478 0.00 0.00 0.00 4.92
3097 4669 3.965379 TCTTCCATACGTTAGTGCCAA 57.035 42.857 0.00 0.00 0.00 4.52
3099 4671 4.839121 TCTTCCATACGTTAGTGCCAAAT 58.161 39.130 0.00 0.00 0.00 2.32
3223 4797 8.384607 TGTCATACTAGCTACTGAGATACTTG 57.615 38.462 0.00 0.00 0.00 3.16
3229 4803 7.287061 ACTAGCTACTGAGATACTTGAGACAT 58.713 38.462 0.00 0.00 0.00 3.06
3230 4804 7.777910 ACTAGCTACTGAGATACTTGAGACATT 59.222 37.037 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 6.706716 GTGTAAGTCAAAAAGAGAGGCTAGTT 59.293 38.462 0.00 0.00 0.00 2.24
18 19 5.631512 CGAGAGTGTAAGTCAAAAAGAGAGG 59.368 44.000 0.00 0.00 39.29 3.69
55 56 5.972107 ATTGCAAGTATATGATGCCCTTC 57.028 39.130 4.94 0.00 39.31 3.46
98 99 3.704566 AGCCATATTCGTGAGGTAGTGAA 59.295 43.478 0.00 0.00 0.00 3.18
104 105 2.236146 TGTTCAGCCATATTCGTGAGGT 59.764 45.455 0.00 0.00 0.00 3.85
119 120 1.195448 GATGGCAAGACACGTGTTCAG 59.805 52.381 24.26 15.77 0.00 3.02
127 128 1.648467 GCTTCCGGATGGCAAGACAC 61.648 60.000 20.47 0.00 34.14 3.67
133 134 2.203056 CGATGCTTCCGGATGGCA 60.203 61.111 27.03 27.03 40.32 4.92
136 137 0.103026 TCTGACGATGCTTCCGGATG 59.897 55.000 4.15 9.44 0.00 3.51
147 148 2.616510 CCTCCCAAGCTTTTCTGACGAT 60.617 50.000 0.00 0.00 0.00 3.73
150 151 1.073923 TCCCTCCCAAGCTTTTCTGAC 59.926 52.381 0.00 0.00 0.00 3.51
151 152 1.444933 TCCCTCCCAAGCTTTTCTGA 58.555 50.000 0.00 0.00 0.00 3.27
152 153 2.292828 TTCCCTCCCAAGCTTTTCTG 57.707 50.000 0.00 0.00 0.00 3.02
153 154 2.558350 CCATTCCCTCCCAAGCTTTTCT 60.558 50.000 0.00 0.00 0.00 2.52
154 155 1.827344 CCATTCCCTCCCAAGCTTTTC 59.173 52.381 0.00 0.00 0.00 2.29
155 156 1.149923 ACCATTCCCTCCCAAGCTTTT 59.850 47.619 0.00 0.00 0.00 2.27
160 161 1.307647 CCCACCATTCCCTCCCAAG 59.692 63.158 0.00 0.00 0.00 3.61
166 167 1.381867 TCAATGACCCACCATTCCCT 58.618 50.000 0.00 0.00 34.77 4.20
173 174 4.871933 ATTTCAAGTTCAATGACCCACC 57.128 40.909 0.00 0.00 0.00 4.61
185 186 9.915629 CCTACTCTATAGCGATTATTTCAAGTT 57.084 33.333 0.00 0.00 0.00 2.66
194 195 6.491383 ACCATTCCCTACTCTATAGCGATTA 58.509 40.000 0.00 0.00 0.00 1.75
195 196 5.334421 ACCATTCCCTACTCTATAGCGATT 58.666 41.667 0.00 0.00 0.00 3.34
196 197 4.936802 ACCATTCCCTACTCTATAGCGAT 58.063 43.478 0.00 0.00 0.00 4.58
197 198 4.333690 GACCATTCCCTACTCTATAGCGA 58.666 47.826 0.00 0.00 0.00 4.93
198 199 3.127203 CGACCATTCCCTACTCTATAGCG 59.873 52.174 0.00 0.00 0.00 4.26
199 200 3.119424 GCGACCATTCCCTACTCTATAGC 60.119 52.174 0.00 0.00 0.00 2.97
201 202 4.043059 AGAGCGACCATTCCCTACTCTATA 59.957 45.833 0.00 0.00 31.52 1.31
202 203 3.158676 GAGCGACCATTCCCTACTCTAT 58.841 50.000 0.00 0.00 0.00 1.98
212 213 2.663826 AACAGAGAGAGCGACCATTC 57.336 50.000 0.00 0.00 0.00 2.67
218 219 3.007635 TGAATCGTAACAGAGAGAGCGA 58.992 45.455 0.00 0.00 0.00 4.93
220 221 3.860536 GGTTGAATCGTAACAGAGAGAGC 59.139 47.826 0.00 0.00 0.00 4.09
224 225 3.056107 CCAGGGTTGAATCGTAACAGAGA 60.056 47.826 0.00 0.00 0.00 3.10
255 256 2.154462 GGTTTATGGCATCGATCCCTG 58.846 52.381 6.97 0.00 0.00 4.45
256 257 2.057922 AGGTTTATGGCATCGATCCCT 58.942 47.619 6.97 0.58 0.00 4.20
257 258 2.554032 CAAGGTTTATGGCATCGATCCC 59.446 50.000 1.65 0.00 0.00 3.85
291 292 2.892374 TGGACGTCAATGAGCACATAG 58.108 47.619 18.91 0.00 35.50 2.23
292 293 3.326836 TTGGACGTCAATGAGCACATA 57.673 42.857 18.91 0.00 35.50 2.29
322 323 2.180862 CGATGATGCTGCTGCTGCT 61.181 57.895 27.67 15.76 40.48 4.24
324 325 1.642215 GACGATGATGCTGCTGCTG 59.358 57.895 17.00 0.77 40.48 4.41
327 328 1.227060 TCCGACGATGATGCTGCTG 60.227 57.895 0.00 0.00 0.00 4.41
328 329 1.227089 GTCCGACGATGATGCTGCT 60.227 57.895 0.00 0.00 0.00 4.24
329 330 2.580470 CGTCCGACGATGATGCTGC 61.580 63.158 16.03 0.00 46.05 5.25
330 331 1.064134 TCGTCCGACGATGATGCTG 59.936 57.895 19.51 0.00 46.73 4.41
331 332 3.509659 TCGTCCGACGATGATGCT 58.490 55.556 19.51 0.00 46.73 3.79
339 340 2.112522 CATCTGAAGAATCGTCCGACG 58.887 52.381 14.94 14.94 44.19 5.12
340 341 3.422417 TCATCTGAAGAATCGTCCGAC 57.578 47.619 0.00 0.00 0.00 4.79
341 342 3.632145 TCATCATCTGAAGAATCGTCCGA 59.368 43.478 0.00 0.00 0.00 4.55
342 343 3.969899 TCATCATCTGAAGAATCGTCCG 58.030 45.455 0.00 0.00 0.00 4.79
343 344 5.111989 TGTTCATCATCTGAAGAATCGTCC 58.888 41.667 1.68 0.00 44.44 4.79
344 345 6.841443 ATGTTCATCATCTGAAGAATCGTC 57.159 37.500 1.68 0.00 44.44 4.20
345 346 7.267857 TGTATGTTCATCATCTGAAGAATCGT 58.732 34.615 1.68 1.45 44.44 3.73
346 347 7.704789 TGTATGTTCATCATCTGAAGAATCG 57.295 36.000 1.68 0.00 44.44 3.34
347 348 9.932699 CTTTGTATGTTCATCATCTGAAGAATC 57.067 33.333 1.68 0.00 44.44 2.52
348 349 9.458727 ACTTTGTATGTTCATCATCTGAAGAAT 57.541 29.630 1.68 0.00 44.44 2.40
349 350 8.853077 ACTTTGTATGTTCATCATCTGAAGAA 57.147 30.769 0.00 0.00 44.44 2.52
350 351 8.724229 CAACTTTGTATGTTCATCATCTGAAGA 58.276 33.333 0.00 0.00 44.44 2.87
351 352 7.966753 CCAACTTTGTATGTTCATCATCTGAAG 59.033 37.037 0.00 0.00 44.44 3.02
352 353 7.448161 ACCAACTTTGTATGTTCATCATCTGAA 59.552 33.333 0.00 0.00 41.61 3.02
353 354 6.942005 ACCAACTTTGTATGTTCATCATCTGA 59.058 34.615 0.00 0.00 37.91 3.27
354 355 7.149569 ACCAACTTTGTATGTTCATCATCTG 57.850 36.000 0.00 0.00 37.91 2.90
355 356 9.466497 AATACCAACTTTGTATGTTCATCATCT 57.534 29.630 0.00 0.00 37.91 2.90
381 382 9.928618 TGGTGGATAACTTGGATGATTATTTTA 57.071 29.630 0.00 0.00 0.00 1.52
382 383 8.837099 TGGTGGATAACTTGGATGATTATTTT 57.163 30.769 0.00 0.00 0.00 1.82
383 384 8.863086 CATGGTGGATAACTTGGATGATTATTT 58.137 33.333 0.00 0.00 0.00 1.40
384 385 8.226810 TCATGGTGGATAACTTGGATGATTATT 58.773 33.333 0.00 0.00 0.00 1.40
385 386 7.758609 TCATGGTGGATAACTTGGATGATTAT 58.241 34.615 0.00 0.00 0.00 1.28
386 387 7.147958 TCATGGTGGATAACTTGGATGATTA 57.852 36.000 0.00 0.00 0.00 1.75
387 388 6.017211 TCATGGTGGATAACTTGGATGATT 57.983 37.500 0.00 0.00 0.00 2.57
388 389 5.651612 TCATGGTGGATAACTTGGATGAT 57.348 39.130 0.00 0.00 0.00 2.45
389 390 5.132480 TCATCATGGTGGATAACTTGGATGA 59.868 40.000 6.03 0.00 36.69 2.92
390 391 5.379187 TCATCATGGTGGATAACTTGGATG 58.621 41.667 6.03 0.00 34.00 3.51
391 392 5.651612 TCATCATGGTGGATAACTTGGAT 57.348 39.130 6.03 0.00 0.00 3.41
392 393 5.449297 TTCATCATGGTGGATAACTTGGA 57.551 39.130 6.03 0.00 0.00 3.53
393 394 5.163519 GGTTTCATCATGGTGGATAACTTGG 60.164 44.000 6.03 0.00 0.00 3.61
394 395 5.418524 TGGTTTCATCATGGTGGATAACTTG 59.581 40.000 6.03 0.00 0.00 3.16
395 396 5.579047 TGGTTTCATCATGGTGGATAACTT 58.421 37.500 6.03 0.00 0.00 2.66
396 397 5.191727 TGGTTTCATCATGGTGGATAACT 57.808 39.130 6.03 0.00 0.00 2.24
397 398 6.016276 GGTATGGTTTCATCATGGTGGATAAC 60.016 42.308 6.03 8.30 34.96 1.89
398 399 6.068010 GGTATGGTTTCATCATGGTGGATAA 58.932 40.000 6.03 0.00 34.96 1.75
399 400 5.372363 AGGTATGGTTTCATCATGGTGGATA 59.628 40.000 6.03 0.00 34.96 2.59
400 401 4.168675 AGGTATGGTTTCATCATGGTGGAT 59.831 41.667 6.03 0.00 34.96 3.41
401 402 3.527253 AGGTATGGTTTCATCATGGTGGA 59.473 43.478 6.03 0.00 34.96 4.02
402 403 3.885297 GAGGTATGGTTTCATCATGGTGG 59.115 47.826 6.03 0.00 34.96 4.61
403 404 4.525996 TGAGGTATGGTTTCATCATGGTG 58.474 43.478 0.00 0.00 34.96 4.17
404 405 4.860802 TGAGGTATGGTTTCATCATGGT 57.139 40.909 0.00 0.00 34.96 3.55
405 406 4.763793 GGATGAGGTATGGTTTCATCATGG 59.236 45.833 13.70 0.00 45.65 3.66
406 407 4.453478 CGGATGAGGTATGGTTTCATCATG 59.547 45.833 13.70 0.00 45.65 3.07
407 408 4.347876 TCGGATGAGGTATGGTTTCATCAT 59.652 41.667 13.70 1.54 45.65 2.45
408 409 3.709141 TCGGATGAGGTATGGTTTCATCA 59.291 43.478 13.70 0.00 45.65 3.07
409 410 4.310769 CTCGGATGAGGTATGGTTTCATC 58.689 47.826 5.39 5.39 44.01 2.92
410 411 4.342862 CTCGGATGAGGTATGGTTTCAT 57.657 45.455 0.00 0.00 38.65 2.57
411 412 3.819564 CTCGGATGAGGTATGGTTTCA 57.180 47.619 0.00 0.00 38.65 2.69
423 424 0.684535 TGTTTGCCTGACTCGGATGA 59.315 50.000 0.00 0.00 0.00 2.92
424 425 0.798776 GTGTTTGCCTGACTCGGATG 59.201 55.000 0.00 0.00 0.00 3.51
425 426 0.321653 GGTGTTTGCCTGACTCGGAT 60.322 55.000 0.00 0.00 0.00 4.18
426 427 1.070786 GGTGTTTGCCTGACTCGGA 59.929 57.895 0.00 0.00 0.00 4.55
427 428 1.966451 GGGTGTTTGCCTGACTCGG 60.966 63.158 0.00 0.00 0.00 4.63
428 429 0.817634 TTGGGTGTTTGCCTGACTCG 60.818 55.000 0.00 0.00 0.00 4.18
429 430 1.338020 CTTTGGGTGTTTGCCTGACTC 59.662 52.381 0.00 0.00 0.00 3.36
430 431 1.064017 TCTTTGGGTGTTTGCCTGACT 60.064 47.619 0.00 0.00 0.00 3.41
431 432 1.398692 TCTTTGGGTGTTTGCCTGAC 58.601 50.000 0.00 0.00 0.00 3.51
432 433 2.158475 AGATCTTTGGGTGTTTGCCTGA 60.158 45.455 0.00 0.00 0.00 3.86
433 434 2.242043 AGATCTTTGGGTGTTTGCCTG 58.758 47.619 0.00 0.00 0.00 4.85
434 435 2.629617 CAAGATCTTTGGGTGTTTGCCT 59.370 45.455 4.86 0.00 0.00 4.75
435 436 2.867647 GCAAGATCTTTGGGTGTTTGCC 60.868 50.000 4.86 0.00 34.85 4.52
436 437 2.407090 GCAAGATCTTTGGGTGTTTGC 58.593 47.619 4.86 0.00 33.64 3.68
437 438 2.607771 CCGCAAGATCTTTGGGTGTTTG 60.608 50.000 4.86 0.00 43.02 2.93
438 439 1.613437 CCGCAAGATCTTTGGGTGTTT 59.387 47.619 4.86 0.00 43.02 2.83
439 440 1.247567 CCGCAAGATCTTTGGGTGTT 58.752 50.000 4.86 0.00 43.02 3.32
440 441 0.609131 CCCGCAAGATCTTTGGGTGT 60.609 55.000 25.31 0.00 43.02 4.16
441 442 1.937546 GCCCGCAAGATCTTTGGGTG 61.938 60.000 30.18 17.02 37.76 4.61
442 443 1.678970 GCCCGCAAGATCTTTGGGT 60.679 57.895 30.18 1.64 37.76 4.51
443 444 2.764314 CGCCCGCAAGATCTTTGGG 61.764 63.158 27.76 27.76 38.23 4.12
444 445 2.764314 CCGCCCGCAAGATCTTTGG 61.764 63.158 4.86 10.68 43.02 3.28
445 446 2.793946 CCGCCCGCAAGATCTTTG 59.206 61.111 4.86 1.14 43.02 2.77
446 447 3.134127 GCCGCCCGCAAGATCTTT 61.134 61.111 4.86 0.00 43.02 2.52
463 464 3.657350 AACACCCCACCCCCATCG 61.657 66.667 0.00 0.00 0.00 3.84
464 465 2.037208 CAACACCCCACCCCCATC 59.963 66.667 0.00 0.00 0.00 3.51
465 466 2.453497 TCAACACCCCACCCCCAT 60.453 61.111 0.00 0.00 0.00 4.00
466 467 3.503839 GTCAACACCCCACCCCCA 61.504 66.667 0.00 0.00 0.00 4.96
467 468 4.653888 CGTCAACACCCCACCCCC 62.654 72.222 0.00 0.00 0.00 5.40
468 469 3.546714 CTCGTCAACACCCCACCCC 62.547 68.421 0.00 0.00 0.00 4.95
469 470 2.032071 CTCGTCAACACCCCACCC 59.968 66.667 0.00 0.00 0.00 4.61
470 471 1.301479 GACTCGTCAACACCCCACC 60.301 63.158 0.00 0.00 0.00 4.61
471 472 1.663702 CGACTCGTCAACACCCCAC 60.664 63.158 0.00 0.00 0.00 4.61
472 473 2.732016 CGACTCGTCAACACCCCA 59.268 61.111 0.00 0.00 0.00 4.96
473 474 2.737376 GCGACTCGTCAACACCCC 60.737 66.667 0.00 0.00 0.00 4.95
474 475 3.103911 CGCGACTCGTCAACACCC 61.104 66.667 0.00 0.00 0.00 4.61
475 476 2.050714 TCGCGACTCGTCAACACC 60.051 61.111 3.71 0.00 39.67 4.16
476 477 2.362800 GGTCGCGACTCGTCAACAC 61.363 63.158 35.50 14.31 39.67 3.32
477 478 2.050714 GGTCGCGACTCGTCAACA 60.051 61.111 35.50 0.00 39.67 3.33
478 479 3.164011 CGGTCGCGACTCGTCAAC 61.164 66.667 35.50 17.90 39.67 3.18
479 480 4.394078 CCGGTCGCGACTCGTCAA 62.394 66.667 35.50 0.00 39.67 3.18
483 484 3.678717 ATTCACCGGTCGCGACTCG 62.679 63.158 35.50 32.57 40.15 4.18
484 485 2.158959 CATTCACCGGTCGCGACTC 61.159 63.158 35.50 24.63 0.00 3.36
485 486 2.126071 CATTCACCGGTCGCGACT 60.126 61.111 35.50 16.38 0.00 4.18
486 487 3.186047 CCATTCACCGGTCGCGAC 61.186 66.667 30.67 30.67 0.00 5.19
487 488 3.350909 CTCCATTCACCGGTCGCGA 62.351 63.158 2.59 3.71 0.00 5.87
488 489 2.885644 CTCCATTCACCGGTCGCG 60.886 66.667 2.59 0.00 0.00 5.87
489 490 3.195698 GCTCCATTCACCGGTCGC 61.196 66.667 2.59 0.00 0.00 5.19
490 491 2.511600 GGCTCCATTCACCGGTCG 60.512 66.667 2.59 0.00 0.00 4.79
491 492 2.124695 GGGCTCCATTCACCGGTC 60.125 66.667 2.59 0.00 0.00 4.79
492 493 2.610859 AGGGCTCCATTCACCGGT 60.611 61.111 0.00 0.00 0.00 5.28
493 494 2.190578 GAGGGCTCCATTCACCGG 59.809 66.667 0.00 0.00 0.00 5.28
514 515 2.111878 CATCTCCATGGACGGGCC 59.888 66.667 11.44 0.00 37.10 5.80
522 523 1.269988 CGTACTGCCTCCATCTCCATG 60.270 57.143 0.00 0.00 0.00 3.66
523 524 1.043816 CGTACTGCCTCCATCTCCAT 58.956 55.000 0.00 0.00 0.00 3.41
524 525 1.043116 CCGTACTGCCTCCATCTCCA 61.043 60.000 0.00 0.00 0.00 3.86
525 526 0.755698 TCCGTACTGCCTCCATCTCC 60.756 60.000 0.00 0.00 0.00 3.71
526 527 1.000283 CATCCGTACTGCCTCCATCTC 60.000 57.143 0.00 0.00 0.00 2.75
527 528 1.043816 CATCCGTACTGCCTCCATCT 58.956 55.000 0.00 0.00 0.00 2.90
528 529 0.753262 ACATCCGTACTGCCTCCATC 59.247 55.000 0.00 0.00 0.00 3.51
529 530 0.753262 GACATCCGTACTGCCTCCAT 59.247 55.000 0.00 0.00 0.00 3.41
530 531 1.663379 CGACATCCGTACTGCCTCCA 61.663 60.000 0.00 0.00 0.00 3.86
531 532 1.065928 CGACATCCGTACTGCCTCC 59.934 63.158 0.00 0.00 0.00 4.30
532 533 0.454600 TTCGACATCCGTACTGCCTC 59.545 55.000 0.00 0.00 39.75 4.70
533 534 0.172803 GTTCGACATCCGTACTGCCT 59.827 55.000 0.00 0.00 39.75 4.75
534 535 0.804933 GGTTCGACATCCGTACTGCC 60.805 60.000 0.00 0.00 38.40 4.85
535 536 0.804933 GGGTTCGACATCCGTACTGC 60.805 60.000 0.00 0.00 38.40 4.40
536 537 0.179119 GGGGTTCGACATCCGTACTG 60.179 60.000 0.00 0.00 38.40 2.74
537 538 1.325476 GGGGGTTCGACATCCGTACT 61.325 60.000 0.00 0.00 38.40 2.73
538 539 1.142531 GGGGGTTCGACATCCGTAC 59.857 63.158 0.00 0.00 39.75 3.67
539 540 1.305129 TGGGGGTTCGACATCCGTA 60.305 57.895 0.00 0.00 39.75 4.02
540 541 2.605295 TGGGGGTTCGACATCCGT 60.605 61.111 0.00 0.00 39.75 4.69
541 542 2.125269 GTGGGGGTTCGACATCCG 60.125 66.667 0.00 0.00 40.25 4.18
542 543 2.125269 CGTGGGGGTTCGACATCC 60.125 66.667 0.00 0.00 0.00 3.51
543 544 2.818274 GCGTGGGGGTTCGACATC 60.818 66.667 0.00 0.00 0.00 3.06
544 545 3.310860 GAGCGTGGGGGTTCGACAT 62.311 63.158 0.00 0.00 0.00 3.06
545 546 3.998672 GAGCGTGGGGGTTCGACA 61.999 66.667 0.00 0.00 0.00 4.35
546 547 3.236003 AAGAGCGTGGGGGTTCGAC 62.236 63.158 0.00 0.00 0.00 4.20
547 548 2.920912 AAGAGCGTGGGGGTTCGA 60.921 61.111 0.00 0.00 0.00 3.71
548 549 2.434359 GAAGAGCGTGGGGGTTCG 60.434 66.667 0.00 0.00 0.00 3.95
549 550 2.434359 CGAAGAGCGTGGGGGTTC 60.434 66.667 0.00 0.00 34.64 3.62
550 551 4.016706 CCGAAGAGCGTGGGGGTT 62.017 66.667 0.00 0.00 38.67 4.11
569 570 3.851128 GCCTACTCCTCGGCCACC 61.851 72.222 2.24 0.00 40.43 4.61
570 571 3.075005 TGCCTACTCCTCGGCCAC 61.075 66.667 2.24 0.00 45.71 5.01
571 572 2.759973 CTGCCTACTCCTCGGCCA 60.760 66.667 2.24 0.00 45.71 5.36
572 573 3.541713 CCTGCCTACTCCTCGGCC 61.542 72.222 0.00 0.00 45.71 6.13
573 574 4.228567 GCCTGCCTACTCCTCGGC 62.229 72.222 0.00 0.00 46.46 5.54
574 575 3.541713 GGCCTGCCTACTCCTCGG 61.542 72.222 0.00 0.00 0.00 4.63
575 576 3.905678 CGGCCTGCCTACTCCTCG 61.906 72.222 6.60 0.00 0.00 4.63
576 577 2.760385 ACGGCCTGCCTACTCCTC 60.760 66.667 6.60 0.00 0.00 3.71
577 578 3.077556 CACGGCCTGCCTACTCCT 61.078 66.667 6.60 0.00 0.00 3.69
578 579 4.162690 CCACGGCCTGCCTACTCC 62.163 72.222 6.60 0.00 0.00 3.85
579 580 2.435693 ATCCACGGCCTGCCTACTC 61.436 63.158 6.60 0.00 0.00 2.59
580 581 2.365635 ATCCACGGCCTGCCTACT 60.366 61.111 6.60 0.00 0.00 2.57
581 582 2.203070 CATCCACGGCCTGCCTAC 60.203 66.667 6.60 0.00 0.00 3.18
582 583 2.687200 ACATCCACGGCCTGCCTA 60.687 61.111 6.60 0.00 0.00 3.93
583 584 4.101448 GACATCCACGGCCTGCCT 62.101 66.667 6.60 0.00 0.00 4.75
591 592 2.954868 GTAGCCGCGACATCCACG 60.955 66.667 8.23 0.00 0.00 4.94
592 593 0.810031 ATTGTAGCCGCGACATCCAC 60.810 55.000 8.23 0.00 0.00 4.02
593 594 0.809636 CATTGTAGCCGCGACATCCA 60.810 55.000 8.23 0.00 0.00 3.41
594 595 0.529773 TCATTGTAGCCGCGACATCC 60.530 55.000 8.23 0.00 0.00 3.51
595 596 1.193203 CATCATTGTAGCCGCGACATC 59.807 52.381 8.23 0.00 0.00 3.06
596 597 1.220529 CATCATTGTAGCCGCGACAT 58.779 50.000 8.23 0.00 0.00 3.06
597 598 0.809636 CCATCATTGTAGCCGCGACA 60.810 55.000 8.23 0.00 0.00 4.35
598 599 1.934463 CCATCATTGTAGCCGCGAC 59.066 57.895 8.23 0.00 0.00 5.19
599 600 1.887242 GCCATCATTGTAGCCGCGA 60.887 57.895 8.23 0.00 0.00 5.87
600 601 2.109538 CTGCCATCATTGTAGCCGCG 62.110 60.000 0.00 0.00 0.00 6.46
601 602 0.815213 TCTGCCATCATTGTAGCCGC 60.815 55.000 0.00 0.00 0.00 6.53
602 603 1.802960 GATCTGCCATCATTGTAGCCG 59.197 52.381 0.00 0.00 0.00 5.52
603 604 3.137446 AGATCTGCCATCATTGTAGCC 57.863 47.619 0.00 0.00 0.00 3.93
604 605 4.252073 CCTAGATCTGCCATCATTGTAGC 58.748 47.826 5.18 0.00 0.00 3.58
605 606 4.252073 GCCTAGATCTGCCATCATTGTAG 58.748 47.826 5.18 0.00 0.00 2.74
606 607 3.647590 TGCCTAGATCTGCCATCATTGTA 59.352 43.478 5.18 0.00 0.00 2.41
607 608 2.440627 TGCCTAGATCTGCCATCATTGT 59.559 45.455 5.18 0.00 0.00 2.71
608 609 3.075148 CTGCCTAGATCTGCCATCATTG 58.925 50.000 5.18 0.00 0.00 2.82
609 610 2.709934 ACTGCCTAGATCTGCCATCATT 59.290 45.455 5.18 0.00 0.00 2.57
610 611 2.038689 CACTGCCTAGATCTGCCATCAT 59.961 50.000 5.18 0.00 0.00 2.45
611 612 1.415289 CACTGCCTAGATCTGCCATCA 59.585 52.381 5.18 0.00 0.00 3.07
612 613 1.690893 TCACTGCCTAGATCTGCCATC 59.309 52.381 5.18 0.00 0.00 3.51
613 614 1.798626 TCACTGCCTAGATCTGCCAT 58.201 50.000 5.18 0.00 0.00 4.40
614 615 1.415289 CATCACTGCCTAGATCTGCCA 59.585 52.381 5.18 0.00 0.00 4.92
615 616 1.270732 CCATCACTGCCTAGATCTGCC 60.271 57.143 5.18 0.00 0.00 4.85
616 617 1.690893 TCCATCACTGCCTAGATCTGC 59.309 52.381 5.18 1.21 0.00 4.26
617 618 3.865302 GCATCCATCACTGCCTAGATCTG 60.865 52.174 5.18 0.00 32.15 2.90
618 619 2.302445 GCATCCATCACTGCCTAGATCT 59.698 50.000 0.00 0.00 32.15 2.75
619 620 2.697654 GCATCCATCACTGCCTAGATC 58.302 52.381 0.00 0.00 32.15 2.75
620 621 1.001746 CGCATCCATCACTGCCTAGAT 59.998 52.381 0.00 0.00 34.89 1.98
621 622 0.390492 CGCATCCATCACTGCCTAGA 59.610 55.000 0.00 0.00 34.89 2.43
622 623 0.602106 CCGCATCCATCACTGCCTAG 60.602 60.000 0.00 0.00 34.89 3.02
623 624 1.447217 CCGCATCCATCACTGCCTA 59.553 57.895 0.00 0.00 34.89 3.93
624 625 2.191375 CCGCATCCATCACTGCCT 59.809 61.111 0.00 0.00 34.89 4.75
625 626 3.589881 GCCGCATCCATCACTGCC 61.590 66.667 0.00 0.00 34.89 4.85
626 627 3.589881 GGCCGCATCCATCACTGC 61.590 66.667 0.00 0.00 35.02 4.40
627 628 1.750018 TTGGCCGCATCCATCACTG 60.750 57.895 0.00 0.00 35.77 3.66
628 629 1.750399 GTTGGCCGCATCCATCACT 60.750 57.895 0.00 0.00 35.77 3.41
629 630 2.800736 GTTGGCCGCATCCATCAC 59.199 61.111 0.00 0.00 35.77 3.06
630 631 2.607411 ATCGTTGGCCGCATCCATCA 62.607 55.000 0.00 0.00 35.77 3.07
631 632 1.893808 ATCGTTGGCCGCATCCATC 60.894 57.895 0.00 0.00 35.77 3.51
632 633 2.188829 CATCGTTGGCCGCATCCAT 61.189 57.895 0.00 0.00 35.77 3.41
633 634 2.823593 CATCGTTGGCCGCATCCA 60.824 61.111 0.00 0.00 36.19 3.41
634 635 3.585990 CCATCGTTGGCCGCATCC 61.586 66.667 0.00 0.00 35.85 3.51
635 636 3.585990 CCCATCGTTGGCCGCATC 61.586 66.667 7.02 0.00 42.15 3.91
642 643 1.746615 CTGACAGCCCCATCGTTGG 60.747 63.158 5.47 5.47 43.23 3.77
643 644 1.003355 ACTGACAGCCCCATCGTTG 60.003 57.895 1.25 0.00 0.00 4.10
644 645 1.003355 CACTGACAGCCCCATCGTT 60.003 57.895 1.25 0.00 0.00 3.85
645 646 2.665000 CACTGACAGCCCCATCGT 59.335 61.111 1.25 0.00 0.00 3.73
646 647 2.124983 CCACTGACAGCCCCATCG 60.125 66.667 1.25 0.00 0.00 3.84
647 648 1.078143 GTCCACTGACAGCCCCATC 60.078 63.158 1.25 0.00 41.37 3.51
648 649 2.959484 CGTCCACTGACAGCCCCAT 61.959 63.158 1.25 0.00 41.85 4.00
649 650 3.625897 CGTCCACTGACAGCCCCA 61.626 66.667 1.25 0.00 41.85 4.96
652 653 3.649277 ATCGCGTCCACTGACAGCC 62.649 63.158 5.77 0.00 41.85 4.85
653 654 2.125912 ATCGCGTCCACTGACAGC 60.126 61.111 5.77 0.00 41.85 4.40
654 655 1.807165 CCATCGCGTCCACTGACAG 60.807 63.158 5.77 0.00 41.85 3.51
655 656 2.261361 CCATCGCGTCCACTGACA 59.739 61.111 5.77 0.00 41.85 3.58
656 657 3.188786 GCCATCGCGTCCACTGAC 61.189 66.667 5.77 0.00 38.18 3.51
657 658 3.647649 CTGCCATCGCGTCCACTGA 62.648 63.158 5.77 0.00 38.08 3.41
658 659 3.190849 CTGCCATCGCGTCCACTG 61.191 66.667 5.77 0.00 38.08 3.66
659 660 4.457496 CCTGCCATCGCGTCCACT 62.457 66.667 5.77 0.00 38.08 4.00
676 677 3.329542 TTCTGCACATCGCTCCCCC 62.330 63.158 0.00 0.00 43.06 5.40
677 678 1.817099 CTTCTGCACATCGCTCCCC 60.817 63.158 0.00 0.00 43.06 4.81
678 679 2.467826 GCTTCTGCACATCGCTCCC 61.468 63.158 0.00 0.00 43.06 4.30
679 680 1.449246 AGCTTCTGCACATCGCTCC 60.449 57.895 0.00 0.00 43.06 4.70
680 681 1.703438 CCAGCTTCTGCACATCGCTC 61.703 60.000 0.00 0.00 43.06 5.03
681 682 1.744368 CCAGCTTCTGCACATCGCT 60.744 57.895 0.00 0.00 43.06 4.93
682 683 1.300971 TTCCAGCTTCTGCACATCGC 61.301 55.000 0.00 0.00 42.74 4.58
683 684 0.725686 CTTCCAGCTTCTGCACATCG 59.274 55.000 0.00 0.00 42.74 3.84
684 685 1.467734 CACTTCCAGCTTCTGCACATC 59.532 52.381 0.00 0.00 42.74 3.06
685 686 1.531423 CACTTCCAGCTTCTGCACAT 58.469 50.000 0.00 0.00 42.74 3.21
686 687 0.535780 CCACTTCCAGCTTCTGCACA 60.536 55.000 0.00 0.00 42.74 4.57
687 688 1.239968 CCCACTTCCAGCTTCTGCAC 61.240 60.000 0.00 0.00 42.74 4.57
688 689 1.073722 CCCACTTCCAGCTTCTGCA 59.926 57.895 0.00 0.00 42.74 4.41
689 690 2.338785 GCCCACTTCCAGCTTCTGC 61.339 63.158 0.00 0.00 40.05 4.26
690 691 2.037136 CGCCCACTTCCAGCTTCTG 61.037 63.158 0.00 0.00 0.00 3.02
691 692 2.348998 CGCCCACTTCCAGCTTCT 59.651 61.111 0.00 0.00 0.00 2.85
692 693 2.747855 CCGCCCACTTCCAGCTTC 60.748 66.667 0.00 0.00 0.00 3.86
712 713 4.400961 AGCCCTCTTCGCCAGTGC 62.401 66.667 0.00 0.00 0.00 4.40
713 714 2.435586 CAGCCCTCTTCGCCAGTG 60.436 66.667 0.00 0.00 0.00 3.66
714 715 3.710722 CCAGCCCTCTTCGCCAGT 61.711 66.667 0.00 0.00 0.00 4.00
715 716 3.710722 ACCAGCCCTCTTCGCCAG 61.711 66.667 0.00 0.00 0.00 4.85
716 717 4.020617 CACCAGCCCTCTTCGCCA 62.021 66.667 0.00 0.00 0.00 5.69
718 719 2.317149 ATAGCACCAGCCCTCTTCGC 62.317 60.000 0.00 0.00 43.56 4.70
719 720 0.179000 AATAGCACCAGCCCTCTTCG 59.821 55.000 0.00 0.00 43.56 3.79
720 721 2.019984 CAAATAGCACCAGCCCTCTTC 58.980 52.381 0.00 0.00 43.56 2.87
721 722 1.341383 CCAAATAGCACCAGCCCTCTT 60.341 52.381 0.00 0.00 43.56 2.85
722 723 0.257039 CCAAATAGCACCAGCCCTCT 59.743 55.000 0.00 0.00 43.56 3.69
723 724 0.753111 CCCAAATAGCACCAGCCCTC 60.753 60.000 0.00 0.00 43.56 4.30
724 725 1.214305 TCCCAAATAGCACCAGCCCT 61.214 55.000 0.00 0.00 43.56 5.19
725 726 0.753111 CTCCCAAATAGCACCAGCCC 60.753 60.000 0.00 0.00 43.56 5.19
726 727 0.753111 CCTCCCAAATAGCACCAGCC 60.753 60.000 0.00 0.00 43.56 4.85
727 728 0.753111 CCCTCCCAAATAGCACCAGC 60.753 60.000 0.00 0.00 42.56 4.85
728 729 0.918983 TCCCTCCCAAATAGCACCAG 59.081 55.000 0.00 0.00 0.00 4.00
729 730 0.918983 CTCCCTCCCAAATAGCACCA 59.081 55.000 0.00 0.00 0.00 4.17
730 731 1.213296 TCTCCCTCCCAAATAGCACC 58.787 55.000 0.00 0.00 0.00 5.01
731 732 3.217626 CATTCTCCCTCCCAAATAGCAC 58.782 50.000 0.00 0.00 0.00 4.40
732 733 2.175499 CCATTCTCCCTCCCAAATAGCA 59.825 50.000 0.00 0.00 0.00 3.49
733 734 2.175715 ACCATTCTCCCTCCCAAATAGC 59.824 50.000 0.00 0.00 0.00 2.97
734 735 3.718956 AGACCATTCTCCCTCCCAAATAG 59.281 47.826 0.00 0.00 0.00 1.73
735 736 3.459598 CAGACCATTCTCCCTCCCAAATA 59.540 47.826 0.00 0.00 0.00 1.40
736 737 2.243221 CAGACCATTCTCCCTCCCAAAT 59.757 50.000 0.00 0.00 0.00 2.32
737 738 1.635487 CAGACCATTCTCCCTCCCAAA 59.365 52.381 0.00 0.00 0.00 3.28
738 739 1.289160 CAGACCATTCTCCCTCCCAA 58.711 55.000 0.00 0.00 0.00 4.12
739 740 0.119155 ACAGACCATTCTCCCTCCCA 59.881 55.000 0.00 0.00 0.00 4.37
740 741 0.543749 CACAGACCATTCTCCCTCCC 59.456 60.000 0.00 0.00 0.00 4.30
741 742 1.280457 ACACAGACCATTCTCCCTCC 58.720 55.000 0.00 0.00 0.00 4.30
742 743 2.168728 GGTACACAGACCATTCTCCCTC 59.831 54.545 0.00 0.00 39.51 4.30
743 744 2.188817 GGTACACAGACCATTCTCCCT 58.811 52.381 0.00 0.00 39.51 4.20
744 745 1.906574 TGGTACACAGACCATTCTCCC 59.093 52.381 0.00 0.00 44.79 4.30
759 760 2.426023 CCTGCCCGCCTATGGTAC 59.574 66.667 0.00 0.00 0.00 3.34
760 761 3.556306 GCCTGCCCGCCTATGGTA 61.556 66.667 0.00 0.00 0.00 3.25
772 773 3.791586 GAGTCCTCCCAGGCCTGC 61.792 72.222 28.39 12.54 34.61 4.85
773 774 2.284921 TGAGTCCTCCCAGGCCTG 60.285 66.667 26.87 26.87 34.61 4.85
774 775 2.040278 CTGAGTCCTCCCAGGCCT 59.960 66.667 0.00 0.00 34.61 5.19
775 776 2.284995 ACTGAGTCCTCCCAGGCC 60.285 66.667 0.00 0.00 34.61 5.19
776 777 2.664081 CCACTGAGTCCTCCCAGGC 61.664 68.421 0.00 0.00 34.61 4.85
777 778 1.079256 TCCACTGAGTCCTCCCAGG 59.921 63.158 0.00 0.00 36.46 4.45
778 779 0.542938 TGTCCACTGAGTCCTCCCAG 60.543 60.000 0.00 0.00 36.53 4.45
779 780 0.105194 TTGTCCACTGAGTCCTCCCA 60.105 55.000 0.00 0.00 0.00 4.37
780 781 1.056660 TTTGTCCACTGAGTCCTCCC 58.943 55.000 0.00 0.00 0.00 4.30
781 782 2.930826 TTTTGTCCACTGAGTCCTCC 57.069 50.000 0.00 0.00 0.00 4.30
782 783 3.077359 CCATTTTGTCCACTGAGTCCTC 58.923 50.000 0.00 0.00 0.00 3.71
783 784 2.224867 CCCATTTTGTCCACTGAGTCCT 60.225 50.000 0.00 0.00 0.00 3.85
784 785 2.162681 CCCATTTTGTCCACTGAGTCC 58.837 52.381 0.00 0.00 0.00 3.85
785 786 2.814336 GACCCATTTTGTCCACTGAGTC 59.186 50.000 0.00 0.00 0.00 3.36
786 787 2.810400 CGACCCATTTTGTCCACTGAGT 60.810 50.000 0.00 0.00 0.00 3.41
787 788 1.806542 CGACCCATTTTGTCCACTGAG 59.193 52.381 0.00 0.00 0.00 3.35
788 789 1.544537 CCGACCCATTTTGTCCACTGA 60.545 52.381 0.00 0.00 0.00 3.41
789 790 0.881118 CCGACCCATTTTGTCCACTG 59.119 55.000 0.00 0.00 0.00 3.66
790 791 0.893727 GCCGACCCATTTTGTCCACT 60.894 55.000 0.00 0.00 0.00 4.00
791 792 1.584495 GCCGACCCATTTTGTCCAC 59.416 57.895 0.00 0.00 0.00 4.02
792 793 1.969064 CGCCGACCCATTTTGTCCA 60.969 57.895 0.00 0.00 0.00 4.02
793 794 2.874751 CGCCGACCCATTTTGTCC 59.125 61.111 0.00 0.00 0.00 4.02
794 795 2.178273 GCGCCGACCCATTTTGTC 59.822 61.111 0.00 0.00 0.00 3.18
795 796 3.732892 CGCGCCGACCCATTTTGT 61.733 61.111 0.00 0.00 0.00 2.83
796 797 3.262142 AACGCGCCGACCCATTTTG 62.262 57.895 5.73 0.00 0.00 2.44
797 798 2.981350 AACGCGCCGACCCATTTT 60.981 55.556 5.73 0.00 0.00 1.82
798 799 3.732892 CAACGCGCCGACCCATTT 61.733 61.111 5.73 0.00 0.00 2.32
809 810 3.958147 ATGGGTCAGCTCCAACGCG 62.958 63.158 3.53 3.53 37.87 6.01
810 811 1.648467 GAATGGGTCAGCTCCAACGC 61.648 60.000 0.00 0.00 37.87 4.84
811 812 1.361668 CGAATGGGTCAGCTCCAACG 61.362 60.000 0.00 3.20 37.87 4.10
825 826 2.570581 CGCCGACGCAAACGAATG 60.571 61.111 0.00 0.00 43.93 2.67
841 842 0.714994 CAAAAATCATGGCCAACGCG 59.285 50.000 10.96 3.53 35.02 6.01
862 864 6.035758 GCGTCCACTAGTTTAAGTCTAAATGG 59.964 42.308 0.00 10.33 29.86 3.16
864 866 5.803967 CGCGTCCACTAGTTTAAGTCTAAAT 59.196 40.000 0.00 0.00 29.86 1.40
869 871 2.095059 TCCGCGTCCACTAGTTTAAGTC 60.095 50.000 4.92 0.00 0.00 3.01
871 873 2.257034 GTCCGCGTCCACTAGTTTAAG 58.743 52.381 4.92 0.00 0.00 1.85
880 882 1.717194 TTTTATCTGTCCGCGTCCAC 58.283 50.000 4.92 0.00 0.00 4.02
885 887 1.663695 ACCCATTTTATCTGTCCGCG 58.336 50.000 0.00 0.00 0.00 6.46
888 890 2.099098 CGGCAACCCATTTTATCTGTCC 59.901 50.000 0.00 0.00 0.00 4.02
905 907 3.372730 GCCAACTCCAATGCGGCA 61.373 61.111 4.58 4.58 42.50 5.69
1080 1099 2.266055 GTCGTCTTGCTCCCCTGG 59.734 66.667 0.00 0.00 0.00 4.45
1311 1330 2.989253 CCGGGGTTGTTGGCCTTC 60.989 66.667 3.32 0.00 0.00 3.46
1665 1735 4.373116 TCGAAGCAGGGCACGTCC 62.373 66.667 0.00 0.00 34.00 4.79
1776 1846 7.830940 TTTAACACGACACTAGAGTCAAAAA 57.169 32.000 18.62 8.90 38.43 1.94
1777 1847 7.830940 TTTTAACACGACACTAGAGTCAAAA 57.169 32.000 18.62 13.67 38.43 2.44
1778 1848 7.830940 TTTTTAACACGACACTAGAGTCAAA 57.169 32.000 18.62 9.19 38.43 2.69
1799 1869 7.811713 GTCTACAGATAGGTGTAAGACGTTTTT 59.188 37.037 0.00 0.00 32.49 1.94
1800 1870 7.176340 AGTCTACAGATAGGTGTAAGACGTTTT 59.824 37.037 0.00 0.00 36.82 2.43
1801 1871 6.658391 AGTCTACAGATAGGTGTAAGACGTTT 59.342 38.462 0.00 0.00 36.82 3.60
1802 1872 6.093771 CAGTCTACAGATAGGTGTAAGACGTT 59.906 42.308 0.00 0.00 36.82 3.99
1803 1873 5.585445 CAGTCTACAGATAGGTGTAAGACGT 59.415 44.000 0.00 0.00 36.82 4.34
1804 1874 5.585445 ACAGTCTACAGATAGGTGTAAGACG 59.415 44.000 0.00 0.00 36.82 4.18
1805 1875 7.769970 AGTACAGTCTACAGATAGGTGTAAGAC 59.230 40.741 0.00 0.00 33.54 3.01
1806 1876 7.859540 AGTACAGTCTACAGATAGGTGTAAGA 58.140 38.462 0.00 0.00 33.54 2.10
1807 1877 9.781633 ATAGTACAGTCTACAGATAGGTGTAAG 57.218 37.037 0.00 0.00 33.54 2.34
1809 1879 9.557061 CAATAGTACAGTCTACAGATAGGTGTA 57.443 37.037 0.00 0.00 31.87 2.90
1810 1880 8.053963 ACAATAGTACAGTCTACAGATAGGTGT 58.946 37.037 0.00 0.00 33.25 4.16
1811 1881 8.453238 ACAATAGTACAGTCTACAGATAGGTG 57.547 38.462 0.00 0.00 0.00 4.00
1823 1898 5.757320 TCGAGCCTACTACAATAGTACAGTC 59.243 44.000 0.00 0.00 40.14 3.51
1830 1905 5.447954 CGGATCATCGAGCCTACTACAATAG 60.448 48.000 0.00 0.00 35.75 1.73
1864 1939 0.322816 AACTCGTCATGGCAGGCATT 60.323 50.000 6.76 0.00 0.00 3.56
1975 2054 4.458989 TGTTCTTCACTGCAACAAAGAGTT 59.541 37.500 0.00 0.00 42.42 3.01
2006 2085 5.296780 CAGACCCGATTGCAACTTATTACAT 59.703 40.000 0.00 0.00 0.00 2.29
2030 2109 6.349115 CCATCTGCCATGCTAAACATTAGATC 60.349 42.308 1.42 0.00 36.64 2.75
2048 2127 4.082190 CCATGATTCATGAATCCCATCTGC 60.082 45.833 34.65 16.32 43.81 4.26
2050 2129 4.107473 ACCCATGATTCATGAATCCCATCT 59.893 41.667 34.65 18.10 43.81 2.90
2227 2308 1.448985 TATTCAGCCTTTGTCCGCAC 58.551 50.000 0.00 0.00 0.00 5.34
2269 2350 4.118410 GTGTCATTTTTGGACATGCAACA 58.882 39.130 0.00 0.00 46.01 3.33
2270 2351 4.370917 AGTGTCATTTTTGGACATGCAAC 58.629 39.130 0.00 0.00 46.01 4.17
2287 2369 2.802816 ACAAGCATCAACGAAGAGTGTC 59.197 45.455 0.00 0.00 0.00 3.67
2293 2376 4.749245 ACCTTAACAAGCATCAACGAAG 57.251 40.909 0.00 0.00 0.00 3.79
2296 2379 6.359617 CAGTTAAACCTTAACAAGCATCAACG 59.640 38.462 10.91 0.00 0.00 4.10
2299 2382 7.759489 ATCAGTTAAACCTTAACAAGCATCA 57.241 32.000 10.91 0.00 0.00 3.07
2431 2515 7.433708 TTCATGAAATACCAACGCCTATATG 57.566 36.000 5.45 0.00 0.00 1.78
2434 2518 8.635765 ATTATTCATGAAATACCAACGCCTAT 57.364 30.769 13.09 0.00 29.39 2.57
2674 4167 4.803329 ACCATTAGATTGGCTTCATCCT 57.197 40.909 0.00 0.00 40.68 3.24
2689 4182 5.251932 TGGATTCCTGACCTTTGTACCATTA 59.748 40.000 3.95 0.00 0.00 1.90
2730 4223 4.081807 TCTGATGGGCTGAAGATGATATCG 60.082 45.833 0.00 0.00 0.00 2.92
2731 4224 5.417754 TCTGATGGGCTGAAGATGATATC 57.582 43.478 0.00 0.00 0.00 1.63
2795 4289 5.945784 TGCTATTTAGGTTTGCTCATTCTGT 59.054 36.000 0.00 0.00 0.00 3.41
2804 4298 7.946655 AAGAAAAACTGCTATTTAGGTTTGC 57.053 32.000 0.00 0.00 35.39 3.68
2815 4309 9.120538 AGATTCTGTAACAAAGAAAAACTGCTA 57.879 29.630 0.00 0.00 37.22 3.49
2817 4311 7.915397 TGAGATTCTGTAACAAAGAAAAACTGC 59.085 33.333 0.00 0.00 37.22 4.40
2818 4312 9.787532 TTGAGATTCTGTAACAAAGAAAAACTG 57.212 29.630 0.00 0.00 37.22 3.16
3051 4623 6.882656 TCCAGAAGAAATGAGAAGGACTATG 58.117 40.000 0.00 0.00 0.00 2.23
3052 4624 7.502060 TTCCAGAAGAAATGAGAAGGACTAT 57.498 36.000 0.00 0.00 0.00 2.12
3056 4628 6.633325 AGATTCCAGAAGAAATGAGAAGGA 57.367 37.500 0.00 0.00 38.21 3.36
3187 4761 9.502091 AGTAGCTAGTATGACATCTCTAAAGAG 57.498 37.037 0.00 0.25 43.36 2.85
3194 4768 7.921786 ATCTCAGTAGCTAGTATGACATCTC 57.078 40.000 0.00 0.00 0.00 2.75
3200 4774 8.652290 TCTCAAGTATCTCAGTAGCTAGTATGA 58.348 37.037 0.00 3.18 0.00 2.15
3201 4775 8.717821 GTCTCAAGTATCTCAGTAGCTAGTATG 58.282 40.741 0.00 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.