Multiple sequence alignment - TraesCS4A01G424600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G424600 chr4A 100.000 3218 0 0 1 3218 695911859 695908642 0.000000e+00 5943.0
1 TraesCS4A01G424600 chr4A 91.701 735 40 8 1569 2294 625880638 625881360 0.000000e+00 1000.0
2 TraesCS4A01G424600 chr4A 89.655 580 51 5 993 1572 625864555 625865125 0.000000e+00 730.0
3 TraesCS4A01G424600 chr4A 82.410 614 96 10 2049 2655 475386265 475386873 2.840000e-145 525.0
4 TraesCS4A01G424600 chr4A 81.875 320 54 4 2803 3122 475389471 475389786 1.900000e-67 267.0
5 TraesCS4A01G424600 chr4A 76.569 478 104 6 2180 2652 523353173 523353647 4.120000e-64 255.0
6 TraesCS4A01G424600 chr4A 91.489 47 4 0 12 58 484368229 484368183 7.450000e-07 65.8
7 TraesCS4A01G424600 chr5B 89.782 1419 120 11 1282 2691 557135539 557134137 0.000000e+00 1794.0
8 TraesCS4A01G424600 chr5B 90.143 771 58 8 874 1643 557136346 557135593 0.000000e+00 987.0
9 TraesCS4A01G424600 chr5B 88.737 293 33 0 2818 3110 557134174 557133882 3.050000e-95 359.0
10 TraesCS4A01G424600 chr5B 77.519 387 35 27 202 544 557148353 557148731 5.480000e-43 185.0
11 TraesCS4A01G424600 chr5B 78.448 348 29 20 202 511 557150367 557150706 5.480000e-43 185.0
12 TraesCS4A01G424600 chr5B 95.604 91 3 1 425 514 557158217 557158127 9.300000e-31 145.0
13 TraesCS4A01G424600 chr5B 85.938 64 9 0 1197 1260 557135600 557135537 5.760000e-08 69.4
14 TraesCS4A01G424600 chr5D 91.974 1221 76 8 998 2209 543337785 543336578 0.000000e+00 1692.0
15 TraesCS4A01G424600 chr5D 86.749 566 22 14 1 520 543339075 543338517 5.980000e-162 580.0
16 TraesCS4A01G424600 chrUn 82.573 614 95 10 2049 2655 328337088 328337696 6.110000e-147 531.0
17 TraesCS4A01G424600 chrUn 82.381 420 65 7 2049 2462 352303620 352304036 1.100000e-94 357.0
18 TraesCS4A01G424600 chr4D 81.048 649 113 5 2012 2657 484124039 484124680 2.860000e-140 508.0
19 TraesCS4A01G424600 chr4D 90.000 100 9 1 2705 2804 484124700 484124798 9.370000e-26 128.0
20 TraesCS4A01G424600 chr6B 78.571 658 119 17 2009 2657 62118304 62117660 6.420000e-112 414.0
21 TraesCS4A01G424600 chr5A 82.494 417 64 7 2052 2462 473247132 473246719 1.100000e-94 357.0
22 TraesCS4A01G424600 chr5A 81.875 320 54 4 2803 3122 473244148 473243833 1.900000e-67 267.0
23 TraesCS4A01G424600 chr5A 80.480 333 60 5 2791 3122 685966377 685966705 1.920000e-62 250.0
24 TraesCS4A01G424600 chr6A 82.692 312 53 1 2811 3122 573847644 573847954 3.160000e-70 276.0
25 TraesCS4A01G424600 chr6A 81.759 307 55 1 2816 3122 434547043 434547348 4.120000e-64 255.0
26 TraesCS4A01G424600 chr6A 74.349 538 56 43 12 516 289826331 289825843 1.550000e-33 154.0
27 TraesCS4A01G424600 chr2A 76.923 481 103 6 2180 2655 768255562 768255085 1.900000e-67 267.0
28 TraesCS4A01G424600 chr2A 89.362 47 5 0 12 58 608486895 608486849 3.470000e-05 60.2
29 TraesCS4A01G424600 chr1A 81.470 313 55 3 2811 3122 457823103 457822793 1.480000e-63 254.0
30 TraesCS4A01G424600 chr1A 91.489 47 4 0 12 58 556461563 556461517 7.450000e-07 65.8
31 TraesCS4A01G424600 chr2D 80.745 322 56 6 2803 3122 634830250 634830567 2.480000e-61 246.0
32 TraesCS4A01G424600 chr7B 83.529 255 41 1 2868 3122 586051083 586051336 1.490000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G424600 chr4A 695908642 695911859 3217 True 5943.00 5943 100.0000 1 3218 1 chr4A.!!$R2 3217
1 TraesCS4A01G424600 chr4A 625880638 625881360 722 False 1000.00 1000 91.7010 1569 2294 1 chr4A.!!$F3 725
2 TraesCS4A01G424600 chr4A 625864555 625865125 570 False 730.00 730 89.6550 993 1572 1 chr4A.!!$F2 579
3 TraesCS4A01G424600 chr4A 475386265 475389786 3521 False 396.00 525 82.1425 2049 3122 2 chr4A.!!$F4 1073
4 TraesCS4A01G424600 chr5B 557133882 557136346 2464 True 802.35 1794 88.6500 874 3110 4 chr5B.!!$R2 2236
5 TraesCS4A01G424600 chr5D 543336578 543339075 2497 True 1136.00 1692 89.3615 1 2209 2 chr5D.!!$R1 2208
6 TraesCS4A01G424600 chrUn 328337088 328337696 608 False 531.00 531 82.5730 2049 2655 1 chrUn.!!$F1 606
7 TraesCS4A01G424600 chr4D 484124039 484124798 759 False 318.00 508 85.5240 2012 2804 2 chr4D.!!$F1 792
8 TraesCS4A01G424600 chr6B 62117660 62118304 644 True 414.00 414 78.5710 2009 2657 1 chr6B.!!$R1 648
9 TraesCS4A01G424600 chr5A 473243833 473247132 3299 True 312.00 357 82.1845 2052 3122 2 chr5A.!!$R1 1070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 1196 0.036732 TTCAAGTTCCAGCGCTCCAT 59.963 50.0 7.13 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2274 3090 0.252881 ACCTGCTCCTGGAGATCCAA 60.253 55.0 27.53 5.7 46.97 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.716768 GCAATTCCTAGGTAATACTCTGAAC 57.283 40.000 9.08 0.00 0.00 3.18
42 43 6.524734 TCTGAACAGAAATGTGTCACTATGT 58.475 36.000 4.27 0.00 33.91 2.29
45 46 8.083462 TGAACAGAAATGTGTCACTATGTTAC 57.917 34.615 4.27 0.83 30.31 2.50
54 55 5.351189 TGTGTCACTATGTTACACATGATGC 59.649 40.000 12.10 0.00 42.97 3.91
57 58 5.007039 GTCACTATGTTACACATGATGCAGG 59.993 44.000 0.00 0.00 39.53 4.85
67 68 1.337071 CATGATGCAGGCCAGTTGATC 59.663 52.381 5.01 1.22 0.00 2.92
120 121 6.230472 TCATACTGTGCAGAACATACAAACT 58.770 36.000 6.17 0.00 38.39 2.66
121 122 7.382898 TCATACTGTGCAGAACATACAAACTA 58.617 34.615 6.17 0.00 38.39 2.24
122 123 7.875554 TCATACTGTGCAGAACATACAAACTAA 59.124 33.333 6.17 0.00 38.39 2.24
124 125 6.725246 ACTGTGCAGAACATACAAACTAAAC 58.275 36.000 6.17 0.00 38.39 2.01
126 127 7.013274 ACTGTGCAGAACATACAAACTAAACAT 59.987 33.333 6.17 0.00 38.39 2.71
152 179 5.294734 ACTGGCAATTTCCTGAACAAATT 57.705 34.783 7.96 0.00 34.42 1.82
200 227 5.835257 ACACATATAGGCATTTGCATGAAC 58.165 37.500 4.74 0.00 44.36 3.18
211 238 7.013083 AGGCATTTGCATGAACTAGAATTCTAG 59.987 37.037 32.00 32.00 45.78 2.43
282 309 1.106944 TGAGCAGTCAGTCACCGACA 61.107 55.000 0.00 0.00 35.77 4.35
318 345 5.649782 AATTCAAGCACCAACCTAATCTG 57.350 39.130 0.00 0.00 0.00 2.90
319 346 4.365514 TTCAAGCACCAACCTAATCTGA 57.634 40.909 0.00 0.00 0.00 3.27
320 347 4.365514 TCAAGCACCAACCTAATCTGAA 57.634 40.909 0.00 0.00 0.00 3.02
321 348 4.326826 TCAAGCACCAACCTAATCTGAAG 58.673 43.478 0.00 0.00 0.00 3.02
322 349 2.716217 AGCACCAACCTAATCTGAAGC 58.284 47.619 0.00 0.00 0.00 3.86
323 350 2.040278 AGCACCAACCTAATCTGAAGCA 59.960 45.455 0.00 0.00 0.00 3.91
338 365 3.426568 GCAGAAGCGCTGGTCCAC 61.427 66.667 12.58 0.00 45.03 4.02
345 372 2.935955 CGCTGGTCCACGTTCAAC 59.064 61.111 5.89 0.00 0.00 3.18
355 382 1.453015 ACGTTCAACAGCAGGGCAA 60.453 52.632 0.00 0.00 0.00 4.52
396 427 5.755375 GCATCGATTTCTCAGATTAACCTCA 59.245 40.000 0.00 0.00 0.00 3.86
406 437 6.931281 TCTCAGATTAACCTCAACAGTTGAAG 59.069 38.462 16.85 13.32 39.58 3.02
416 447 7.736893 ACCTCAACAGTTGAAGTACTAAAGAT 58.263 34.615 14.83 0.00 39.58 2.40
417 448 7.657761 ACCTCAACAGTTGAAGTACTAAAGATG 59.342 37.037 14.83 0.44 39.58 2.90
419 450 6.426937 TCAACAGTTGAAGTACTAAAGATGCC 59.573 38.462 13.90 0.00 36.59 4.40
421 452 4.330074 CAGTTGAAGTACTAAAGATGCCCG 59.670 45.833 0.00 0.00 0.00 6.13
422 453 3.536956 TGAAGTACTAAAGATGCCCGG 57.463 47.619 0.00 0.00 0.00 5.73
636 733 2.229062 CTGGCAAAGTAGAGACGAGTGA 59.771 50.000 0.00 0.00 0.00 3.41
637 734 2.229062 TGGCAAAGTAGAGACGAGTGAG 59.771 50.000 0.00 0.00 0.00 3.51
638 735 2.416162 GGCAAAGTAGAGACGAGTGAGG 60.416 54.545 0.00 0.00 0.00 3.86
639 736 2.416162 GCAAAGTAGAGACGAGTGAGGG 60.416 54.545 0.00 0.00 0.00 4.30
640 737 2.131776 AAGTAGAGACGAGTGAGGGG 57.868 55.000 0.00 0.00 0.00 4.79
641 738 1.287217 AGTAGAGACGAGTGAGGGGA 58.713 55.000 0.00 0.00 0.00 4.81
642 739 1.210967 AGTAGAGACGAGTGAGGGGAG 59.789 57.143 0.00 0.00 0.00 4.30
643 740 0.547075 TAGAGACGAGTGAGGGGAGG 59.453 60.000 0.00 0.00 0.00 4.30
644 741 1.755008 GAGACGAGTGAGGGGAGGG 60.755 68.421 0.00 0.00 0.00 4.30
645 742 2.212794 GAGACGAGTGAGGGGAGGGA 62.213 65.000 0.00 0.00 0.00 4.20
646 743 1.305046 GACGAGTGAGGGGAGGGAA 60.305 63.158 0.00 0.00 0.00 3.97
647 744 0.688087 GACGAGTGAGGGGAGGGAAT 60.688 60.000 0.00 0.00 0.00 3.01
648 745 0.978146 ACGAGTGAGGGGAGGGAATG 60.978 60.000 0.00 0.00 0.00 2.67
649 746 0.687757 CGAGTGAGGGGAGGGAATGA 60.688 60.000 0.00 0.00 0.00 2.57
650 747 1.584724 GAGTGAGGGGAGGGAATGAA 58.415 55.000 0.00 0.00 0.00 2.57
668 765 0.701147 AAAAGAAGGGGAGGGAGCTG 59.299 55.000 0.00 0.00 0.00 4.24
674 771 4.120755 GGGAGGGAGCTGGGCTTG 62.121 72.222 0.00 0.00 39.88 4.01
675 772 4.120755 GGAGGGAGCTGGGCTTGG 62.121 72.222 0.00 0.00 39.88 3.61
676 773 4.120755 GAGGGAGCTGGGCTTGGG 62.121 72.222 0.00 0.00 39.88 4.12
698 795 2.970205 GGAGGATTGGGCCGAAAAA 58.030 52.632 3.59 0.00 0.00 1.94
709 806 2.077627 GGCCGAAAAACCTCTCTTCTC 58.922 52.381 0.00 0.00 0.00 2.87
710 807 1.727335 GCCGAAAAACCTCTCTTCTCG 59.273 52.381 0.00 0.00 0.00 4.04
712 809 3.391049 CCGAAAAACCTCTCTTCTCGTT 58.609 45.455 0.00 0.00 0.00 3.85
718 815 1.257743 CCTCTCTTCTCGTTGTCCCA 58.742 55.000 0.00 0.00 0.00 4.37
719 816 1.203523 CCTCTCTTCTCGTTGTCCCAG 59.796 57.143 0.00 0.00 0.00 4.45
720 817 1.203523 CTCTCTTCTCGTTGTCCCAGG 59.796 57.143 0.00 0.00 0.00 4.45
721 818 0.390472 CTCTTCTCGTTGTCCCAGGC 60.390 60.000 0.00 0.00 0.00 4.85
722 819 1.376037 CTTCTCGTTGTCCCAGGCC 60.376 63.158 0.00 0.00 0.00 5.19
723 820 1.831652 CTTCTCGTTGTCCCAGGCCT 61.832 60.000 0.00 0.00 0.00 5.19
724 821 2.046892 CTCGTTGTCCCAGGCCTG 60.047 66.667 26.87 26.87 0.00 4.85
755 865 2.027385 GCCCAATTAGCCCAGAAGAAG 58.973 52.381 0.00 0.00 0.00 2.85
756 866 2.027385 CCCAATTAGCCCAGAAGAAGC 58.973 52.381 0.00 0.00 0.00 3.86
758 868 2.621407 CCAATTAGCCCAGAAGAAGCCA 60.621 50.000 0.00 0.00 0.00 4.75
761 871 1.562672 TAGCCCAGAAGAAGCCACCC 61.563 60.000 0.00 0.00 0.00 4.61
762 872 3.170362 CCCAGAAGAAGCCACCCA 58.830 61.111 0.00 0.00 0.00 4.51
764 874 0.040204 CCCAGAAGAAGCCACCCATT 59.960 55.000 0.00 0.00 0.00 3.16
765 875 1.467920 CCAGAAGAAGCCACCCATTC 58.532 55.000 0.00 0.00 0.00 2.67
766 876 1.467920 CAGAAGAAGCCACCCATTCC 58.532 55.000 0.00 0.00 0.00 3.01
767 877 1.075601 AGAAGAAGCCACCCATTCCA 58.924 50.000 0.00 0.00 0.00 3.53
768 878 1.642762 AGAAGAAGCCACCCATTCCAT 59.357 47.619 0.00 0.00 0.00 3.41
769 879 2.043526 AGAAGAAGCCACCCATTCCATT 59.956 45.455 0.00 0.00 0.00 3.16
774 1126 2.181975 AGCCACCCATTCCATTTTCTG 58.818 47.619 0.00 0.00 0.00 3.02
777 1129 3.368739 GCCACCCATTCCATTTTCTGAAG 60.369 47.826 0.00 0.00 0.00 3.02
779 1131 4.159135 CCACCCATTCCATTTTCTGAAGAG 59.841 45.833 0.00 0.00 0.00 2.85
822 1193 0.235926 GTGTTCAAGTTCCAGCGCTC 59.764 55.000 7.13 0.00 0.00 5.03
824 1195 0.884704 GTTCAAGTTCCAGCGCTCCA 60.885 55.000 7.13 0.00 0.00 3.86
825 1196 0.036732 TTCAAGTTCCAGCGCTCCAT 59.963 50.000 7.13 0.00 0.00 3.41
828 1199 2.859273 AAGTTCCAGCGCTCCATCCG 62.859 60.000 7.13 0.00 0.00 4.18
829 1200 3.074369 TTCCAGCGCTCCATCCGA 61.074 61.111 7.13 0.00 0.00 4.55
830 1201 2.655073 TTCCAGCGCTCCATCCGAA 61.655 57.895 7.13 0.00 0.00 4.30
834 1205 1.227674 AGCGCTCCATCCGAAATCC 60.228 57.895 2.64 0.00 0.00 3.01
835 1206 1.523711 GCGCTCCATCCGAAATCCA 60.524 57.895 0.00 0.00 0.00 3.41
838 1209 1.949525 CGCTCCATCCGAAATCCAAAT 59.050 47.619 0.00 0.00 0.00 2.32
839 1210 2.031682 CGCTCCATCCGAAATCCAAATC 60.032 50.000 0.00 0.00 0.00 2.17
840 1211 3.217626 GCTCCATCCGAAATCCAAATCT 58.782 45.455 0.00 0.00 0.00 2.40
841 1212 4.389374 GCTCCATCCGAAATCCAAATCTA 58.611 43.478 0.00 0.00 0.00 1.98
842 1213 4.453819 GCTCCATCCGAAATCCAAATCTAG 59.546 45.833 0.00 0.00 0.00 2.43
843 1214 4.973168 TCCATCCGAAATCCAAATCTAGG 58.027 43.478 0.00 0.00 0.00 3.02
844 1215 4.074970 CCATCCGAAATCCAAATCTAGGG 58.925 47.826 0.00 0.00 0.00 3.53
845 1216 4.446311 CCATCCGAAATCCAAATCTAGGGT 60.446 45.833 0.00 0.00 0.00 4.34
846 1217 4.855298 TCCGAAATCCAAATCTAGGGTT 57.145 40.909 0.00 0.00 0.00 4.11
847 1218 5.961398 TCCGAAATCCAAATCTAGGGTTA 57.039 39.130 0.00 0.00 0.00 2.85
848 1219 5.925509 TCCGAAATCCAAATCTAGGGTTAG 58.074 41.667 0.00 0.00 0.00 2.34
849 1220 5.063880 CCGAAATCCAAATCTAGGGTTAGG 58.936 45.833 0.00 0.00 0.00 2.69
850 1221 5.063880 CGAAATCCAAATCTAGGGTTAGGG 58.936 45.833 0.00 0.00 0.00 3.53
851 1222 5.163237 CGAAATCCAAATCTAGGGTTAGGGA 60.163 44.000 0.00 0.00 0.00 4.20
852 1223 6.465894 CGAAATCCAAATCTAGGGTTAGGGAT 60.466 42.308 0.00 0.00 35.51 3.85
853 1224 5.850046 ATCCAAATCTAGGGTTAGGGATG 57.150 43.478 0.00 0.00 32.91 3.51
854 1225 4.903149 TCCAAATCTAGGGTTAGGGATGA 58.097 43.478 0.00 0.00 0.00 2.92
855 1226 4.907875 TCCAAATCTAGGGTTAGGGATGAG 59.092 45.833 0.00 0.00 0.00 2.90
856 1227 4.042187 CCAAATCTAGGGTTAGGGATGAGG 59.958 50.000 0.00 0.00 0.00 3.86
857 1228 3.569135 ATCTAGGGTTAGGGATGAGGG 57.431 52.381 0.00 0.00 0.00 4.30
879 1257 2.877866 TCGAGTGAGGAATAGGATCCC 58.122 52.381 8.55 0.00 40.59 3.85
890 1268 4.355287 GGAATAGGATCCCAAGGAATTCCT 59.645 45.833 21.89 21.89 42.13 3.36
891 1269 5.551977 GGAATAGGATCCCAAGGAATTCCTA 59.448 44.000 27.29 12.29 43.46 2.94
892 1270 6.045577 GGAATAGGATCCCAAGGAATTCCTAA 59.954 42.308 27.29 13.40 42.93 2.69
929 1307 3.976701 AATCCCAGCTTCCGGTGCG 62.977 63.158 14.38 10.28 37.32 5.34
990 1368 1.448540 CAGCCACCACTAAGCTCCG 60.449 63.158 0.00 0.00 33.70 4.63
1092 1470 1.450312 GGTCAGGATCACCGGCAAG 60.450 63.158 0.00 0.00 41.83 4.01
1093 1471 2.109126 GTCAGGATCACCGGCAAGC 61.109 63.158 0.00 0.00 41.83 4.01
1094 1472 2.046023 CAGGATCACCGGCAAGCA 60.046 61.111 0.00 0.00 41.83 3.91
1095 1473 2.110967 CAGGATCACCGGCAAGCAG 61.111 63.158 0.00 0.00 41.83 4.24
1096 1474 3.512516 GGATCACCGGCAAGCAGC 61.513 66.667 0.00 0.00 44.65 5.25
1263 1645 2.901042 GAAGACCTCGGCCGGAAT 59.099 61.111 27.83 10.86 0.00 3.01
1287 1669 1.376037 CCTCTTCACCTTCCGCCAC 60.376 63.158 0.00 0.00 0.00 5.01
1410 1792 3.231736 AGGTTCGACACGGTGCCT 61.232 61.111 8.30 3.14 0.00 4.75
1608 2401 8.121305 TGAGGTTTGTAACATGCTTTATTCAT 57.879 30.769 0.00 0.00 0.00 2.57
1692 2487 4.021016 GCCTTCACATACGAGAATATCCCT 60.021 45.833 0.00 0.00 0.00 4.20
1710 2505 1.209019 CCTGACTTCTGCTATGGCTGT 59.791 52.381 1.68 0.00 39.59 4.40
1872 2670 2.232208 AGCAAAATTCTGGCCAAGTAGC 59.768 45.455 7.01 4.94 0.00 3.58
1879 2677 5.630415 ATTCTGGCCAAGTAGCAGTATAA 57.370 39.130 7.01 0.00 0.00 0.98
1927 2725 0.391927 TTGGCGGAAAGATGTACCGG 60.392 55.000 0.00 0.00 45.66 5.28
2075 2891 3.277715 CAGAATCAAAGAAGAGGAGGGC 58.722 50.000 0.00 0.00 0.00 5.19
2077 2893 3.199727 AGAATCAAAGAAGAGGAGGGCTC 59.800 47.826 0.00 0.00 0.00 4.70
2105 2921 3.982475 TGAATGTCGATGAGGTGATAGC 58.018 45.455 0.00 0.00 0.00 2.97
2166 2982 9.313118 GGTGAAGAAAAAGAAGAAAATGCTAAA 57.687 29.630 0.00 0.00 0.00 1.85
2211 3027 4.459089 GGACAGCCTGGCGAGTCC 62.459 72.222 34.32 34.32 45.41 3.85
2274 3090 1.674057 CCGGCAGTGAGAGGTCTTT 59.326 57.895 0.00 0.00 0.00 2.52
2301 3117 2.121963 AGGAGCAGGTTGACCCCA 60.122 61.111 0.00 0.00 36.42 4.96
2351 3170 5.278758 CGATAAGAGGAGGATGGAGAAGTTC 60.279 48.000 0.00 0.00 0.00 3.01
2412 3233 5.730296 TTGTGAAGGAAAGAGTAGAGGAG 57.270 43.478 0.00 0.00 0.00 3.69
2421 3242 1.174783 GAGTAGAGGAGTGGCGTTGA 58.825 55.000 0.00 0.00 0.00 3.18
2438 3259 5.179555 GGCGTTGATACAGAAGAAAGAAGTT 59.820 40.000 0.00 0.00 0.00 2.66
2499 3320 8.268850 TGATGCTAAACTAGTGGAAAAAGATC 57.731 34.615 0.00 0.00 0.00 2.75
2512 3333 4.987912 GGAAAAAGATCGTTTCAAATGGCA 59.012 37.500 19.98 0.00 36.82 4.92
2518 3339 5.782047 AGATCGTTTCAAATGGCATTTCAA 58.218 33.333 22.02 13.93 0.00 2.69
2534 3355 5.221581 GCATTTCAAGGGCATTTATGGAGAT 60.222 40.000 0.00 0.00 0.00 2.75
2540 3361 3.464833 AGGGCATTTATGGAGATCCTGTT 59.535 43.478 0.00 0.00 36.82 3.16
2564 3385 6.128138 AGTGCTAAAAGGAGGATAACTTGT 57.872 37.500 0.00 0.00 0.00 3.16
2567 3388 7.606839 AGTGCTAAAAGGAGGATAACTTGTAAC 59.393 37.037 0.00 0.00 0.00 2.50
2601 3422 2.233431 CTCAGTCAGCAGCTTAACCTCT 59.767 50.000 0.00 0.00 0.00 3.69
2629 3450 1.160946 TGCGCTGGCGACTTTTAACA 61.161 50.000 19.31 1.55 44.10 2.41
2666 3488 6.983906 TCATGAGAAGAAGGTATATGCTCA 57.016 37.500 0.00 0.00 35.65 4.26
2667 3489 6.990798 TCATGAGAAGAAGGTATATGCTCAG 58.009 40.000 0.00 0.00 34.80 3.35
2668 3490 6.552725 TCATGAGAAGAAGGTATATGCTCAGT 59.447 38.462 0.00 0.00 34.80 3.41
2669 3491 6.398234 TGAGAAGAAGGTATATGCTCAGTC 57.602 41.667 0.00 0.00 0.00 3.51
2673 3495 7.800092 AGAAGAAGGTATATGCTCAGTCAAAT 58.200 34.615 0.00 0.00 0.00 2.32
2674 3496 7.930865 AGAAGAAGGTATATGCTCAGTCAAATC 59.069 37.037 0.00 0.00 0.00 2.17
2675 3497 7.372260 AGAAGGTATATGCTCAGTCAAATCT 57.628 36.000 0.00 0.00 0.00 2.40
2676 3498 7.215789 AGAAGGTATATGCTCAGTCAAATCTG 58.784 38.462 0.00 0.00 36.85 2.90
2677 3499 5.303971 AGGTATATGCTCAGTCAAATCTGC 58.696 41.667 0.00 0.00 35.63 4.26
2678 3500 5.059161 GGTATATGCTCAGTCAAATCTGCA 58.941 41.667 0.00 0.00 35.63 4.41
2679 3501 5.704515 GGTATATGCTCAGTCAAATCTGCAT 59.295 40.000 0.00 0.00 42.64 3.96
2680 3502 6.875726 GGTATATGCTCAGTCAAATCTGCATA 59.124 38.462 7.72 7.72 44.08 3.14
2681 3503 7.388776 GGTATATGCTCAGTCAAATCTGCATAA 59.611 37.037 9.08 0.00 43.48 1.90
2682 3504 7.812690 ATATGCTCAGTCAAATCTGCATAAA 57.187 32.000 9.08 0.00 43.48 1.40
2683 3505 5.556355 TGCTCAGTCAAATCTGCATAAAG 57.444 39.130 0.00 0.00 35.63 1.85
2684 3506 5.247862 TGCTCAGTCAAATCTGCATAAAGA 58.752 37.500 0.00 0.00 35.63 2.52
2685 3507 5.353400 TGCTCAGTCAAATCTGCATAAAGAG 59.647 40.000 0.00 0.00 35.63 2.85
2686 3508 5.353678 GCTCAGTCAAATCTGCATAAAGAGT 59.646 40.000 0.00 0.00 35.63 3.24
2687 3509 6.128063 GCTCAGTCAAATCTGCATAAAGAGTT 60.128 38.462 0.00 0.00 34.97 3.01
2689 3511 6.712095 TCAGTCAAATCTGCATAAAGAGTTGT 59.288 34.615 11.90 0.00 46.90 3.32
2690 3512 7.229306 TCAGTCAAATCTGCATAAAGAGTTGTT 59.771 33.333 11.90 2.44 46.90 2.83
2691 3513 7.536622 CAGTCAAATCTGCATAAAGAGTTGTTC 59.463 37.037 11.90 8.00 46.90 3.18
2692 3514 7.446625 AGTCAAATCTGCATAAAGAGTTGTTCT 59.553 33.333 11.90 9.54 46.90 3.01
2693 3515 7.536622 GTCAAATCTGCATAAAGAGTTGTTCTG 59.463 37.037 11.90 0.00 46.90 3.02
2694 3516 6.506500 AATCTGCATAAAGAGTTGTTCTGG 57.493 37.500 0.00 0.00 35.91 3.86
2695 3517 4.973168 TCTGCATAAAGAGTTGTTCTGGT 58.027 39.130 0.00 0.00 35.91 4.00
2696 3518 5.376625 TCTGCATAAAGAGTTGTTCTGGTT 58.623 37.500 0.00 0.00 35.91 3.67
2697 3519 5.239306 TCTGCATAAAGAGTTGTTCTGGTTG 59.761 40.000 0.00 0.00 35.91 3.77
2698 3520 4.887071 TGCATAAAGAGTTGTTCTGGTTGT 59.113 37.500 0.00 0.00 35.91 3.32
2699 3521 5.359576 TGCATAAAGAGTTGTTCTGGTTGTT 59.640 36.000 0.00 0.00 35.91 2.83
2700 3522 5.687285 GCATAAAGAGTTGTTCTGGTTGTTG 59.313 40.000 0.00 0.00 35.91 3.33
2701 3523 3.782889 AAGAGTTGTTCTGGTTGTTGC 57.217 42.857 0.00 0.00 35.91 4.17
2702 3524 3.004752 AGAGTTGTTCTGGTTGTTGCT 57.995 42.857 0.00 0.00 33.93 3.91
2703 3525 2.684881 AGAGTTGTTCTGGTTGTTGCTG 59.315 45.455 0.00 0.00 33.93 4.41
2727 3549 6.002062 AGTCAAATGGAAAGTTTTAGAGCG 57.998 37.500 0.00 0.00 0.00 5.03
2768 3590 2.846206 TGAGAGATTTGGGCTATGTGGT 59.154 45.455 0.00 0.00 0.00 4.16
2780 3602 5.074377 TGGGCTATGTGGTGGATAAATACAT 59.926 40.000 0.00 0.00 36.15 2.29
2781 3603 5.415701 GGGCTATGTGGTGGATAAATACATG 59.584 44.000 0.00 0.00 34.22 3.21
2796 3618 6.395426 AAATACATGTGGCACAATCATAGG 57.605 37.500 25.95 10.35 44.16 2.57
2800 3622 1.354031 TGTGGCACAATCATAGGTGGT 59.646 47.619 19.74 0.00 44.16 4.16
2801 3623 1.745087 GTGGCACAATCATAGGTGGTG 59.255 52.381 13.86 0.00 44.16 4.17
2802 3624 1.632920 TGGCACAATCATAGGTGGTGA 59.367 47.619 0.00 0.00 35.58 4.02
2803 3625 2.241941 TGGCACAATCATAGGTGGTGAT 59.758 45.455 0.00 0.00 37.91 3.06
2805 3627 4.080072 TGGCACAATCATAGGTGGTGATTA 60.080 41.667 1.49 0.00 42.68 1.75
2806 3628 5.072741 GGCACAATCATAGGTGGTGATTAT 58.927 41.667 1.49 0.00 42.68 1.28
2807 3629 5.048504 GGCACAATCATAGGTGGTGATTATG 60.049 44.000 3.47 3.47 42.68 1.90
2808 3630 5.048504 GCACAATCATAGGTGGTGATTATGG 60.049 44.000 8.61 1.33 42.68 2.74
2809 3631 6.064060 CACAATCATAGGTGGTGATTATGGT 58.936 40.000 1.49 0.00 42.68 3.55
2810 3632 7.223584 CACAATCATAGGTGGTGATTATGGTA 58.776 38.462 1.49 0.00 42.68 3.25
2811 3633 7.884877 CACAATCATAGGTGGTGATTATGGTAT 59.115 37.037 1.49 0.00 42.68 2.73
2812 3634 9.111519 ACAATCATAGGTGGTGATTATGGTATA 57.888 33.333 1.49 0.00 42.68 1.47
2813 3635 9.958180 CAATCATAGGTGGTGATTATGGTATAA 57.042 33.333 1.49 0.00 42.68 0.98
2814 3636 9.959721 AATCATAGGTGGTGATTATGGTATAAC 57.040 33.333 0.00 0.00 42.73 1.89
2857 6153 9.655769 GTCAAATATGCATATAGAGTTGTTGTG 57.344 33.333 19.39 1.15 0.00 3.33
2870 6166 1.401761 TGTTGTGGATGTTGCAGCTT 58.598 45.000 1.17 0.00 0.00 3.74
2895 6191 7.461749 TGAGAATCCATTTCAGGACTAACTTT 58.538 34.615 0.00 0.00 41.30 2.66
2959 6255 1.228154 GTTGTGGTCGCTTCCCCTT 60.228 57.895 0.00 0.00 0.00 3.95
2962 6258 2.528127 TGGTCGCTTCCCCTTCCA 60.528 61.111 0.00 0.00 0.00 3.53
2988 6284 7.288810 ACAAGATTCTTCACTTTTTATGGCA 57.711 32.000 0.00 0.00 0.00 4.92
3001 6297 3.887621 TTATGGCACCTGTCTACAGAC 57.112 47.619 11.69 0.00 46.59 3.51
3031 6327 0.040157 TGCGCATGAAGCTTCAACAC 60.040 50.000 31.55 21.46 41.13 3.32
3037 6333 2.260844 TGAAGCTTCAACACAGAGGG 57.739 50.000 26.61 0.00 33.55 4.30
3048 6344 1.487976 ACACAGAGGGATGCATGTAGG 59.512 52.381 2.46 0.00 0.00 3.18
3072 6368 0.662619 CGCTGTCCTGTTTGCTTTCA 59.337 50.000 0.00 0.00 0.00 2.69
3086 6382 6.436847 TGTTTGCTTTCATTTGGATGAGGATA 59.563 34.615 0.00 0.00 42.90 2.59
3114 6410 7.360861 CGGACATTGCTTCATTAAGTGTAAGAA 60.361 37.037 0.00 0.00 34.99 2.52
3118 6414 7.817418 TTGCTTCATTAAGTGTAAGAAGGTT 57.183 32.000 0.00 0.00 36.94 3.50
3121 6417 9.344772 TGCTTCATTAAGTGTAAGAAGGTTAAA 57.655 29.630 0.00 0.00 36.94 1.52
3132 6428 9.836076 GTGTAAGAAGGTTAAATTAATGACACC 57.164 33.333 0.00 0.00 0.00 4.16
3133 6429 9.016438 TGTAAGAAGGTTAAATTAATGACACCC 57.984 33.333 6.58 0.00 0.00 4.61
3134 6430 9.239551 GTAAGAAGGTTAAATTAATGACACCCT 57.760 33.333 6.58 0.00 0.00 4.34
3135 6431 7.703058 AGAAGGTTAAATTAATGACACCCTG 57.297 36.000 6.58 0.00 0.00 4.45
3136 6432 7.466804 AGAAGGTTAAATTAATGACACCCTGA 58.533 34.615 6.58 0.00 0.00 3.86
3137 6433 7.947890 AGAAGGTTAAATTAATGACACCCTGAA 59.052 33.333 6.58 0.00 0.00 3.02
3138 6434 8.485578 AAGGTTAAATTAATGACACCCTGAAA 57.514 30.769 6.58 0.00 0.00 2.69
3139 6435 8.485578 AGGTTAAATTAATGACACCCTGAAAA 57.514 30.769 6.58 0.00 0.00 2.29
3140 6436 8.929487 AGGTTAAATTAATGACACCCTGAAAAA 58.071 29.630 6.58 0.00 0.00 1.94
3141 6437 8.984764 GGTTAAATTAATGACACCCTGAAAAAC 58.015 33.333 0.00 0.00 0.00 2.43
3142 6438 9.535878 GTTAAATTAATGACACCCTGAAAAACA 57.464 29.630 0.00 0.00 0.00 2.83
3143 6439 9.757227 TTAAATTAATGACACCCTGAAAAACAG 57.243 29.630 0.00 0.00 45.36 3.16
3152 6448 2.861462 CTGAAAAACAGGAAACGGCA 57.139 45.000 0.00 0.00 42.39 5.69
3153 6449 3.157932 CTGAAAAACAGGAAACGGCAA 57.842 42.857 0.00 0.00 42.39 4.52
3154 6450 3.516615 CTGAAAAACAGGAAACGGCAAA 58.483 40.909 0.00 0.00 42.39 3.68
3155 6451 3.516615 TGAAAAACAGGAAACGGCAAAG 58.483 40.909 0.00 0.00 0.00 2.77
3156 6452 3.193691 TGAAAAACAGGAAACGGCAAAGA 59.806 39.130 0.00 0.00 0.00 2.52
3157 6453 3.878160 AAAACAGGAAACGGCAAAGAA 57.122 38.095 0.00 0.00 0.00 2.52
3158 6454 3.878160 AAACAGGAAACGGCAAAGAAA 57.122 38.095 0.00 0.00 0.00 2.52
3159 6455 3.436700 AACAGGAAACGGCAAAGAAAG 57.563 42.857 0.00 0.00 0.00 2.62
3160 6456 1.067060 ACAGGAAACGGCAAAGAAAGC 59.933 47.619 0.00 0.00 0.00 3.51
3167 6463 3.593834 GGCAAAGAAAGCCCAGTTG 57.406 52.632 0.00 0.00 46.50 3.16
3168 6464 0.033920 GGCAAAGAAAGCCCAGTTGG 59.966 55.000 0.00 0.00 46.50 3.77
3180 6476 2.787473 CCAGTTGGGAGCATGTTAGA 57.213 50.000 0.00 0.00 40.01 2.10
3181 6477 3.287867 CCAGTTGGGAGCATGTTAGAT 57.712 47.619 0.00 0.00 40.01 1.98
3182 6478 3.624777 CCAGTTGGGAGCATGTTAGATT 58.375 45.455 0.00 0.00 40.01 2.40
3183 6479 4.780815 CCAGTTGGGAGCATGTTAGATTA 58.219 43.478 0.00 0.00 40.01 1.75
3184 6480 4.576463 CCAGTTGGGAGCATGTTAGATTAC 59.424 45.833 0.00 0.00 40.01 1.89
3185 6481 5.185454 CAGTTGGGAGCATGTTAGATTACA 58.815 41.667 0.00 0.00 0.00 2.41
3186 6482 5.295292 CAGTTGGGAGCATGTTAGATTACAG 59.705 44.000 0.00 0.00 0.00 2.74
3187 6483 5.045578 AGTTGGGAGCATGTTAGATTACAGT 60.046 40.000 0.00 0.00 0.00 3.55
3188 6484 5.435686 TGGGAGCATGTTAGATTACAGTT 57.564 39.130 0.00 0.00 0.00 3.16
3189 6485 5.428253 TGGGAGCATGTTAGATTACAGTTC 58.572 41.667 0.00 0.00 0.00 3.01
3190 6486 5.189736 TGGGAGCATGTTAGATTACAGTTCT 59.810 40.000 0.00 0.00 0.00 3.01
3191 6487 5.525378 GGGAGCATGTTAGATTACAGTTCTG 59.475 44.000 0.00 0.00 0.00 3.02
3192 6488 6.109359 GGAGCATGTTAGATTACAGTTCTGT 58.891 40.000 10.33 10.33 0.00 3.41
3193 6489 6.256757 GGAGCATGTTAGATTACAGTTCTGTC 59.743 42.308 8.80 0.00 0.00 3.51
3194 6490 6.701340 AGCATGTTAGATTACAGTTCTGTCA 58.299 36.000 8.80 0.00 0.00 3.58
3195 6491 7.334090 AGCATGTTAGATTACAGTTCTGTCAT 58.666 34.615 8.80 4.14 0.00 3.06
3196 6492 7.279536 AGCATGTTAGATTACAGTTCTGTCATG 59.720 37.037 8.80 13.91 37.92 3.07
3197 6493 7.065085 GCATGTTAGATTACAGTTCTGTCATGT 59.935 37.037 19.55 12.68 37.61 3.21
3198 6494 7.889589 TGTTAGATTACAGTTCTGTCATGTG 57.110 36.000 8.80 0.00 0.00 3.21
3199 6495 7.441836 TGTTAGATTACAGTTCTGTCATGTGT 58.558 34.615 8.80 0.00 0.00 3.72
3200 6496 8.581578 TGTTAGATTACAGTTCTGTCATGTGTA 58.418 33.333 8.80 0.00 0.00 2.90
3201 6497 9.077674 GTTAGATTACAGTTCTGTCATGTGTAG 57.922 37.037 8.80 0.00 0.00 2.74
3202 6498 7.468141 AGATTACAGTTCTGTCATGTGTAGA 57.532 36.000 8.80 0.00 0.00 2.59
3203 6499 8.072321 AGATTACAGTTCTGTCATGTGTAGAT 57.928 34.615 8.80 0.00 0.00 1.98
3204 6500 7.978414 AGATTACAGTTCTGTCATGTGTAGATG 59.022 37.037 8.80 0.00 0.00 2.90
3205 6501 5.474578 ACAGTTCTGTCATGTGTAGATGT 57.525 39.130 0.00 0.00 0.00 3.06
3206 6502 5.858381 ACAGTTCTGTCATGTGTAGATGTT 58.142 37.500 0.00 0.00 0.00 2.71
3207 6503 6.291377 ACAGTTCTGTCATGTGTAGATGTTT 58.709 36.000 0.00 0.00 0.00 2.83
3208 6504 6.767902 ACAGTTCTGTCATGTGTAGATGTTTT 59.232 34.615 0.00 0.00 0.00 2.43
3209 6505 7.073883 CAGTTCTGTCATGTGTAGATGTTTTG 58.926 38.462 0.00 0.00 0.00 2.44
3210 6506 6.992123 AGTTCTGTCATGTGTAGATGTTTTGA 59.008 34.615 0.00 0.00 0.00 2.69
3211 6507 7.172190 AGTTCTGTCATGTGTAGATGTTTTGAG 59.828 37.037 0.00 0.00 0.00 3.02
3212 6508 6.524734 TCTGTCATGTGTAGATGTTTTGAGT 58.475 36.000 0.00 0.00 0.00 3.41
3213 6509 6.992123 TCTGTCATGTGTAGATGTTTTGAGTT 59.008 34.615 0.00 0.00 0.00 3.01
3214 6510 6.958255 TGTCATGTGTAGATGTTTTGAGTTG 58.042 36.000 0.00 0.00 0.00 3.16
3215 6511 6.542005 TGTCATGTGTAGATGTTTTGAGTTGT 59.458 34.615 0.00 0.00 0.00 3.32
3216 6512 7.713073 TGTCATGTGTAGATGTTTTGAGTTGTA 59.287 33.333 0.00 0.00 0.00 2.41
3217 6513 8.721478 GTCATGTGTAGATGTTTTGAGTTGTAT 58.279 33.333 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.004628 ACTGGCCTGCATCATGTGTAA 59.995 47.619 9.95 0.00 0.00 2.41
45 46 0.172578 CAACTGGCCTGCATCATGTG 59.827 55.000 9.95 0.00 0.00 3.21
54 55 4.021719 AGTTTCATTTGATCAACTGGCCTG 60.022 41.667 21.56 8.29 0.00 4.85
57 58 5.382618 AGAGTTTCATTTGATCAACTGGC 57.617 39.130 21.56 13.76 28.44 4.85
67 68 8.786937 TTCTCATTCGAAAAGAGTTTCATTTG 57.213 30.769 22.56 5.76 42.90 2.32
120 121 6.945435 TCAGGAAATTGCCAGTTCTATGTTTA 59.055 34.615 4.92 0.00 0.00 2.01
121 122 5.774690 TCAGGAAATTGCCAGTTCTATGTTT 59.225 36.000 4.92 0.00 0.00 2.83
122 123 5.324409 TCAGGAAATTGCCAGTTCTATGTT 58.676 37.500 4.92 0.00 0.00 2.71
124 125 5.183713 TGTTCAGGAAATTGCCAGTTCTATG 59.816 40.000 4.92 0.00 0.00 2.23
126 127 4.724399 TGTTCAGGAAATTGCCAGTTCTA 58.276 39.130 4.92 0.00 0.00 2.10
152 179 2.359214 TGTGGCGATTGCTGTTTGTTTA 59.641 40.909 4.59 0.00 42.25 2.01
211 238 4.328169 GCTGTTTGCTAAGGAATTGATTGC 59.672 41.667 0.00 0.00 38.95 3.56
299 326 4.326826 CTTCAGATTAGGTTGGTGCTTGA 58.673 43.478 0.00 0.00 0.00 3.02
318 345 2.394563 GGACCAGCGCTTCTGCTTC 61.395 63.158 7.50 0.00 44.46 3.86
319 346 2.359230 GGACCAGCGCTTCTGCTT 60.359 61.111 7.50 0.00 44.46 3.91
321 348 3.426568 GTGGACCAGCGCTTCTGC 61.427 66.667 7.50 0.42 41.50 4.26
322 349 3.114616 CGTGGACCAGCGCTTCTG 61.115 66.667 7.50 1.11 42.49 3.02
323 350 3.165160 AACGTGGACCAGCGCTTCT 62.165 57.895 7.50 0.00 0.00 2.85
338 365 1.165907 TCTTGCCCTGCTGTTGAACG 61.166 55.000 0.00 0.00 0.00 3.95
355 382 3.065786 CGATGCCACTATGTTGCAAATCT 59.934 43.478 0.00 0.00 37.71 2.40
364 391 4.100035 TCTGAGAAATCGATGCCACTATGT 59.900 41.667 0.00 0.00 0.00 2.29
370 397 4.816385 GGTTAATCTGAGAAATCGATGCCA 59.184 41.667 0.00 0.00 0.00 4.92
396 427 5.705905 GGGCATCTTTAGTACTTCAACTGTT 59.294 40.000 0.00 0.00 0.00 3.16
406 437 1.070289 CCCTCCGGGCATCTTTAGTAC 59.930 57.143 0.00 0.00 35.35 2.73
419 450 3.148279 ACTTCTAGCGCCCTCCGG 61.148 66.667 2.29 0.00 37.44 5.14
421 452 2.359967 ACCACTTCTAGCGCCCTCC 61.360 63.158 2.29 0.00 0.00 4.30
422 453 1.153549 CACCACTTCTAGCGCCCTC 60.154 63.158 2.29 0.00 0.00 4.30
555 652 3.036429 GCCGCCCAGATCCAACTCT 62.036 63.158 0.00 0.00 0.00 3.24
578 675 3.885521 CGTCCGCGACCTCTACCC 61.886 72.222 8.23 0.00 41.33 3.69
621 718 1.634459 TCCCCTCACTCGTCTCTACTT 59.366 52.381 0.00 0.00 0.00 2.24
624 721 0.547075 CCTCCCCTCACTCGTCTCTA 59.453 60.000 0.00 0.00 0.00 2.43
636 733 2.313041 CCTTCTTTTCATTCCCTCCCCT 59.687 50.000 0.00 0.00 0.00 4.79
637 734 2.624293 CCCTTCTTTTCATTCCCTCCCC 60.624 54.545 0.00 0.00 0.00 4.81
638 735 2.624293 CCCCTTCTTTTCATTCCCTCCC 60.624 54.545 0.00 0.00 0.00 4.30
639 736 2.311841 TCCCCTTCTTTTCATTCCCTCC 59.688 50.000 0.00 0.00 0.00 4.30
640 737 3.625853 CTCCCCTTCTTTTCATTCCCTC 58.374 50.000 0.00 0.00 0.00 4.30
641 738 2.313041 CCTCCCCTTCTTTTCATTCCCT 59.687 50.000 0.00 0.00 0.00 4.20
642 739 2.624293 CCCTCCCCTTCTTTTCATTCCC 60.624 54.545 0.00 0.00 0.00 3.97
643 740 2.311841 TCCCTCCCCTTCTTTTCATTCC 59.688 50.000 0.00 0.00 0.00 3.01
644 741 3.625853 CTCCCTCCCCTTCTTTTCATTC 58.374 50.000 0.00 0.00 0.00 2.67
645 742 2.291865 GCTCCCTCCCCTTCTTTTCATT 60.292 50.000 0.00 0.00 0.00 2.57
646 743 1.286257 GCTCCCTCCCCTTCTTTTCAT 59.714 52.381 0.00 0.00 0.00 2.57
647 744 0.698818 GCTCCCTCCCCTTCTTTTCA 59.301 55.000 0.00 0.00 0.00 2.69
648 745 0.995803 AGCTCCCTCCCCTTCTTTTC 59.004 55.000 0.00 0.00 0.00 2.29
649 746 0.701147 CAGCTCCCTCCCCTTCTTTT 59.299 55.000 0.00 0.00 0.00 2.27
650 747 1.210885 CCAGCTCCCTCCCCTTCTTT 61.211 60.000 0.00 0.00 0.00 2.52
672 769 2.679342 CCCAATCCTCCGAGCCCAA 61.679 63.158 0.00 0.00 0.00 4.12
673 770 3.089874 CCCAATCCTCCGAGCCCA 61.090 66.667 0.00 0.00 0.00 5.36
674 771 4.570874 GCCCAATCCTCCGAGCCC 62.571 72.222 0.00 0.00 0.00 5.19
675 772 4.570874 GGCCCAATCCTCCGAGCC 62.571 72.222 0.00 0.00 0.00 4.70
676 773 4.918201 CGGCCCAATCCTCCGAGC 62.918 72.222 0.00 0.00 45.53 5.03
677 774 3.154473 TCGGCCCAATCCTCCGAG 61.154 66.667 0.00 0.00 46.12 4.63
679 776 0.963355 TTTTTCGGCCCAATCCTCCG 60.963 55.000 0.00 0.00 44.16 4.63
680 777 0.530744 GTTTTTCGGCCCAATCCTCC 59.469 55.000 0.00 0.00 0.00 4.30
684 781 1.472878 GAGAGGTTTTTCGGCCCAATC 59.527 52.381 0.00 0.00 0.00 2.67
685 782 1.075536 AGAGAGGTTTTTCGGCCCAAT 59.924 47.619 0.00 0.00 0.00 3.16
698 795 1.258676 GGGACAACGAGAAGAGAGGT 58.741 55.000 0.00 0.00 0.00 3.85
718 815 4.335647 CTTCACGGTGCCAGGCCT 62.336 66.667 9.64 0.00 0.00 5.19
726 823 0.451783 GCTAATTGGGCTTCACGGTG 59.548 55.000 0.56 0.56 0.00 4.94
727 824 0.679960 GGCTAATTGGGCTTCACGGT 60.680 55.000 8.20 0.00 0.00 4.83
728 825 1.384222 GGGCTAATTGGGCTTCACGG 61.384 60.000 14.98 0.00 0.00 4.94
729 826 0.679640 TGGGCTAATTGGGCTTCACG 60.680 55.000 14.98 0.00 0.00 4.35
730 827 1.106285 CTGGGCTAATTGGGCTTCAC 58.894 55.000 14.98 0.00 0.00 3.18
755 865 2.178580 TCAGAAAATGGAATGGGTGGC 58.821 47.619 0.00 0.00 0.00 5.01
756 866 4.088634 TCTTCAGAAAATGGAATGGGTGG 58.911 43.478 0.00 0.00 0.00 4.61
758 868 5.261040 TCTCTTCAGAAAATGGAATGGGT 57.739 39.130 0.00 0.00 0.00 4.51
787 1139 0.324943 ACACGGGTTGAGAGGGAATG 59.675 55.000 0.00 0.00 0.00 2.67
789 1141 0.395312 GAACACGGGTTGAGAGGGAA 59.605 55.000 8.36 0.00 37.36 3.97
790 1142 0.761323 TGAACACGGGTTGAGAGGGA 60.761 55.000 8.36 0.00 37.36 4.20
792 1144 1.202651 ACTTGAACACGGGTTGAGAGG 60.203 52.381 8.36 0.00 37.36 3.69
822 1193 4.074970 CCCTAGATTTGGATTTCGGATGG 58.925 47.826 0.00 0.00 0.00 3.51
824 1195 5.388599 AACCCTAGATTTGGATTTCGGAT 57.611 39.130 0.00 0.00 0.00 4.18
825 1196 4.855298 AACCCTAGATTTGGATTTCGGA 57.145 40.909 0.00 0.00 0.00 4.55
828 1199 6.262056 TCCCTAACCCTAGATTTGGATTTC 57.738 41.667 8.18 0.00 0.00 2.17
829 1200 6.392842 TCATCCCTAACCCTAGATTTGGATTT 59.607 38.462 8.18 0.00 0.00 2.17
830 1201 5.917087 TCATCCCTAACCCTAGATTTGGATT 59.083 40.000 8.18 0.00 0.00 3.01
834 1205 4.042187 CCCTCATCCCTAACCCTAGATTTG 59.958 50.000 0.00 0.00 0.00 2.32
835 1206 4.077387 TCCCTCATCCCTAACCCTAGATTT 60.077 45.833 0.00 0.00 0.00 2.17
838 1209 2.521286 TCCCTCATCCCTAACCCTAGA 58.479 52.381 0.00 0.00 0.00 2.43
839 1210 3.445987 GATCCCTCATCCCTAACCCTAG 58.554 54.545 0.00 0.00 0.00 3.02
840 1211 2.225293 CGATCCCTCATCCCTAACCCTA 60.225 54.545 0.00 0.00 0.00 3.53
841 1212 1.483307 CGATCCCTCATCCCTAACCCT 60.483 57.143 0.00 0.00 0.00 4.34
842 1213 0.977395 CGATCCCTCATCCCTAACCC 59.023 60.000 0.00 0.00 0.00 4.11
843 1214 1.896465 CTCGATCCCTCATCCCTAACC 59.104 57.143 0.00 0.00 0.00 2.85
844 1215 2.297597 CACTCGATCCCTCATCCCTAAC 59.702 54.545 0.00 0.00 0.00 2.34
845 1216 2.177016 TCACTCGATCCCTCATCCCTAA 59.823 50.000 0.00 0.00 0.00 2.69
846 1217 1.780919 TCACTCGATCCCTCATCCCTA 59.219 52.381 0.00 0.00 0.00 3.53
847 1218 0.558220 TCACTCGATCCCTCATCCCT 59.442 55.000 0.00 0.00 0.00 4.20
848 1219 0.965439 CTCACTCGATCCCTCATCCC 59.035 60.000 0.00 0.00 0.00 3.85
849 1220 0.965439 CCTCACTCGATCCCTCATCC 59.035 60.000 0.00 0.00 0.00 3.51
850 1221 1.988293 TCCTCACTCGATCCCTCATC 58.012 55.000 0.00 0.00 0.00 2.92
851 1222 2.461300 TTCCTCACTCGATCCCTCAT 57.539 50.000 0.00 0.00 0.00 2.90
852 1223 2.461300 ATTCCTCACTCGATCCCTCA 57.539 50.000 0.00 0.00 0.00 3.86
853 1224 2.823154 CCTATTCCTCACTCGATCCCTC 59.177 54.545 0.00 0.00 0.00 4.30
854 1225 2.447429 TCCTATTCCTCACTCGATCCCT 59.553 50.000 0.00 0.00 0.00 4.20
855 1226 2.877866 TCCTATTCCTCACTCGATCCC 58.122 52.381 0.00 0.00 0.00 3.85
856 1227 3.445805 GGATCCTATTCCTCACTCGATCC 59.554 52.174 3.84 0.00 38.03 3.36
857 1228 3.445805 GGGATCCTATTCCTCACTCGATC 59.554 52.174 12.58 0.00 35.97 3.69
879 1257 5.045578 TGGGTTCTCTCTTAGGAATTCCTTG 60.046 44.000 31.45 22.86 46.09 3.61
890 1268 2.409064 TGGTGGTGGGTTCTCTCTTA 57.591 50.000 0.00 0.00 0.00 2.10
891 1269 1.518367 TTGGTGGTGGGTTCTCTCTT 58.482 50.000 0.00 0.00 0.00 2.85
892 1270 1.518367 TTTGGTGGTGGGTTCTCTCT 58.482 50.000 0.00 0.00 0.00 3.10
977 1355 3.771160 CGGCCGGAGCTTAGTGGT 61.771 66.667 20.10 0.00 39.73 4.16
1139 1520 2.825836 CCACCGCCTGGATCTTGC 60.826 66.667 0.00 0.00 43.95 4.01
1140 1521 2.124570 CCCACCGCCTGGATCTTG 60.125 66.667 0.00 0.00 43.95 3.02
1141 1522 4.115199 GCCCACCGCCTGGATCTT 62.115 66.667 0.00 0.00 43.95 2.40
1194 1575 2.603473 CCCAGAGACGTCCCCACA 60.603 66.667 13.01 0.00 0.00 4.17
1263 1645 0.974383 GGAAGGTGAAGAGGAACCGA 59.026 55.000 0.00 0.00 41.61 4.69
1287 1669 1.153745 CTTCTCCTTGTCGGCCTCG 60.154 63.158 0.00 0.00 37.82 4.63
1338 1720 2.550175 TCCTCCATCACCAACAGATGA 58.450 47.619 4.84 0.00 44.34 2.92
1410 1792 2.118732 TACGCCCTGACCCAGACA 59.881 61.111 0.00 0.00 32.44 3.41
1608 2401 5.173664 GCCATCATATCGTCTTCATCATCA 58.826 41.667 0.00 0.00 0.00 3.07
1620 2413 1.300971 CCCCAAGCGCCATCATATCG 61.301 60.000 2.29 0.00 0.00 2.92
1628 2421 4.776322 CATCGTCCCCAAGCGCCA 62.776 66.667 2.29 0.00 0.00 5.69
1692 2487 1.065926 CCACAGCCATAGCAGAAGTCA 60.066 52.381 0.00 0.00 43.56 3.41
1710 2505 3.523157 TCTCTGTATGCCCAAGAATTCCA 59.477 43.478 0.65 0.00 0.00 3.53
1872 2670 5.753921 GCTACCCTGTTTACTGCTTATACTG 59.246 44.000 0.00 0.00 0.00 2.74
1879 2677 1.263356 TCGCTACCCTGTTTACTGCT 58.737 50.000 0.00 0.00 0.00 4.24
1927 2725 0.460987 CCTTGATCGTCCTCTGTGCC 60.461 60.000 0.00 0.00 0.00 5.01
2010 2808 3.944650 GCTGGATTCCTTTCTTCCTCTTC 59.055 47.826 3.95 0.00 0.00 2.87
2075 2891 8.031277 TCACCTCATCGACATTCATTATATGAG 58.969 37.037 0.00 0.00 40.94 2.90
2077 2893 8.713737 ATCACCTCATCGACATTCATTATATG 57.286 34.615 0.00 0.00 0.00 1.78
2105 2921 0.716108 CTTCGCCTTGTTCGCTACTG 59.284 55.000 0.00 0.00 0.00 2.74
2211 3027 6.093219 CAGTTCCACACTAGGATTCTCATTTG 59.907 42.308 0.00 0.00 37.56 2.32
2274 3090 0.252881 ACCTGCTCCTGGAGATCCAA 60.253 55.000 27.53 5.70 46.97 3.53
2301 3117 7.684529 AGTTCAGTTTCAGATAAGAGGATGTT 58.315 34.615 0.00 0.00 0.00 2.71
2351 3170 2.579873 CCCATTCCTAGCATCCACTTG 58.420 52.381 0.00 0.00 0.00 3.16
2412 3233 3.994392 TCTTTCTTCTGTATCAACGCCAC 59.006 43.478 0.00 0.00 0.00 5.01
2421 3242 7.680730 TCCAGCTTAACTTCTTTCTTCTGTAT 58.319 34.615 0.00 0.00 0.00 2.29
2438 3259 5.304614 AGAGTAGTTGTGAAGTTCCAGCTTA 59.695 40.000 13.16 2.11 0.00 3.09
2450 3271 7.614192 TCAATGTGATACCTAGAGTAGTTGTGA 59.386 37.037 0.00 0.00 33.42 3.58
2499 3320 3.432933 CCCTTGAAATGCCATTTGAAACG 59.567 43.478 7.53 0.00 31.47 3.60
2512 3333 5.541484 GGATCTCCATAAATGCCCTTGAAAT 59.459 40.000 0.00 0.00 35.64 2.17
2518 3339 3.059097 ACAGGATCTCCATAAATGCCCT 58.941 45.455 0.00 0.00 38.89 5.19
2534 3355 4.164981 TCCTCCTTTTAGCACTAACAGGA 58.835 43.478 19.35 19.35 44.98 3.86
2540 3361 7.253905 ACAAGTTATCCTCCTTTTAGCACTA 57.746 36.000 0.00 0.00 0.00 2.74
2554 3375 8.129211 GGATGTGCAATAAGTTACAAGTTATCC 58.871 37.037 0.00 0.00 34.34 2.59
2564 3385 6.048732 TGACTGAGGATGTGCAATAAGTTA 57.951 37.500 0.00 0.00 0.00 2.24
2567 3388 3.311871 GCTGACTGAGGATGTGCAATAAG 59.688 47.826 0.00 0.00 0.00 1.73
2601 3422 3.364441 GCCAGCGCACAACCATGA 61.364 61.111 11.47 0.00 34.03 3.07
2662 3484 5.353678 ACTCTTTATGCAGATTTGACTGAGC 59.646 40.000 0.00 0.00 39.94 4.26
2663 3485 6.981762 ACTCTTTATGCAGATTTGACTGAG 57.018 37.500 0.00 0.00 39.94 3.35
2664 3486 6.712095 ACAACTCTTTATGCAGATTTGACTGA 59.288 34.615 9.72 0.00 36.16 3.41
2666 3488 7.446625 AGAACAACTCTTTATGCAGATTTGACT 59.553 33.333 9.72 6.60 36.16 3.41
2667 3489 7.536622 CAGAACAACTCTTTATGCAGATTTGAC 59.463 37.037 9.72 5.03 36.16 3.18
2668 3490 7.308770 CCAGAACAACTCTTTATGCAGATTTGA 60.309 37.037 9.72 0.00 36.16 2.69
2669 3491 6.805271 CCAGAACAACTCTTTATGCAGATTTG 59.195 38.462 0.00 0.00 38.68 2.32
2673 3495 4.973168 ACCAGAACAACTCTTTATGCAGA 58.027 39.130 0.00 0.00 29.07 4.26
2674 3496 5.009010 ACAACCAGAACAACTCTTTATGCAG 59.991 40.000 0.00 0.00 29.07 4.41
2675 3497 4.887071 ACAACCAGAACAACTCTTTATGCA 59.113 37.500 0.00 0.00 29.07 3.96
2676 3498 5.438761 ACAACCAGAACAACTCTTTATGC 57.561 39.130 0.00 0.00 29.07 3.14
2677 3499 5.687285 GCAACAACCAGAACAACTCTTTATG 59.313 40.000 0.00 0.00 29.07 1.90
2678 3500 5.594317 AGCAACAACCAGAACAACTCTTTAT 59.406 36.000 0.00 0.00 29.07 1.40
2679 3501 4.947388 AGCAACAACCAGAACAACTCTTTA 59.053 37.500 0.00 0.00 29.07 1.85
2680 3502 3.763897 AGCAACAACCAGAACAACTCTTT 59.236 39.130 0.00 0.00 29.07 2.52
2681 3503 3.129287 CAGCAACAACCAGAACAACTCTT 59.871 43.478 0.00 0.00 29.07 2.85
2682 3504 2.684881 CAGCAACAACCAGAACAACTCT 59.315 45.455 0.00 0.00 33.23 3.24
2683 3505 2.682856 TCAGCAACAACCAGAACAACTC 59.317 45.455 0.00 0.00 0.00 3.01
2684 3506 2.684881 CTCAGCAACAACCAGAACAACT 59.315 45.455 0.00 0.00 0.00 3.16
2685 3507 2.423538 ACTCAGCAACAACCAGAACAAC 59.576 45.455 0.00 0.00 0.00 3.32
2686 3508 2.682856 GACTCAGCAACAACCAGAACAA 59.317 45.455 0.00 0.00 0.00 2.83
2687 3509 2.288666 GACTCAGCAACAACCAGAACA 58.711 47.619 0.00 0.00 0.00 3.18
2688 3510 2.288666 TGACTCAGCAACAACCAGAAC 58.711 47.619 0.00 0.00 0.00 3.01
2689 3511 2.708216 TGACTCAGCAACAACCAGAA 57.292 45.000 0.00 0.00 0.00 3.02
2690 3512 2.708216 TTGACTCAGCAACAACCAGA 57.292 45.000 0.00 0.00 0.00 3.86
2691 3513 3.551454 CCATTTGACTCAGCAACAACCAG 60.551 47.826 0.00 0.00 0.00 4.00
2692 3514 2.361757 CCATTTGACTCAGCAACAACCA 59.638 45.455 0.00 0.00 0.00 3.67
2693 3515 2.622942 TCCATTTGACTCAGCAACAACC 59.377 45.455 0.00 0.00 0.00 3.77
2694 3516 3.988379 TCCATTTGACTCAGCAACAAC 57.012 42.857 0.00 0.00 0.00 3.32
2695 3517 4.402155 ACTTTCCATTTGACTCAGCAACAA 59.598 37.500 0.00 0.00 0.00 2.83
2696 3518 3.953612 ACTTTCCATTTGACTCAGCAACA 59.046 39.130 0.00 0.00 0.00 3.33
2697 3519 4.574599 ACTTTCCATTTGACTCAGCAAC 57.425 40.909 0.00 0.00 0.00 4.17
2698 3520 5.596836 AAACTTTCCATTTGACTCAGCAA 57.403 34.783 0.00 0.00 0.00 3.91
2699 3521 5.596836 AAAACTTTCCATTTGACTCAGCA 57.403 34.783 0.00 0.00 0.00 4.41
2700 3522 6.970484 TCTAAAACTTTCCATTTGACTCAGC 58.030 36.000 0.00 0.00 0.00 4.26
2701 3523 7.080724 GCTCTAAAACTTTCCATTTGACTCAG 58.919 38.462 0.00 0.00 0.00 3.35
2702 3524 6.293407 CGCTCTAAAACTTTCCATTTGACTCA 60.293 38.462 0.00 0.00 0.00 3.41
2703 3525 6.080406 CGCTCTAAAACTTTCCATTTGACTC 58.920 40.000 0.00 0.00 0.00 3.36
2727 3549 1.118838 ATCCACAGTCTGCTAGAGCC 58.881 55.000 0.00 0.00 41.18 4.70
2768 3590 5.890419 TGATTGTGCCACATGTATTTATCCA 59.110 36.000 0.00 0.00 0.00 3.41
2780 3602 1.354031 ACCACCTATGATTGTGCCACA 59.646 47.619 0.00 0.00 0.00 4.17
2781 3603 1.745087 CACCACCTATGATTGTGCCAC 59.255 52.381 0.00 0.00 0.00 5.01
2796 3618 8.288689 ACCTTTTGTTATACCATAATCACCAC 57.711 34.615 0.00 0.00 0.00 4.16
2838 6134 6.359804 ACATCCACAACAACTCTATATGCAT 58.640 36.000 3.79 3.79 0.00 3.96
2857 6153 2.098770 GGATTCTCAAGCTGCAACATCC 59.901 50.000 1.02 0.26 0.00 3.51
2870 6166 6.627087 AGTTAGTCCTGAAATGGATTCTCA 57.373 37.500 0.00 0.00 38.92 3.27
2895 6191 6.070596 TGCTTCTTCATCTGTATTTGAGGAGA 60.071 38.462 0.00 0.00 30.82 3.71
2959 6255 9.748708 CATAAAAAGTGAAGAATCTTGTTTGGA 57.251 29.630 0.00 0.00 0.00 3.53
2962 6258 8.203485 TGCCATAAAAAGTGAAGAATCTTGTTT 58.797 29.630 0.00 0.00 0.00 2.83
3001 6297 1.093972 TCATGCGCATGGGTAAACTG 58.906 50.000 41.21 21.10 39.24 3.16
3031 6327 0.471191 TGCCTACATGCATCCCTCTG 59.529 55.000 0.00 0.00 36.04 3.35
3037 6333 0.531532 AGCGAGTGCCTACATGCATC 60.532 55.000 0.00 0.00 44.30 3.91
3048 6344 1.571460 CAAACAGGACAGCGAGTGC 59.429 57.895 0.00 0.00 43.24 4.40
3072 6368 2.705658 TGTCCGCTATCCTCATCCAAAT 59.294 45.455 0.00 0.00 0.00 2.32
3086 6382 3.127548 CACTTAATGAAGCAATGTCCGCT 59.872 43.478 0.00 0.00 42.98 5.52
3114 6410 8.485578 TTTTCAGGGTGTCATTAATTTAACCT 57.514 30.769 9.11 3.14 0.00 3.50
3133 6429 2.861462 TGCCGTTTCCTGTTTTTCAG 57.139 45.000 0.00 0.00 43.27 3.02
3134 6430 3.193691 TCTTTGCCGTTTCCTGTTTTTCA 59.806 39.130 0.00 0.00 0.00 2.69
3135 6431 3.776340 TCTTTGCCGTTTCCTGTTTTTC 58.224 40.909 0.00 0.00 0.00 2.29
3136 6432 3.878160 TCTTTGCCGTTTCCTGTTTTT 57.122 38.095 0.00 0.00 0.00 1.94
3137 6433 3.878160 TTCTTTGCCGTTTCCTGTTTT 57.122 38.095 0.00 0.00 0.00 2.43
3138 6434 3.780902 CTTTCTTTGCCGTTTCCTGTTT 58.219 40.909 0.00 0.00 0.00 2.83
3139 6435 2.481276 GCTTTCTTTGCCGTTTCCTGTT 60.481 45.455 0.00 0.00 0.00 3.16
3140 6436 1.067060 GCTTTCTTTGCCGTTTCCTGT 59.933 47.619 0.00 0.00 0.00 4.00
3141 6437 1.602920 GGCTTTCTTTGCCGTTTCCTG 60.603 52.381 0.00 0.00 41.03 3.86
3142 6438 0.673985 GGCTTTCTTTGCCGTTTCCT 59.326 50.000 0.00 0.00 41.03 3.36
3143 6439 3.195041 GGCTTTCTTTGCCGTTTCC 57.805 52.632 0.00 0.00 41.03 3.13
3150 6446 3.593834 CCAACTGGGCTTTCTTTGC 57.406 52.632 0.00 0.00 0.00 3.68
3161 6457 2.787473 TCTAACATGCTCCCAACTGG 57.213 50.000 0.00 0.00 0.00 4.00
3162 6458 5.185454 TGTAATCTAACATGCTCCCAACTG 58.815 41.667 0.00 0.00 0.00 3.16
3163 6459 5.045578 ACTGTAATCTAACATGCTCCCAACT 60.046 40.000 0.00 0.00 0.00 3.16
3164 6460 5.186198 ACTGTAATCTAACATGCTCCCAAC 58.814 41.667 0.00 0.00 0.00 3.77
3165 6461 5.435686 ACTGTAATCTAACATGCTCCCAA 57.564 39.130 0.00 0.00 0.00 4.12
3166 6462 5.189736 AGAACTGTAATCTAACATGCTCCCA 59.810 40.000 0.00 0.00 0.00 4.37
3167 6463 5.525378 CAGAACTGTAATCTAACATGCTCCC 59.475 44.000 0.00 0.00 0.00 4.30
3168 6464 6.109359 ACAGAACTGTAATCTAACATGCTCC 58.891 40.000 5.62 0.00 42.90 4.70
3169 6465 6.813649 TGACAGAACTGTAATCTAACATGCTC 59.186 38.462 7.46 0.00 45.05 4.26
3170 6466 6.701340 TGACAGAACTGTAATCTAACATGCT 58.299 36.000 7.46 0.00 45.05 3.79
3171 6467 6.968131 TGACAGAACTGTAATCTAACATGC 57.032 37.500 7.46 0.00 45.05 4.06
3172 6468 8.385858 CACATGACAGAACTGTAATCTAACATG 58.614 37.037 19.30 19.30 45.05 3.21
3173 6469 8.097038 ACACATGACAGAACTGTAATCTAACAT 58.903 33.333 7.46 2.96 45.05 2.71
3174 6470 7.441836 ACACATGACAGAACTGTAATCTAACA 58.558 34.615 7.46 0.75 45.05 2.41
3175 6471 7.891183 ACACATGACAGAACTGTAATCTAAC 57.109 36.000 7.46 0.00 45.05 2.34
3176 6472 9.020731 TCTACACATGACAGAACTGTAATCTAA 57.979 33.333 7.46 0.00 45.05 2.10
3177 6473 8.575649 TCTACACATGACAGAACTGTAATCTA 57.424 34.615 7.46 0.00 45.05 1.98
3178 6474 7.468141 TCTACACATGACAGAACTGTAATCT 57.532 36.000 7.46 0.00 45.05 2.40
3179 6475 7.761704 ACATCTACACATGACAGAACTGTAATC 59.238 37.037 7.46 0.00 45.05 1.75
3180 6476 7.615403 ACATCTACACATGACAGAACTGTAAT 58.385 34.615 7.46 3.27 45.05 1.89
3181 6477 6.993079 ACATCTACACATGACAGAACTGTAA 58.007 36.000 7.46 0.72 45.05 2.41
3182 6478 6.590234 ACATCTACACATGACAGAACTGTA 57.410 37.500 7.46 0.00 45.05 2.74
3184 6480 6.791887 AAACATCTACACATGACAGAACTG 57.208 37.500 0.00 0.00 0.00 3.16
3185 6481 6.992123 TCAAAACATCTACACATGACAGAACT 59.008 34.615 0.00 0.00 0.00 3.01
3186 6482 7.041780 ACTCAAAACATCTACACATGACAGAAC 60.042 37.037 0.00 0.00 0.00 3.01
3187 6483 6.992123 ACTCAAAACATCTACACATGACAGAA 59.008 34.615 0.00 0.00 0.00 3.02
3188 6484 6.524734 ACTCAAAACATCTACACATGACAGA 58.475 36.000 0.00 0.00 0.00 3.41
3189 6485 6.791887 ACTCAAAACATCTACACATGACAG 57.208 37.500 0.00 0.00 0.00 3.51
3190 6486 6.542005 ACAACTCAAAACATCTACACATGACA 59.458 34.615 0.00 0.00 0.00 3.58
3191 6487 6.959361 ACAACTCAAAACATCTACACATGAC 58.041 36.000 0.00 0.00 0.00 3.06
3192 6488 8.846943 ATACAACTCAAAACATCTACACATGA 57.153 30.769 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.