>input_sequence_57265
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-----------------ATGGGGGCCTCGAGGGCAGCACCTCTGCGGGGGAAGCTCGGCAGCCTGCAGCTCTCCGAGGCC
GAGAAGAAGGGGGTCAGGATCACCGGCAAGCAGCAGCAGCAGCAG---CAGCCATGCCCCTCCCCGCAGGCGAGCGGCGG
CAAGATCCAGGCGGTGGGCAAGCTGCTCTCGGAGAAGCCGGCCATAGCGCAGCATGTGGGGACGTCTCTGGGGGCGGTCT
GGAGCCCCTCCTTCG-GGGTCAAATGCGAAGACCTCGGCCGGAATCGGTTCCTCTTCACCTTCCGCCACGAGGCCGACAA
GGAGAAGGCTCTGGATGCCGGGCCCTGGAGCTTCGCCGGTCATCTGTTGGTGATGGAGGATTTTGCGCCCGGAGCCACCA
CCGTGGACGAGCTCAGGTTCGACACGGTGCCTGTCTGGGTCAGGGCGTACGGCGTCCCGGCCGGGTCGATGGGCAGGGAG
ACCGGGGAGCTGGTTGGTGAGCAGGTTGGGAAGGT---------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------TCTCGAGGTGGATACAGGCGCGAATGCCGACTCG
ACGGGGGCGTTGTTCATGCGGATCAAAGTGAGAATGGACATCACCATGCCGATTATGAGGTTTGTAACATGCTTTATTCA
TGATGATGAAGACGATATGATGGCGCTTGGGGACGATGAAAAGGAGGAG--GAGAAGATTGTCGCCTTCACATACGAGAA
TATCCCTGACTTCTGCTATGGCTGTGGAATTCTTGGGCATACAGAGAAGTCATGTCCGACTGGATCCACAAGAACGGGGC
CCCGGCAGTTTGGGCCATGGCTAAGGACAGTTGTTATCA---ACAAGGGGGCCTCAGGTGAAGAGAGGACCAGACGCTCA
AAGGACAAAGCAAAATTCTGGCCAAGTAGCAGTATAAGCAGTAAACAGGGTAGCGATGGGCCGTCTTGGCGGAAAGATGT
ACCGGGCACAGAGGACGATCAAGGGGTCCAGAACAAAGTAGAAGATAAAGTTTATAAGGCTGTAAAAAGTTTGAAGCAAG
GTACTTTGA---------AG---------AGGAAGAAAGGAATCCAGCAAAATCAATCAAATATTTTGACAGAATCAAAG
AAGAGGAGGGCTCATATAATGAATGTCGATGAGGTGATAGCAGTAGCGAACAAGGCGAAGATGGAAACTGATGGGGGTGA
AGAAAAAGAAGAAAATGCTAAATCAGAAATGCTCAACGCCGGGCTGCTGGGACAGCCTGGCGAGTCCAAATGA-------
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>chr4A_1_TraesCS4A01G424600
GCAATTCCTAGGTAATACTCTGAACAGAAATGTGTCACTATGTTACACATGATGCAGGCCAGTTGATCAAATGAAACTCT
TTTCGAATGAGAAACTTCATACTGTGCAGAACATACAAACTAAACATA--------------------------GAACTG
GCAATTTCCTGAACAAATTAAACAAACAGCAATCGCCACAATGACACATATAGGCATTTGCATGAACTAGAATTCTAGCA
ATCAATTCCTTAGCAAACAGCAAACGCTGAAATCGCAACCGTGATACTCTGAGCAGTCAGTCACCGACATGCGTGGCATT
CAAATTCAAGCACCAACCTAATCTGAAGCAGAAGCGCTGGTCCACGTTCAACAGCAGGGCAAGATTTGCAACATAGT---
-GGCATCGATTTCTCAGATTAACCTCAACAGTTGAAGTACTAAAGATGCCCGGA----------------GGGCGCTAGA
AGTGGTGGGGGGAGGAAGATACCTGGAGGGGCGACTCTGGTGGCGGGTGGTGCCGGGCGAGGTGACCGGG----------
--------GGGCGGAGGAGCGCGCTGGAGGCGGAGGACGACG--------------------------------GCGCGG
ATGGGGACGGCAGAGTTGGATCTGGGCGGCGGCGGGGTAGAGGTCGCGGACGAGCCGGGCGGCGGCGGCGGCTGGCAAAG
TAGAGACGAGTGAGGGGAGGGAATGAAAAGAAGGGGAGGGAGCTGGGCTTGGGCTCGGAGGATTGGGCCGAAAAACCTCT
CTTCTCGTTGTCCCAGGCCTGGCACCG-------------TGAAGCCCAATTAGCCCAGAAGAAGCCACCCATTCCATT-
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-TTCTGAAGAGAAAAAAACATTCCCT-------------------CTCAACCCGTGTTCAAGTTCCAGCGCTCCATCCGA
AATCCAAATCTAGGGTTAGGGATGAGGGATCGAGTGAGGAATAGGA-------TCCCAAGGAATTCCTAAGAGAGAACCC
ACCACCAAAATCCCAGCTTCCGGTGCGTGCCGGCGGCGGCGGATTCGTAGCAGCACTGCTCCGGATCGGCAGCCACCACT
AAGCTCCGGCCGCCGCAATGGGGGCCTCGAGGGCAGCACCTCTGCGGGGGAAGCTCGGCAGCCTGCAGCTCTCCGAGGCC
GAGAAGAAGGGGGTCAGGATCACCGGCAAGCAGCAGCAGCAGCAG---CAGCCATGCCCCTCCCCGCAGGCGAGCGGCGG
CAAGATCCAGGCGGTGGGCAAGCTGCTCTCGGAGAAGCCGGCCATAGCGCAGCATGTGGGGACGTCTCTGGGGGCGGTCT
GGAGCCCCTCCTTCG-GGGTCAAATGCGAAGACCTCGGCCGGAATCGGTTCCTCTTCACCTTCCGCCACGAGGCCGACAA
GGAGAAGGCTCTGGATGCCGGGCCCTGGAGCTTCGCCGGTCATCTGTTGGTGATGGAGGATTTTGCGCCCGGAGCCACCA
CCGTGGACGAGCTCAGGTTCGACACGGTGCCTGTCTGGGTCAGGGCGTACGGCGTCCCGGCCGGGTCGATGGGCAGGGAG
ACCGGGGAGCTGGTTGGTGAGCAGGTTGGGAAGGT---------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------TCTCGAGGTGGATACAGGCGCGAATGCCGACTCG
ACGGGGGCGTTGTTCATGCGGATCAAAGTGAGAATGGACATCACCATGCCGATTATGAGGTTTGTAACATGCTTTATTCA
TGATGATGAAGACGATATGATGGCGCTTGGGGACGATGAAAAGGAGGAG--GAGAAGATTGTCGCCTTCACATACGAGAA
TATCCCTGACTTCTGCTATGGCTGTGGAATTCTTGGGCATACAGAGAAGTCATGTCCGACTGGATCCACAAGAACGGGGC
CCCGGCAGTTTGGGCCATGGCTAAGGACAGTTGTTATCA---ACAAGGGGGCCTCAGGTGAAGAGAGGACCAGACGCTCA
AAGGACAAAGCAAAATTCTGGCCAAGTAGCAGTATAAGCAGTAAACAGGGTAGCGATGGGCCGTCTTGGCGGAAAGATGT
ACCGGGCACAGAGGACGATCAAGGGGTCCAGAACAAAGTAGAAGATAAAGTTTATAAGGCTGTAAAAAGTTTGAAGCAAG
GTACTTTGA---------AG---------AGGAAGAAAGGAATCCAGCAAAATCAATCAAATATTTTGACAGAATCAAAG
AAGAGGAGGGCTCATATAATGAATGTCGATGAGGTGATAGCAGTAGCGAACAAGGCGAAGATGGAAACTGATGGGGGTGA
AGAAAAAGAAGAAAATGCTAAATCAGAAATGCTCAACGCCGGGCTGCTGGGACAGCCTGGCGAGTCCAAATGAGAATCCT
AGTGTGGAACTGCCGGGGATTGGGGAATGGCCCGGCAGTGAGAGGTCTTTTGGATCTCCAGGAGCAGGTTGACCCCAACA
TCCTCTT---ATCTGAAACTGAACTCGATAAGAGGAGGATGGAGAAGTTCAAGTGGATGCTAGGAATGGGGAACATGATG
GTTAGAGATTGTGAAGGAAAGAGTA--GAGGAGTGGCGTTGATACAGAAGAAAGAAGTTAAGCTGGAACTTCACAACTAC
TCTAGGTATCACATTGATGCTAAACTAGTGGAAAAAGATCGTTTCAAATGGCATTTCAAGGGCATTTATGGAGATCCTGT
TAGTGCTAAAAGGAGGATAACTTGTAACTTATTGCACATCCTCAGTCAGCAGCTTAACCTCTCATGGTTGTGCGCTGGCG
ACTTTTAACAAGATCATGTATAATCATGAGAAGAA-GGTATATGCTCAGTCAAATCTGCATAAAGAGTTGTTCTGGTTGT
TGCTGAGTCAAATGGAAAGTTTTAGAGCGGCTCTAGCAGACTGTGGATTGAGAGATTTGGGCTATGTGGTGGATAAATAC
ATGTGGCACAATCATAGGTGGTGATTATGGTATAAC--------------------------------------------
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------------------------------AAAAGGTATATTTTCAGTCAAATATGCATATAGAGTTGTTGTGGATGTTG
CAGCTTGAGAATCCATTTCAGGACTAACTTTCTCCTCAAATACAGATGAAGAAGCATGTGGTTTTAATTGGCCAAAGTTG
TGGTCGCTTCCCCTTCCAAACAAGATTCTTCACTTTTTATGGCACCTGTCTACAGACAGTTTACCCATGCGCATGAAGCT
TCAACACAGAGGGATGCATGTAGGCACTCGCTGTCCTGTTTGCTTTCATTTGGATGAGGATAGCGGACATTGCTTCATTA
AGTGTAAGAAGGTTAAATTAATGACACCCTGAAAAACAGGAAACGGCAAAGAAAGCCCAGTTGGGAGCATGTTAGATTAC
AGTTCTGTCATGTGTAGATGTTTTGAGTTGTAT
>chr5D_1
GCAATTCCTAGGTAATACTCTGAAGAGAAATGTGTCACTATGCTATACATGATGTAGCCCAGTTGATGAAATGAAACTCT
TTTCGAATGAGAAACTTCATACTGTGCAGAACATACAAACGGTATACATTTAACCTTACATGGCAGCATCACATGAACTG
GCAATTTCCTGAACAAATCAAACAAACAGCAATCGCCACAATGACACATATAGGCATTTGCATGAAGTAGAATTCTACCA
ATCAATTCCTTGGCAAACAGCAAACGCTGAAATCGCAACCGTGATACTCTGAGCAGTCAGTCTCCGACGTGCGTGGCATT
CAAATCCAAGCACCAACCTAATCT------GAAGCGCTGGTCCAAGTTCAAGAGCAGGGCA-GATTTGCAGCATAGATAG
AGGCATCGATTTCTCAGATTAACCTCGACAGTTGAACTACTAAAGACACGCATACTGGAATCCAAAAGGGGGGCGCTAGA
AGTGGTGGGGGGAGGAAGATACCTGGAGGGGCGACTCTGGTGGCGGGTGGTGCCGGGCGAGGTGACCGGGGGGCGGAGGA
TCGAGCACGGGTGGCGGGGCGCGCTGGAGGCGGAGGACGACGGGGCCGTCCGCGAGGCTCGCAGCGCGACGACGGCGCGG
ATGGGGACGGCGGAGTTGGATCTGGGCGGCGGCGAGGTGGAGGTCGCGGGCGAGCCGGGTGGCGGCGGCGGCTGGCAGAG
GAGAGACGAGTG---------------AAGAAGGGGAGGGAGCTCGGCGCA------GAGATTTGGGCCGAAAAGCCTCT
CTTCTTCTCGTCCCTATGAGAGAGAGAGGCCCGACACCGTTGAAGCCCAATTAGCCCAGAAGAATGCGCCATTCATNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
ATTCTTAAAAAAAAAAAAAAACCTCTCACCCGTCTCAACTCTCAACTCAACCCGTGTTCAAGTTCCAGCGCTGCCGCCTC
CATCTGAA--------------------ATCGAGTGAGGAATAGGATCCGAATTCCGAAGGCATTCCC--GAGAGAAGCC
ACCACCGAAAGCCTAGGCTCCTGTGCCTGGCGGCGGCGGCGGATTCCTAGCAGCACTGCG--------------------
--------------GCAATGGGGGGCTCGAGGAGAGCATTTCTGCAGGGGAAGCTGGGCAGCCTGCAGCTCTCCGAGGCC
GAGAAGAAGGGGATCAGGATCACCGGCAG------GCAGCAGCAG---CAGCCATGCCCCTCCCCGCAGGCGAGCGGCA-
--AGATCCAGGCGGTCGGCAAGCTCCTCTCGGAGAAACCGGCCATAGCGCAGCACGTGGGGACGTCTCTGGGGGCGGTGT
GGAGCCCCGGTTCCG-GCGTCGAGTGCGAGGACCTCGGCCGAAACCGGTTCCTCTTCACCTTCCGCCAGGAGGCCGACAA
GGAGAAGGCTCTGGATGCCGGGCCCTGGAGCTTCGCCGGCCATCTGCTGGTGATGGAGGATTTTGCGCCCGGAGCCACCA
CCGTGGACGAGCTCAGTTTCGACACGGTGCCGATCTGGGTCAGGACGTACGGCGTCCCGGCCGGGTCGATGAGCAGGGAG
ACCGGGGAGCTGGTTGGTGAGCAGGTTGGGAAGGT---------------------------------------------
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----------------------------------------------TCTCGAGGTGGATACTGGCCCGAATGCCGACTGG
ACGGGGGC---GTTCATGCGGATCAAAGTGAGAATGGACATCACCGTGCCGATTATGAGGTTAGTAACATGCTTTATTCA
GGATGATGAAGAGGATTTGACGGCGCTTGGGGACGATGAAAAGGAGGAGAAA--AAGATTGTCGCCTTCACATACGAGAA
TATCCCCGACTTCTGCTATGGCTGCGGAATTCTTGAGCATACAGAGAAATCATGCCCGACTGGATCCACAAGAACGGGGC
CCCGGCAGTTTGGGCCATGGCTGAGGACAGTTGTTATCA---ACAAGCGGGCCTCAGGTGAAGAGAGGACCAGGCGCTCA
AAGGACAAAGCGAAATTCTGGCCAAGTAGTAGCATAGGCAGTAAACAGGGCAGTGATGGGCCGTCCTGGCGGAAAGATGT
ACCGAGCACAGAGGACGATCAAGGGGTCCAGAACAAAGTAGAAAAGAAAGTTTACAAGGCAGTAAAAAGTTTGAAGCAAG
ATACTTTCAAGCGAATCGAG---------AGGAAGAAAGGAATCCAGCAAAATCTATCAAATATTTTGACAGAATCAAAG
AAGAGGAGGG-TGATATAATGAATGTCGATGAGGTGATACAAGCAGCGAACAAACCGAAGACAAAAACTGATGGGGGTGA
AGAAAAAGAAGAAAATGCTCACTCAGAAATGCTCAACACCGGGCTGCTGGGACAGCCTGGCGAG----------------
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>chr5B_874
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-------------------------------------------GGA-------TCCGACCGAATTCCC--GAGAGAACCC
ACCACCAAAATCCCAGCTTCCGGCGCATGGCGGCGGCGGTGGATTCGTAGCAGCACTGCTCCGGATCGGCAGCCGCTGCT
AAGCTCCAGCCGCCACAATTGGGGCCTCCAGGGCAGCACCTCTGCGGGGGAAGCTCGGCATCCTGCAGCTCTCCGAAGCC
GAGAAGATGGGGGTCAGGATCACCGGCAG---------GCAGCGG---CAGCCATGCCCGTCCCCGCAGGCGAGCGGCG-
--AGCTCCAGGCGGTCGGCAAGCTCCTCTCGGAGAGGCCGGCCAGAGCGCAGCACGTGGGGACGTCTCTGGGGGCGGTCT
GGATCCCCTCCTTCGGGGGTCAAATGCGAAGACCTTGGCCGGAACCGATTCCTCTTCACCTTCCGCTAGGAGGCCGACAA
GGAGAAGGCTCTGGATGCCGGGCCCTGGAGCTTCGCCGGCCATCTGCTGGTGATGGAGGATTTTTCGGCCGGAGCGACCA
CCATGGACGAGCGCAGGTTCGACATGGTGCCGGTCTGGGTCAGGGCGTACGGCGTCCCGGCTGGCTCGATGAGCTGGGAG
ACCGGGGAGCTGGTTGGTGAGCAGGTTGGGAAGGTTCTTGAGGTGGATACGGGCGCGAATGCCGACTCGACGGGAGCGTT
CATGCGGATCAAGGTGAGAATGGACATCACGGTCCCGATTATGAGGTTTGTGACATGCTTTATTCAGGATGATGAAGAGG
ATATGACTACACTTGGGGACGTCTCTGGGGGCGGTCTGGAGCCCCGGTTCCAGCGTCGACTGCGAGGACCTCGGCCGCCA
GGAGGCCGACAAGGACAAGGCTCTGGATGCCGGCCCTGGAGCTTCGCCGGCCATCTGCTGGTGATGGAGGATTTTGCGGG
CGGAGCGACCACCGTGGACGAGCGACGGTTCGACACGGTGCTGATCTGGGTCAGGGCGTACGGCGTCCCGGCGGGGTCGA
TGAGCAAGGAGACCAGAGAGCTGGTTGGTGAGCGGGTTGGGAAGGTTCTCGAGGTGGATACAGCCGCGAATGCCGACTCG
ACGGGAGC---GTTCATGCGGGTCAAAGTGAGAATGGACATCACGGTCCCGATTATGAGGTTTGTGACATGCTTTATTCA
GGATGATGAAGAGGATATGACTACACTTGGGGACGATGAAAAGGAGGAGAGGAGAAGATCCTCGCCTTTACCTACGAGAA
TATCCCCGACTTCTGCTATGGCTGCGGGATACTTGGGCATACAGAGAAGTCATGCCCGACTAGATCTGCAAGAACGGGGA
GCCGGCAGTTTGGGCCATGGCTAAGGACAGTTGTTATCATCAACAAGGGGGCCTCGAGTGAAGAGAGGACCAGACGCTCA
AAGGACAAATCGAAATTCTGACCAAGTAGTAGTATAGGCAGTAAACAGGGTAGCGATGGGCCGTCTTGGCGGAAAGATTT
ACCGAGAACAGAGGACGATCAAGGGGTCCAGAACAAAGTAGAAGATAAAGTTTATAAGGCTGTAAAAAGTTTGAAGCAAG
GTACTTTCA---------AG---------AGGAAGAAAGGAATCCAGCAAAATCAATCAAATATTTTGACAGAGTCGAAG
AAGAGGAATGTTGATATAATGAATGTCGATGAGGTGATACAAGTAGCAAACAAAGCGAAGATGGAAATTCATGGGGATGA
AGAAAATGC---------TCACTCAGAAATGCTAGACGCCGGGCTGCTGGGACAGCCTAGCGATTCAAAATGAGAATCCT
AGTGTGGAACTGCCGGGGATTGGTGAATGGCCCGGCAGTGAGAGGTATTCTGGATCTCCAGGAGCAGGTTGACCCCGACA
TCCTCTT---ATCTCAAACTGAACTCGATAAGAGGAGGATGGAGAATTTTGAGTGGATGCTAGGAATGGGGAACATGATG
GTTAGAGATTGTGATGGAAAGAGTATAGAGGATATGCGTTGCTGCACAAGAGATAAGTGAAGCTGGAACTGCAAAACTAC
TCCAGGTATCACATTGATACTAAACTAGTGGGAAAATATGGTTTGAAATGGTGTTTACCAGGCATTTATGGAGAGCCTGT
GAATGCTAAAAGGAAGATAACTAGGAAGTTATTGCACATCCTCAATCAGCATTTTAACCTCCCATGGTTGTGCACTGGCG
AC-TTTGACGAGATCATGTATAATCATGAGAAGAA-GGTATAT-------------------------------------
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-----------------------------------------TTTCAGTCAAATCTGCATATAGAGTTGTTGTTTATGTTG
CAGCTCAAGAATCCATTTCAGGACTAATTTCCTCCTCAAATGCAGATGAAGAAGCAGGTGGTTTTAATTGGCCAAAGTTG
TGGTCGCTTCCCCTCCCCGGCAAGATTCTTCAACTTTGATGGCGCCCGTCTACAGAGAGTTTACCCCTGCGCATGAAGCT
TCAACAAAGAGGTATGAATGTACACCGTCGCTGTCATGTTTGCATTTGTTTGGATGAGGATGGCGGACATTGCTTTATTA
AGTGT---------------------------------------------------------------------------
---------------------------------
>chr4A_993
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---------CCGCAGCAATGGGGGGCTCGAGGAGAGCATTTCTGCAGGGGAAGCTGGGCACCCTGCAGCTCACCGAGGCC
AAGAAGAAGGGGGTTCGGATCACCGACAA---------GCAGCAGCAACAGCCATGCCCCTCCCCGCAGGCGAGCGGCA-
--AGATCCAGGCGGTGGGCAAACTCCTCTCGGATAAGCCGGCGAGAGCGCAGCACGTGGGGACGCCTCTGGGGGCGGTCT
GGAGCCCCAGTTCCA-GCGTCGAATGCGAAGACCTCGGCCGGAACCGGTTCCTCTTCACCTTCCGCCAGGAGGCCGACAA
GGAGAAGGCTCTGGATGTCGGGCCCTGGAGCTTCGCCGACCATCTGTTGGTGGTGGAGGATTTTGCGCCCAGAGCCACCA
CCGTGGACGAGTGCAGCTTCGACACGGTGCCGATCTGGGTCAGGGCGTACGGCGTCCCGGGCGGGTCGATGGGCAGGGAG
ACCGGGGACCTAGTTGGCGAGCAGGTTGGGAGGGT---------------------------------------------
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----------------------------------------------TCTCAAGGTGGATCGAGGCGAGAATGCCGACTCC
ACGGGAGCGTTGTTCATGCGGATCAAAGTGAGAATGGACATCAC------------------------------------
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>chr4A_1569
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----------------------------------------TCAACATCTCGATTATGAGGTTTGTAACATGCTTCATTCA
GGATGATGAAGAGGATATGACGGCGCTTGGGGATGATGAAAAGGAGGAG-----AAGATTGTCGCCTTCACGTACGAGAA
TATCCCCGACTTCTGCTATGGCTGCGGGATTCTTGGGCATACAGAGAAGTCATGTCCAACTGGATCCACAAGAACGGGGC
CCCGGCAGTTTGGGCCATGGCTTAGGACAGTTGTTATCA---ACAAGGGGGCCTCAGGTGAAGAGAGGACCAGACGCTCA
AAGGACAAAGCAAAATTCTGGCCAAGTAGTAGTATAGGCAGTAAACAGGGTAGCGATGGGCCGTCTTGGCGGAAAGATGT
ACCGAGCACAGAGGACGATCAAGGGGTCCAGAACAAAGTAGAAAATAAAGTTTATAAGGCTGTAAAAAGTTTGAAGCAAG
GTACTTTCA---------AGCGAGTCGAGAGGAAGAACGGAATCCAGCAAAATCAATCAAATATTTTGACAGAATCAAAG
AAGAGGAAGGTTGATATAATAAATGTCGATGAGGTGATAGAAGCAGCGAACAAAGCAAAGATGAAAATTCATGAGGGTGA
AGAAAATGC---------TCACTCAGAAATGCTAAACGCCGGGCTGCTGGGACAGCCTGGCGAGACAAAATGAGAATCCT
GGTGTGGAACTGCCAGGAATTGGGGAATGGCCCGGCAGTGAGAGGTCTTCTGGATCTCCAGGAGCAGGT-----------
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>chr6B_2009
TTGAG---------------------------------------------------------------------------
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-----------------------------AGGAAGGAAAGAAACCAGTAGAACCAATTAAGTAC---GACAGAACAGAAG
AAGAGAAAGGTAATTATGATGGAAATTGATGAAGATATAGAACTAGCAAAGAAAGCAAAGATGGAAGTCGAGGAGGGTGA
AGGAAAAGAGGAGAAC---AACTCTGAAACTGCAAACGCCGGGCTGCAGGGACAGCCTGGCGAGCCAAAATGAGAATTGT
AGTATGGAACTGCCGGGGATTGGGGAATGGCCCGGCGGTGAGAGGACTTCTGGATCTTCAGAAGCAGGTGGACCCCGACA
TCCTCTTCTTATCTGAGACCAAATTGGATAAGAGGAGGATGGAAAAGTTTAAGTGGATGTTACAGATGGGAAACATGATA
GTGAGAGATTGCGAGGGGAAGAGTG--GGGGATTGGCATTGTTTTGGAAAAAAGAAGTAAATTTGGAGCTGCTCAACTAT
TCTAAGAATCATATTGACGCAAAAATAGTGGAAAAGGATGGGTTTAAATGGCGATTTACAGGTATTTATGGAGAGCCAGC
GAATGATAAAAGGAATATAACTTGGAAATTACTTCGCGTAATAAGTCAGCAGCTGAACCTTCCATGGTTGTGTGCGGGCG
AC-TTTAATGAGATCATGTATAACCATGAGAAGAGAGG------------------------------------------
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>chr4D_2012
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--------A---------AG---------AGGAAGGAAGGGTTCCAGCAAAATCAATCAAATAG---GGCAGATTCAAAT
AAAAGGAAGGTTGATATAATGGAAGTGGATGAGGTGATAGAATCAGCAAAGAAAGCAAAAATGGAAGTTGATGGTGATGA
AGTAAAGGAAGGAAACAATAATTCAGCAACTATAAACGCTGGGCTGCAGGGACAGCCTGGCAAGCTAAAATGAGGATTTT
AGTGTGGAACTGCCGGGGATTGGGGAATGGCCCGACAGTGAGAGGTCTTCTGGATCTTCAGA---AGGTGGACCCTGACA
TCCTCTTCTTATCTGAAACTAAACTAGATAAAAGGAGGATGGAGAAGTTTAAGTGGAAGCTAGGTATGAGGAACATGATG
ACAAGGGATTGTGAAGGAAAGAGTG--GAGGGTTGGCATTACTATGGAAGAATGAAGTAAACTTGGAGCTGCACAACTAC
TCCAGGTATCATATTGATGTAAAAGTAGTGGAGACAGATGGTTTTAAATGGCGCTTCACGGGCATTTATGGGGAGCCTGC
AAGCGACAAAAAGAAGATAACTTGGAAGTTATTGCGCAGCCTTAATCAACAGCTTAATCTCCCATGGTTATGCGCTGGCG
AT-TTTAATGAGATCGTGTATAGTCATGAGAAGAA-GGGGGGCCAGCTAGAAAACAC-----------------------
-----AGTCAAATGGAAAGTTTTAGAGCAGCCCTAGCAGATTGTGGATTGAGAGATTTGGGCTATGTGGGAGATAAATAC
ACATGGCAAAATCATAGTTGGGAT--------------------------------------------------------
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>chr4A_2049
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---------------------------------------------------------------TTGTGACAGAAGCAAAG
AAGAGGAAGGGTGACACAATGGATGTCGATGATGAGTTAGAGTTAGCGAAGAAGGCGAAGATGGAGGTTGATGGGGATGC
AGAAAAAGAAGAATGCACTAACTCGGAATATGGGAACGCCGGGCTGCAGGGTCAGCCTGGCGAGTCAAAATGAGAATTTT
AGTGTGGAACTGCCGGGGATTGGGGAACGGCCCGGCAGTAAGAGGACTTCTGGATCTCCAGAAGCAGGTGGACCCCGACA
TCCTTTTCTTATCTGAAACCAAGAGGGATGAGAGGAGGATGGAAAGATTTAAATGGATGTTAGGGATGGGGAACATGGTA
GTCAAAGATTGTGAAGGGAAGAGTG--GGGGATTGGCGTTGCTATGGAAAAAAGAAGTAAATCTAGAGCTGCACAACTAC
TCCAGATATCACATTGATGCTATAATAGAGGAAAGAGATGGTTTCAAATGGCGATTTACAGGCATCTATGGAGAACCAGC
AAGTGACAAAAGGAAGATAACATGGAGGTTAATGCGCATCCTAAATCAGCAGTTAAACCTCCCATGGTTATGCGCTGGCG
AT-TTTAATGAGATCATGTATAATCATGAGAAGAAAGGGGGGCCAGCTAGAGCACAA-----------------------
-----AGCCAAATGGAGAATTTTAGAGCAGCTCTAGCAGACTGTGGATTGACAGATTTGGGCTATGTGGGGGACAAATAC
ACATGGCGCAATCAGAGTTGGGATGTTAAACGCTTTGTTAAAGAAAGATTGGATAGAGCAGTGGGGACGAAGAGCTGGTG
CACAAGATTCCCTTACTTCAAAGTTTTAAATGGGGACCCATACCACTCAGATCACAGACCAGTAACCATCCAAATAGAAG
AATCTGAGAGTTCACATATGCCCAGGAGAAGGATTCGCAGCTTCAGGTTTGAAGCTAGATGGTTACAAGAAGAGGAATGT
GAGTTTTTGGTTAATAATGCTTGGGCTAAAGCTAGCATACAAGGGGAACATAATACCCAGGGGATGTTACGCATGGTAGC
AAGAGAGTTAAAGGACTGGGATGCTAATGTTTTAGGCGATCTCCAAAAGCGTATTAAAACCCTTAAGAAAGAACTGGAGG
AGGTACGCAGAGGGGACATCAACCAAGAAGGAGTCAGCAGAGAGCACTTATTAATGGAGAAGCTAGACCGTTTGGAACAG
CAGCAAGATACGCATTGGAAACAACGAGCCCATATTAAATGGTTGCAAGATGGTGACAAGAACACATCCTTCTTTCATGC
TTTTGCCTCCGAAAGAAAGAAAAGGAATACCATTAAGAAACTTAAAAGGGAGGGTGGTAGTTGGGTGGAGGGGCAGGAAC
ATTTGAAAGAGCATATTGCAAACTACTTTTCAAATATATTCTCCTCCACGATGACAGGAGATAATGGGGAAATTATGCGA
GTGGTGCAGCCAAAGGTGACGCCAGAGATGAATGACATGCTATGTGCTGAATATACAGAAGAGGAGGTGAAAAGAGCCTT
AGATAGCATCGGTGACTTAAAAGCTCCAGGACCTGATGGTATGCCAGCCATTTTCTTTAAAAGGTTTTGGAAAACAGTGG
GGAACCAGATCACTAAAGAAGTTCTGCATATATTGAGAGGAGGAGATATGCCTGAAGGATGGAATGATACCCTAATAGTG
CTTATTCCGAAGAACACCAAGCCAATGAGCTTAAAGGATCTAAGACCTATAAGTTTGTGCAATGTGGTATATAAGGTGGT
CTCTAAGGCAATCACAAATAGACTCAAGGAAATTCTCCCCCACATTGTCTCCCCTAATCAGAGTGCCTTTGTACCCGGAA
GACTAATTTCAGATAATATTCTATTGGCATATGAACTAACACATTTCCTACAAAGGAAAAGAAGGGGTCCCGTGGGCTAT
GCGGCCATCAAACTGGACATGAGCAAAGCTTACGACCGCGTTGAATGGAAATTTTTAGAAGATATGATGAAAAGATTGGG
TTTTGATAGGAATTGGATCAGACTGATAATGAAGTGTGTCTCAACTGTCAAGTACCAAATCAAGGTGAACCAAGATACAA
CTGATATGATTACACCCCAAAGAGGACTGCGCCAAGGAGATCCACTTTCCCCTTATTTGTTCGTCATCTGTGCTGAGGGG
TTCTCCTCTATGTTATATGAAGCTGAGATGAGGAGATCACTAAAAGGAATCAAGGTATGTAGGGGAGCCCCTAGTGTAAG
CCATCTATTCTTTGCGGATGATTCATTACTTCTATTGGAGGCCAATGCTGAAAGTGCTCAGGAAATTAATAGAATTCTAA
ATCTTTATGAAGCTGCTTCAGGACAAGTGATTAATAAAGATAAATCCTCAATACTATTCAGTGCAAACACAAGGCAAGGG
TTGAAGGAAAAAATGAAAAGCATTCTGCAAGTTACCTCTCAAGGTCTATTCCCAAGATATCTTGGTGTTCCATCCTATGT
GGGTAAGGCCAAAGCAAGAACCTTTGAGTATGTAAAAGAGAGGGTGTGGAAAAAGATCCAAGGATGGAAGGAAAAACTCC
TATCGAAAGGTGGAAAAGAAATCCTCATTAAAGCGGTAGCACAAGCAATCCCGGTGTATTCCATGGCTTGCTTTGATCTA
ACCAAGACCCTATGTGAAGAGTTGAGCAATATGATAAATAGATACTGGTGGAGCCAAGTGGATAAAGAGAATAAAATACA
TTGGGCTAGCTGGGAGAAGATGACGAAGACGAAGAAAACAGGAGGCTTGGGATTTAGGGATCTCCATGCCTTCAATCTGG
CCATGCTTGCAAGGCAAGCATGGAGGCTCATTCAAAACCCAGCTTCCTTATGTGCGCAGGTCCTGTCAGCAAGATACTAT
TCAGATGGCTCAGTTCTTCAAGCCAGGCCTAGAAGCGGCATATCCTACACATGGCGCAGTATACTAAAAGGAGTAGATCT
GCTCAAGAAAGGGATCATATGGAGAGTAGGCAGTGGTAGCAACATCAATATTTGGTCTGATCCCTGGATTCCAAGAGGAA
GTACTAGGAGAGTCATCACACAGAGGGGTGGAAATGTTGTAACTAAAGTAAATGATTTGATTGATCCTACCACAAACAAT
TGGGATGAAGACTTAGTTAGACAAACCTTTCTCCCTGAAGATGCAAATATTATTCTACAAATCCCAATTCATACACATGA
AGATGATTGCATAGCATGGCATTATGATAAAAAAGGTATATTTTCGGTGAAATCAGCTTATAGAGTTGCTGTAGACACCA
CGGCTCGTGAATCTATTTCAGGACTAACTTCTTCCTCAAGTACAGATGAAGATACATGTGGTTTTAATTGGCCAAAGTTG
TGGTCGCTTCCCCTCCCCAACAAGGTTCTTCACTTCTTATGGCGCATGTCCACAAATACCTTACCACTGCGCATGAAGCT
CCAGCAAAGAGGTATGCAAGTTGACACCCGTTGTCCAATCTGTTTTCGGTTGGATGAGGATGGTGGCCATTGTTTCATTA
AGTGTAAGAGGGTAAA----------------------------------------------------------------
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>chrUn_2049
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---------------------------------------------------------------TTGTGACAGAAGCAAAG
AAGAGGAAGGGTGACACAATGGATGTCGATGATGAGTTAGAGTTAGCGAAGAAGGCGAAGATGGAGGTTGATGGGGATGC
AGAAAAAGAAGAATGCACTAACTCGGAATATGGGAACGCCGGGCTGCAGGGTCAGCCTGGCGAGTCAAAATGAGAATTTT
AGTGTGGAACTGCCGGGGATTGGGGAACGGCCCGGCAGTAAGAGGACTTCTGGATCTCCAGAAGCAGGTGGACCCCGACA
TCCTTTTCTTATCTGAAACCAAGAGGGATGAGAGGAGGATGGAAAGATTTAAATGGATGTTAGGGATGGGGAACATGGTA
GTCAAAGATTGTGAAGGGAAGAGTG--GGGGATTGGCGTTGCTATGGAAAAAAGAAGTAAATCTAGAGCTGCACAACTAC
TCTAGATATCACATTGATGCTATAATAGAGGAAAGAGATGGTTTCAAATGGCGATTTACAGGCATCTATGGAGAACCAGC
AAGTGACAAAAGGAAGATAACATGGAGGTTAATGCGCATCCTAAATCAGCAGTTAAACCTCCCATGGTTATGCGCTGGCG
AT-TTTAATGAGATCATGTATAATCATGAGAAGAA---------------------------------------------
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>chr5A_2052
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------------------------------------------------------------------TGACAGAAGCAAAG
AAGAGGAAGGGTGACACAATGGATGTCGATGATGAGTTAGAGTTAGCGAAGAAGGCGAAGATGGAGGTTGATGGGGATGC
AGAAAAAGAAGAATGCACTAACTCGGAATATGGGAACGCCGGGCTGCAGGGTCAGCCTGGCGAGTCAAAATGAGAATTTT
AGTGTGGAACTGCCGGGGATTGGGGAACGGCCCGGCAGTAAGAGGACTTCTGGATCTCCAGAAGCAGGTGGACCCCGACA
TCCTTTTCTTATCTGAAACCAAGAGGGATGAGAGGAGGATGGAAAGATTTAAATGGATGTTAGGGATGGGGAACATGGTA
GTCAAAGATTGTGAAGGGAAGAGTG--GGGGATTGGCGTTGCTATGGAAAAAAGAAGTAAATCTAGAGCTGCACAACTAC
TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNN-----------------------------------------------------------------
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-----------------------CTGCATATATTGAGAGGAGGAGATATGCCTGAAGGATGGAATGATACCCTAATAGTG
CTTATTCCGAAGAACACCAAGCCAATGAGCTTAAAGGATCTAAGACCTATAAGTTTGTGCAATGTGGTATATAAGGTGGT
CTCTAAGGCAATCACAAATAGACTCAAGGAAATTCTCCCCCACATTGTCTCCCCTAATCAGAGTGCCTTTGTACCCGGAA
GACTAATTTCAGATAATATTCTATTGGCATATGAACTAACACATTTCCTACAAAGGAAAAGAAGGGGTCCCGTGGGCTAT
GCGGCCATCAAACTGGACATGAGCAAAGCTTACGACCGCGTTGAATGGAAATTTTTAGAAGATATGATGAAAAGATTGGG
TTTTGATAGGAATTGGATCAGACTGATAATGAAGTGTGTCTCAACTGTCAAGTACCAAATCAAGGTGAACCAAGATACAA
CTGATATGATTACACCCCAAAGAGGACTGCGCCAAGGAGATCCACTTTCCCCTTATTTGTTCGTCATCTGTGCTGAGGGG
TTCTCCTCTATGTTATATGAAGCTGAGATGAGGAGATCACTAAAAGGAATCAAGGTATGTAGGGGAGCCCCTAGTGTAAG
CCATCTATTCTTTGCGGATGATTCATTACTTCTATTGGAGGCCAATGCTGAAAGTGCTCAGGAAATTAATAGAATTCTAA
ATCTTTATGAAGCTGCTTCAGGACAAGTGATTAATAAAGATAAATCCTCAATACTATTCAGTGCAAACACAAGGCAAGGG
TTGAAGGAAAAAATGAAAAGCATTCTGCAAGTTACCTCTCAAGGTCTATTCCCAAGATATCTTGGTGTTCCATCCTATGT
GGGTAAGGCCAAAGCAAGAACCTTTGAGTATGTAAAAGAGAGGGTGTGGAAAAAGATCCAAGGATGGAAGGAAAAACTCC
TATCGAAAGGTGGAAAAGAAATCCTCATTAAAGCGGTAGCACAAGCAATCCCGGTGTATTCCATGGCTTGCTTTGATCTA
ACCAAGACCCTATGTGAAGAGTTGAGCAATATGATAAATAGATACTGGTGGAGCCAAGTGGATAAAGAGAATAAAATACA
TTGGGCTAGCTGGGAGAAGATGACGAAGACGAAGAAAACAGGAGGCTTGGGATTTAGGGATCTCCATGCCTTCAATCTGG
CCATGCTTGCAAGGCAAGCATGGAGGCTCATTCAAAACCCAGCTTCCTTATGTGCGCAGGTCCTGTCAGCAAGATACTAT
TCAGATGGCTCAGTTCTTCAAGCCAGGCCTAGAAGCGGCATATCCTACACATGGCGCAGTATACTAAAAGGAGTAGATCT
GCTCAAGAAAGGGATCATATGGAGAGTAGGCAGTGGTAGCAACATCAATATTTGGTCTGATCCCTGGATTCCAAGAGGAA
GTACTAGGAGAGTCATCACACAGAGGGGTGGAAATGTTGTAACTAAAGTAAATGATTTGATTGATCCTACCACAAACAAT
TGGGATGAAGACTTAGTTAGACAAACCTTTCTCCCTGAAGATGCAAATATTATTCTACAAATCCCAATTCATACACATGA
AGATGATTGCATAGCATGGCATTATGATAAAAAAGGTATATTTTCGGTGAAATCAGCTTATAGAGTTGCTGTAGACACCA
CGGCTCGTGAATCTATTTCAGGACTAACTTCTTCCTCAAGTACAGATGAAGATACATGTGGTTTTAATTGGCCAAAGTTG
TGGTCGCTTCCCCTCCCCAACAAGGTTCTTCACTTCTTATGGCGCATGTCCACAAATACCTTACCACTGCGCATGAAGCT
CCAGCAAAGAGGTATGCAAGTTGACACCCGTTGTCCAATCTGTTTTCGGTTGGATGAGGATGGTGGCCATTGTTTCATTA
AGTGTAAGAGGGTAAA----------------------------------------------------------------
---------------------------------
>SNPs
------------------------S-----------------S--S--------S--S---------S------------
----------------------------------------SSS-S-S---------------------------------
------------------S-----------------------------------------------S----------S--
-----------S--------------------------------------------------S-----S-----------
-----S------------------SSSSSS--------------S------S---------S--------S-----S---
--------------------------S---------S---------SS-S-SS---------------------------
--------------------------------------------------------------------------------
-----------S--S--S--------------------------------------------------------------
-----------S----------------------S---S----------S---------S-----------------S--
S-----------SSSSSSSSSSSSSSS-----------------S---SSSSSSSSS---SS------------S-----
-----SS-S-----SSSSSSS-SSSSS-------------------------------------SS-S--SS-SSSSSS-
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-----S--S-S-------S-SS-S------------------------------------------------S-SS--SS
S---SS--SSSSSSSSSSSSSSSSSSSS----------------------------S----------SSS----------
--------------------------S--S--------------------------------------------S-SS--
-------S------------------------------------------------------------------------
-----------------------------SSSSSS--------------------------------------------S
SS----------------------S-----------------------------S-------------------------
--------------------------------------------S-----------------------S-----------
---------------------------------------S----------------------------------------
-------------------------------S------------------------------------------------
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S-----------S-------S-----------------------------------------------------------
------S-----------------S-------------------------------------------------------
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-----------------------------S------S-------------------------------------------
----S---------------------------------------------------------------------------
-------S------------------------------------------------------------------------
----------S-S---------------------------S---------------------------------------
---------------------S--------------------------------------------S-------------
-------------------------------------------------S--------------------------S---
-------------------------------------------------S------------------------------
--------------------------------S--------S----------------S-----------S---------
---------------------------------------S------------S-----S---------------S-----
S-------------S---------S--S---------------------------------S------------------
--S------S---------------------------------SSS-SSSS---SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-----------------------S----------------------------------------S----------
-SS--------------S---SSSS-SSSSSSSSSS--------------------------------------------
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-----------------------------------------------------S------------------S-------
-----S------------------------S-------------------------------------------------
--------------S--S-------------------------S------------S---------S-------------
------S-----S----------S-----------------------S-------------S------------------
---------S---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1196
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--------------------------------------------------------TTCAAGTTCCAGCGCTCCAT----
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>reverse_3090
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-------------------------------------------------TTGGATCTCCAGGAGCAGGT-----------
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---------------------------------
