Multiple sequence alignment - TraesCS4A01G411100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G411100 chr4A 100.000 2456 0 0 1 2456 683788800 683786345 0.000000e+00 4536
1 TraesCS4A01G411100 chr4A 83.402 729 62 30 536 1234 683801703 683801004 2.680000e-174 621
2 TraesCS4A01G411100 chr4A 76.923 975 105 70 702 1639 641502180 641503071 6.230000e-121 444
3 TraesCS4A01G411100 chr4A 85.965 342 28 7 901 1224 683806381 683806042 5.030000e-92 348
4 TraesCS4A01G411100 chr4A 80.873 481 49 27 1290 1769 683801008 683800570 3.030000e-89 339
5 TraesCS4A01G411100 chr4A 80.042 481 47 31 1291 1769 683806001 683805568 6.590000e-81 311
6 TraesCS4A01G411100 chr4A 93.377 151 5 1 39 184 683802200 683802050 4.110000e-53 219
7 TraesCS4A01G411100 chr4A 89.820 167 13 2 1874 2040 90430822 90430984 6.880000e-51 211
8 TraesCS4A01G411100 chr4D 81.255 1339 116 60 420 1700 477024351 477023090 0.000000e+00 957
9 TraesCS4A01G411100 chr4D 86.441 590 38 11 901 1457 477030780 477030200 2.090000e-170 608
10 TraesCS4A01G411100 chr4D 78.692 535 57 23 368 864 477031295 477030780 1.100000e-78 303
11 TraesCS4A01G411100 chr4B 80.535 1382 133 66 368 1700 601278126 601276832 0.000000e+00 937
12 TraesCS4A01G411100 chr4B 79.501 1483 143 77 343 1769 601285563 601284186 0.000000e+00 905
13 TraesCS4A01G411100 chr4B 81.648 801 77 41 988 1769 601306730 601305981 3.490000e-168 601
14 TraesCS4A01G411100 chr5B 80.416 817 57 56 700 1457 669909935 669909163 6.020000e-146 527
15 TraesCS4A01G411100 chr5B 87.778 90 7 2 1866 1955 576090061 576089976 4.320000e-18 102
16 TraesCS4A01G411100 chr3D 79.418 481 47 35 1849 2304 26680115 26679662 2.390000e-75 292
17 TraesCS4A01G411100 chrUn 78.043 460 62 27 1841 2279 267176743 267177184 1.130000e-63 254
18 TraesCS4A01G411100 chr3B 78.043 460 62 27 1841 2279 45284379 45283938 1.130000e-63 254
19 TraesCS4A01G411100 chr3B 78.043 460 62 27 1841 2279 45287713 45287272 1.130000e-63 254
20 TraesCS4A01G411100 chr1D 87.624 202 21 2 1839 2040 452254983 452254786 5.280000e-57 231
21 TraesCS4A01G411100 chr7A 85.354 198 25 2 1841 2038 25857320 25857513 4.140000e-48 202
22 TraesCS4A01G411100 chr2B 86.932 176 17 4 1839 2013 8490709 8490879 2.490000e-45 193
23 TraesCS4A01G411100 chr7D 85.714 112 15 1 1929 2040 25004172 25004282 1.540000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G411100 chr4A 683786345 683788800 2455 True 4536.0 4536 100.0000 1 2456 1 chr4A.!!$R1 2455
1 TraesCS4A01G411100 chr4A 641502180 641503071 891 False 444.0 444 76.9230 702 1639 1 chr4A.!!$F2 937
2 TraesCS4A01G411100 chr4A 683800570 683806381 5811 True 367.6 621 84.7318 39 1769 5 chr4A.!!$R2 1730
3 TraesCS4A01G411100 chr4D 477023090 477024351 1261 True 957.0 957 81.2550 420 1700 1 chr4D.!!$R1 1280
4 TraesCS4A01G411100 chr4D 477030200 477031295 1095 True 455.5 608 82.5665 368 1457 2 chr4D.!!$R2 1089
5 TraesCS4A01G411100 chr4B 601276832 601278126 1294 True 937.0 937 80.5350 368 1700 1 chr4B.!!$R1 1332
6 TraesCS4A01G411100 chr4B 601284186 601285563 1377 True 905.0 905 79.5010 343 1769 1 chr4B.!!$R2 1426
7 TraesCS4A01G411100 chr4B 601305981 601306730 749 True 601.0 601 81.6480 988 1769 1 chr4B.!!$R3 781
8 TraesCS4A01G411100 chr5B 669909163 669909935 772 True 527.0 527 80.4160 700 1457 1 chr5B.!!$R2 757
9 TraesCS4A01G411100 chr3B 45283938 45287713 3775 True 254.0 254 78.0430 1841 2279 2 chr3B.!!$R1 438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 4673 0.036388 AATCACGGACATGAAGCGGT 60.036 50.0 0.0 0.0 30.82 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1831 6223 0.038526 AGACACGCCCTAACGAACAG 60.039 55.0 0.0 0.0 36.7 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.808543 GAGTTCCAAAACAGATGACGCT 59.191 45.455 0.00 0.00 37.88 5.07
25 26 3.214328 AGTTCCAAAACAGATGACGCTT 58.786 40.909 0.00 0.00 37.88 4.68
26 27 4.385825 AGTTCCAAAACAGATGACGCTTA 58.614 39.130 0.00 0.00 37.88 3.09
27 28 4.213482 AGTTCCAAAACAGATGACGCTTAC 59.787 41.667 0.00 0.00 37.88 2.34
28 29 4.002906 TCCAAAACAGATGACGCTTACT 57.997 40.909 0.00 0.00 0.00 2.24
29 30 4.385825 TCCAAAACAGATGACGCTTACTT 58.614 39.130 0.00 0.00 0.00 2.24
30 31 4.451096 TCCAAAACAGATGACGCTTACTTC 59.549 41.667 0.00 0.00 0.00 3.01
32 33 5.277779 CCAAAACAGATGACGCTTACTTCAA 60.278 40.000 0.00 0.00 0.00 2.69
33 34 6.198687 CAAAACAGATGACGCTTACTTCAAA 58.801 36.000 0.00 0.00 0.00 2.69
35 36 6.371809 AACAGATGACGCTTACTTCAAAAA 57.628 33.333 0.00 0.00 0.00 1.94
36 37 5.748592 ACAGATGACGCTTACTTCAAAAAC 58.251 37.500 0.00 0.00 0.00 2.43
38 39 6.183360 ACAGATGACGCTTACTTCAAAAACAA 60.183 34.615 0.00 0.00 0.00 2.83
39 40 6.690957 CAGATGACGCTTACTTCAAAAACAAA 59.309 34.615 0.00 0.00 0.00 2.83
41 42 7.757624 AGATGACGCTTACTTCAAAAACAAAAA 59.242 29.630 0.00 0.00 0.00 1.94
93 4237 6.038714 ACAAACTTCTCTCCAGTTAAAAGCTG 59.961 38.462 0.00 0.00 33.12 4.24
114 4258 8.329203 AGCTGGTTAATTGTTCTTCTTCTAAG 57.671 34.615 0.00 0.00 0.00 2.18
194 4343 8.093307 AGAGCTGATGTAAATCACTACATATGG 58.907 37.037 7.80 0.00 41.54 2.74
195 4344 7.739825 AGCTGATGTAAATCACTACATATGGT 58.260 34.615 7.80 0.00 41.54 3.55
196 4345 7.875041 AGCTGATGTAAATCACTACATATGGTC 59.125 37.037 7.80 0.00 41.54 4.02
197 4346 7.148738 GCTGATGTAAATCACTACATATGGTCG 60.149 40.741 7.80 0.00 41.54 4.79
198 4347 7.151976 TGATGTAAATCACTACATATGGTCGG 58.848 38.462 7.80 0.00 41.54 4.79
199 4348 5.849510 TGTAAATCACTACATATGGTCGGG 58.150 41.667 7.80 0.00 0.00 5.14
200 4349 4.351874 AAATCACTACATATGGTCGGGG 57.648 45.455 7.80 0.00 0.00 5.73
202 4351 3.598693 TCACTACATATGGTCGGGGTA 57.401 47.619 7.80 0.00 0.00 3.69
204 4353 4.485875 TCACTACATATGGTCGGGGTAAT 58.514 43.478 7.80 0.00 0.00 1.89
205 4354 5.643176 TCACTACATATGGTCGGGGTAATA 58.357 41.667 7.80 0.00 0.00 0.98
206 4355 5.477984 TCACTACATATGGTCGGGGTAATAC 59.522 44.000 7.80 0.00 0.00 1.89
207 4356 5.244402 CACTACATATGGTCGGGGTAATACA 59.756 44.000 7.80 0.00 0.00 2.29
208 4357 6.021030 ACTACATATGGTCGGGGTAATACAT 58.979 40.000 7.80 0.00 0.00 2.29
209 4358 5.836024 ACATATGGTCGGGGTAATACATT 57.164 39.130 7.80 0.00 0.00 2.71
210 4359 6.195600 ACATATGGTCGGGGTAATACATTT 57.804 37.500 7.80 0.00 0.00 2.32
211 4360 7.319052 ACATATGGTCGGGGTAATACATTTA 57.681 36.000 7.80 0.00 0.00 1.40
212 4361 7.163441 ACATATGGTCGGGGTAATACATTTAC 58.837 38.462 7.80 0.00 0.00 2.01
213 4362 5.633655 ATGGTCGGGGTAATACATTTACA 57.366 39.130 0.00 0.00 0.00 2.41
214 4363 5.432680 TGGTCGGGGTAATACATTTACAA 57.567 39.130 0.00 0.00 0.00 2.41
215 4364 5.813383 TGGTCGGGGTAATACATTTACAAA 58.187 37.500 0.00 0.00 0.00 2.83
216 4365 6.243900 TGGTCGGGGTAATACATTTACAAAA 58.756 36.000 0.00 0.00 0.00 2.44
217 4366 6.718454 TGGTCGGGGTAATACATTTACAAAAA 59.282 34.615 0.00 0.00 0.00 1.94
266 4415 7.956420 AAGTACAACAGATCGAATTGTAACA 57.044 32.000 16.25 0.96 39.75 2.41
267 4416 7.956420 AGTACAACAGATCGAATTGTAACAA 57.044 32.000 16.25 0.00 39.75 2.83
268 4417 8.018677 AGTACAACAGATCGAATTGTAACAAG 57.981 34.615 16.25 3.57 39.75 3.16
269 4418 7.870954 AGTACAACAGATCGAATTGTAACAAGA 59.129 33.333 16.25 0.00 39.75 3.02
270 4419 7.672983 ACAACAGATCGAATTGTAACAAGAT 57.327 32.000 9.64 0.00 34.84 2.40
271 4420 8.771920 ACAACAGATCGAATTGTAACAAGATA 57.228 30.769 9.64 0.00 34.84 1.98
272 4421 9.383519 ACAACAGATCGAATTGTAACAAGATAT 57.616 29.630 9.64 0.00 34.84 1.63
273 4422 9.642312 CAACAGATCGAATTGTAACAAGATATG 57.358 33.333 5.71 0.00 34.63 1.78
274 4423 8.370493 ACAGATCGAATTGTAACAAGATATGG 57.630 34.615 3.61 0.00 33.29 2.74
275 4424 8.204160 ACAGATCGAATTGTAACAAGATATGGA 58.796 33.333 3.61 0.00 33.29 3.41
298 4447 7.226523 TGGAATTATCACATACGATTCAGTTGG 59.773 37.037 0.00 0.00 0.00 3.77
299 4448 5.984233 TTATCACATACGATTCAGTTGGC 57.016 39.130 0.00 0.00 0.00 4.52
306 4456 1.002366 CGATTCAGTTGGCTCTTCCG 58.998 55.000 0.00 0.00 37.80 4.30
307 4457 1.373570 GATTCAGTTGGCTCTTCCGG 58.626 55.000 0.00 0.00 37.80 5.14
309 4459 0.321671 TTCAGTTGGCTCTTCCGGAG 59.678 55.000 3.34 0.00 44.49 4.63
319 4469 0.472471 TCTTCCGGAGCAACACCTTT 59.528 50.000 3.34 0.00 0.00 3.11
324 4474 2.105134 TCCGGAGCAACACCTTTAAGAA 59.895 45.455 0.00 0.00 0.00 2.52
345 4495 4.345859 AGGAATAAACGTCCTTGTGTCA 57.654 40.909 0.00 0.00 43.26 3.58
347 4497 3.187842 GGAATAAACGTCCTTGTGTCACC 59.812 47.826 0.00 0.00 31.94 4.02
354 4515 1.183030 TCCTTGTGTCACCGTCCGAT 61.183 55.000 0.00 0.00 0.00 4.18
355 4516 0.320421 CCTTGTGTCACCGTCCGATT 60.320 55.000 0.00 0.00 0.00 3.34
365 4526 2.733026 CACCGTCCGATTAAAAACGACT 59.267 45.455 0.00 0.00 37.31 4.18
366 4527 2.733026 ACCGTCCGATTAAAAACGACTG 59.267 45.455 0.00 0.00 37.31 3.51
416 4579 0.606401 AGACCAACCACTGAATGCCG 60.606 55.000 0.00 0.00 0.00 5.69
456 4619 6.147821 AGACAACGTCTTCAACAAGATAATGG 59.852 38.462 0.00 0.00 40.28 3.16
459 4622 3.370978 CGTCTTCAACAAGATAATGGCGT 59.629 43.478 0.00 0.00 40.88 5.68
465 4628 6.176975 TCAACAAGATAATGGCGTAAGTTG 57.823 37.500 0.00 0.00 41.68 3.16
480 4646 4.666253 TTGGCCACTGCTGAGCCC 62.666 66.667 3.88 4.35 46.55 5.19
490 4659 0.895100 TGCTGAGCCCAACCAATCAC 60.895 55.000 0.23 0.00 0.00 3.06
493 4662 1.002624 GAGCCCAACCAATCACGGA 60.003 57.895 0.00 0.00 0.00 4.69
496 4665 0.965363 GCCCAACCAATCACGGACAT 60.965 55.000 0.00 0.00 0.00 3.06
497 4666 0.810648 CCCAACCAATCACGGACATG 59.189 55.000 0.00 0.00 0.00 3.21
499 4668 2.158559 CCAACCAATCACGGACATGAA 58.841 47.619 0.00 0.00 30.82 2.57
500 4669 2.162208 CCAACCAATCACGGACATGAAG 59.838 50.000 0.00 0.00 30.82 3.02
501 4670 1.453155 ACCAATCACGGACATGAAGC 58.547 50.000 0.00 0.00 30.82 3.86
504 4673 0.036388 AATCACGGACATGAAGCGGT 60.036 50.000 0.00 0.00 30.82 5.68
538 4744 1.942657 CATGAAGCGGTTAGGTGGATG 59.057 52.381 0.00 0.00 0.00 3.51
541 4747 1.205460 AAGCGGTTAGGTGGATGGGT 61.205 55.000 0.00 0.00 0.00 4.51
555 4761 6.445786 AGGTGGATGGGTCATAAAACTAGTTA 59.554 38.462 8.92 0.00 0.00 2.24
585 4797 8.831715 ACACAAACATTTATTTGATTCCCTTC 57.168 30.769 5.30 0.00 41.28 3.46
595 4807 0.808847 GATTCCCTTCGTGCCGTACC 60.809 60.000 0.00 0.00 0.00 3.34
874 5128 3.349927 CTCACCATTTCTCTTGCCATCA 58.650 45.455 0.00 0.00 0.00 3.07
875 5129 3.952323 CTCACCATTTCTCTTGCCATCAT 59.048 43.478 0.00 0.00 0.00 2.45
876 5130 3.949754 TCACCATTTCTCTTGCCATCATC 59.050 43.478 0.00 0.00 0.00 2.92
877 5131 3.697542 CACCATTTCTCTTGCCATCATCA 59.302 43.478 0.00 0.00 0.00 3.07
878 5132 4.341235 CACCATTTCTCTTGCCATCATCAT 59.659 41.667 0.00 0.00 0.00 2.45
879 5133 4.583489 ACCATTTCTCTTGCCATCATCATC 59.417 41.667 0.00 0.00 0.00 2.92
880 5134 4.583073 CCATTTCTCTTGCCATCATCATCA 59.417 41.667 0.00 0.00 0.00 3.07
887 5141 1.174783 GCCATCATCATCATGCCCTC 58.825 55.000 0.00 0.00 0.00 4.30
913 5171 0.531200 GCGACGCCCCTATATAAGCT 59.469 55.000 9.14 0.00 0.00 3.74
946 5212 0.459078 GCGTAGGAGTAGGACCCAAC 59.541 60.000 0.00 0.00 0.00 3.77
954 5220 5.351405 AGGAGTAGGACCCAACTTAAATCT 58.649 41.667 0.00 0.00 0.00 2.40
959 5225 4.336280 AGGACCCAACTTAAATCTGCTTC 58.664 43.478 0.00 0.00 0.00 3.86
969 5235 6.974965 ACTTAAATCTGCTTCCAAAGACAAG 58.025 36.000 0.00 0.00 0.00 3.16
970 5236 6.547510 ACTTAAATCTGCTTCCAAAGACAAGT 59.452 34.615 0.00 0.00 0.00 3.16
979 5264 5.367945 TTCCAAAGACAAGTAGACAACCT 57.632 39.130 0.00 0.00 0.00 3.50
980 5265 6.488769 TTCCAAAGACAAGTAGACAACCTA 57.511 37.500 0.00 0.00 0.00 3.08
981 5266 5.850614 TCCAAAGACAAGTAGACAACCTAC 58.149 41.667 0.00 0.00 46.34 3.18
1008 5319 4.656117 ACGCACGCCATGTCGTCA 62.656 61.111 0.00 0.00 41.21 4.35
1474 5864 0.179045 AGGCGACAGTGCTTTGTTCT 60.179 50.000 0.00 0.00 34.52 3.01
1475 5865 0.040958 GGCGACAGTGCTTTGTTCTG 60.041 55.000 0.00 0.00 35.60 3.02
1476 5866 0.937304 GCGACAGTGCTTTGTTCTGA 59.063 50.000 0.00 0.00 33.93 3.27
1477 5867 1.333258 GCGACAGTGCTTTGTTCTGAC 60.333 52.381 0.00 0.00 33.93 3.51
1478 5868 2.205074 CGACAGTGCTTTGTTCTGACT 58.795 47.619 0.00 0.00 33.93 3.41
1480 5870 3.302740 CGACAGTGCTTTGTTCTGACTTC 60.303 47.826 0.00 0.00 33.93 3.01
1481 5871 3.873952 GACAGTGCTTTGTTCTGACTTCT 59.126 43.478 0.00 0.00 33.93 2.85
1503 5893 3.005050 TGAGCCAGCTTGTGAAAATTGAG 59.995 43.478 0.00 0.00 0.00 3.02
1510 5900 3.191371 GCTTGTGAAAATTGAGGATCGGT 59.809 43.478 0.00 0.00 38.61 4.69
1511 5901 4.321230 GCTTGTGAAAATTGAGGATCGGTT 60.321 41.667 0.00 0.00 38.61 4.44
1512 5902 4.764679 TGTGAAAATTGAGGATCGGTTG 57.235 40.909 0.00 0.00 38.61 3.77
1513 5903 3.505680 TGTGAAAATTGAGGATCGGTTGG 59.494 43.478 0.00 0.00 38.61 3.77
1525 5915 4.360405 GGTTGGCCCGGGTGATGT 62.360 66.667 24.63 0.00 0.00 3.06
1531 5921 1.144057 GCCCGGGTGATGTACTGAG 59.856 63.158 24.63 0.00 0.00 3.35
1536 5926 1.001268 CGGGTGATGTACTGAGGATCG 60.001 57.143 0.00 0.00 38.61 3.69
1542 5932 6.183360 GGGTGATGTACTGAGGATCGTATATC 60.183 46.154 0.00 7.72 39.97 1.63
1555 5945 6.884836 AGGATCGTATATCTGCACAGTACATA 59.115 38.462 0.00 0.00 0.00 2.29
1556 5946 6.967767 GGATCGTATATCTGCACAGTACATAC 59.032 42.308 0.00 3.99 0.00 2.39
1560 5950 5.767816 ATATCTGCACAGTACATACGTGA 57.232 39.130 0.00 0.00 34.80 4.35
1561 5951 4.655762 ATCTGCACAGTACATACGTGAT 57.344 40.909 0.00 0.00 34.80 3.06
1562 5952 5.767816 ATCTGCACAGTACATACGTGATA 57.232 39.130 0.00 0.00 34.80 2.15
1563 5953 4.916870 TCTGCACAGTACATACGTGATAC 58.083 43.478 0.00 0.00 34.80 2.24
1596 5986 7.262048 TGTCTTAGTTTGTTCACCAATTTTCC 58.738 34.615 0.00 0.00 31.81 3.13
1598 5990 7.979537 GTCTTAGTTTGTTCACCAATTTTCCTT 59.020 33.333 0.00 0.00 31.81 3.36
1599 5991 8.536175 TCTTAGTTTGTTCACCAATTTTCCTTT 58.464 29.630 0.00 0.00 31.81 3.11
1605 5997 5.660864 TGTTCACCAATTTTCCTTTTCTCCT 59.339 36.000 0.00 0.00 0.00 3.69
1619 6011 0.539669 TCTCCTTCTCTGTCGCCACA 60.540 55.000 0.00 0.00 0.00 4.17
1620 6012 0.318441 CTCCTTCTCTGTCGCCACAA 59.682 55.000 0.00 0.00 29.82 3.33
1632 6024 5.935206 TCTGTCGCCACAATACAATTCTTAA 59.065 36.000 0.00 0.00 29.82 1.85
1634 6026 7.120579 TCTGTCGCCACAATACAATTCTTAATT 59.879 33.333 0.00 0.00 29.82 1.40
1677 6069 3.419915 CGCTCACACATTGATAAGTTGC 58.580 45.455 0.00 0.00 32.17 4.17
1701 6093 8.336806 TGCATTCATTGTTTCAAATTTCACTTC 58.663 29.630 0.00 0.00 0.00 3.01
1702 6094 7.799914 GCATTCATTGTTTCAAATTTCACTTCC 59.200 33.333 0.00 0.00 0.00 3.46
1704 6096 6.800543 TCATTGTTTCAAATTTCACTTCCGA 58.199 32.000 0.00 0.00 0.00 4.55
1731 6123 4.670227 AGTTCGAGCTTAACTGAAATGC 57.330 40.909 13.01 0.00 35.87 3.56
1746 6138 8.814038 AACTGAAATGCCTGAAACTTCTATAT 57.186 30.769 0.00 0.00 0.00 0.86
1749 6141 9.727627 CTGAAATGCCTGAAACTTCTATATTTC 57.272 33.333 0.00 0.00 35.73 2.17
1750 6142 8.686334 TGAAATGCCTGAAACTTCTATATTTCC 58.314 33.333 0.00 0.00 34.52 3.13
1753 6145 5.590259 TGCCTGAAACTTCTATATTTCCAGC 59.410 40.000 0.00 0.00 34.52 4.85
1757 6149 7.340487 CCTGAAACTTCTATATTTCCAGCCTTT 59.660 37.037 0.00 0.00 34.52 3.11
1769 6161 0.469892 CAGCCTTTGGGGTCTTTGGT 60.470 55.000 0.00 0.00 42.03 3.67
1770 6162 0.178961 AGCCTTTGGGGTCTTTGGTC 60.179 55.000 0.00 0.00 39.40 4.02
1771 6163 0.469144 GCCTTTGGGGTCTTTGGTCA 60.469 55.000 0.00 0.00 37.43 4.02
1772 6164 2.032151 GCCTTTGGGGTCTTTGGTCAA 61.032 52.381 0.00 0.00 37.43 3.18
1773 6165 1.963515 CCTTTGGGGTCTTTGGTCAAG 59.036 52.381 0.00 0.00 0.00 3.02
1774 6166 2.666317 CTTTGGGGTCTTTGGTCAAGT 58.334 47.619 0.00 0.00 33.66 3.16
1775 6167 3.435890 CCTTTGGGGTCTTTGGTCAAGTA 60.436 47.826 0.00 0.00 33.66 2.24
1776 6168 3.955524 TTGGGGTCTTTGGTCAAGTAA 57.044 42.857 0.00 0.00 33.66 2.24
1777 6169 4.463050 TTGGGGTCTTTGGTCAAGTAAT 57.537 40.909 0.00 0.00 33.66 1.89
1778 6170 3.761897 TGGGGTCTTTGGTCAAGTAATG 58.238 45.455 0.00 0.00 33.66 1.90
1779 6171 3.139397 TGGGGTCTTTGGTCAAGTAATGT 59.861 43.478 0.00 0.00 33.66 2.71
1780 6172 3.756963 GGGGTCTTTGGTCAAGTAATGTC 59.243 47.826 0.00 0.00 33.66 3.06
1781 6173 4.506802 GGGGTCTTTGGTCAAGTAATGTCT 60.507 45.833 0.00 0.00 33.66 3.41
1782 6174 5.070685 GGGTCTTTGGTCAAGTAATGTCTT 58.929 41.667 0.00 0.00 33.66 3.01
1783 6175 5.181433 GGGTCTTTGGTCAAGTAATGTCTTC 59.819 44.000 0.00 0.00 33.66 2.87
1784 6176 5.763204 GGTCTTTGGTCAAGTAATGTCTTCA 59.237 40.000 0.00 0.00 33.66 3.02
1785 6177 6.293462 GGTCTTTGGTCAAGTAATGTCTTCAC 60.293 42.308 0.00 0.00 33.66 3.18
1786 6178 5.763204 TCTTTGGTCAAGTAATGTCTTCACC 59.237 40.000 0.00 0.00 38.71 4.02
1787 6179 4.974645 TGGTCAAGTAATGTCTTCACCT 57.025 40.909 5.20 0.00 38.95 4.00
1788 6180 5.304686 TGGTCAAGTAATGTCTTCACCTT 57.695 39.130 5.20 0.00 38.95 3.50
1789 6181 5.305585 TGGTCAAGTAATGTCTTCACCTTC 58.694 41.667 5.20 0.00 38.95 3.46
1790 6182 5.071788 TGGTCAAGTAATGTCTTCACCTTCT 59.928 40.000 5.20 0.00 38.95 2.85
1791 6183 5.998363 GGTCAAGTAATGTCTTCACCTTCTT 59.002 40.000 0.00 0.00 36.03 2.52
1792 6184 6.073003 GGTCAAGTAATGTCTTCACCTTCTTG 60.073 42.308 0.00 0.00 36.03 3.02
1793 6185 6.483640 GTCAAGTAATGTCTTCACCTTCTTGT 59.516 38.462 0.00 0.00 33.77 3.16
1794 6186 6.483307 TCAAGTAATGTCTTCACCTTCTTGTG 59.517 38.462 0.00 0.00 37.59 3.33
1795 6187 4.757149 AGTAATGTCTTCACCTTCTTGTGC 59.243 41.667 0.00 0.00 36.17 4.57
1796 6188 3.498774 ATGTCTTCACCTTCTTGTGCT 57.501 42.857 0.00 0.00 36.17 4.40
1797 6189 2.564771 TGTCTTCACCTTCTTGTGCTG 58.435 47.619 0.00 0.00 36.17 4.41
1798 6190 1.265365 GTCTTCACCTTCTTGTGCTGC 59.735 52.381 0.00 0.00 36.17 5.25
1799 6191 1.134128 TCTTCACCTTCTTGTGCTGCA 60.134 47.619 0.00 0.00 36.17 4.41
1800 6192 1.677576 CTTCACCTTCTTGTGCTGCAA 59.322 47.619 2.77 0.00 36.17 4.08
1801 6193 1.024271 TCACCTTCTTGTGCTGCAAC 58.976 50.000 2.77 0.00 36.17 4.17
1802 6194 0.317269 CACCTTCTTGTGCTGCAACG 60.317 55.000 2.77 0.00 32.90 4.10
1803 6195 0.463654 ACCTTCTTGTGCTGCAACGA 60.464 50.000 2.77 0.00 32.90 3.85
1804 6196 0.877071 CCTTCTTGTGCTGCAACGAT 59.123 50.000 2.77 0.00 32.90 3.73
1805 6197 2.076100 CCTTCTTGTGCTGCAACGATA 58.924 47.619 2.77 0.00 32.90 2.92
1806 6198 2.483877 CCTTCTTGTGCTGCAACGATAA 59.516 45.455 2.77 0.00 32.90 1.75
1807 6199 3.482786 CTTCTTGTGCTGCAACGATAAC 58.517 45.455 2.77 0.00 32.90 1.89
1808 6200 2.488952 TCTTGTGCTGCAACGATAACA 58.511 42.857 2.77 0.00 32.90 2.41
1809 6201 3.073678 TCTTGTGCTGCAACGATAACAT 58.926 40.909 2.77 0.00 32.90 2.71
1810 6202 3.501828 TCTTGTGCTGCAACGATAACATT 59.498 39.130 2.77 0.00 32.90 2.71
1811 6203 3.913548 TGTGCTGCAACGATAACATTT 57.086 38.095 2.77 0.00 0.00 2.32
1812 6204 4.235939 TGTGCTGCAACGATAACATTTT 57.764 36.364 2.77 0.00 0.00 1.82
1813 6205 5.363979 TGTGCTGCAACGATAACATTTTA 57.636 34.783 2.77 0.00 0.00 1.52
1814 6206 5.389778 TGTGCTGCAACGATAACATTTTAG 58.610 37.500 2.77 0.00 0.00 1.85
1815 6207 5.180304 TGTGCTGCAACGATAACATTTTAGA 59.820 36.000 2.77 0.00 0.00 2.10
1816 6208 6.083630 GTGCTGCAACGATAACATTTTAGAA 58.916 36.000 2.77 0.00 0.00 2.10
1817 6209 6.032460 GTGCTGCAACGATAACATTTTAGAAC 59.968 38.462 2.77 0.00 0.00 3.01
1818 6210 5.225129 GCTGCAACGATAACATTTTAGAACG 59.775 40.000 0.00 0.00 0.00 3.95
1819 6211 6.230849 TGCAACGATAACATTTTAGAACGT 57.769 33.333 0.00 0.00 31.49 3.99
1820 6212 6.301108 TGCAACGATAACATTTTAGAACGTC 58.699 36.000 0.00 0.00 30.59 4.34
1821 6213 6.146510 TGCAACGATAACATTTTAGAACGTCT 59.853 34.615 0.00 0.00 30.59 4.18
1822 6214 7.013529 GCAACGATAACATTTTAGAACGTCTT 58.986 34.615 0.00 0.00 30.59 3.01
1823 6215 7.006210 GCAACGATAACATTTTAGAACGTCTTG 59.994 37.037 0.00 0.00 30.59 3.02
1824 6216 7.878477 ACGATAACATTTTAGAACGTCTTGA 57.122 32.000 0.00 0.00 0.00 3.02
1825 6217 7.950236 ACGATAACATTTTAGAACGTCTTGAG 58.050 34.615 0.00 0.00 0.00 3.02
1826 6218 7.597743 ACGATAACATTTTAGAACGTCTTGAGT 59.402 33.333 0.00 0.00 0.00 3.41
1827 6219 8.433126 CGATAACATTTTAGAACGTCTTGAGTT 58.567 33.333 0.00 0.00 34.07 3.01
1831 6223 7.573627 ACATTTTAGAACGTCTTGAGTTTAGC 58.426 34.615 0.00 0.00 31.14 3.09
1832 6224 7.441458 ACATTTTAGAACGTCTTGAGTTTAGCT 59.559 33.333 0.00 0.00 31.14 3.32
1833 6225 6.764877 TTTAGAACGTCTTGAGTTTAGCTG 57.235 37.500 0.00 0.00 31.14 4.24
1834 6226 4.323553 AGAACGTCTTGAGTTTAGCTGT 57.676 40.909 0.00 0.00 31.14 4.40
1835 6227 4.694339 AGAACGTCTTGAGTTTAGCTGTT 58.306 39.130 0.00 0.00 31.14 3.16
1836 6228 4.745620 AGAACGTCTTGAGTTTAGCTGTTC 59.254 41.667 0.00 0.00 34.83 3.18
1837 6229 3.050619 ACGTCTTGAGTTTAGCTGTTCG 58.949 45.455 0.00 0.00 0.00 3.95
1838 6230 3.050619 CGTCTTGAGTTTAGCTGTTCGT 58.949 45.455 0.00 0.00 0.00 3.85
1839 6231 3.489785 CGTCTTGAGTTTAGCTGTTCGTT 59.510 43.478 0.00 0.00 0.00 3.85
1840 6232 4.678287 CGTCTTGAGTTTAGCTGTTCGTTA 59.322 41.667 0.00 0.00 0.00 3.18
1841 6233 5.164177 CGTCTTGAGTTTAGCTGTTCGTTAG 60.164 44.000 0.00 0.00 0.00 2.34
1842 6234 5.118817 GTCTTGAGTTTAGCTGTTCGTTAGG 59.881 44.000 0.00 0.00 0.00 2.69
1843 6235 3.921677 TGAGTTTAGCTGTTCGTTAGGG 58.078 45.455 0.00 0.00 0.00 3.53
1844 6236 2.671888 GAGTTTAGCTGTTCGTTAGGGC 59.328 50.000 0.00 0.00 0.00 5.19
1845 6237 1.392510 GTTTAGCTGTTCGTTAGGGCG 59.607 52.381 0.00 0.00 0.00 6.13
1846 6238 0.604578 TTAGCTGTTCGTTAGGGCGT 59.395 50.000 0.00 0.00 0.00 5.68
1847 6239 0.108992 TAGCTGTTCGTTAGGGCGTG 60.109 55.000 0.00 0.00 0.00 5.34
1855 6247 0.799534 CGTTAGGGCGTGTCTAACCG 60.800 60.000 14.37 8.97 41.91 4.44
1857 6249 0.527565 TTAGGGCGTGTCTAACCGAC 59.472 55.000 0.00 0.00 43.14 4.79
1864 6256 1.133790 CGTGTCTAACCGACCCCTTAG 59.866 57.143 0.00 0.00 42.13 2.18
1876 6268 4.039366 CCGACCCCTTAGAAAATAGAGGAG 59.961 50.000 0.00 0.00 0.00 3.69
1899 6291 9.543783 GGAGTAAACCTTAGTGGAGTATATTTG 57.456 37.037 0.00 0.00 39.71 2.32
1900 6292 8.959705 AGTAAACCTTAGTGGAGTATATTTGC 57.040 34.615 0.00 0.00 39.71 3.68
1915 6307 9.736023 GAGTATATTTGCTCCACTAAATTTTGG 57.264 33.333 0.00 0.00 0.00 3.28
1923 6315 2.167662 CACTAAATTTTGGCCGGACCT 58.832 47.619 3.83 0.00 40.22 3.85
1991 6383 5.118664 ACTCATACATTTCGTCGAACACTTG 59.881 40.000 7.29 6.08 0.00 3.16
1992 6384 4.986034 TCATACATTTCGTCGAACACTTGT 59.014 37.500 7.29 11.25 0.00 3.16
2000 6392 2.411031 CGTCGAACACTTGTTATGCACC 60.411 50.000 0.00 0.00 38.56 5.01
2004 6396 2.949177 ACACTTGTTATGCACCTCCA 57.051 45.000 0.00 0.00 0.00 3.86
2005 6397 3.439857 ACACTTGTTATGCACCTCCAT 57.560 42.857 0.00 0.00 0.00 3.41
2006 6398 3.084039 ACACTTGTTATGCACCTCCATG 58.916 45.455 0.00 0.00 0.00 3.66
2009 6401 0.747644 TGTTATGCACCTCCATGGCG 60.748 55.000 6.96 0.00 40.22 5.69
2025 6417 3.129502 CGAGTGGCAGCCATGGTG 61.130 66.667 19.75 11.47 35.28 4.17
2033 6425 4.722700 AGCCATGGTGACCACGCC 62.723 66.667 18.80 5.65 45.91 5.68
2061 6464 0.907230 GCAACTGGAGGAGGAGGAGT 60.907 60.000 0.00 0.00 0.00 3.85
2070 6473 0.392336 GGAGGAGGAGTAGCAGCATG 59.608 60.000 0.00 0.00 40.87 4.06
2097 6500 2.473378 CGACGAGCAGCAGCAAAG 59.527 61.111 3.17 0.00 45.49 2.77
2098 6501 2.866028 GACGAGCAGCAGCAAAGG 59.134 61.111 3.17 0.00 45.49 3.11
2099 6502 3.319926 GACGAGCAGCAGCAAAGGC 62.320 63.158 3.17 0.00 45.49 4.35
2100 6503 3.359523 CGAGCAGCAGCAAAGGCA 61.360 61.111 3.17 0.00 45.49 4.75
2101 6504 2.257676 GAGCAGCAGCAAAGGCAC 59.742 61.111 3.17 0.00 45.49 5.01
2102 6505 3.606065 GAGCAGCAGCAAAGGCACG 62.606 63.158 3.17 0.00 45.49 5.34
2104 6507 3.968568 CAGCAGCAAAGGCACGCA 61.969 61.111 0.00 0.00 44.61 5.24
2107 6510 2.723746 CAGCAAAGGCACGCAACT 59.276 55.556 0.00 0.00 44.61 3.16
2108 6511 1.370900 CAGCAAAGGCACGCAACTC 60.371 57.895 0.00 0.00 44.61 3.01
2109 6512 2.427410 GCAAAGGCACGCAACTCG 60.427 61.111 0.00 0.00 45.38 4.18
2110 6513 2.252260 CAAAGGCACGCAACTCGG 59.748 61.111 0.00 0.00 43.86 4.63
2111 6514 2.110213 AAAGGCACGCAACTCGGA 59.890 55.556 0.00 0.00 43.86 4.55
2112 6515 1.961277 AAAGGCACGCAACTCGGAG 60.961 57.895 2.83 2.83 43.86 4.63
2114 6517 4.373116 GGCACGCAACTCGGAGGA 62.373 66.667 10.23 0.00 43.86 3.71
2119 6554 2.896443 GCAACTCGGAGGAGGAGG 59.104 66.667 10.23 0.00 44.93 4.30
2127 6562 3.535962 GAGGAGGAGGAGCAGCGG 61.536 72.222 0.00 0.00 0.00 5.52
2150 6585 2.740055 AGTAGCAGCAGCACGCAC 60.740 61.111 3.17 5.71 46.13 5.34
2187 6622 2.624316 TACGTAGTAGCAGCACACAC 57.376 50.000 0.00 0.00 45.11 3.82
2188 6623 0.038526 ACGTAGTAGCAGCACACACC 60.039 55.000 0.00 0.00 41.94 4.16
2190 6625 0.736325 GTAGTAGCAGCACACACCGG 60.736 60.000 0.00 0.00 0.00 5.28
2191 6626 2.501223 TAGTAGCAGCACACACCGGC 62.501 60.000 0.00 0.00 0.00 6.13
2199 6634 3.931247 ACACACCGGCGGCAAGTA 61.931 61.111 28.71 0.00 0.00 2.24
2200 6635 3.118454 CACACCGGCGGCAAGTAG 61.118 66.667 28.71 11.54 0.00 2.57
2210 6645 2.173382 GCAAGTAGCGGCAACACG 59.827 61.111 1.45 0.00 0.00 4.49
2252 6687 2.411504 GGCAACACACACCAACGGT 61.412 57.895 0.00 0.00 35.62 4.83
2271 6706 2.484203 GCAAGCAGCAGCAGTAGC 59.516 61.111 3.17 0.00 45.49 3.58
2282 6717 1.208614 GCAGTAGCAGCAACAGCAC 59.791 57.895 0.00 0.00 41.58 4.40
2290 6725 4.629115 GCAACAGCACACACCGGC 62.629 66.667 0.00 0.00 0.00 6.13
2291 6726 4.312231 CAACAGCACACACCGGCG 62.312 66.667 0.00 0.00 34.54 6.46
2329 6764 3.191539 GCAGTAGCGAGGCACAGC 61.192 66.667 0.00 0.00 0.00 4.40
2330 6765 2.262603 CAGTAGCGAGGCACAGCA 59.737 61.111 0.00 0.00 35.48 4.41
2331 6766 1.808799 CAGTAGCGAGGCACAGCAG 60.809 63.158 0.00 0.00 35.48 4.24
2332 6767 3.191539 GTAGCGAGGCACAGCAGC 61.192 66.667 0.00 0.00 35.48 5.25
2333 6768 3.694538 TAGCGAGGCACAGCAGCA 61.695 61.111 0.00 0.00 35.83 4.41
2334 6769 3.654173 TAGCGAGGCACAGCAGCAG 62.654 63.158 0.00 0.00 35.83 4.24
2337 6772 3.432588 GAGGCACAGCAGCAGCAG 61.433 66.667 3.17 0.00 45.49 4.24
2340 6775 3.973516 GCACAGCAGCAGCAGCAA 61.974 61.111 12.92 0.00 45.49 3.91
2341 6776 2.050351 CACAGCAGCAGCAGCAAC 60.050 61.111 12.92 0.00 45.49 4.17
2342 6777 2.517638 ACAGCAGCAGCAGCAACA 60.518 55.556 12.92 0.00 45.49 3.33
2343 6778 1.901948 ACAGCAGCAGCAGCAACAT 60.902 52.632 12.92 0.00 45.49 2.71
2344 6779 1.289066 CAGCAGCAGCAGCAACATT 59.711 52.632 12.92 0.00 45.49 2.71
2345 6780 0.319555 CAGCAGCAGCAGCAACATTT 60.320 50.000 12.92 0.00 45.49 2.32
2346 6781 1.068125 CAGCAGCAGCAGCAACATTTA 60.068 47.619 12.92 0.00 45.49 1.40
2347 6782 1.201647 AGCAGCAGCAGCAACATTTAG 59.798 47.619 12.92 0.00 45.49 1.85
2358 6793 1.395608 CAACATTTAGTGGCCGTACCG 59.604 52.381 0.00 0.00 43.94 4.02
2376 6811 1.450531 CGGTAGTAGTACGGGCAGGG 61.451 65.000 7.27 0.00 0.00 4.45
2377 6812 1.111715 GGTAGTAGTACGGGCAGGGG 61.112 65.000 1.63 0.00 0.00 4.79
2379 6814 0.336048 TAGTAGTACGGGCAGGGGTT 59.664 55.000 0.00 0.00 0.00 4.11
2404 6839 1.153005 GAGGCCATGGGAGCTTCAG 60.153 63.158 15.13 0.00 36.43 3.02
2406 6841 2.679716 GCCATGGGAGCTTCAGGT 59.320 61.111 15.13 0.00 0.00 4.00
2439 6881 1.063806 CGAGGTCTTTGCGTGAAGAG 58.936 55.000 3.34 0.00 36.39 2.85
2451 6893 7.817478 TCTTTGCGTGAAGAGAAATTATACTCA 59.183 33.333 0.00 0.00 35.83 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.548057 GCGTCATCTGTTTTGGAACTCA 59.452 45.455 0.00 0.00 36.70 3.41
4 5 2.851195 AGCGTCATCTGTTTTGGAACT 58.149 42.857 0.00 0.00 36.70 3.01
5 6 3.626028 AAGCGTCATCTGTTTTGGAAC 57.374 42.857 0.00 0.00 36.29 3.62
8 9 4.213270 TGAAGTAAGCGTCATCTGTTTTGG 59.787 41.667 0.00 0.00 0.00 3.28
9 10 5.342806 TGAAGTAAGCGTCATCTGTTTTG 57.657 39.130 0.00 0.00 0.00 2.44
11 12 6.371809 TTTTGAAGTAAGCGTCATCTGTTT 57.628 33.333 0.00 0.00 33.42 2.83
12 13 6.183360 TGTTTTTGAAGTAAGCGTCATCTGTT 60.183 34.615 0.00 0.00 33.42 3.16
14 15 5.747565 TGTTTTTGAAGTAAGCGTCATCTG 58.252 37.500 0.00 0.00 33.42 2.90
15 16 6.371809 TTGTTTTTGAAGTAAGCGTCATCT 57.628 33.333 0.00 0.00 33.42 2.90
16 17 7.444558 TTTTGTTTTTGAAGTAAGCGTCATC 57.555 32.000 0.00 0.00 33.42 2.92
18 19 6.641314 TGTTTTTGTTTTTGAAGTAAGCGTCA 59.359 30.769 0.00 0.00 0.00 4.35
24 25 8.855279 CGTCATCTGTTTTTGTTTTTGAAGTAA 58.145 29.630 0.00 0.00 0.00 2.24
25 26 7.008810 GCGTCATCTGTTTTTGTTTTTGAAGTA 59.991 33.333 0.00 0.00 0.00 2.24
26 27 6.183360 GCGTCATCTGTTTTTGTTTTTGAAGT 60.183 34.615 0.00 0.00 0.00 3.01
27 28 6.034898 AGCGTCATCTGTTTTTGTTTTTGAAG 59.965 34.615 0.00 0.00 0.00 3.02
28 29 5.866633 AGCGTCATCTGTTTTTGTTTTTGAA 59.133 32.000 0.00 0.00 0.00 2.69
29 30 5.406649 AGCGTCATCTGTTTTTGTTTTTGA 58.593 33.333 0.00 0.00 0.00 2.69
30 31 5.701029 AGCGTCATCTGTTTTTGTTTTTG 57.299 34.783 0.00 0.00 0.00 2.44
32 33 6.809196 TGTAAAGCGTCATCTGTTTTTGTTTT 59.191 30.769 0.00 0.00 0.00 2.43
33 34 6.326375 TGTAAAGCGTCATCTGTTTTTGTTT 58.674 32.000 0.00 0.00 0.00 2.83
35 36 5.493133 TGTAAAGCGTCATCTGTTTTTGT 57.507 34.783 0.00 0.00 0.00 2.83
36 37 5.399301 CCTTGTAAAGCGTCATCTGTTTTTG 59.601 40.000 0.00 0.00 44.44 2.44
38 39 4.023193 CCCTTGTAAAGCGTCATCTGTTTT 60.023 41.667 0.00 0.00 44.44 2.43
39 40 3.502211 CCCTTGTAAAGCGTCATCTGTTT 59.498 43.478 0.00 0.00 44.44 2.83
41 42 2.038557 ACCCTTGTAAAGCGTCATCTGT 59.961 45.455 0.00 0.00 44.44 3.41
93 4237 9.157104 CTCCTCTTAGAAGAAGAACAATTAACC 57.843 37.037 0.00 0.00 34.03 2.85
172 4321 7.329471 CCGACCATATGTAGTGATTTACATCAG 59.671 40.741 1.24 0.00 41.92 2.90
184 4333 5.396485 TGTATTACCCCGACCATATGTAGT 58.604 41.667 1.24 0.00 0.00 2.73
186 4335 6.938698 AATGTATTACCCCGACCATATGTA 57.061 37.500 1.24 0.00 0.00 2.29
188 4337 7.162761 TGTAAATGTATTACCCCGACCATATG 58.837 38.462 0.00 0.00 0.00 1.78
189 4338 7.319052 TGTAAATGTATTACCCCGACCATAT 57.681 36.000 0.00 0.00 0.00 1.78
190 4339 6.744175 TGTAAATGTATTACCCCGACCATA 57.256 37.500 0.00 0.00 0.00 2.74
192 4341 5.432680 TTGTAAATGTATTACCCCGACCA 57.567 39.130 0.00 0.00 0.00 4.02
193 4342 6.756299 TTTTGTAAATGTATTACCCCGACC 57.244 37.500 0.00 0.00 0.00 4.79
244 4393 8.014322 TCTTGTTACAATTCGATCTGTTGTAC 57.986 34.615 0.00 0.00 37.86 2.90
248 4397 8.830580 CCATATCTTGTTACAATTCGATCTGTT 58.169 33.333 0.00 0.00 0.00 3.16
263 4412 9.996554 TCGTATGTGATAATTCCATATCTTGTT 57.003 29.630 0.00 0.00 34.14 2.83
270 4419 9.996554 AACTGAATCGTATGTGATAATTCCATA 57.003 29.630 0.00 0.00 0.00 2.74
271 4420 8.777413 CAACTGAATCGTATGTGATAATTCCAT 58.223 33.333 0.00 0.00 0.00 3.41
272 4421 7.226523 CCAACTGAATCGTATGTGATAATTCCA 59.773 37.037 0.00 0.00 0.00 3.53
273 4422 7.576236 CCAACTGAATCGTATGTGATAATTCC 58.424 38.462 0.00 0.00 0.00 3.01
274 4423 7.041780 AGCCAACTGAATCGTATGTGATAATTC 60.042 37.037 0.00 0.00 0.00 2.17
275 4424 6.767902 AGCCAACTGAATCGTATGTGATAATT 59.232 34.615 0.00 0.00 0.00 1.40
280 4429 3.195610 AGAGCCAACTGAATCGTATGTGA 59.804 43.478 0.00 0.00 0.00 3.58
284 4433 3.738281 CGGAAGAGCCAACTGAATCGTAT 60.738 47.826 0.00 0.00 35.94 3.06
288 4437 1.066143 TCCGGAAGAGCCAACTGAATC 60.066 52.381 0.00 0.00 35.94 2.52
290 4439 0.321671 CTCCGGAAGAGCCAACTGAA 59.678 55.000 5.23 0.00 35.31 3.02
292 4441 4.606071 CTCCGGAAGAGCCAACTG 57.394 61.111 5.23 0.00 35.31 3.16
299 4448 0.035458 AAGGTGTTGCTCCGGAAGAG 59.965 55.000 5.23 0.00 46.29 2.85
324 4474 4.062991 GTGACACAAGGACGTTTATTCCT 58.937 43.478 0.00 0.00 46.13 3.36
334 4484 1.663702 CGGACGGTGACACAAGGAC 60.664 63.158 8.08 0.00 0.00 3.85
337 4487 2.357327 TAATCGGACGGTGACACAAG 57.643 50.000 8.08 3.34 0.00 3.16
339 4489 2.816204 TTTAATCGGACGGTGACACA 57.184 45.000 8.08 0.00 0.00 3.72
340 4490 3.662454 CGTTTTTAATCGGACGGTGACAC 60.662 47.826 0.00 0.00 32.29 3.67
342 4492 2.730928 TCGTTTTTAATCGGACGGTGAC 59.269 45.455 0.00 0.00 36.27 3.67
343 4493 2.730928 GTCGTTTTTAATCGGACGGTGA 59.269 45.455 0.00 0.00 36.27 4.02
344 4494 2.733026 AGTCGTTTTTAATCGGACGGTG 59.267 45.455 0.00 0.00 36.27 4.94
345 4495 2.733026 CAGTCGTTTTTAATCGGACGGT 59.267 45.455 0.00 0.00 36.27 4.83
347 4497 3.916172 TCTCAGTCGTTTTTAATCGGACG 59.084 43.478 0.00 0.00 36.89 4.79
354 4515 7.562454 AAATCCTTGTCTCAGTCGTTTTTAA 57.438 32.000 0.00 0.00 0.00 1.52
355 4516 7.281324 TGAAAATCCTTGTCTCAGTCGTTTTTA 59.719 33.333 0.00 0.00 0.00 1.52
365 4526 9.383519 GTAACTATGATGAAAATCCTTGTCTCA 57.616 33.333 0.00 0.00 0.00 3.27
366 4527 9.606631 AGTAACTATGATGAAAATCCTTGTCTC 57.393 33.333 0.00 0.00 0.00 3.36
393 4556 2.821969 GCATTCAGTGGTTGGTCTCAAT 59.178 45.455 0.00 0.00 35.10 2.57
394 4557 2.229792 GCATTCAGTGGTTGGTCTCAA 58.770 47.619 0.00 0.00 0.00 3.02
395 4558 1.545428 GGCATTCAGTGGTTGGTCTCA 60.545 52.381 0.00 0.00 0.00 3.27
416 4579 1.327690 TGTCTCCCTACCGATGTGCC 61.328 60.000 0.00 0.00 0.00 5.01
456 4619 1.966451 AGCAGTGGCCAACTTACGC 60.966 57.895 7.24 7.47 42.56 4.42
459 4622 0.606401 GCTCAGCAGTGGCCAACTTA 60.606 55.000 7.24 0.00 42.56 2.24
469 4632 0.610232 GATTGGTTGGGCTCAGCAGT 60.610 55.000 1.81 0.00 0.00 4.40
480 4646 2.414559 GCTTCATGTCCGTGATTGGTTG 60.415 50.000 0.00 0.00 0.00 3.77
490 4659 2.840974 AAGAACCGCTTCATGTCCG 58.159 52.632 0.00 0.00 28.17 4.79
538 4744 7.227116 TGTGTTGTGTAACTAGTTTTATGACCC 59.773 37.037 14.49 0.00 38.04 4.46
541 4747 9.991388 GTTTGTGTTGTGTAACTAGTTTTATGA 57.009 29.630 14.49 0.00 38.04 2.15
555 4761 8.825745 GGAATCAAATAAATGTTTGTGTTGTGT 58.174 29.630 3.13 0.00 39.50 3.72
595 4807 6.042777 TGATCGCTACCTTTTGTATGAGAAG 58.957 40.000 0.00 0.00 0.00 2.85
674 4900 9.423964 TGGTGAGTTGTTGGTATATGTACTATA 57.576 33.333 0.00 0.00 0.00 1.31
676 4902 7.549839 GTGGTGAGTTGTTGGTATATGTACTA 58.450 38.462 0.00 0.00 0.00 1.82
678 4904 5.290158 CGTGGTGAGTTGTTGGTATATGTAC 59.710 44.000 0.00 0.00 0.00 2.90
679 4905 5.412640 CGTGGTGAGTTGTTGGTATATGTA 58.587 41.667 0.00 0.00 0.00 2.29
680 4906 4.250464 CGTGGTGAGTTGTTGGTATATGT 58.750 43.478 0.00 0.00 0.00 2.29
681 4907 3.063452 GCGTGGTGAGTTGTTGGTATATG 59.937 47.826 0.00 0.00 0.00 1.78
682 4908 3.267483 GCGTGGTGAGTTGTTGGTATAT 58.733 45.455 0.00 0.00 0.00 0.86
683 4909 2.037381 TGCGTGGTGAGTTGTTGGTATA 59.963 45.455 0.00 0.00 0.00 1.47
684 4910 1.202710 TGCGTGGTGAGTTGTTGGTAT 60.203 47.619 0.00 0.00 0.00 2.73
685 4911 0.178301 TGCGTGGTGAGTTGTTGGTA 59.822 50.000 0.00 0.00 0.00 3.25
686 4912 1.078072 TGCGTGGTGAGTTGTTGGT 60.078 52.632 0.00 0.00 0.00 3.67
688 4914 1.011242 CGTGCGTGGTGAGTTGTTG 60.011 57.895 0.00 0.00 0.00 3.33
689 4915 0.741574 TTCGTGCGTGGTGAGTTGTT 60.742 50.000 0.00 0.00 0.00 2.83
690 4916 0.741574 TTTCGTGCGTGGTGAGTTGT 60.742 50.000 0.00 0.00 0.00 3.32
691 4917 0.315869 GTTTCGTGCGTGGTGAGTTG 60.316 55.000 0.00 0.00 0.00 3.16
692 4918 0.461339 AGTTTCGTGCGTGGTGAGTT 60.461 50.000 0.00 0.00 0.00 3.01
693 4919 0.874607 GAGTTTCGTGCGTGGTGAGT 60.875 55.000 0.00 0.00 0.00 3.41
694 4920 0.874175 TGAGTTTCGTGCGTGGTGAG 60.874 55.000 0.00 0.00 0.00 3.51
695 4921 1.142097 TGAGTTTCGTGCGTGGTGA 59.858 52.632 0.00 0.00 0.00 4.02
696 4922 1.275657 GTGAGTTTCGTGCGTGGTG 59.724 57.895 0.00 0.00 0.00 4.17
697 4923 1.885850 GGTGAGTTTCGTGCGTGGT 60.886 57.895 0.00 0.00 0.00 4.16
698 4924 2.935955 GGTGAGTTTCGTGCGTGG 59.064 61.111 0.00 0.00 0.00 4.94
835 5086 1.264288 GAGCCGAACTTGGACTTGTTG 59.736 52.381 0.00 0.00 0.00 3.33
874 5128 0.179037 CGTGGTGAGGGCATGATGAT 60.179 55.000 0.00 0.00 0.00 2.45
875 5129 1.221566 CGTGGTGAGGGCATGATGA 59.778 57.895 0.00 0.00 0.00 2.92
876 5130 1.820906 CCGTGGTGAGGGCATGATG 60.821 63.158 0.00 0.00 0.00 3.07
877 5131 2.591753 CCGTGGTGAGGGCATGAT 59.408 61.111 0.00 0.00 0.00 2.45
946 5212 6.974965 ACTTGTCTTTGGAAGCAGATTTAAG 58.025 36.000 0.00 0.00 0.00 1.85
954 5220 4.415881 TGTCTACTTGTCTTTGGAAGCA 57.584 40.909 0.00 0.00 0.00 3.91
959 5225 4.684703 CGTAGGTTGTCTACTTGTCTTTGG 59.315 45.833 0.00 0.00 44.66 3.28
969 5235 3.251729 TGTGTCTGTCGTAGGTTGTCTAC 59.748 47.826 0.00 0.00 43.68 2.59
970 5236 3.251729 GTGTGTCTGTCGTAGGTTGTCTA 59.748 47.826 0.00 0.00 0.00 2.59
979 5264 1.369568 CGTGCGTGTGTCTGTCGTA 60.370 57.895 0.00 0.00 0.00 3.43
980 5265 2.654085 CGTGCGTGTGTCTGTCGT 60.654 61.111 0.00 0.00 0.00 4.34
981 5266 4.046998 GCGTGCGTGTGTCTGTCG 62.047 66.667 0.00 0.00 0.00 4.35
982 5267 3.702555 GGCGTGCGTGTGTCTGTC 61.703 66.667 0.00 0.00 0.00 3.51
986 5271 3.295228 GACATGGCGTGCGTGTGTC 62.295 63.158 6.62 6.67 33.32 3.67
1008 5319 1.663702 CTTCGGCTTGGACGACGTT 60.664 57.895 0.13 0.00 45.25 3.99
1230 5589 4.662961 TCTGGTGGCAGCGTCGTG 62.663 66.667 12.58 0.11 0.00 4.35
1288 5647 1.137513 GTGAGAACCAAAGACGTCGG 58.862 55.000 10.46 8.21 0.00 4.79
1335 5712 0.601046 CCGGATGATGATCACCACCG 60.601 60.000 21.77 21.77 39.11 4.94
1336 5713 0.758734 TCCGGATGATGATCACCACC 59.241 55.000 0.00 1.26 0.00 4.61
1337 5714 2.213499 GTTCCGGATGATGATCACCAC 58.787 52.381 4.15 0.00 0.00 4.16
1457 5846 0.937304 TCAGAACAAAGCACTGTCGC 59.063 50.000 0.00 0.00 33.93 5.19
1474 5864 0.761187 ACAAGCTGGCTCAGAAGTCA 59.239 50.000 6.40 0.00 35.36 3.41
1475 5865 1.155042 CACAAGCTGGCTCAGAAGTC 58.845 55.000 6.40 0.00 32.44 3.01
1476 5866 0.761187 TCACAAGCTGGCTCAGAAGT 59.239 50.000 6.40 0.00 32.44 3.01
1477 5867 1.888215 TTCACAAGCTGGCTCAGAAG 58.112 50.000 6.40 0.00 32.44 2.85
1478 5868 2.346766 TTTCACAAGCTGGCTCAGAA 57.653 45.000 6.40 0.00 32.44 3.02
1480 5870 3.005050 TCAATTTTCACAAGCTGGCTCAG 59.995 43.478 0.00 0.00 34.12 3.35
1481 5871 2.957680 TCAATTTTCACAAGCTGGCTCA 59.042 40.909 0.00 0.00 0.00 4.26
1510 5900 1.921346 AGTACATCACCCGGGCCAA 60.921 57.895 24.08 6.43 0.00 4.52
1511 5901 2.285069 AGTACATCACCCGGGCCA 60.285 61.111 24.08 7.61 0.00 5.36
1512 5902 2.189521 CAGTACATCACCCGGGCC 59.810 66.667 24.08 0.00 0.00 5.80
1513 5903 1.144057 CTCAGTACATCACCCGGGC 59.856 63.158 24.08 1.13 0.00 6.13
1525 5915 5.313712 TGTGCAGATATACGATCCTCAGTA 58.686 41.667 0.00 0.00 0.00 2.74
1531 5921 5.372547 TGTACTGTGCAGATATACGATCC 57.627 43.478 6.17 0.00 0.00 3.36
1536 5926 6.665465 TCACGTATGTACTGTGCAGATATAC 58.335 40.000 6.17 9.59 33.75 1.47
1542 5932 3.724257 CGTATCACGTATGTACTGTGCAG 59.276 47.826 4.63 0.00 36.74 4.41
1560 5950 9.263538 TGAACAAACTAAGACAATTACACGTAT 57.736 29.630 0.00 0.00 0.00 3.06
1561 5951 8.542132 GTGAACAAACTAAGACAATTACACGTA 58.458 33.333 0.00 0.00 0.00 3.57
1562 5952 7.404203 GTGAACAAACTAAGACAATTACACGT 58.596 34.615 0.00 0.00 0.00 4.49
1563 5953 6.849305 GGTGAACAAACTAAGACAATTACACG 59.151 38.462 0.00 0.00 0.00 4.49
1564 5954 7.699566 TGGTGAACAAACTAAGACAATTACAC 58.300 34.615 0.00 0.00 0.00 2.90
1596 5986 2.289072 TGGCGACAGAGAAGGAGAAAAG 60.289 50.000 0.00 0.00 35.01 2.27
1598 5990 1.000955 GTGGCGACAGAGAAGGAGAAA 59.999 52.381 0.00 0.00 44.46 2.52
1599 5991 0.603569 GTGGCGACAGAGAAGGAGAA 59.396 55.000 0.00 0.00 44.46 2.87
1605 5997 3.394674 TTGTATTGTGGCGACAGAGAA 57.605 42.857 0.70 0.00 44.46 2.87
1634 6026 9.674824 GAGCGCTAAACTCTAATTAACATAGTA 57.325 33.333 11.50 0.00 0.00 1.82
1659 6051 6.572167 TGAATGCAACTTATCAATGTGTGA 57.428 33.333 0.00 0.00 41.67 3.58
1677 6069 8.005466 CGGAAGTGAAATTTGAAACAATGAATG 58.995 33.333 0.00 0.00 0.00 2.67
1709 6101 4.083271 GGCATTTCAGTTAAGCTCGAACTT 60.083 41.667 10.49 6.30 34.90 2.66
1711 6103 3.437049 AGGCATTTCAGTTAAGCTCGAAC 59.563 43.478 3.75 3.75 0.00 3.95
1719 6111 6.959639 AGAAGTTTCAGGCATTTCAGTTAA 57.040 33.333 0.00 0.00 0.00 2.01
1731 6123 6.360618 AGGCTGGAAATATAGAAGTTTCAGG 58.639 40.000 0.00 0.00 36.34 3.86
1749 6141 1.187567 CCAAAGACCCCAAAGGCTGG 61.188 60.000 0.00 0.00 45.97 4.85
1750 6142 0.469892 ACCAAAGACCCCAAAGGCTG 60.470 55.000 0.00 0.00 40.58 4.85
1753 6145 1.963515 CTTGACCAAAGACCCCAAAGG 59.036 52.381 0.00 0.00 38.24 3.11
1757 6149 3.139397 ACATTACTTGACCAAAGACCCCA 59.861 43.478 0.00 0.00 39.38 4.96
1760 6152 5.763204 TGAAGACATTACTTGACCAAAGACC 59.237 40.000 0.00 0.00 39.38 3.85
1769 6161 6.483307 CACAAGAAGGTGAAGACATTACTTGA 59.517 38.462 0.00 0.00 41.32 3.02
1770 6162 6.662616 CACAAGAAGGTGAAGACATTACTTG 58.337 40.000 0.00 0.00 41.32 3.16
1771 6163 5.239525 GCACAAGAAGGTGAAGACATTACTT 59.760 40.000 0.00 0.00 41.32 2.24
1772 6164 4.757149 GCACAAGAAGGTGAAGACATTACT 59.243 41.667 0.00 0.00 41.32 2.24
1773 6165 4.757149 AGCACAAGAAGGTGAAGACATTAC 59.243 41.667 0.00 0.00 41.32 1.89
1774 6166 4.756642 CAGCACAAGAAGGTGAAGACATTA 59.243 41.667 0.00 0.00 41.32 1.90
1775 6167 3.567164 CAGCACAAGAAGGTGAAGACATT 59.433 43.478 0.00 0.00 41.32 2.71
1776 6168 3.144506 CAGCACAAGAAGGTGAAGACAT 58.855 45.455 0.00 0.00 41.32 3.06
1777 6169 2.564771 CAGCACAAGAAGGTGAAGACA 58.435 47.619 0.00 0.00 41.32 3.41
1778 6170 1.265365 GCAGCACAAGAAGGTGAAGAC 59.735 52.381 0.00 0.00 41.32 3.01
1779 6171 1.134128 TGCAGCACAAGAAGGTGAAGA 60.134 47.619 0.00 0.00 41.32 2.87
1780 6172 1.311859 TGCAGCACAAGAAGGTGAAG 58.688 50.000 0.00 0.00 41.32 3.02
1781 6173 1.405105 GTTGCAGCACAAGAAGGTGAA 59.595 47.619 0.00 0.00 41.32 3.18
1782 6174 1.024271 GTTGCAGCACAAGAAGGTGA 58.976 50.000 0.00 0.00 41.32 4.02
1783 6175 0.317269 CGTTGCAGCACAAGAAGGTG 60.317 55.000 0.00 0.00 39.50 4.00
1784 6176 0.463654 TCGTTGCAGCACAAGAAGGT 60.464 50.000 0.00 0.00 39.50 3.50
1785 6177 0.877071 ATCGTTGCAGCACAAGAAGG 59.123 50.000 0.00 0.00 39.50 3.46
1786 6178 3.058983 TGTTATCGTTGCAGCACAAGAAG 60.059 43.478 0.00 0.00 39.50 2.85
1787 6179 2.875317 TGTTATCGTTGCAGCACAAGAA 59.125 40.909 0.00 0.00 39.50 2.52
1788 6180 2.488952 TGTTATCGTTGCAGCACAAGA 58.511 42.857 0.00 0.00 39.50 3.02
1789 6181 2.967459 TGTTATCGTTGCAGCACAAG 57.033 45.000 0.00 0.00 39.50 3.16
1790 6182 3.913548 AATGTTATCGTTGCAGCACAA 57.086 38.095 0.00 0.00 35.33 3.33
1791 6183 3.913548 AAATGTTATCGTTGCAGCACA 57.086 38.095 0.00 0.00 0.00 4.57
1792 6184 5.627172 TCTAAAATGTTATCGTTGCAGCAC 58.373 37.500 0.00 0.00 0.00 4.40
1793 6185 5.871465 TCTAAAATGTTATCGTTGCAGCA 57.129 34.783 0.24 0.00 0.00 4.41
1794 6186 5.225129 CGTTCTAAAATGTTATCGTTGCAGC 59.775 40.000 0.00 0.00 0.00 5.25
1795 6187 6.304126 ACGTTCTAAAATGTTATCGTTGCAG 58.696 36.000 0.00 0.00 30.21 4.41
1796 6188 6.146510 AGACGTTCTAAAATGTTATCGTTGCA 59.853 34.615 0.00 0.00 34.73 4.08
1797 6189 6.531439 AGACGTTCTAAAATGTTATCGTTGC 58.469 36.000 0.00 0.00 34.73 4.17
1798 6190 8.218441 TCAAGACGTTCTAAAATGTTATCGTTG 58.782 33.333 0.00 0.00 34.73 4.10
1799 6191 8.301730 TCAAGACGTTCTAAAATGTTATCGTT 57.698 30.769 0.00 0.00 34.73 3.85
1800 6192 7.597743 ACTCAAGACGTTCTAAAATGTTATCGT 59.402 33.333 0.00 0.00 34.73 3.73
1801 6193 7.950236 ACTCAAGACGTTCTAAAATGTTATCG 58.050 34.615 0.00 0.00 34.73 2.92
1805 6197 8.068380 GCTAAACTCAAGACGTTCTAAAATGTT 58.932 33.333 0.00 0.00 34.73 2.71
1806 6198 7.441458 AGCTAAACTCAAGACGTTCTAAAATGT 59.559 33.333 0.00 0.00 37.33 2.71
1807 6199 7.742089 CAGCTAAACTCAAGACGTTCTAAAATG 59.258 37.037 0.00 0.00 0.00 2.32
1808 6200 7.441458 ACAGCTAAACTCAAGACGTTCTAAAAT 59.559 33.333 0.00 0.00 0.00 1.82
1809 6201 6.759827 ACAGCTAAACTCAAGACGTTCTAAAA 59.240 34.615 0.00 0.00 0.00 1.52
1810 6202 6.278363 ACAGCTAAACTCAAGACGTTCTAAA 58.722 36.000 0.00 0.00 0.00 1.85
1811 6203 5.839621 ACAGCTAAACTCAAGACGTTCTAA 58.160 37.500 0.00 0.00 0.00 2.10
1812 6204 5.449107 ACAGCTAAACTCAAGACGTTCTA 57.551 39.130 0.00 0.00 0.00 2.10
1813 6205 4.323553 ACAGCTAAACTCAAGACGTTCT 57.676 40.909 0.00 0.00 0.00 3.01
1814 6206 4.375105 CGAACAGCTAAACTCAAGACGTTC 60.375 45.833 0.00 0.00 0.00 3.95
1815 6207 3.489785 CGAACAGCTAAACTCAAGACGTT 59.510 43.478 0.00 0.00 0.00 3.99
1816 6208 3.050619 CGAACAGCTAAACTCAAGACGT 58.949 45.455 0.00 0.00 0.00 4.34
1817 6209 3.050619 ACGAACAGCTAAACTCAAGACG 58.949 45.455 0.00 0.00 0.00 4.18
1818 6210 5.118817 CCTAACGAACAGCTAAACTCAAGAC 59.881 44.000 0.00 0.00 0.00 3.01
1819 6211 5.227908 CCTAACGAACAGCTAAACTCAAGA 58.772 41.667 0.00 0.00 0.00 3.02
1820 6212 4.389077 CCCTAACGAACAGCTAAACTCAAG 59.611 45.833 0.00 0.00 0.00 3.02
1821 6213 4.312443 CCCTAACGAACAGCTAAACTCAA 58.688 43.478 0.00 0.00 0.00 3.02
1822 6214 3.863400 GCCCTAACGAACAGCTAAACTCA 60.863 47.826 0.00 0.00 0.00 3.41
1823 6215 2.671888 GCCCTAACGAACAGCTAAACTC 59.328 50.000 0.00 0.00 0.00 3.01
1824 6216 2.696506 GCCCTAACGAACAGCTAAACT 58.303 47.619 0.00 0.00 0.00 2.66
1825 6217 1.392510 CGCCCTAACGAACAGCTAAAC 59.607 52.381 0.00 0.00 34.06 2.01
1826 6218 1.001181 ACGCCCTAACGAACAGCTAAA 59.999 47.619 0.00 0.00 36.70 1.85
1827 6219 0.604578 ACGCCCTAACGAACAGCTAA 59.395 50.000 0.00 0.00 36.70 3.09
1828 6220 0.108992 CACGCCCTAACGAACAGCTA 60.109 55.000 0.00 0.00 36.70 3.32
1829 6221 1.374252 CACGCCCTAACGAACAGCT 60.374 57.895 0.00 0.00 36.70 4.24
1830 6222 1.623973 GACACGCCCTAACGAACAGC 61.624 60.000 0.00 0.00 36.70 4.40
1831 6223 0.038526 AGACACGCCCTAACGAACAG 60.039 55.000 0.00 0.00 36.70 3.16
1832 6224 1.246649 TAGACACGCCCTAACGAACA 58.753 50.000 0.00 0.00 36.70 3.18
1833 6225 1.988467 GTTAGACACGCCCTAACGAAC 59.012 52.381 0.00 0.00 37.36 3.95
1834 6226 1.067635 GGTTAGACACGCCCTAACGAA 60.068 52.381 12.80 0.00 44.09 3.85
1835 6227 0.527565 GGTTAGACACGCCCTAACGA 59.472 55.000 12.80 0.00 44.09 3.85
1836 6228 0.799534 CGGTTAGACACGCCCTAACG 60.800 60.000 12.80 7.40 44.09 3.18
1837 6229 0.527565 TCGGTTAGACACGCCCTAAC 59.472 55.000 11.48 11.48 43.04 2.34
1838 6230 2.959967 TCGGTTAGACACGCCCTAA 58.040 52.632 0.00 0.00 0.00 2.69
1839 6231 4.740922 TCGGTTAGACACGCCCTA 57.259 55.556 0.00 0.00 0.00 3.53
1855 6247 7.672122 TTACTCCTCTATTTTCTAAGGGGTC 57.328 40.000 0.00 0.00 41.74 4.46
1857 6249 7.127493 AGGTTTACTCCTCTATTTTCTAAGGGG 59.873 40.741 0.00 0.00 35.38 4.79
1864 6256 8.537858 TCCACTAAGGTTTACTCCTCTATTTTC 58.462 37.037 0.00 0.00 36.74 2.29
1876 6268 8.959705 AGCAAATATACTCCACTAAGGTTTAC 57.040 34.615 0.00 0.00 39.02 2.01
1899 6291 1.135112 CCGGCCAAAATTTAGTGGAGC 60.135 52.381 12.26 0.00 37.03 4.70
1900 6292 2.163613 GTCCGGCCAAAATTTAGTGGAG 59.836 50.000 12.26 5.72 37.03 3.86
1909 6301 1.076995 GGCTAGGTCCGGCCAAAAT 60.077 57.895 19.59 0.00 46.84 1.82
1923 6315 2.733298 TATAGGGGATTGGCTGGCTA 57.267 50.000 2.00 0.00 0.00 3.93
1928 6320 7.149277 ACTCCATTATATATAGGGGATTGGCT 58.851 38.462 12.38 0.00 0.00 4.75
1929 6321 7.394144 ACTCCATTATATATAGGGGATTGGC 57.606 40.000 12.38 0.00 0.00 4.52
1967 6359 4.806330 AGTGTTCGACGAAATGTATGAGT 58.194 39.130 12.67 0.00 0.00 3.41
1973 6365 5.675970 CATAACAAGTGTTCGACGAAATGT 58.324 37.500 12.67 11.93 39.31 2.71
1991 6383 2.024918 CGCCATGGAGGTGCATAAC 58.975 57.895 18.40 0.00 41.83 1.89
1992 6384 4.557554 CGCCATGGAGGTGCATAA 57.442 55.556 18.40 0.00 41.83 1.90
2000 6392 2.513204 CTGCCACTCGCCATGGAG 60.513 66.667 18.40 13.80 39.87 3.86
2009 6401 2.042831 GTCACCATGGCTGCCACTC 61.043 63.158 25.99 7.14 35.80 3.51
2040 6432 1.614824 CCTCCTCCTCCAGTTGCCT 60.615 63.158 0.00 0.00 0.00 4.75
2041 6433 1.613630 TCCTCCTCCTCCAGTTGCC 60.614 63.158 0.00 0.00 0.00 4.52
2047 6439 0.260230 CTGCTACTCCTCCTCCTCCA 59.740 60.000 0.00 0.00 0.00 3.86
2049 6441 0.396417 TGCTGCTACTCCTCCTCCTC 60.396 60.000 0.00 0.00 0.00 3.71
2051 6443 0.392336 CATGCTGCTACTCCTCCTCC 59.608 60.000 0.00 0.00 0.00 4.30
2052 6444 0.249826 GCATGCTGCTACTCCTCCTC 60.250 60.000 11.37 0.00 40.96 3.71
2053 6445 0.979709 TGCATGCTGCTACTCCTCCT 60.980 55.000 20.33 0.00 45.31 3.69
2081 6484 2.866028 CCTTTGCTGCTGCTCGTC 59.134 61.111 17.00 0.00 40.48 4.20
2082 6485 3.360340 GCCTTTGCTGCTGCTCGT 61.360 61.111 17.00 0.00 40.48 4.18
2084 6487 2.257676 GTGCCTTTGCTGCTGCTC 59.742 61.111 17.00 2.00 40.48 4.26
2088 6491 3.218470 TTGCGTGCCTTTGCTGCT 61.218 55.556 0.00 0.00 39.36 4.24
2095 6498 2.357517 CTCCGAGTTGCGTGCCTT 60.358 61.111 0.00 0.00 38.67 4.35
2096 6499 4.379243 CCTCCGAGTTGCGTGCCT 62.379 66.667 0.00 0.00 38.67 4.75
2097 6500 4.373116 TCCTCCGAGTTGCGTGCC 62.373 66.667 0.00 0.00 38.67 5.01
2098 6501 2.811317 CTCCTCCGAGTTGCGTGC 60.811 66.667 0.00 0.00 38.67 5.34
2099 6502 2.125912 CCTCCTCCGAGTTGCGTG 60.126 66.667 0.00 0.00 38.67 5.34
2100 6503 2.282958 TCCTCCTCCGAGTTGCGT 60.283 61.111 0.00 0.00 38.67 5.24
2101 6504 2.492090 CTCCTCCTCCGAGTTGCG 59.508 66.667 0.00 0.00 40.47 4.85
2102 6505 1.671901 CTCCTCCTCCTCCGAGTTGC 61.672 65.000 0.00 0.00 33.93 4.17
2104 6507 1.380650 GCTCCTCCTCCTCCGAGTT 60.381 63.158 0.00 0.00 33.93 3.01
2107 6510 2.277072 CTGCTCCTCCTCCTCCGA 59.723 66.667 0.00 0.00 0.00 4.55
2108 6511 3.535962 GCTGCTCCTCCTCCTCCG 61.536 72.222 0.00 0.00 0.00 4.63
2109 6512 3.535962 CGCTGCTCCTCCTCCTCC 61.536 72.222 0.00 0.00 0.00 4.30
2110 6513 3.535962 CCGCTGCTCCTCCTCCTC 61.536 72.222 0.00 0.00 0.00 3.71
2119 6554 4.498520 TACTGCTCGCCGCTGCTC 62.499 66.667 0.00 0.00 40.84 4.26
2127 6562 3.562150 GCTGCTGCTACTGCTCGC 61.562 66.667 8.53 0.00 40.48 5.03
2128 6563 2.125793 TGCTGCTGCTACTGCTCG 60.126 61.111 17.00 0.00 40.48 5.03
2129 6564 2.451167 CGTGCTGCTGCTACTGCTC 61.451 63.158 17.00 1.04 40.48 4.26
2157 6592 0.392863 TACTACGTACCGCTGCTCCA 60.393 55.000 0.00 0.00 0.00 3.86
2168 6603 1.200716 GGTGTGTGCTGCTACTACGTA 59.799 52.381 0.00 0.00 0.00 3.57
2169 6604 0.038526 GGTGTGTGCTGCTACTACGT 60.039 55.000 0.00 0.00 0.00 3.57
2170 6605 1.071019 CGGTGTGTGCTGCTACTACG 61.071 60.000 0.00 5.82 0.00 3.51
2172 6607 1.589630 CCGGTGTGTGCTGCTACTA 59.410 57.895 0.00 0.00 0.00 1.82
2174 6609 3.423154 GCCGGTGTGTGCTGCTAC 61.423 66.667 1.90 0.77 0.00 3.58
2182 6617 3.876589 CTACTTGCCGCCGGTGTGT 62.877 63.158 15.14 9.51 0.00 3.72
2183 6618 3.118454 CTACTTGCCGCCGGTGTG 61.118 66.667 15.14 6.69 0.00 3.82
2190 6625 4.460873 GTTGCCGCTACTTGCCGC 62.461 66.667 0.00 0.00 44.22 6.53
2191 6626 3.047280 TGTTGCCGCTACTTGCCG 61.047 61.111 6.52 0.00 38.78 5.69
2192 6627 2.561373 GTGTTGCCGCTACTTGCC 59.439 61.111 6.52 0.00 38.78 4.52
2193 6628 2.173382 CGTGTTGCCGCTACTTGC 59.827 61.111 6.52 0.00 38.57 4.01
2224 6659 4.395583 GTGTTGCCGCTGCTGCTC 62.396 66.667 16.81 10.38 38.71 4.26
2229 6664 4.629115 GGTGTGTGTTGCCGCTGC 62.629 66.667 0.00 0.00 38.26 5.25
2232 6667 2.278531 GTTGGTGTGTGTTGCCGC 60.279 61.111 0.00 0.00 0.00 6.53
2234 6669 2.411290 CCGTTGGTGTGTGTTGCC 59.589 61.111 0.00 0.00 0.00 4.52
2252 6687 1.673337 CTACTGCTGCTGCTTGCCA 60.673 57.895 17.00 0.00 42.00 4.92
2254 6689 2.254703 CTGCTACTGCTGCTGCTTGC 62.255 60.000 17.00 14.34 40.48 4.01
2256 6691 4.298009 CTGCTACTGCTGCTGCTT 57.702 55.556 17.00 6.34 40.48 3.91
2265 6700 0.236711 GTGTGCTGTTGCTGCTACTG 59.763 55.000 14.81 14.71 40.48 2.74
2266 6701 0.179048 TGTGTGCTGTTGCTGCTACT 60.179 50.000 14.81 0.00 40.48 2.57
2267 6702 0.040958 GTGTGTGCTGTTGCTGCTAC 60.041 55.000 7.29 7.29 40.48 3.58
2268 6703 1.165907 GGTGTGTGCTGTTGCTGCTA 61.166 55.000 0.00 0.00 40.48 3.49
2269 6704 2.484062 GGTGTGTGCTGTTGCTGCT 61.484 57.895 0.00 0.00 40.48 4.24
2270 6705 2.026590 GGTGTGTGCTGTTGCTGC 59.973 61.111 0.00 0.00 40.48 5.25
2271 6706 2.328989 CGGTGTGTGCTGTTGCTG 59.671 61.111 0.00 0.00 40.48 4.41
2312 6747 3.191539 GCTGTGCCTCGCTACTGC 61.192 66.667 0.00 0.00 35.23 4.40
2313 6748 1.808799 CTGCTGTGCCTCGCTACTG 60.809 63.158 0.00 0.00 0.00 2.74
2314 6749 2.575993 CTGCTGTGCCTCGCTACT 59.424 61.111 0.00 0.00 0.00 2.57
2315 6750 3.191539 GCTGCTGTGCCTCGCTAC 61.192 66.667 0.00 0.00 0.00 3.58
2316 6751 3.654173 CTGCTGCTGTGCCTCGCTA 62.654 63.158 0.00 0.00 0.00 4.26
2320 6755 3.432588 CTGCTGCTGCTGTGCCTC 61.433 66.667 17.00 0.00 40.48 4.70
2323 6758 3.973516 TTGCTGCTGCTGCTGTGC 61.974 61.111 27.67 18.47 39.81 4.57
2324 6759 2.050351 GTTGCTGCTGCTGCTGTG 60.050 61.111 27.67 10.72 39.81 3.66
2325 6760 1.461091 AATGTTGCTGCTGCTGCTGT 61.461 50.000 27.67 11.48 39.81 4.40
2326 6761 0.319555 AAATGTTGCTGCTGCTGCTG 60.320 50.000 27.67 16.73 40.48 4.41
2327 6762 1.201647 CTAAATGTTGCTGCTGCTGCT 59.798 47.619 27.67 12.30 40.48 4.24
2328 6763 1.068055 ACTAAATGTTGCTGCTGCTGC 60.068 47.619 22.51 22.51 40.48 5.25
2329 6764 2.592194 CACTAAATGTTGCTGCTGCTG 58.408 47.619 17.00 0.77 40.48 4.41
2330 6765 1.542915 CCACTAAATGTTGCTGCTGCT 59.457 47.619 17.00 0.00 40.48 4.24
2331 6766 1.986698 CCACTAAATGTTGCTGCTGC 58.013 50.000 8.89 8.89 40.20 5.25
2332 6767 1.403249 GGCCACTAAATGTTGCTGCTG 60.403 52.381 0.00 0.00 37.46 4.41
2333 6768 0.890683 GGCCACTAAATGTTGCTGCT 59.109 50.000 0.00 0.00 37.46 4.24
2334 6769 0.456653 CGGCCACTAAATGTTGCTGC 60.457 55.000 2.24 0.00 36.98 5.25
2335 6770 0.881118 ACGGCCACTAAATGTTGCTG 59.119 50.000 2.24 0.00 45.83 4.41
2336 6771 2.081462 GTACGGCCACTAAATGTTGCT 58.919 47.619 2.24 0.00 37.46 3.91
2337 6772 1.131693 GGTACGGCCACTAAATGTTGC 59.868 52.381 2.24 0.00 36.68 4.17
2358 6793 1.111715 CCCCTGCCCGTACTACTACC 61.112 65.000 0.00 0.00 0.00 3.18
2386 6821 1.153005 CTGAAGCTCCCATGGCCTC 60.153 63.158 6.09 0.00 0.00 4.70
2387 6822 2.687610 CCTGAAGCTCCCATGGCCT 61.688 63.158 6.09 0.00 0.00 5.19
2420 6855 1.063806 CTCTTCACGCAAAGACCTCG 58.936 55.000 0.00 0.00 32.03 4.63
2429 6871 5.520288 GCTGAGTATAATTTCTCTTCACGCA 59.480 40.000 0.00 0.00 0.00 5.24
2432 6874 6.517914 CGGCTGAGTATAATTTCTCTTCAC 57.482 41.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.