Multiple sequence alignment - TraesCS4A01G407500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G407500 chr4A 100.000 3724 0 0 1 3724 680369183 680372906 0.000000e+00 6878.0
1 TraesCS4A01G407500 chr4D 84.579 1044 94 39 1941 2975 473810751 473811736 0.000000e+00 974.0
2 TraesCS4A01G407500 chr4D 85.602 764 24 22 570 1305 473809284 473809989 0.000000e+00 723.0
3 TraesCS4A01G407500 chr4D 91.691 337 27 1 1 337 473808638 473808973 2.030000e-127 466.0
4 TraesCS4A01G407500 chr4D 92.857 322 13 3 3183 3494 473813432 473813753 3.390000e-125 459.0
5 TraesCS4A01G407500 chr4D 81.533 287 25 13 1641 1912 473810493 473810766 1.050000e-50 211.0
6 TraesCS4A01G407500 chr4D 92.982 57 3 1 2422 2477 502406273 502406329 8.570000e-12 82.4
7 TraesCS4A01G407500 chr4B 89.686 669 34 12 2768 3408 596374702 596375363 0.000000e+00 821.0
8 TraesCS4A01G407500 chr4B 88.889 594 18 16 734 1305 596372529 596373096 0.000000e+00 688.0
9 TraesCS4A01G407500 chr4B 86.774 499 48 7 1941 2435 596373890 596374374 1.180000e-149 540.0
10 TraesCS4A01G407500 chr4B 90.417 240 20 3 2518 2755 596374421 596374659 2.790000e-81 313.0
11 TraesCS4A01G407500 chr4B 85.366 287 15 11 1641 1912 596373631 596373905 4.740000e-69 272.0
12 TraesCS4A01G407500 chr4B 90.196 102 5 2 3467 3568 596375352 596375448 1.090000e-25 128.0
13 TraesCS4A01G407500 chr4B 76.316 228 26 21 403 628 596372182 596372383 3.060000e-16 97.1
14 TraesCS4A01G407500 chr4B 91.111 45 4 0 651 695 596372466 596372510 1.120000e-05 62.1
15 TraesCS4A01G407500 chr4B 100.000 33 0 0 3647 3679 596375444 596375476 1.120000e-05 62.1
16 TraesCS4A01G407500 chr7A 95.789 95 3 1 2832 2926 49234463 49234370 6.440000e-33 152.0
17 TraesCS4A01G407500 chr7A 93.939 99 4 2 2829 2926 49354189 49354092 8.330000e-32 148.0
18 TraesCS4A01G407500 chr7A 92.308 52 4 0 3673 3724 164447338 164447389 1.430000e-09 75.0
19 TraesCS4A01G407500 chr7A 90.566 53 5 0 3672 3724 203965939 203965887 1.860000e-08 71.3
20 TraesCS4A01G407500 chr3B 94.059 101 4 2 2838 2936 560090359 560090459 6.440000e-33 152.0
21 TraesCS4A01G407500 chr3B 88.889 90 10 0 3564 3653 688904998 688905087 1.090000e-20 111.0
22 TraesCS4A01G407500 chr2D 91.743 109 9 0 1013 1121 216327291 216327399 6.440000e-33 152.0
23 TraesCS4A01G407500 chr2A 91.743 109 9 0 1013 1121 304982580 304982472 6.440000e-33 152.0
24 TraesCS4A01G407500 chr1D 95.833 96 1 2 2839 2933 416592371 416592464 6.440000e-33 152.0
25 TraesCS4A01G407500 chr1D 90.351 114 10 1 2811 2924 461899652 461899764 8.330000e-32 148.0
26 TraesCS4A01G407500 chr1D 94.545 55 2 1 2437 2491 307349239 307349186 2.380000e-12 84.2
27 TraesCS4A01G407500 chr1D 94.340 53 2 1 3672 3724 383157774 383157723 3.080000e-11 80.5
28 TraesCS4A01G407500 chr1D 90.323 62 1 4 2437 2497 251707229 251707286 3.990000e-10 76.8
29 TraesCS4A01G407500 chr3D 89.344 122 8 3 2839 2957 368881084 368880965 8.330000e-32 148.0
30 TraesCS4A01G407500 chr2B 90.826 109 10 0 1013 1121 332331825 332331933 3.000000e-31 147.0
31 TraesCS4A01G407500 chr2B 97.917 48 1 0 2437 2484 398970791 398970744 2.380000e-12 84.2
32 TraesCS4A01G407500 chr2B 93.878 49 3 0 3676 3724 766523844 766523796 1.430000e-09 75.0
33 TraesCS4A01G407500 chr2B 90.909 55 4 1 3670 3724 691994688 691994741 5.160000e-09 73.1
34 TraesCS4A01G407500 chr2B 82.895 76 7 6 3646 3719 514348496 514348567 3.110000e-06 63.9
35 TraesCS4A01G407500 chr1A 91.509 106 6 3 2831 2935 552905369 552905266 3.880000e-30 143.0
36 TraesCS4A01G407500 chr1A 90.909 66 3 2 2427 2491 29287071 29287008 6.630000e-13 86.1
37 TraesCS4A01G407500 chr7D 90.909 88 6 2 3569 3656 124512775 124512860 2.350000e-22 117.0
38 TraesCS4A01G407500 chr7D 94.643 56 0 2 2425 2477 54836089 54836144 2.380000e-12 84.2
39 TraesCS4A01G407500 chr3A 88.421 95 9 2 3561 3653 1628349 1628443 3.040000e-21 113.0
40 TraesCS4A01G407500 chr3A 90.909 55 4 1 3670 3724 287684677 287684730 5.160000e-09 73.1
41 TraesCS4A01G407500 chr7B 87.755 98 9 3 3553 3650 115386205 115386299 1.090000e-20 111.0
42 TraesCS4A01G407500 chr7B 96.078 51 2 0 2434 2484 637389437 637389487 2.380000e-12 84.2
43 TraesCS4A01G407500 chr5D 88.372 86 9 1 3564 3648 408660399 408660314 6.580000e-18 102.0
44 TraesCS4A01G407500 chr5D 93.443 61 1 3 2434 2493 330385101 330385159 1.840000e-13 87.9
45 TraesCS4A01G407500 chr5D 88.333 60 6 1 3665 3724 490938857 490938799 1.860000e-08 71.3
46 TraesCS4A01G407500 chrUn 86.364 88 10 1 3564 3649 41907507 41907420 1.100000e-15 95.3
47 TraesCS4A01G407500 chr5B 87.500 80 10 0 3569 3648 559684583 559684504 3.960000e-15 93.5
48 TraesCS4A01G407500 chr5B 94.231 52 2 1 3673 3724 658620320 658620270 1.110000e-10 78.7
49 TraesCS4A01G407500 chr1B 97.917 48 1 0 2437 2484 619575398 619575351 2.380000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G407500 chr4A 680369183 680372906 3723 False 6878.000000 6878 100.000000 1 3724 1 chr4A.!!$F1 3723
1 TraesCS4A01G407500 chr4D 473808638 473813753 5115 False 566.600000 974 87.252400 1 3494 5 chr4D.!!$F2 3493
2 TraesCS4A01G407500 chr4B 596372182 596375476 3294 False 331.477778 821 88.750556 403 3679 9 chr4B.!!$F1 3276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 1172 0.317770 CTCGGAGCAGAAGAGATCGC 60.318 60.0 0.00 0.00 34.13 4.58 F
1157 1387 0.251121 TCGATTTGCAAAGCTCCCCA 60.251 50.0 23.64 1.44 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 2504 0.107654 AATAGTTCAGACTGCCCCGC 60.108 55.0 0.0 0.0 36.6 6.13 R
2948 3577 0.108329 ACCGTCCTTGCCGATTAGTG 60.108 55.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.825341 CCATCGATCAGCCTCCACA 59.175 57.895 0.00 0.00 0.00 4.17
77 78 3.524789 TGATGGAAGGATCTTCACATGGT 59.475 43.478 9.48 0.00 0.00 3.55
95 96 4.819105 TGGTGATCGATGAGTAAGGTTT 57.181 40.909 0.54 0.00 0.00 3.27
150 151 5.340439 AGATGTCGAGGTTTAAACTAGGG 57.660 43.478 17.50 5.76 0.00 3.53
151 152 4.776308 AGATGTCGAGGTTTAAACTAGGGT 59.224 41.667 17.50 0.00 0.00 4.34
152 153 4.961438 TGTCGAGGTTTAAACTAGGGTT 57.039 40.909 17.50 0.00 37.24 4.11
160 161 5.361571 AGGTTTAAACTAGGGTTGGTTTGTG 59.638 40.000 17.50 0.00 38.31 3.33
165 166 4.094830 ACTAGGGTTGGTTTGTGTTAGG 57.905 45.455 0.00 0.00 0.00 2.69
188 189 1.689273 TGGGTATTTGTTGCACAACCC 59.311 47.619 10.82 15.33 43.65 4.11
214 215 5.863397 CCAAATGTTGTTGGTGTCATGTATC 59.137 40.000 0.00 0.00 42.74 2.24
216 217 3.996480 TGTTGTTGGTGTCATGTATCGA 58.004 40.909 0.00 0.00 0.00 3.59
237 238 4.738740 CGATGGATGACTTTAGTTCCGTAC 59.261 45.833 0.00 0.00 29.60 3.67
292 293 6.470235 GCTTCGGCATTTGCATGATAATATAC 59.530 38.462 4.74 0.00 44.36 1.47
295 296 7.474190 TCGGCATTTGCATGATAATATACATG 58.526 34.615 4.74 0.00 44.32 3.21
296 297 7.336427 TCGGCATTTGCATGATAATATACATGA 59.664 33.333 16.38 2.64 44.28 3.07
303 304 7.829725 TGCATGATAATATACATGAAAAGGGC 58.170 34.615 16.38 0.00 44.28 5.19
310 311 4.822685 ATACATGAAAAGGGCATTTGCA 57.177 36.364 7.89 7.89 40.85 4.08
315 316 2.632028 TGAAAAGGGCATTTGCAGCTAA 59.368 40.909 0.15 0.00 44.36 3.09
321 322 3.633986 AGGGCATTTGCAGCTAAGTTATC 59.366 43.478 4.74 0.00 44.36 1.75
324 325 5.394553 GGGCATTTGCAGCTAAGTTATCTTT 60.395 40.000 4.74 0.00 44.36 2.52
359 365 5.487433 TGAAATATTTTCGACCTCTCAGCA 58.513 37.500 1.43 0.00 0.00 4.41
361 367 6.599244 TGAAATATTTTCGACCTCTCAGCAAT 59.401 34.615 1.43 0.00 0.00 3.56
368 374 2.097629 CGACCTCTCAGCAATCGTAGAA 59.902 50.000 0.00 0.00 43.58 2.10
378 384 8.656849 TCTCAGCAATCGTAGAAAAATTTAGAC 58.343 33.333 0.00 0.00 43.58 2.59
390 396 8.818622 AGAAAAATTTAGACTAATACACCCCC 57.181 34.615 0.00 0.00 0.00 5.40
391 397 8.395605 AGAAAAATTTAGACTAATACACCCCCA 58.604 33.333 0.00 0.00 0.00 4.96
393 399 5.641789 ATTTAGACTAATACACCCCCACC 57.358 43.478 0.00 0.00 0.00 4.61
394 400 1.889174 AGACTAATACACCCCCACCC 58.111 55.000 0.00 0.00 0.00 4.61
395 401 0.841961 GACTAATACACCCCCACCCC 59.158 60.000 0.00 0.00 0.00 4.95
397 403 0.625091 CTAATACACCCCCACCCCCA 60.625 60.000 0.00 0.00 0.00 4.96
398 404 0.920271 TAATACACCCCCACCCCCAC 60.920 60.000 0.00 0.00 0.00 4.61
414 527 1.978617 CACCCCGAGCTTTGCCATT 60.979 57.895 0.00 0.00 0.00 3.16
424 537 4.067192 GAGCTTTGCCATTTGGACAAAAT 58.933 39.130 15.25 9.92 39.15 1.82
429 542 2.971330 TGCCATTTGGACAAAATCAGGT 59.029 40.909 0.00 0.00 36.28 4.00
436 549 8.310382 CCATTTGGACAAAATCAGGTTGTTATA 58.690 33.333 1.17 0.00 39.29 0.98
437 550 9.139174 CATTTGGACAAAATCAGGTTGTTATAC 57.861 33.333 1.17 0.00 39.29 1.47
438 551 6.827586 TGGACAAAATCAGGTTGTTATACC 57.172 37.500 0.00 0.00 39.29 2.73
439 552 6.307776 TGGACAAAATCAGGTTGTTATACCA 58.692 36.000 0.00 0.00 39.29 3.25
440 553 6.951198 TGGACAAAATCAGGTTGTTATACCAT 59.049 34.615 0.00 0.00 39.29 3.55
441 554 8.110271 TGGACAAAATCAGGTTGTTATACCATA 58.890 33.333 0.00 0.00 39.29 2.74
443 556 7.996385 ACAAAATCAGGTTGTTATACCATAGC 58.004 34.615 0.00 0.00 40.82 2.97
445 558 8.465999 CAAAATCAGGTTGTTATACCATAGCAA 58.534 33.333 0.00 0.00 40.82 3.91
446 559 7.568199 AATCAGGTTGTTATACCATAGCAAC 57.432 36.000 14.08 14.08 40.82 4.17
447 560 6.056090 TCAGGTTGTTATACCATAGCAACA 57.944 37.500 20.32 2.00 40.82 3.33
448 561 6.658849 TCAGGTTGTTATACCATAGCAACAT 58.341 36.000 20.32 14.26 40.82 2.71
449 562 6.542005 TCAGGTTGTTATACCATAGCAACATG 59.458 38.462 23.05 23.05 46.44 3.21
450 563 6.318648 CAGGTTGTTATACCATAGCAACATGT 59.681 38.462 21.79 0.00 42.82 3.21
451 564 6.318648 AGGTTGTTATACCATAGCAACATGTG 59.681 38.462 20.32 0.00 40.82 3.21
452 565 6.951030 GGTTGTTATACCATAGCAACATGTGC 60.951 42.308 20.32 5.60 44.75 4.57
469 582 4.497473 TGTGCAATTTCCCGTTTAAGAG 57.503 40.909 0.00 0.00 0.00 2.85
481 594 3.254892 CGTTTAAGAGAACAGAGGAGGC 58.745 50.000 0.00 0.00 0.00 4.70
489 602 2.039084 AGAACAGAGGAGGCGATGTTTT 59.961 45.455 0.00 0.00 36.08 2.43
490 603 1.813513 ACAGAGGAGGCGATGTTTTG 58.186 50.000 0.00 0.00 0.00 2.44
500 613 5.113502 AGGCGATGTTTTGAAAGAAGAAG 57.886 39.130 0.00 0.00 0.00 2.85
505 618 6.912591 GCGATGTTTTGAAAGAAGAAGAAGAA 59.087 34.615 0.00 0.00 0.00 2.52
507 620 8.338259 CGATGTTTTGAAAGAAGAAGAAGAAGA 58.662 33.333 0.00 0.00 0.00 2.87
514 627 9.672673 TTGAAAGAAGAAGAAGAAGAAGAAGAA 57.327 29.630 0.00 0.00 0.00 2.52
515 628 9.323985 TGAAAGAAGAAGAAGAAGAAGAAGAAG 57.676 33.333 0.00 0.00 0.00 2.85
516 629 9.541143 GAAAGAAGAAGAAGAAGAAGAAGAAGA 57.459 33.333 0.00 0.00 0.00 2.87
517 630 9.898152 AAAGAAGAAGAAGAAGAAGAAGAAGAA 57.102 29.630 0.00 0.00 0.00 2.52
518 631 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
519 632 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
520 633 8.887036 AAGAAGAAGAAGAAGAAGAAGAAGAC 57.113 34.615 0.00 0.00 0.00 3.01
521 634 8.017418 AGAAGAAGAAGAAGAAGAAGAAGACA 57.983 34.615 0.00 0.00 0.00 3.41
522 635 8.482128 AGAAGAAGAAGAAGAAGAAGAAGACAA 58.518 33.333 0.00 0.00 0.00 3.18
523 636 8.432110 AAGAAGAAGAAGAAGAAGAAGACAAC 57.568 34.615 0.00 0.00 0.00 3.32
524 637 6.699642 AGAAGAAGAAGAAGAAGAAGACAACG 59.300 38.462 0.00 0.00 0.00 4.10
525 638 6.150396 AGAAGAAGAAGAAGAAGACAACGA 57.850 37.500 0.00 0.00 0.00 3.85
526 639 5.980715 AGAAGAAGAAGAAGAAGACAACGAC 59.019 40.000 0.00 0.00 0.00 4.34
527 640 4.623002 AGAAGAAGAAGAAGACAACGACC 58.377 43.478 0.00 0.00 0.00 4.79
528 641 3.014604 AGAAGAAGAAGACAACGACCG 57.985 47.619 0.00 0.00 0.00 4.79
529 642 2.621998 AGAAGAAGAAGACAACGACCGA 59.378 45.455 0.00 0.00 0.00 4.69
530 643 3.256136 AGAAGAAGAAGACAACGACCGAT 59.744 43.478 0.00 0.00 0.00 4.18
531 644 4.458295 AGAAGAAGAAGACAACGACCGATA 59.542 41.667 0.00 0.00 0.00 2.92
532 645 4.358494 AGAAGAAGACAACGACCGATAG 57.642 45.455 0.00 0.00 0.00 2.08
533 646 4.008330 AGAAGAAGACAACGACCGATAGA 58.992 43.478 0.00 0.00 39.76 1.98
534 647 4.458295 AGAAGAAGACAACGACCGATAGAA 59.542 41.667 0.00 0.00 39.76 2.10
535 648 4.358494 AGAAGACAACGACCGATAGAAG 57.642 45.455 0.00 0.00 39.76 2.85
536 649 2.563471 AGACAACGACCGATAGAAGC 57.437 50.000 0.00 0.00 39.76 3.86
537 650 1.189403 GACAACGACCGATAGAAGCG 58.811 55.000 0.00 0.00 39.76 4.68
548 661 2.738643 CGATAGAAGCGGGTGACAACAT 60.739 50.000 0.00 0.00 39.76 2.71
553 666 1.896660 GCGGGTGACAACATGTGGT 60.897 57.895 5.28 5.28 0.00 4.16
560 673 4.279671 GGGTGACAACATGTGGTAAATGAA 59.720 41.667 5.67 0.00 0.00 2.57
563 676 5.794945 GTGACAACATGTGGTAAATGAATCG 59.205 40.000 5.67 0.00 0.00 3.34
564 677 5.703130 TGACAACATGTGGTAAATGAATCGA 59.297 36.000 5.67 0.00 0.00 3.59
565 678 5.938322 ACAACATGTGGTAAATGAATCGAC 58.062 37.500 3.32 0.00 0.00 4.20
566 679 5.471797 ACAACATGTGGTAAATGAATCGACA 59.528 36.000 3.32 0.00 0.00 4.35
567 680 5.545658 ACATGTGGTAAATGAATCGACAC 57.454 39.130 0.00 0.00 0.00 3.67
568 681 4.092821 ACATGTGGTAAATGAATCGACACG 59.907 41.667 0.00 0.00 0.00 4.49
582 705 1.594518 CGACACGGACAAAACTGCAAG 60.595 52.381 0.00 0.00 42.29 4.01
586 709 0.657368 CGGACAAAACTGCAAGCGTC 60.657 55.000 0.00 0.00 37.60 5.19
622 745 2.642700 CCCTTTTGGAACGCACCG 59.357 61.111 0.00 0.00 44.07 4.94
645 781 6.089551 CCGATTACTAGCTTGGATTTATGTCG 59.910 42.308 0.00 0.00 0.00 4.35
652 788 6.325919 AGCTTGGATTTATGTCGAACAAAA 57.674 33.333 0.00 0.00 0.00 2.44
653 789 6.149633 AGCTTGGATTTATGTCGAACAAAAC 58.850 36.000 0.00 0.00 0.00 2.43
654 790 5.918011 GCTTGGATTTATGTCGAACAAAACA 59.082 36.000 0.00 0.00 0.00 2.83
655 791 6.088085 GCTTGGATTTATGTCGAACAAAACAG 59.912 38.462 0.00 0.00 0.00 3.16
656 792 6.007936 TGGATTTATGTCGAACAAAACAGG 57.992 37.500 0.00 0.00 0.00 4.00
657 793 5.048364 TGGATTTATGTCGAACAAAACAGGG 60.048 40.000 0.00 0.00 0.00 4.45
658 794 4.839668 TTTATGTCGAACAAAACAGGGG 57.160 40.909 0.00 0.00 0.00 4.79
659 795 1.616159 ATGTCGAACAAAACAGGGGG 58.384 50.000 0.00 0.00 0.00 5.40
689 872 3.457234 GTGGCCAAGGAAGAAAAAGTTG 58.543 45.455 7.24 0.00 0.00 3.16
710 894 8.634475 AGTTGCAAGAAAGAATACAAACTTTC 57.366 30.769 0.00 0.00 46.80 2.62
720 904 8.622948 AAGAATACAAACTTTCAAGGAGTAGG 57.377 34.615 0.00 0.00 0.00 3.18
721 905 7.974504 AGAATACAAACTTTCAAGGAGTAGGA 58.025 34.615 0.00 0.00 0.00 2.94
722 906 8.097662 AGAATACAAACTTTCAAGGAGTAGGAG 58.902 37.037 0.00 0.00 0.00 3.69
723 907 5.632034 ACAAACTTTCAAGGAGTAGGAGT 57.368 39.130 0.00 0.00 0.00 3.85
724 908 6.742559 ACAAACTTTCAAGGAGTAGGAGTA 57.257 37.500 0.00 0.00 0.00 2.59
725 909 6.760291 ACAAACTTTCAAGGAGTAGGAGTAG 58.240 40.000 0.00 0.00 0.00 2.57
726 910 6.326843 ACAAACTTTCAAGGAGTAGGAGTAGT 59.673 38.462 0.00 0.00 0.00 2.73
727 911 7.508296 ACAAACTTTCAAGGAGTAGGAGTAGTA 59.492 37.037 0.00 0.00 0.00 1.82
728 912 7.706100 AACTTTCAAGGAGTAGGAGTAGTAG 57.294 40.000 0.00 0.00 0.00 2.57
729 913 6.792424 ACTTTCAAGGAGTAGGAGTAGTAGT 58.208 40.000 0.00 0.00 0.00 2.73
730 914 7.926705 ACTTTCAAGGAGTAGGAGTAGTAGTA 58.073 38.462 0.00 0.00 0.00 1.82
731 915 8.048514 ACTTTCAAGGAGTAGGAGTAGTAGTAG 58.951 40.741 0.00 0.00 0.00 2.57
732 916 7.507797 TTCAAGGAGTAGGAGTAGTAGTAGT 57.492 40.000 0.00 0.00 0.00 2.73
758 942 1.727511 ATTTGCATGGACGGATGGCG 61.728 55.000 0.00 0.00 0.00 5.69
813 997 2.322830 GGAACGTCCAAAGTCGCCC 61.323 63.158 0.00 0.00 36.28 6.13
815 999 4.675029 ACGTCCAAAGTCGCCCCG 62.675 66.667 0.00 0.00 0.00 5.73
842 1026 2.218603 TCTCCGTTCAAAGCAAACCTC 58.781 47.619 0.00 0.00 0.00 3.85
856 1040 4.103943 AGCAAACCTCCTTCTTCTTCTTCT 59.896 41.667 0.00 0.00 0.00 2.85
857 1041 4.824537 GCAAACCTCCTTCTTCTTCTTCTT 59.175 41.667 0.00 0.00 0.00 2.52
858 1042 5.049060 GCAAACCTCCTTCTTCTTCTTCTTC 60.049 44.000 0.00 0.00 0.00 2.87
859 1043 4.901197 ACCTCCTTCTTCTTCTTCTTCC 57.099 45.455 0.00 0.00 0.00 3.46
860 1044 3.259625 ACCTCCTTCTTCTTCTTCTTCCG 59.740 47.826 0.00 0.00 0.00 4.30
861 1045 3.259625 CCTCCTTCTTCTTCTTCTTCCGT 59.740 47.826 0.00 0.00 0.00 4.69
862 1046 4.490743 CTCCTTCTTCTTCTTCTTCCGTC 58.509 47.826 0.00 0.00 0.00 4.79
893 1077 3.244105 CTGGTTTCACGCGTCCAG 58.756 61.111 24.77 24.77 40.83 3.86
914 1134 1.134098 ACCCGATCGAGCATCCAAATT 60.134 47.619 18.66 0.00 0.00 1.82
915 1135 1.265095 CCCGATCGAGCATCCAAATTG 59.735 52.381 18.66 0.00 0.00 2.32
948 1168 0.891373 CCAACTCGGAGCAGAAGAGA 59.109 55.000 4.58 0.00 36.56 3.10
949 1169 1.480137 CCAACTCGGAGCAGAAGAGAT 59.520 52.381 4.58 0.00 36.56 2.75
950 1170 2.481104 CCAACTCGGAGCAGAAGAGATC 60.481 54.545 4.58 0.00 36.56 2.75
951 1171 1.021202 ACTCGGAGCAGAAGAGATCG 58.979 55.000 4.58 0.00 36.03 3.69
952 1172 0.317770 CTCGGAGCAGAAGAGATCGC 60.318 60.000 0.00 0.00 34.13 4.58
992 1212 3.673484 GGCCGAGCAAGCAAGCAA 61.673 61.111 3.19 0.00 36.85 3.91
993 1213 2.126580 GCCGAGCAAGCAAGCAAG 60.127 61.111 3.19 0.00 36.85 4.01
994 1214 2.126580 CCGAGCAAGCAAGCAAGC 60.127 61.111 3.19 0.00 36.85 4.01
995 1215 2.640989 CGAGCAAGCAAGCAAGCA 59.359 55.556 10.52 0.00 36.85 3.91
999 1219 2.654912 GCAAGCAAGCAAGCAAGCG 61.655 57.895 3.19 0.00 40.15 4.68
1133 1353 2.292587 CCTACCAGGTCTCCTCCTCTTT 60.293 54.545 0.00 0.00 35.37 2.52
1156 1386 0.887933 TTCGATTTGCAAAGCTCCCC 59.112 50.000 23.64 5.40 0.00 4.81
1157 1387 0.251121 TCGATTTGCAAAGCTCCCCA 60.251 50.000 23.64 1.44 0.00 4.96
1158 1388 0.819582 CGATTTGCAAAGCTCCCCAT 59.180 50.000 23.64 1.49 0.00 4.00
1159 1389 1.202336 CGATTTGCAAAGCTCCCCATC 60.202 52.381 23.64 9.99 0.00 3.51
1206 1440 1.795162 CGATTGGCAAATTCTGACCGC 60.795 52.381 3.01 0.00 28.17 5.68
1305 1539 1.714794 GCCTACAGCTATGGTATGCG 58.285 55.000 0.00 0.00 38.99 4.73
1308 1542 3.515630 CCTACAGCTATGGTATGCGATG 58.484 50.000 0.00 0.00 0.00 3.84
1313 1585 2.076863 GCTATGGTATGCGATGGTTCC 58.923 52.381 0.00 0.00 0.00 3.62
1334 1606 1.065401 TCGTTGAGCTGCCTTGTTTTG 59.935 47.619 0.00 0.00 0.00 2.44
1341 1613 2.362077 AGCTGCCTTGTTTTGGTTGTAG 59.638 45.455 0.00 0.00 0.00 2.74
1342 1614 2.100749 GCTGCCTTGTTTTGGTTGTAGT 59.899 45.455 0.00 0.00 0.00 2.73
1344 1616 4.202070 GCTGCCTTGTTTTGGTTGTAGTAA 60.202 41.667 0.00 0.00 0.00 2.24
1346 1618 6.294286 GCTGCCTTGTTTTGGTTGTAGTAATA 60.294 38.462 0.00 0.00 0.00 0.98
1347 1619 7.584122 TGCCTTGTTTTGGTTGTAGTAATAA 57.416 32.000 0.00 0.00 0.00 1.40
1348 1620 8.184304 TGCCTTGTTTTGGTTGTAGTAATAAT 57.816 30.769 0.00 0.00 0.00 1.28
1349 1621 9.298250 TGCCTTGTTTTGGTTGTAGTAATAATA 57.702 29.630 0.00 0.00 0.00 0.98
1387 1659 4.338964 TGCATATGTCCAGCTGGTTATTTG 59.661 41.667 31.58 26.72 36.34 2.32
1392 1664 5.699097 TGTCCAGCTGGTTATTTGTAAAC 57.301 39.130 31.58 18.28 36.34 2.01
1399 1671 6.204688 CAGCTGGTTATTTGTAAACTCTGACA 59.795 38.462 5.57 0.00 0.00 3.58
1404 1676 7.095397 TGGTTATTTGTAAACTCTGACACATCG 60.095 37.037 0.00 0.00 0.00 3.84
1415 1687 2.931969 CTGACACATCGATGCTTGCTTA 59.068 45.455 25.11 6.35 0.00 3.09
1416 1688 3.333804 TGACACATCGATGCTTGCTTAA 58.666 40.909 25.11 0.55 0.00 1.85
1417 1689 3.940852 TGACACATCGATGCTTGCTTAAT 59.059 39.130 25.11 0.00 0.00 1.40
1418 1690 4.395854 TGACACATCGATGCTTGCTTAATT 59.604 37.500 25.11 0.00 0.00 1.40
1419 1691 4.665212 ACACATCGATGCTTGCTTAATTG 58.335 39.130 25.11 13.56 0.00 2.32
1420 1692 3.484649 CACATCGATGCTTGCTTAATTGC 59.515 43.478 25.11 0.00 0.00 3.56
1424 1696 3.882288 TCGATGCTTGCTTAATTGCCATA 59.118 39.130 0.00 0.00 0.00 2.74
1430 1702 4.913924 GCTTGCTTAATTGCCATATTCGAG 59.086 41.667 0.00 0.00 0.00 4.04
1438 1710 4.371624 TTGCCATATTCGAGATTGGGAT 57.628 40.909 10.46 0.00 29.19 3.85
1443 1728 5.940470 GCCATATTCGAGATTGGGATACTTT 59.060 40.000 10.46 0.00 0.00 2.66
1465 1750 4.764679 TTTTCATCACCGTTTCCATGAG 57.235 40.909 0.00 0.00 0.00 2.90
1466 1751 3.694043 TTCATCACCGTTTCCATGAGA 57.306 42.857 0.00 0.00 0.00 3.27
1467 1752 3.694043 TCATCACCGTTTCCATGAGAA 57.306 42.857 0.00 0.00 0.00 2.87
1468 1753 4.014569 TCATCACCGTTTCCATGAGAAA 57.985 40.909 0.00 0.00 42.28 2.52
1469 1754 4.393834 TCATCACCGTTTCCATGAGAAAA 58.606 39.130 9.91 0.00 45.93 2.29
1470 1755 4.824537 TCATCACCGTTTCCATGAGAAAAA 59.175 37.500 9.91 0.00 45.93 1.94
1471 1756 4.829064 TCACCGTTTCCATGAGAAAAAG 57.171 40.909 9.91 7.74 45.93 2.27
1472 1757 4.456535 TCACCGTTTCCATGAGAAAAAGA 58.543 39.130 9.91 5.04 45.93 2.52
1473 1758 4.884744 TCACCGTTTCCATGAGAAAAAGAA 59.115 37.500 9.91 0.00 45.93 2.52
1474 1759 5.358442 TCACCGTTTCCATGAGAAAAAGAAA 59.642 36.000 9.91 0.22 45.93 2.52
1475 1760 6.039616 CACCGTTTCCATGAGAAAAAGAAAA 58.960 36.000 9.91 0.00 45.93 2.29
1476 1761 6.533367 CACCGTTTCCATGAGAAAAAGAAAAA 59.467 34.615 9.91 0.00 45.93 1.94
1524 1879 6.694411 CCAAGAAGAATATCTTTGCATTTCCG 59.306 38.462 0.00 0.00 36.73 4.30
1530 1885 7.428826 AGAATATCTTTGCATTTCCGAAATCC 58.571 34.615 3.23 0.00 0.00 3.01
1542 1897 7.517259 GCATTTCCGAAATCCAGATAATTTTGC 60.517 37.037 3.23 0.00 0.00 3.68
1543 1898 5.514274 TCCGAAATCCAGATAATTTTGCC 57.486 39.130 0.00 0.00 0.00 4.52
1547 1902 7.451255 TCCGAAATCCAGATAATTTTGCCATAT 59.549 33.333 0.00 0.00 0.00 1.78
1548 1903 7.756722 CCGAAATCCAGATAATTTTGCCATATC 59.243 37.037 0.00 0.00 0.00 1.63
1565 2049 7.050377 TGCCATATCTTTAGAGAAACCTGAAG 58.950 38.462 0.00 0.00 35.07 3.02
1566 2050 7.051000 GCCATATCTTTAGAGAAACCTGAAGT 58.949 38.462 0.00 0.00 35.07 3.01
1567 2051 7.554476 GCCATATCTTTAGAGAAACCTGAAGTT 59.446 37.037 0.00 0.00 41.81 2.66
1586 2070 7.175104 TGAAGTTTAGGTCCTGAAATTATGCT 58.825 34.615 8.87 0.00 0.00 3.79
1602 2086 0.597118 TGCTTGGCACATTGCGAAAC 60.597 50.000 0.00 0.00 46.21 2.78
1603 2087 0.597118 GCTTGGCACATTGCGAAACA 60.597 50.000 0.00 0.00 46.21 2.83
1605 2089 1.522258 CTTGGCACATTGCGAAACAAC 59.478 47.619 0.00 0.00 46.21 3.32
1606 2090 0.457443 TGGCACATTGCGAAACAACA 59.543 45.000 0.00 0.00 46.21 3.33
1607 2091 0.852136 GGCACATTGCGAAACAACAC 59.148 50.000 0.00 0.00 46.21 3.32
1608 2092 0.498095 GCACATTGCGAAACAACACG 59.502 50.000 0.00 0.00 42.27 4.49
1623 2111 4.575885 ACAACACGCAGATACCAGTAATT 58.424 39.130 0.00 0.00 0.00 1.40
1734 2288 2.504244 GACTCTTCGGTCGCGGTG 60.504 66.667 6.13 0.00 0.00 4.94
1773 2327 4.473477 AGGCAAGTTACCTGTCTATGTC 57.527 45.455 0.00 0.00 35.72 3.06
1774 2328 4.097418 AGGCAAGTTACCTGTCTATGTCT 58.903 43.478 0.00 0.00 35.72 3.41
1775 2329 4.532521 AGGCAAGTTACCTGTCTATGTCTT 59.467 41.667 0.00 0.00 35.72 3.01
1776 2330 4.870991 GGCAAGTTACCTGTCTATGTCTTC 59.129 45.833 0.00 0.00 0.00 2.87
1777 2331 5.479306 GCAAGTTACCTGTCTATGTCTTCA 58.521 41.667 0.00 0.00 0.00 3.02
1778 2332 5.348997 GCAAGTTACCTGTCTATGTCTTCAC 59.651 44.000 0.00 0.00 0.00 3.18
1779 2333 6.455647 CAAGTTACCTGTCTATGTCTTCACA 58.544 40.000 0.00 0.00 36.78 3.58
1780 2334 6.665992 AGTTACCTGTCTATGTCTTCACAA 57.334 37.500 0.00 0.00 35.64 3.33
1783 2337 8.157476 AGTTACCTGTCTATGTCTTCACAAAAT 58.843 33.333 0.00 0.00 35.64 1.82
1797 2351 3.621268 TCACAAAATATACTCGCCAGCAC 59.379 43.478 0.00 0.00 0.00 4.40
1802 2356 6.317642 ACAAAATATACTCGCCAGCACAATAA 59.682 34.615 0.00 0.00 0.00 1.40
1829 2398 9.065798 GTAACTAGAAAGTAGTATCCCGATCTT 57.934 37.037 0.00 0.00 33.75 2.40
1847 2417 8.301002 CCCGATCTTAAATTTGTTTTGGAACTA 58.699 33.333 0.00 0.00 36.70 2.24
1848 2418 9.124807 CCGATCTTAAATTTGTTTTGGAACTAC 57.875 33.333 0.00 0.00 36.70 2.73
1857 2427 9.458374 AATTTGTTTTGGAACTACTGTATTTCG 57.542 29.630 10.56 0.00 36.70 3.46
1858 2428 7.556733 TTGTTTTGGAACTACTGTATTTCGT 57.443 32.000 10.56 0.00 36.70 3.85
1859 2429 8.659925 TTGTTTTGGAACTACTGTATTTCGTA 57.340 30.769 10.56 2.12 36.70 3.43
1860 2430 8.301730 TGTTTTGGAACTACTGTATTTCGTAG 57.698 34.615 10.56 0.00 39.14 3.51
1861 2431 8.143193 TGTTTTGGAACTACTGTATTTCGTAGA 58.857 33.333 10.56 0.00 37.22 2.59
1864 2434 7.876936 TGGAACTACTGTATTTCGTAGAGAT 57.123 36.000 10.56 0.00 38.43 2.75
1876 2446 9.411801 GTATTTCGTAGAGATGCATGAAATCTA 57.588 33.333 18.41 11.53 38.43 1.98
1900 2470 9.571810 CTAAGCAGACATATAGATGAATCAGTC 57.428 37.037 3.93 0.00 36.48 3.51
1901 2471 7.779754 AGCAGACATATAGATGAATCAGTCT 57.220 36.000 3.93 0.00 36.48 3.24
1906 2476 9.365906 AGACATATAGATGAATCAGTCTGAACT 57.634 33.333 6.64 0.00 36.48 3.01
1914 2484 9.956640 AGATGAATCAGTCTGAACTATTTCTTT 57.043 29.630 6.64 0.00 33.25 2.52
1967 2537 5.755409 TGAACTATTTCAGCTGAGGGTAA 57.245 39.130 17.43 8.82 36.79 2.85
1974 2544 7.770897 ACTATTTCAGCTGAGGGTAATTAGTTG 59.229 37.037 17.43 0.27 0.00 3.16
1985 2555 4.335594 GGGTAATTAGTTGCAGTGACATCC 59.664 45.833 0.00 0.00 0.00 3.51
2031 2601 1.985473 ATGAAGAAAGCACACCAGCA 58.015 45.000 0.00 0.00 36.85 4.41
2032 2602 1.985473 TGAAGAAAGCACACCAGCAT 58.015 45.000 0.00 0.00 36.85 3.79
2033 2603 1.610038 TGAAGAAAGCACACCAGCATG 59.390 47.619 0.00 0.00 36.85 4.06
2034 2604 1.610522 GAAGAAAGCACACCAGCATGT 59.389 47.619 0.00 0.00 36.85 3.21
2037 2607 4.220693 AGAAAGCACACCAGCATGTATA 57.779 40.909 0.00 0.00 36.85 1.47
2064 2634 2.202440 CGTACACTGACGGCCTCG 60.202 66.667 0.00 0.00 39.19 4.63
2074 2645 2.582436 CGGCCTCGTACCACCAAT 59.418 61.111 0.00 0.00 0.00 3.16
2075 2646 1.078708 CGGCCTCGTACCACCAATT 60.079 57.895 0.00 0.00 0.00 2.32
2076 2647 1.087771 CGGCCTCGTACCACCAATTC 61.088 60.000 0.00 0.00 0.00 2.17
2077 2648 0.252197 GGCCTCGTACCACCAATTCT 59.748 55.000 0.00 0.00 0.00 2.40
2078 2649 1.653151 GCCTCGTACCACCAATTCTC 58.347 55.000 0.00 0.00 0.00 2.87
2081 2652 3.522553 CCTCGTACCACCAATTCTCTTC 58.477 50.000 0.00 0.00 0.00 2.87
2086 2657 6.059484 TCGTACCACCAATTCTCTTCTTTTT 58.941 36.000 0.00 0.00 0.00 1.94
2117 2688 3.001634 CGCAATCGTTTCTGCATACATCT 59.998 43.478 0.00 0.00 38.52 2.90
2165 2736 1.160137 GAGGCAAAGACGTGCTGATT 58.840 50.000 0.00 0.00 44.31 2.57
2180 2751 2.002586 CTGATTGTGCTCGTCGGAAAT 58.997 47.619 0.00 0.00 0.00 2.17
2198 2769 5.121768 CGGAAATAAAACAGACCTCGTTGAT 59.878 40.000 0.00 0.00 0.00 2.57
2209 2780 1.534175 CCTCGTTGATCAGAGGTACGC 60.534 57.143 18.66 0.00 46.68 4.42
2211 2782 1.749063 TCGTTGATCAGAGGTACGCAT 59.251 47.619 11.17 0.00 32.65 4.73
2224 2799 9.403583 TCAGAGGTACGCATTATATACATATCA 57.596 33.333 0.00 0.00 0.00 2.15
2278 2853 1.243902 TCTTGGCGGTGGTTCATTTC 58.756 50.000 0.00 0.00 0.00 2.17
2283 2858 1.534729 GCGGTGGTTCATTTCCTTCT 58.465 50.000 0.00 0.00 0.00 2.85
2291 2866 6.106003 GTGGTTCATTTCCTTCTGTTTGTTT 58.894 36.000 0.00 0.00 0.00 2.83
2292 2867 6.593770 GTGGTTCATTTCCTTCTGTTTGTTTT 59.406 34.615 0.00 0.00 0.00 2.43
2293 2868 6.593382 TGGTTCATTTCCTTCTGTTTGTTTTG 59.407 34.615 0.00 0.00 0.00 2.44
2294 2869 6.593770 GGTTCATTTCCTTCTGTTTGTTTTGT 59.406 34.615 0.00 0.00 0.00 2.83
2296 2871 7.826260 TCATTTCCTTCTGTTTGTTTTGTTC 57.174 32.000 0.00 0.00 0.00 3.18
2297 2872 6.529829 TCATTTCCTTCTGTTTGTTTTGTTCG 59.470 34.615 0.00 0.00 0.00 3.95
2298 2873 3.765026 TCCTTCTGTTTGTTTTGTTCGC 58.235 40.909 0.00 0.00 0.00 4.70
2299 2874 2.857748 CCTTCTGTTTGTTTTGTTCGCC 59.142 45.455 0.00 0.00 0.00 5.54
2300 2875 3.428862 CCTTCTGTTTGTTTTGTTCGCCT 60.429 43.478 0.00 0.00 0.00 5.52
2301 2876 3.143807 TCTGTTTGTTTTGTTCGCCTG 57.856 42.857 0.00 0.00 0.00 4.85
2303 2878 3.191581 TCTGTTTGTTTTGTTCGCCTGAA 59.808 39.130 0.00 0.00 0.00 3.02
2311 2886 2.203084 TTCGCCTGAACGTTGCCA 60.203 55.556 5.00 0.00 0.00 4.92
2423 2998 3.490348 ACATCAAGGTTCTCCCAACTTG 58.510 45.455 0.00 0.00 41.14 3.16
2428 3003 4.775253 TCAAGGTTCTCCCAACTTGTTTTT 59.225 37.500 0.00 0.00 40.74 1.94
2464 3039 9.632807 CTCCCTCTGTAAAGAAATATAAGATCG 57.367 37.037 0.00 0.00 0.00 3.69
2465 3040 9.144298 TCCCTCTGTAAAGAAATATAAGATCGT 57.856 33.333 0.00 0.00 0.00 3.73
2466 3041 9.765795 CCCTCTGTAAAGAAATATAAGATCGTT 57.234 33.333 0.00 0.00 0.00 3.85
2485 3060 6.244552 TCGTTTAGATCACTAGGGAGTAGA 57.755 41.667 0.00 0.00 33.32 2.59
2486 3061 6.656902 TCGTTTAGATCACTAGGGAGTAGAA 58.343 40.000 0.00 0.00 33.32 2.10
2489 3064 7.446013 CGTTTAGATCACTAGGGAGTAGAATCT 59.554 40.741 0.00 0.00 37.92 2.40
2490 3065 9.796180 GTTTAGATCACTAGGGAGTAGAATCTA 57.204 37.037 0.00 0.00 36.75 1.98
2495 3070 9.528489 GATCACTAGGGAGTAGAATCTATTTCT 57.472 37.037 0.00 0.00 46.53 2.52
2497 3072 7.945664 TCACTAGGGAGTAGAATCTATTTCTCC 59.054 40.741 13.92 13.92 43.75 3.71
2500 3091 5.542251 AGGGAGTAGAATCTATTTCTCCAGC 59.458 44.000 20.30 9.29 43.75 4.85
2505 3096 7.810260 AGTAGAATCTATTTCTCCAGCCATTT 58.190 34.615 0.00 0.00 43.75 2.32
2510 3101 4.957954 TCTATTTCTCCAGCCATTTTGCAT 59.042 37.500 0.00 0.00 0.00 3.96
2516 3107 1.551430 CCAGCCATTTTGCATCTCCAA 59.449 47.619 0.00 0.00 0.00 3.53
2538 3133 0.606401 CCAGCCAAACATCTGACCGT 60.606 55.000 0.00 0.00 0.00 4.83
2540 3135 0.396435 AGCCAAACATCTGACCGTGA 59.604 50.000 0.00 0.00 0.00 4.35
2543 3138 2.034053 GCCAAACATCTGACCGTGAAAA 59.966 45.455 0.00 0.00 0.00 2.29
2546 3141 4.527564 CAAACATCTGACCGTGAAAACTC 58.472 43.478 0.00 0.00 0.00 3.01
2573 3171 3.726517 CTGCAGGCGTTGTTCCGG 61.727 66.667 5.57 0.00 0.00 5.14
2587 3185 4.485834 CCGGACGATCGCCACGAA 62.486 66.667 22.62 0.00 39.99 3.85
2591 3189 1.445582 GACGATCGCCACGAACCTT 60.446 57.895 16.60 0.00 39.99 3.50
2606 3204 1.227263 CCTTCCTGGTATGGACGCG 60.227 63.158 3.53 3.53 35.58 6.01
2654 3252 1.450312 GGACATCAACCTGAGGCCG 60.450 63.158 0.00 0.00 30.14 6.13
2714 3312 3.566130 GCAGAAAGCAGGAGGATGT 57.434 52.632 0.00 0.00 44.79 3.06
2751 3349 9.495572 CTTTGTGTTCTTTTATTAGAGGAGAGT 57.504 33.333 0.00 0.00 0.00 3.24
2754 3352 9.273016 TGTGTTCTTTTATTAGAGGAGAGTTTG 57.727 33.333 0.00 0.00 0.00 2.93
2755 3353 8.231161 GTGTTCTTTTATTAGAGGAGAGTTTGC 58.769 37.037 0.00 0.00 0.00 3.68
2756 3354 7.117812 TGTTCTTTTATTAGAGGAGAGTTTGCG 59.882 37.037 0.00 0.00 0.00 4.85
2758 3356 2.990066 ATTAGAGGAGAGTTTGCGGG 57.010 50.000 0.00 0.00 0.00 6.13
2759 3357 0.249398 TTAGAGGAGAGTTTGCGGGC 59.751 55.000 0.00 0.00 0.00 6.13
2760 3358 0.902984 TAGAGGAGAGTTTGCGGGCA 60.903 55.000 0.00 0.00 0.00 5.36
2761 3359 1.743252 GAGGAGAGTTTGCGGGCAG 60.743 63.158 0.00 0.00 0.00 4.85
2762 3360 2.172483 GAGGAGAGTTTGCGGGCAGA 62.172 60.000 0.00 0.00 0.00 4.26
2764 3362 1.301716 GAGAGTTTGCGGGCAGACA 60.302 57.895 15.48 0.00 34.04 3.41
2784 3413 6.805271 CAGACAGAGCAAGAATGTAATTTTGG 59.195 38.462 0.00 0.00 36.07 3.28
2812 3441 3.264947 CAGATTGCGGACAGAGAAATGA 58.735 45.455 0.00 0.00 0.00 2.57
2813 3442 3.686241 CAGATTGCGGACAGAGAAATGAA 59.314 43.478 0.00 0.00 0.00 2.57
2814 3443 4.154737 CAGATTGCGGACAGAGAAATGAAA 59.845 41.667 0.00 0.00 0.00 2.69
2837 3466 3.806316 AATTGTTTAGGCGTGAGAACG 57.194 42.857 0.00 0.00 0.00 3.95
2934 3563 5.305585 ACTACAACGACTTGGTGATGATTT 58.694 37.500 0.00 0.00 0.00 2.17
2935 3564 4.749245 ACAACGACTTGGTGATGATTTC 57.251 40.909 0.00 0.00 0.00 2.17
2937 3566 2.711542 ACGACTTGGTGATGATTTCCC 58.288 47.619 0.00 0.00 0.00 3.97
2943 3572 3.364460 TGGTGATGATTTCCCGAATGT 57.636 42.857 0.00 0.00 0.00 2.71
2947 3576 2.426738 TGATGATTTCCCGAATGTTGCC 59.573 45.455 0.00 0.00 0.00 4.52
2948 3577 1.181786 TGATTTCCCGAATGTTGCCC 58.818 50.000 0.00 0.00 0.00 5.36
2958 3587 1.065551 GAATGTTGCCCACTAATCGGC 59.934 52.381 0.00 0.00 45.92 5.54
2968 3597 0.175073 ACTAATCGGCAAGGACGGTC 59.825 55.000 0.00 0.00 33.33 4.79
2988 3617 0.666577 AGTTACTCGTGTGCCTTCGC 60.667 55.000 0.00 0.00 0.00 4.70
3078 5312 7.541122 ACTCTTCTTTTCACAGAACTACAAC 57.459 36.000 0.00 0.00 0.00 3.32
3081 5315 6.538742 TCTTCTTTTCACAGAACTACAACAGG 59.461 38.462 0.00 0.00 0.00 4.00
3103 5337 0.618458 AAACGCCAGCCTGATCCTAA 59.382 50.000 0.00 0.00 0.00 2.69
3302 5549 4.491924 CGTAATCAAGCACGGTGACATAAC 60.492 45.833 13.29 0.00 34.57 1.89
3352 5599 6.086222 ACTTTTGACTTATAATGCACTTGCG 58.914 36.000 0.00 0.00 45.83 4.85
3359 5606 2.917701 TAATGCACTTGCGAATGGTG 57.082 45.000 0.00 0.00 45.83 4.17
3428 5683 2.810400 GCCTACTTCAGCCTGTTGTGAA 60.810 50.000 0.00 0.00 0.00 3.18
3432 5687 3.825328 ACTTCAGCCTGTTGTGAAATCT 58.175 40.909 0.00 0.00 32.36 2.40
3443 5698 6.039270 CCTGTTGTGAAATCTTCCTGTTTACA 59.961 38.462 0.00 0.00 0.00 2.41
3445 5700 7.254852 TGTTGTGAAATCTTCCTGTTTACAAC 58.745 34.615 13.38 13.38 43.19 3.32
3468 5723 4.623167 CGACATGAGAACACTTCTTGGTAG 59.377 45.833 0.00 0.00 40.87 3.18
3481 5736 6.652481 CACTTCTTGGTAGTCACTTCATGATT 59.348 38.462 0.00 0.00 40.28 2.57
3484 5739 4.908601 TGGTAGTCACTTCATGATTGGT 57.091 40.909 0.00 0.00 40.28 3.67
3490 5745 2.239654 TCACTTCATGATTGGTCCCTCC 59.760 50.000 0.00 0.00 29.99 4.30
3525 5780 1.161113 AACCCTACCCAGTGAGGCT 59.839 57.895 0.00 0.00 35.39 4.58
3526 5781 0.910088 AACCCTACCCAGTGAGGCTC 60.910 60.000 7.79 7.79 35.39 4.70
3527 5782 1.002274 CCCTACCCAGTGAGGCTCT 59.998 63.158 16.72 0.00 35.39 4.09
3528 5783 1.045911 CCCTACCCAGTGAGGCTCTC 61.046 65.000 16.72 12.49 35.39 3.20
3572 5827 9.788960 GATTGAACAAACAATAATACTTCCTCC 57.211 33.333 0.00 0.00 40.03 4.30
3573 5828 7.372451 TGAACAAACAATAATACTTCCTCCG 57.628 36.000 0.00 0.00 0.00 4.63
3574 5829 6.938030 TGAACAAACAATAATACTTCCTCCGT 59.062 34.615 0.00 0.00 0.00 4.69
3575 5830 6.980051 ACAAACAATAATACTTCCTCCGTC 57.020 37.500 0.00 0.00 0.00 4.79
3576 5831 6.469410 ACAAACAATAATACTTCCTCCGTCA 58.531 36.000 0.00 0.00 0.00 4.35
3577 5832 6.370718 ACAAACAATAATACTTCCTCCGTCAC 59.629 38.462 0.00 0.00 0.00 3.67
3578 5833 5.670792 ACAATAATACTTCCTCCGTCACA 57.329 39.130 0.00 0.00 0.00 3.58
3579 5834 6.045072 ACAATAATACTTCCTCCGTCACAA 57.955 37.500 0.00 0.00 0.00 3.33
3580 5835 6.469410 ACAATAATACTTCCTCCGTCACAAA 58.531 36.000 0.00 0.00 0.00 2.83
3581 5836 6.938030 ACAATAATACTTCCTCCGTCACAAAA 59.062 34.615 0.00 0.00 0.00 2.44
3582 5837 7.610305 ACAATAATACTTCCTCCGTCACAAAAT 59.390 33.333 0.00 0.00 0.00 1.82
3583 5838 5.880054 AATACTTCCTCCGTCACAAAATG 57.120 39.130 0.00 0.00 0.00 2.32
3584 5839 3.208747 ACTTCCTCCGTCACAAAATGT 57.791 42.857 0.00 0.00 0.00 2.71
3585 5840 4.345859 ACTTCCTCCGTCACAAAATGTA 57.654 40.909 0.00 0.00 0.00 2.29
3586 5841 4.710324 ACTTCCTCCGTCACAAAATGTAA 58.290 39.130 0.00 0.00 0.00 2.41
3587 5842 4.755123 ACTTCCTCCGTCACAAAATGTAAG 59.245 41.667 0.00 0.00 0.00 2.34
3588 5843 4.610605 TCCTCCGTCACAAAATGTAAGA 57.389 40.909 0.00 0.00 0.00 2.10
3589 5844 4.312443 TCCTCCGTCACAAAATGTAAGAC 58.688 43.478 0.00 0.00 0.00 3.01
3590 5845 3.122948 CCTCCGTCACAAAATGTAAGACG 59.877 47.826 13.31 13.31 42.62 4.18
3591 5846 2.477375 TCCGTCACAAAATGTAAGACGC 59.523 45.455 14.31 0.00 42.05 5.19
3592 5847 2.478894 CCGTCACAAAATGTAAGACGCT 59.521 45.455 14.31 0.00 42.05 5.07
3593 5848 3.059188 CCGTCACAAAATGTAAGACGCTT 60.059 43.478 14.31 0.00 42.05 4.68
3594 5849 4.523813 CGTCACAAAATGTAAGACGCTTT 58.476 39.130 9.44 0.00 39.00 3.51
3595 5850 4.967575 CGTCACAAAATGTAAGACGCTTTT 59.032 37.500 9.44 0.00 39.00 2.27
3596 5851 5.454232 CGTCACAAAATGTAAGACGCTTTTT 59.546 36.000 9.44 0.00 39.00 1.94
3597 5852 6.629649 CGTCACAAAATGTAAGACGCTTTTTA 59.370 34.615 9.44 0.00 39.00 1.52
3598 5853 7.164498 CGTCACAAAATGTAAGACGCTTTTTAA 59.836 33.333 9.44 0.00 39.00 1.52
3599 5854 8.257166 GTCACAAAATGTAAGACGCTTTTTAAC 58.743 33.333 0.00 0.00 0.00 2.01
3600 5855 7.968956 TCACAAAATGTAAGACGCTTTTTAACA 59.031 29.630 0.00 0.00 0.00 2.41
3601 5856 8.047859 CACAAAATGTAAGACGCTTTTTAACAC 58.952 33.333 0.00 0.00 0.00 3.32
3602 5857 7.971722 ACAAAATGTAAGACGCTTTTTAACACT 59.028 29.630 0.00 0.00 0.00 3.55
3603 5858 9.440784 CAAAATGTAAGACGCTTTTTAACACTA 57.559 29.630 0.00 0.00 0.00 2.74
3604 5859 8.998558 AAATGTAAGACGCTTTTTAACACTAC 57.001 30.769 0.00 0.00 0.00 2.73
3605 5860 7.718272 ATGTAAGACGCTTTTTAACACTACA 57.282 32.000 0.00 0.00 0.00 2.74
3606 5861 6.936374 TGTAAGACGCTTTTTAACACTACAC 58.064 36.000 0.00 0.00 0.00 2.90
3607 5862 6.757947 TGTAAGACGCTTTTTAACACTACACT 59.242 34.615 0.00 0.00 0.00 3.55
3608 5863 7.920151 TGTAAGACGCTTTTTAACACTACACTA 59.080 33.333 0.00 0.00 0.00 2.74
3609 5864 7.404139 AAGACGCTTTTTAACACTACACTAG 57.596 36.000 0.00 0.00 0.00 2.57
3610 5865 6.510536 AGACGCTTTTTAACACTACACTAGT 58.489 36.000 0.00 0.00 40.28 2.57
3622 5877 4.365723 ACTACACTAGTGTCAACAAACGG 58.634 43.478 31.11 13.03 43.74 4.44
3623 5878 1.937899 ACACTAGTGTCAACAAACGGC 59.062 47.619 22.95 0.00 40.24 5.68
3624 5879 2.210116 CACTAGTGTCAACAAACGGCT 58.790 47.619 15.06 0.00 0.00 5.52
3625 5880 2.612212 CACTAGTGTCAACAAACGGCTT 59.388 45.455 15.06 0.00 0.00 4.35
3626 5881 3.805422 CACTAGTGTCAACAAACGGCTTA 59.195 43.478 15.06 0.00 0.00 3.09
3627 5882 3.805971 ACTAGTGTCAACAAACGGCTTAC 59.194 43.478 0.00 0.00 0.00 2.34
3628 5883 2.634600 AGTGTCAACAAACGGCTTACA 58.365 42.857 0.00 0.00 0.00 2.41
3629 5884 3.211045 AGTGTCAACAAACGGCTTACAT 58.789 40.909 0.00 0.00 0.00 2.29
3630 5885 3.630312 AGTGTCAACAAACGGCTTACATT 59.370 39.130 0.00 0.00 0.00 2.71
3631 5886 4.817464 AGTGTCAACAAACGGCTTACATTA 59.183 37.500 0.00 0.00 0.00 1.90
3632 5887 5.297278 AGTGTCAACAAACGGCTTACATTAA 59.703 36.000 0.00 0.00 0.00 1.40
3633 5888 5.623673 GTGTCAACAAACGGCTTACATTAAG 59.376 40.000 0.00 0.00 38.80 1.85
3634 5889 5.151389 GTCAACAAACGGCTTACATTAAGG 58.849 41.667 0.00 0.00 36.31 2.69
3635 5890 4.216687 TCAACAAACGGCTTACATTAAGGG 59.783 41.667 0.00 0.00 36.31 3.95
3636 5891 4.023726 ACAAACGGCTTACATTAAGGGA 57.976 40.909 0.00 0.00 36.31 4.20
3637 5892 3.754850 ACAAACGGCTTACATTAAGGGAC 59.245 43.478 0.00 0.00 36.31 4.46
3638 5893 2.304751 ACGGCTTACATTAAGGGACG 57.695 50.000 0.00 0.00 36.31 4.79
3639 5894 1.134610 ACGGCTTACATTAAGGGACGG 60.135 52.381 0.00 0.00 36.31 4.79
3640 5895 1.137479 CGGCTTACATTAAGGGACGGA 59.863 52.381 0.00 0.00 36.31 4.69
3641 5896 2.802057 CGGCTTACATTAAGGGACGGAG 60.802 54.545 0.00 0.00 36.31 4.63
3642 5897 2.484947 GGCTTACATTAAGGGACGGAGG 60.485 54.545 0.00 0.00 36.31 4.30
3643 5898 2.484947 GCTTACATTAAGGGACGGAGGG 60.485 54.545 0.00 0.00 36.31 4.30
3644 5899 2.852714 TACATTAAGGGACGGAGGGA 57.147 50.000 0.00 0.00 0.00 4.20
3645 5900 1.497161 ACATTAAGGGACGGAGGGAG 58.503 55.000 0.00 0.00 0.00 4.30
3679 5934 9.388506 CTTTCAATCATAGAACACTAACCAGAT 57.611 33.333 0.00 0.00 0.00 2.90
3685 5940 7.963532 TCATAGAACACTAACCAGATATTCCC 58.036 38.462 0.00 0.00 0.00 3.97
3686 5941 7.789831 TCATAGAACACTAACCAGATATTCCCT 59.210 37.037 0.00 0.00 0.00 4.20
3687 5942 6.487299 AGAACACTAACCAGATATTCCCTC 57.513 41.667 0.00 0.00 0.00 4.30
3688 5943 5.367060 AGAACACTAACCAGATATTCCCTCC 59.633 44.000 0.00 0.00 0.00 4.30
3689 5944 3.641906 ACACTAACCAGATATTCCCTCCG 59.358 47.826 0.00 0.00 0.00 4.63
3690 5945 3.641906 CACTAACCAGATATTCCCTCCGT 59.358 47.826 0.00 0.00 0.00 4.69
3691 5946 3.896272 ACTAACCAGATATTCCCTCCGTC 59.104 47.826 0.00 0.00 0.00 4.79
3692 5947 1.718280 ACCAGATATTCCCTCCGTCC 58.282 55.000 0.00 0.00 0.00 4.79
3693 5948 0.977395 CCAGATATTCCCTCCGTCCC 59.023 60.000 0.00 0.00 0.00 4.46
3694 5949 1.717032 CAGATATTCCCTCCGTCCCA 58.283 55.000 0.00 0.00 0.00 4.37
3695 5950 2.047061 CAGATATTCCCTCCGTCCCAA 58.953 52.381 0.00 0.00 0.00 4.12
3696 5951 2.438021 CAGATATTCCCTCCGTCCCAAA 59.562 50.000 0.00 0.00 0.00 3.28
3697 5952 3.118038 CAGATATTCCCTCCGTCCCAAAA 60.118 47.826 0.00 0.00 0.00 2.44
3698 5953 3.722101 AGATATTCCCTCCGTCCCAAAAT 59.278 43.478 0.00 0.00 0.00 1.82
3699 5954 4.911522 AGATATTCCCTCCGTCCCAAAATA 59.088 41.667 0.00 0.00 0.00 1.40
3700 5955 5.371472 AGATATTCCCTCCGTCCCAAAATAA 59.629 40.000 0.00 0.00 0.00 1.40
3701 5956 3.359695 TTCCCTCCGTCCCAAAATAAG 57.640 47.619 0.00 0.00 0.00 1.73
3702 5957 2.271777 TCCCTCCGTCCCAAAATAAGT 58.728 47.619 0.00 0.00 0.00 2.24
3703 5958 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3704 5959 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3705 5960 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3706 5961 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
3707 5962 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
3708 5963 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
3709 5964 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3710 5965 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3711 5966 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3712 5967 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3713 5968 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3714 5969 7.041644 CGTCCCAAAATAAGTGACTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
3715 5970 8.793592 GTCCCAAAATAAGTGACTCAACTTTAT 58.206 33.333 0.00 0.00 40.77 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.493950 GATCGATGGCGCCTGAACAG 61.494 60.000 29.70 12.85 37.46 3.16
9 10 2.418777 CTGATCGATGGCGCCTGA 59.581 61.111 29.70 22.36 37.46 3.86
11 12 4.615815 GGCTGATCGATGGCGCCT 62.616 66.667 29.70 13.55 37.76 5.52
14 15 2.356793 GGAGGCTGATCGATGGCG 60.357 66.667 0.54 0.00 39.35 5.69
16 17 0.178767 TTGTGGAGGCTGATCGATGG 59.821 55.000 0.54 0.00 0.00 3.51
59 60 3.634397 TCACCATGTGAAGATCCTTCC 57.366 47.619 4.48 0.00 39.78 3.46
60 61 3.806521 CGATCACCATGTGAAGATCCTTC 59.193 47.826 0.46 0.00 45.96 3.46
77 78 4.157105 TCGACAAACCTTACTCATCGATCA 59.843 41.667 0.00 0.00 32.61 2.92
95 96 1.003839 GGCAACATCACCCTCGACA 60.004 57.895 0.00 0.00 0.00 4.35
150 151 2.560981 CCCATCCCTAACACAAACCAAC 59.439 50.000 0.00 0.00 0.00 3.77
151 152 2.178106 ACCCATCCCTAACACAAACCAA 59.822 45.455 0.00 0.00 0.00 3.67
152 153 1.783979 ACCCATCCCTAACACAAACCA 59.216 47.619 0.00 0.00 0.00 3.67
160 161 4.020543 TGCAACAAATACCCATCCCTAAC 58.979 43.478 0.00 0.00 0.00 2.34
214 215 3.782046 ACGGAACTAAAGTCATCCATCG 58.218 45.455 2.61 0.00 32.08 3.84
216 217 5.670792 TGTACGGAACTAAAGTCATCCAT 57.329 39.130 2.61 0.00 32.08 3.41
260 261 1.374252 AAATGCCGAAGCGAGTCGT 60.374 52.632 15.08 0.00 44.31 4.34
292 293 1.735571 GCTGCAAATGCCCTTTTCATG 59.264 47.619 2.46 0.00 41.18 3.07
295 296 3.256558 CTTAGCTGCAAATGCCCTTTTC 58.743 45.455 1.02 0.00 41.18 2.29
296 297 2.634453 ACTTAGCTGCAAATGCCCTTTT 59.366 40.909 1.02 0.00 41.18 2.27
303 304 6.775088 TCGAAAGATAACTTAGCTGCAAATG 58.225 36.000 1.02 0.00 35.05 2.32
337 338 6.422776 TTGCTGAGAGGTCGAAAATATTTC 57.577 37.500 0.10 0.00 0.00 2.17
339 340 5.235186 CGATTGCTGAGAGGTCGAAAATATT 59.765 40.000 0.00 0.00 34.46 1.28
340 341 4.747108 CGATTGCTGAGAGGTCGAAAATAT 59.253 41.667 0.00 0.00 34.46 1.28
341 342 4.112634 CGATTGCTGAGAGGTCGAAAATA 58.887 43.478 0.00 0.00 34.46 1.40
347 353 1.671328 TCTACGATTGCTGAGAGGTCG 59.329 52.381 0.00 0.00 38.21 4.79
348 354 3.784701 TTCTACGATTGCTGAGAGGTC 57.215 47.619 0.00 0.00 0.00 3.85
350 356 6.428385 AATTTTTCTACGATTGCTGAGAGG 57.572 37.500 0.00 0.00 0.00 3.69
353 359 8.660373 AGTCTAAATTTTTCTACGATTGCTGAG 58.340 33.333 0.00 0.00 0.00 3.35
368 374 6.893554 GGTGGGGGTGTATTAGTCTAAATTTT 59.106 38.462 0.00 0.00 0.00 1.82
378 384 0.625091 TGGGGGTGGGGGTGTATTAG 60.625 60.000 0.00 0.00 0.00 1.73
395 401 3.944250 ATGGCAAAGCTCGGGGTGG 62.944 63.158 0.00 0.00 0.00 4.61
397 403 1.228862 AAATGGCAAAGCTCGGGGT 60.229 52.632 0.00 0.00 0.00 4.95
398 404 1.216178 CAAATGGCAAAGCTCGGGG 59.784 57.895 0.00 0.00 0.00 5.73
400 406 0.109132 GTCCAAATGGCAAAGCTCGG 60.109 55.000 0.00 0.00 34.44 4.63
401 407 0.597568 TGTCCAAATGGCAAAGCTCG 59.402 50.000 0.00 0.00 34.44 5.03
414 527 6.778069 TGGTATAACAACCTGATTTTGTCCAA 59.222 34.615 0.00 0.00 40.44 3.53
424 537 6.056090 TGTTGCTATGGTATAACAACCTGA 57.944 37.500 0.00 0.00 39.83 3.86
443 556 2.437200 ACGGGAAATTGCACATGTTG 57.563 45.000 0.00 0.00 0.00 3.33
445 558 4.279671 TCTTAAACGGGAAATTGCACATGT 59.720 37.500 0.00 0.00 0.00 3.21
446 559 4.804108 TCTTAAACGGGAAATTGCACATG 58.196 39.130 0.00 0.00 0.00 3.21
447 560 4.764823 TCTCTTAAACGGGAAATTGCACAT 59.235 37.500 0.00 0.00 0.00 3.21
448 561 4.138290 TCTCTTAAACGGGAAATTGCACA 58.862 39.130 0.00 0.00 0.00 4.57
449 562 4.759516 TCTCTTAAACGGGAAATTGCAC 57.240 40.909 0.00 0.00 0.00 4.57
450 563 4.580995 TGTTCTCTTAAACGGGAAATTGCA 59.419 37.500 0.00 0.00 31.58 4.08
451 564 5.048991 TCTGTTCTCTTAAACGGGAAATTGC 60.049 40.000 0.00 0.00 36.39 3.56
452 565 6.348540 CCTCTGTTCTCTTAAACGGGAAATTG 60.349 42.308 0.00 0.00 36.39 2.32
454 567 5.012768 TCCTCTGTTCTCTTAAACGGGAAAT 59.987 40.000 0.00 0.00 36.39 2.17
455 568 4.345837 TCCTCTGTTCTCTTAAACGGGAAA 59.654 41.667 0.00 0.00 36.39 3.13
469 582 2.100605 AAACATCGCCTCCTCTGTTC 57.899 50.000 0.00 0.00 31.73 3.18
481 594 8.338259 TCTTCTTCTTCTTCTTTCAAAACATCG 58.662 33.333 0.00 0.00 0.00 3.84
489 602 9.323985 CTTCTTCTTCTTCTTCTTCTTCTTTCA 57.676 33.333 0.00 0.00 0.00 2.69
490 603 9.541143 TCTTCTTCTTCTTCTTCTTCTTCTTTC 57.459 33.333 0.00 0.00 0.00 2.62
500 613 6.697892 TCGTTGTCTTCTTCTTCTTCTTCTTC 59.302 38.462 0.00 0.00 0.00 2.87
505 618 4.623002 GGTCGTTGTCTTCTTCTTCTTCT 58.377 43.478 0.00 0.00 0.00 2.85
507 620 3.067742 TCGGTCGTTGTCTTCTTCTTCTT 59.932 43.478 0.00 0.00 0.00 2.52
508 621 2.621998 TCGGTCGTTGTCTTCTTCTTCT 59.378 45.455 0.00 0.00 0.00 2.85
511 624 4.008330 TCTATCGGTCGTTGTCTTCTTCT 58.992 43.478 0.00 0.00 0.00 2.85
514 627 3.427773 GCTTCTATCGGTCGTTGTCTTCT 60.428 47.826 0.00 0.00 0.00 2.85
515 628 2.853003 GCTTCTATCGGTCGTTGTCTTC 59.147 50.000 0.00 0.00 0.00 2.87
516 629 2.731341 CGCTTCTATCGGTCGTTGTCTT 60.731 50.000 0.00 0.00 0.00 3.01
517 630 1.202154 CGCTTCTATCGGTCGTTGTCT 60.202 52.381 0.00 0.00 0.00 3.41
518 631 1.189403 CGCTTCTATCGGTCGTTGTC 58.811 55.000 0.00 0.00 0.00 3.18
519 632 0.179145 CCGCTTCTATCGGTCGTTGT 60.179 55.000 0.00 0.00 41.85 3.32
520 633 0.870307 CCCGCTTCTATCGGTCGTTG 60.870 60.000 0.66 0.00 45.09 4.10
521 634 1.318158 ACCCGCTTCTATCGGTCGTT 61.318 55.000 0.66 0.00 45.09 3.85
522 635 1.751927 ACCCGCTTCTATCGGTCGT 60.752 57.895 0.66 0.00 45.09 4.34
523 636 1.299165 CACCCGCTTCTATCGGTCG 60.299 63.158 0.66 0.00 45.09 4.79
524 637 0.248949 GTCACCCGCTTCTATCGGTC 60.249 60.000 0.66 0.00 45.09 4.79
525 638 0.968901 TGTCACCCGCTTCTATCGGT 60.969 55.000 0.66 0.00 45.09 4.69
526 639 0.174845 TTGTCACCCGCTTCTATCGG 59.825 55.000 0.00 0.00 46.05 4.18
527 640 1.278238 GTTGTCACCCGCTTCTATCG 58.722 55.000 0.00 0.00 0.00 2.92
528 641 2.380084 TGTTGTCACCCGCTTCTATC 57.620 50.000 0.00 0.00 0.00 2.08
529 642 2.027192 ACATGTTGTCACCCGCTTCTAT 60.027 45.455 0.00 0.00 0.00 1.98
530 643 1.346395 ACATGTTGTCACCCGCTTCTA 59.654 47.619 0.00 0.00 0.00 2.10
531 644 0.108585 ACATGTTGTCACCCGCTTCT 59.891 50.000 0.00 0.00 0.00 2.85
532 645 0.238289 CACATGTTGTCACCCGCTTC 59.762 55.000 0.00 0.00 0.00 3.86
533 646 1.172180 CCACATGTTGTCACCCGCTT 61.172 55.000 0.00 0.00 0.00 4.68
534 647 1.600636 CCACATGTTGTCACCCGCT 60.601 57.895 0.00 0.00 0.00 5.52
535 648 0.604243 TACCACATGTTGTCACCCGC 60.604 55.000 5.74 0.00 0.00 6.13
536 649 1.885560 TTACCACATGTTGTCACCCG 58.114 50.000 5.74 0.00 0.00 5.28
537 650 3.823873 TCATTTACCACATGTTGTCACCC 59.176 43.478 5.74 0.00 0.00 4.61
538 651 5.446143 TTCATTTACCACATGTTGTCACC 57.554 39.130 5.74 0.00 0.00 4.02
539 652 5.794945 CGATTCATTTACCACATGTTGTCAC 59.205 40.000 5.74 0.00 0.00 3.67
540 653 5.703130 TCGATTCATTTACCACATGTTGTCA 59.297 36.000 5.74 0.00 0.00 3.58
541 654 6.021596 GTCGATTCATTTACCACATGTTGTC 58.978 40.000 5.74 0.00 0.00 3.18
548 661 2.997303 CCGTGTCGATTCATTTACCACA 59.003 45.455 0.00 0.00 0.00 4.17
553 666 5.467399 AGTTTTGTCCGTGTCGATTCATTTA 59.533 36.000 0.00 0.00 0.00 1.40
560 673 0.865769 GCAGTTTTGTCCGTGTCGAT 59.134 50.000 0.00 0.00 0.00 3.59
563 676 1.859998 GCTTGCAGTTTTGTCCGTGTC 60.860 52.381 0.00 0.00 0.00 3.67
564 677 0.100503 GCTTGCAGTTTTGTCCGTGT 59.899 50.000 0.00 0.00 0.00 4.49
565 678 0.929824 CGCTTGCAGTTTTGTCCGTG 60.930 55.000 0.00 0.00 0.00 4.94
566 679 1.355210 CGCTTGCAGTTTTGTCCGT 59.645 52.632 0.00 0.00 0.00 4.69
567 680 0.657368 GACGCTTGCAGTTTTGTCCG 60.657 55.000 0.00 0.00 0.00 4.79
568 681 0.663153 AGACGCTTGCAGTTTTGTCC 59.337 50.000 0.00 0.00 0.00 4.02
582 705 0.790814 GACCTAACTGCAACAGACGC 59.209 55.000 0.78 0.00 35.18 5.19
586 709 2.162716 GGCGACCTAACTGCAACAG 58.837 57.895 0.00 0.00 37.52 3.16
622 745 8.488764 GTTCGACATAAATCCAAGCTAGTAATC 58.511 37.037 0.00 0.00 0.00 1.75
645 781 0.673985 GCACTCCCCCTGTTTTGTTC 59.326 55.000 0.00 0.00 0.00 3.18
652 788 2.526873 ACGAAGCACTCCCCCTGT 60.527 61.111 0.00 0.00 0.00 4.00
653 789 2.046892 CACGAAGCACTCCCCCTG 60.047 66.667 0.00 0.00 0.00 4.45
654 790 3.322466 CCACGAAGCACTCCCCCT 61.322 66.667 0.00 0.00 0.00 4.79
657 793 3.842925 TTGGCCACGAAGCACTCCC 62.843 63.158 3.88 0.00 0.00 4.30
658 794 2.281484 TTGGCCACGAAGCACTCC 60.281 61.111 3.88 0.00 0.00 3.85
659 795 2.328099 CCTTGGCCACGAAGCACTC 61.328 63.158 11.54 0.00 0.00 3.51
689 872 7.920682 TCCTTGAAAGTTTGTATTCTTTCTTGC 59.079 33.333 15.33 0.00 45.36 4.01
710 894 8.021898 ACTACTACTACTACTCCTACTCCTTG 57.978 42.308 0.00 0.00 0.00 3.61
718 902 9.777297 GCAAATACTACTACTACTACTACTCCT 57.223 37.037 0.00 0.00 0.00 3.69
719 903 9.553064 TGCAAATACTACTACTACTACTACTCC 57.447 37.037 0.00 0.00 0.00 3.85
724 908 8.848182 GTCCATGCAAATACTACTACTACTACT 58.152 37.037 0.00 0.00 0.00 2.57
725 909 7.802251 CGTCCATGCAAATACTACTACTACTAC 59.198 40.741 0.00 0.00 0.00 2.73
726 910 7.040892 CCGTCCATGCAAATACTACTACTACTA 60.041 40.741 0.00 0.00 0.00 1.82
727 911 6.238953 CCGTCCATGCAAATACTACTACTACT 60.239 42.308 0.00 0.00 0.00 2.57
728 912 5.919141 CCGTCCATGCAAATACTACTACTAC 59.081 44.000 0.00 0.00 0.00 2.73
729 913 5.829391 TCCGTCCATGCAAATACTACTACTA 59.171 40.000 0.00 0.00 0.00 1.82
730 914 4.647853 TCCGTCCATGCAAATACTACTACT 59.352 41.667 0.00 0.00 0.00 2.57
731 915 4.940463 TCCGTCCATGCAAATACTACTAC 58.060 43.478 0.00 0.00 0.00 2.73
732 916 5.510690 CCATCCGTCCATGCAAATACTACTA 60.511 44.000 0.00 0.00 0.00 1.82
758 942 2.279918 AGTCCCGTGTGTTGACGC 60.280 61.111 0.00 0.00 38.05 5.19
796 980 2.322830 GGGGCGACTTTGGACGTTC 61.323 63.158 0.00 0.00 33.61 3.95
813 997 1.823169 TTGAACGGAGAAGGGGACGG 61.823 60.000 0.00 0.00 0.00 4.79
815 999 1.809684 CTTTGAACGGAGAAGGGGAC 58.190 55.000 0.00 0.00 0.00 4.46
842 1026 3.591023 GGACGGAAGAAGAAGAAGAAGG 58.409 50.000 0.00 0.00 0.00 3.46
856 1040 2.586293 GGAAAGGGGACGGACGGAA 61.586 63.158 0.00 0.00 0.00 4.30
857 1041 2.999063 GGAAAGGGGACGGACGGA 60.999 66.667 0.00 0.00 0.00 4.69
858 1042 3.315949 TGGAAAGGGGACGGACGG 61.316 66.667 0.00 0.00 0.00 4.79
859 1043 2.047560 GTGGAAAGGGGACGGACG 60.048 66.667 0.00 0.00 0.00 4.79
860 1044 1.003718 CAGTGGAAAGGGGACGGAC 60.004 63.158 0.00 0.00 0.00 4.79
861 1045 2.221299 CCAGTGGAAAGGGGACGGA 61.221 63.158 1.68 0.00 0.00 4.69
862 1046 2.064242 AACCAGTGGAAAGGGGACGG 62.064 60.000 18.40 0.00 0.00 4.79
893 1077 0.179084 TTTGGATGCTCGATCGGGTC 60.179 55.000 17.85 6.97 30.87 4.46
948 1168 2.645567 CTAGTCGGGCGATGCGAT 59.354 61.111 0.00 0.00 0.00 4.58
949 1169 4.266070 GCTAGTCGGGCGATGCGA 62.266 66.667 0.00 0.00 0.00 5.10
950 1170 2.788172 CTAGCTAGTCGGGCGATGCG 62.788 65.000 12.92 0.00 34.52 4.73
951 1171 1.081108 CTAGCTAGTCGGGCGATGC 60.081 63.158 12.92 0.00 34.52 3.91
952 1172 1.081108 GCTAGCTAGTCGGGCGATG 60.081 63.158 21.62 0.00 34.52 3.84
1133 1353 2.744202 GGAGCTTTGCAAATCGAAGAGA 59.256 45.455 13.23 0.00 43.63 3.10
1206 1440 1.964891 CACACAGAGCCACAGCAGG 60.965 63.158 0.00 0.00 43.56 4.85
1290 1524 1.694150 ACCATCGCATACCATAGCTGT 59.306 47.619 0.00 0.00 0.00 4.40
1305 1539 1.363744 CAGCTCAACGAGGAACCATC 58.636 55.000 0.00 0.00 0.00 3.51
1308 1542 2.035442 GGCAGCTCAACGAGGAACC 61.035 63.158 0.00 0.00 0.00 3.62
1313 1585 0.947244 AAACAAGGCAGCTCAACGAG 59.053 50.000 0.00 0.00 0.00 4.18
1387 1659 4.177026 AGCATCGATGTGTCAGAGTTTAC 58.823 43.478 25.47 5.12 0.00 2.01
1392 1664 1.326852 GCAAGCATCGATGTGTCAGAG 59.673 52.381 25.47 10.57 0.00 3.35
1399 1671 3.489738 GGCAATTAAGCAAGCATCGATGT 60.490 43.478 25.47 10.56 35.83 3.06
1404 1676 5.344128 CGAATATGGCAATTAAGCAAGCATC 59.656 40.000 0.00 0.00 35.83 3.91
1415 1687 4.728772 TCCCAATCTCGAATATGGCAATT 58.271 39.130 0.00 0.00 0.00 2.32
1416 1688 4.371624 TCCCAATCTCGAATATGGCAAT 57.628 40.909 0.00 0.00 0.00 3.56
1417 1689 3.855255 TCCCAATCTCGAATATGGCAA 57.145 42.857 0.00 0.00 0.00 4.52
1418 1690 4.532126 AGTATCCCAATCTCGAATATGGCA 59.468 41.667 0.00 0.00 0.00 4.92
1419 1691 5.091261 AGTATCCCAATCTCGAATATGGC 57.909 43.478 4.85 0.00 0.00 4.40
1420 1692 7.986085 AAAAGTATCCCAATCTCGAATATGG 57.014 36.000 3.63 3.63 0.00 2.74
1443 1728 4.824537 TCTCATGGAAACGGTGATGAAAAA 59.175 37.500 0.00 0.00 0.00 1.94
1448 1733 4.764679 TTTTCTCATGGAAACGGTGATG 57.235 40.909 8.36 0.00 42.80 3.07
1499 1784 6.694411 CGGAAATGCAAAGATATTCTTCTTGG 59.306 38.462 0.00 0.00 35.27 3.61
1512 1797 4.439305 TCTGGATTTCGGAAATGCAAAG 57.561 40.909 29.22 21.54 46.37 2.77
1517 1802 7.042523 GGCAAAATTATCTGGATTTCGGAAATG 60.043 37.037 19.96 6.80 33.91 2.32
1542 1897 9.454859 AAACTTCAGGTTTCTCTAAAGATATGG 57.545 33.333 0.00 0.00 43.87 2.74
1547 1902 8.030913 ACCTAAACTTCAGGTTTCTCTAAAGA 57.969 34.615 0.00 0.00 44.18 2.52
1548 1903 7.388224 GGACCTAAACTTCAGGTTTCTCTAAAG 59.612 40.741 0.00 0.00 46.60 1.85
1565 2049 6.564328 CCAAGCATAATTTCAGGACCTAAAC 58.436 40.000 0.00 0.00 0.00 2.01
1566 2050 5.127031 GCCAAGCATAATTTCAGGACCTAAA 59.873 40.000 0.00 0.00 0.00 1.85
1567 2051 4.644685 GCCAAGCATAATTTCAGGACCTAA 59.355 41.667 0.00 0.00 0.00 2.69
1570 2054 2.760092 TGCCAAGCATAATTTCAGGACC 59.240 45.455 0.00 0.00 31.71 4.46
1586 2070 1.134995 TGTTGTTTCGCAATGTGCCAA 60.135 42.857 0.00 0.00 41.12 4.52
1602 2086 5.545658 AAATTACTGGTATCTGCGTGTTG 57.454 39.130 0.00 0.00 0.00 3.33
1603 2087 6.569179 AAAAATTACTGGTATCTGCGTGTT 57.431 33.333 0.00 0.00 0.00 3.32
1623 2111 2.838637 ACAGTTGACCAGGGGAAAAA 57.161 45.000 0.00 0.00 0.00 1.94
1628 2116 2.621526 GTTACAAACAGTTGACCAGGGG 59.378 50.000 0.00 0.00 38.20 4.79
1633 2121 5.554822 TTCACAGTTACAAACAGTTGACC 57.445 39.130 0.00 0.00 38.20 4.02
1634 2122 7.540745 ACATTTTCACAGTTACAAACAGTTGAC 59.459 33.333 0.00 0.00 38.20 3.18
1637 2125 6.310224 GCACATTTTCACAGTTACAAACAGTT 59.690 34.615 0.00 0.00 0.00 3.16
1638 2126 5.804979 GCACATTTTCACAGTTACAAACAGT 59.195 36.000 0.00 0.00 0.00 3.55
1639 2127 5.804473 TGCACATTTTCACAGTTACAAACAG 59.196 36.000 0.00 0.00 0.00 3.16
1704 2258 3.003275 CCGAAGAGTCTCTGATGTAGCTC 59.997 52.174 2.28 0.00 0.00 4.09
1767 2321 7.438160 TGGCGAGTATATTTTGTGAAGACATAG 59.562 37.037 0.00 0.00 30.13 2.23
1769 2323 6.112734 TGGCGAGTATATTTTGTGAAGACAT 58.887 36.000 0.00 0.00 30.13 3.06
1771 2325 5.502544 GCTGGCGAGTATATTTTGTGAAGAC 60.503 44.000 0.00 0.00 0.00 3.01
1772 2326 4.570772 GCTGGCGAGTATATTTTGTGAAGA 59.429 41.667 0.00 0.00 0.00 2.87
1773 2327 4.332543 TGCTGGCGAGTATATTTTGTGAAG 59.667 41.667 0.00 0.00 0.00 3.02
1774 2328 4.094294 GTGCTGGCGAGTATATTTTGTGAA 59.906 41.667 0.00 0.00 0.00 3.18
1775 2329 3.621268 GTGCTGGCGAGTATATTTTGTGA 59.379 43.478 0.00 0.00 0.00 3.58
1776 2330 3.373748 TGTGCTGGCGAGTATATTTTGTG 59.626 43.478 0.00 0.00 0.00 3.33
1777 2331 3.605634 TGTGCTGGCGAGTATATTTTGT 58.394 40.909 0.00 0.00 0.00 2.83
1778 2332 4.614555 TTGTGCTGGCGAGTATATTTTG 57.385 40.909 0.00 0.00 0.00 2.44
1779 2333 6.542370 ACTTATTGTGCTGGCGAGTATATTTT 59.458 34.615 0.00 0.00 0.00 1.82
1780 2334 6.055588 ACTTATTGTGCTGGCGAGTATATTT 58.944 36.000 0.00 0.00 0.00 1.40
1783 2337 4.665833 ACTTATTGTGCTGGCGAGTATA 57.334 40.909 0.00 0.00 0.00 1.47
1802 2356 8.439172 AGATCGGGATACTACTTTCTAGTTACT 58.561 37.037 0.00 0.00 35.78 2.24
1819 2388 7.475137 TCCAAAACAAATTTAAGATCGGGAT 57.525 32.000 0.00 0.00 0.00 3.85
1821 2390 7.151976 AGTTCCAAAACAAATTTAAGATCGGG 58.848 34.615 0.00 0.00 37.88 5.14
1836 2405 8.524870 TCTACGAAATACAGTAGTTCCAAAAC 57.475 34.615 13.80 0.00 40.69 2.43
1841 2410 6.637658 GCATCTCTACGAAATACAGTAGTTCC 59.362 42.308 13.80 0.00 40.69 3.62
1847 2417 6.149129 TCATGCATCTCTACGAAATACAGT 57.851 37.500 0.00 0.00 0.00 3.55
1848 2418 7.468922 TTTCATGCATCTCTACGAAATACAG 57.531 36.000 0.00 0.00 0.00 2.74
1850 2420 8.304202 AGATTTCATGCATCTCTACGAAATAC 57.696 34.615 16.16 11.60 34.23 1.89
1851 2421 9.981114 TTAGATTTCATGCATCTCTACGAAATA 57.019 29.630 16.16 4.29 34.23 1.40
1852 2422 8.893219 TTAGATTTCATGCATCTCTACGAAAT 57.107 30.769 16.14 16.14 36.17 2.17
1854 2424 6.422100 GCTTAGATTTCATGCATCTCTACGAA 59.578 38.462 9.77 0.00 32.94 3.85
1855 2425 5.923114 GCTTAGATTTCATGCATCTCTACGA 59.077 40.000 9.77 0.00 32.94 3.43
1856 2426 5.693555 TGCTTAGATTTCATGCATCTCTACG 59.306 40.000 9.77 0.85 32.94 3.51
1857 2427 6.927936 TCTGCTTAGATTTCATGCATCTCTAC 59.072 38.462 9.77 3.48 32.94 2.59
1858 2428 6.927936 GTCTGCTTAGATTTCATGCATCTCTA 59.072 38.462 9.77 0.00 32.94 2.43
1859 2429 5.759273 GTCTGCTTAGATTTCATGCATCTCT 59.241 40.000 9.77 0.00 32.94 3.10
1860 2430 5.526479 TGTCTGCTTAGATTTCATGCATCTC 59.474 40.000 9.77 0.00 32.94 2.75
1861 2431 5.434408 TGTCTGCTTAGATTTCATGCATCT 58.566 37.500 0.00 10.92 35.13 2.90
1864 2434 8.370182 TCTATATGTCTGCTTAGATTTCATGCA 58.630 33.333 0.00 0.00 0.00 3.96
1876 2446 8.089597 CAGACTGATTCATCTATATGTCTGCTT 58.910 37.037 13.64 0.00 41.96 3.91
1929 2499 0.753479 TTCAGACTGCCCCGCAAAAA 60.753 50.000 0.00 0.00 38.41 1.94
1930 2500 1.152860 TTCAGACTGCCCCGCAAAA 60.153 52.632 0.00 0.00 38.41 2.44
1931 2501 1.896660 GTTCAGACTGCCCCGCAAA 60.897 57.895 0.00 0.00 38.41 3.68
1932 2502 1.476845 TAGTTCAGACTGCCCCGCAA 61.477 55.000 0.00 0.00 38.41 4.85
1933 2503 1.264749 ATAGTTCAGACTGCCCCGCA 61.265 55.000 0.00 0.00 36.60 5.69
1934 2504 0.107654 AATAGTTCAGACTGCCCCGC 60.108 55.000 0.00 0.00 36.60 6.13
1935 2505 2.280628 GAAATAGTTCAGACTGCCCCG 58.719 52.381 0.00 0.00 36.60 5.73
1936 2506 3.350219 TGAAATAGTTCAGACTGCCCC 57.650 47.619 0.56 0.00 38.88 5.80
1967 2537 4.558226 TGAGGATGTCACTGCAACTAAT 57.442 40.909 0.00 0.00 0.00 1.73
1974 2544 1.160137 GTGGTTGAGGATGTCACTGC 58.840 55.000 0.00 0.00 33.71 4.40
1985 2555 4.926238 GTCAGATACAGTTCTGTGGTTGAG 59.074 45.833 14.69 1.93 43.02 3.02
2008 2578 3.242543 GCTGGTGTGCTTTCTTCATATCG 60.243 47.826 0.00 0.00 0.00 2.92
2031 2601 8.894731 GTCAGTGTACGAGGATGATATATACAT 58.105 37.037 0.00 0.00 0.00 2.29
2032 2602 7.064253 CGTCAGTGTACGAGGATGATATATACA 59.936 40.741 8.78 0.00 45.68 2.29
2033 2603 7.400301 CGTCAGTGTACGAGGATGATATATAC 58.600 42.308 8.78 0.00 45.68 1.47
2034 2604 6.537660 CCGTCAGTGTACGAGGATGATATATA 59.462 42.308 14.17 0.00 45.68 0.86
2037 2607 3.502595 CCGTCAGTGTACGAGGATGATAT 59.497 47.826 14.17 0.00 45.68 1.63
2117 2688 2.118313 TCACCTCGTCGATCCACTTA 57.882 50.000 0.00 0.00 0.00 2.24
2165 2736 3.132160 TGTTTTATTTCCGACGAGCACA 58.868 40.909 0.00 0.00 0.00 4.57
2180 2751 5.462530 TCTGATCAACGAGGTCTGTTTTA 57.537 39.130 0.00 0.00 0.00 1.52
2198 2769 9.403583 TGATATGTATATAATGCGTACCTCTGA 57.596 33.333 0.00 0.00 0.00 3.27
2267 2842 5.262588 ACAAACAGAAGGAAATGAACCAC 57.737 39.130 0.00 0.00 0.00 4.16
2268 2843 5.930837 AACAAACAGAAGGAAATGAACCA 57.069 34.783 0.00 0.00 0.00 3.67
2269 2844 6.593770 ACAAAACAAACAGAAGGAAATGAACC 59.406 34.615 0.00 0.00 0.00 3.62
2270 2845 7.595311 ACAAAACAAACAGAAGGAAATGAAC 57.405 32.000 0.00 0.00 0.00 3.18
2278 2853 2.857748 GGCGAACAAAACAAACAGAAGG 59.142 45.455 0.00 0.00 0.00 3.46
2283 2858 3.577649 TTCAGGCGAACAAAACAAACA 57.422 38.095 0.00 0.00 0.00 2.83
2293 2868 2.251371 GGCAACGTTCAGGCGAAC 59.749 61.111 0.00 10.73 46.77 3.95
2294 2869 2.203084 TGGCAACGTTCAGGCGAA 60.203 55.556 0.00 0.00 42.51 4.70
2296 2871 4.368808 CGTGGCAACGTTCAGGCG 62.369 66.667 5.16 0.00 44.93 5.52
2326 2901 3.952628 CTTCCCCTTCGTCCGTGGC 62.953 68.421 0.00 0.00 0.00 5.01
2367 2942 1.742761 CGCTGGTCTCCATGAACAAT 58.257 50.000 0.00 0.00 42.55 2.71
2438 3013 9.632807 CGATCTTATATTTCTTTACAGAGGGAG 57.367 37.037 0.00 0.00 0.00 4.30
2439 3014 9.144298 ACGATCTTATATTTCTTTACAGAGGGA 57.856 33.333 0.00 0.00 0.00 4.20
2440 3015 9.765795 AACGATCTTATATTTCTTTACAGAGGG 57.234 33.333 0.00 0.00 0.00 4.30
2461 3036 6.839454 TCTACTCCCTAGTGATCTAAACGAT 58.161 40.000 0.00 0.00 36.36 3.73
2462 3037 6.244552 TCTACTCCCTAGTGATCTAAACGA 57.755 41.667 0.00 0.00 36.36 3.85
2463 3038 6.939132 TTCTACTCCCTAGTGATCTAAACG 57.061 41.667 0.00 0.00 36.36 3.60
2464 3039 8.700439 AGATTCTACTCCCTAGTGATCTAAAC 57.300 38.462 0.00 0.00 36.36 2.01
2468 3043 9.528489 GAAATAGATTCTACTCCCTAGTGATCT 57.472 37.037 0.00 0.00 36.36 2.75
2469 3044 9.528489 AGAAATAGATTCTACTCCCTAGTGATC 57.472 37.037 0.00 0.00 46.65 2.92
2483 3058 8.506734 TGCAAAATGGCTGGAGAAATAGATTCT 61.507 37.037 0.00 0.00 42.04 2.40
2484 3059 5.981915 GCAAAATGGCTGGAGAAATAGATTC 59.018 40.000 0.00 0.00 38.39 2.52
2485 3060 5.422970 TGCAAAATGGCTGGAGAAATAGATT 59.577 36.000 0.00 0.00 34.04 2.40
2486 3061 4.957954 TGCAAAATGGCTGGAGAAATAGAT 59.042 37.500 0.00 0.00 34.04 1.98
2489 3064 4.957954 AGATGCAAAATGGCTGGAGAAATA 59.042 37.500 0.00 0.00 34.04 1.40
2490 3065 3.773119 AGATGCAAAATGGCTGGAGAAAT 59.227 39.130 0.00 0.00 34.04 2.17
2495 3070 1.272592 TGGAGATGCAAAATGGCTGGA 60.273 47.619 0.00 0.00 34.04 3.86
2497 3072 2.232941 AGTTGGAGATGCAAAATGGCTG 59.767 45.455 0.00 0.00 34.04 4.85
2500 3091 2.827322 TGGAGTTGGAGATGCAAAATGG 59.173 45.455 0.00 0.00 0.00 3.16
2505 3096 0.322816 GGCTGGAGTTGGAGATGCAA 60.323 55.000 0.00 0.00 0.00 4.08
2510 3101 0.843309 TGTTTGGCTGGAGTTGGAGA 59.157 50.000 0.00 0.00 0.00 3.71
2516 3107 1.271597 GGTCAGATGTTTGGCTGGAGT 60.272 52.381 0.00 0.00 33.05 3.85
2538 3133 2.833794 CAGTCAGGGTTCGAGTTTTCA 58.166 47.619 0.00 0.00 0.00 2.69
2540 3135 1.134220 TGCAGTCAGGGTTCGAGTTTT 60.134 47.619 0.00 0.00 0.00 2.43
2543 3138 1.668294 CTGCAGTCAGGGTTCGAGT 59.332 57.895 5.25 0.00 36.68 4.18
2565 3163 2.125832 GGCGATCGTCCGGAACAA 60.126 61.111 17.81 0.00 0.00 2.83
2573 3171 1.411493 GAAGGTTCGTGGCGATCGTC 61.411 60.000 13.98 13.98 35.23 4.20
2591 3189 2.758327 AGCGCGTCCATACCAGGA 60.758 61.111 8.43 0.00 34.64 3.86
2606 3204 4.742201 TGCTTGGCCGACGAGAGC 62.742 66.667 0.00 0.00 31.73 4.09
2686 3284 3.036783 GCTTTCTGCTCCTGCTGCG 62.037 63.158 0.00 0.00 40.48 5.18
2714 3312 3.282021 AGAACACAAAGCTCAGCAAGAA 58.718 40.909 0.00 0.00 0.00 2.52
2751 3349 2.669569 GCTCTGTCTGCCCGCAAA 60.670 61.111 0.00 0.00 0.00 3.68
2754 3352 3.123620 CTTGCTCTGTCTGCCCGC 61.124 66.667 0.00 0.00 0.00 6.13
2755 3353 0.392193 ATTCTTGCTCTGTCTGCCCG 60.392 55.000 0.00 0.00 0.00 6.13
2756 3354 1.093159 CATTCTTGCTCTGTCTGCCC 58.907 55.000 0.00 0.00 0.00 5.36
2758 3356 5.557891 AATTACATTCTTGCTCTGTCTGC 57.442 39.130 0.00 0.00 0.00 4.26
2759 3357 6.805271 CCAAAATTACATTCTTGCTCTGTCTG 59.195 38.462 0.00 0.00 0.00 3.51
2760 3358 6.571150 GCCAAAATTACATTCTTGCTCTGTCT 60.571 38.462 0.00 0.00 0.00 3.41
2761 3359 5.574443 GCCAAAATTACATTCTTGCTCTGTC 59.426 40.000 0.00 0.00 0.00 3.51
2762 3360 5.473039 GCCAAAATTACATTCTTGCTCTGT 58.527 37.500 0.00 0.00 0.00 3.41
2764 3362 4.527816 TGGCCAAAATTACATTCTTGCTCT 59.472 37.500 0.61 0.00 0.00 4.09
2784 3413 0.313672 TGTCCGCAATCTGTTTTGGC 59.686 50.000 0.00 0.00 0.00 4.52
2814 3443 4.973663 CGTTCTCACGCCTAAACAATTTTT 59.026 37.500 0.00 0.00 40.18 1.94
2821 3450 3.865224 TTTTCGTTCTCACGCCTAAAC 57.135 42.857 0.00 0.00 46.70 2.01
2934 3563 0.693622 TTAGTGGGCAACATTCGGGA 59.306 50.000 0.00 0.00 39.74 5.14
2935 3564 1.676006 GATTAGTGGGCAACATTCGGG 59.324 52.381 0.00 0.00 39.74 5.14
2937 3566 1.330521 CCGATTAGTGGGCAACATTCG 59.669 52.381 0.00 0.00 39.74 3.34
2947 3576 0.810031 CCGTCCTTGCCGATTAGTGG 60.810 60.000 0.00 0.00 0.00 4.00
2948 3577 0.108329 ACCGTCCTTGCCGATTAGTG 60.108 55.000 0.00 0.00 0.00 2.74
2958 3587 1.268899 ACGAGTAACTGACCGTCCTTG 59.731 52.381 0.00 0.00 31.82 3.61
2961 3590 0.595095 ACACGAGTAACTGACCGTCC 59.405 55.000 0.00 0.00 34.15 4.79
2968 3597 1.060713 CGAAGGCACACGAGTAACTG 58.939 55.000 0.00 0.00 33.01 3.16
2988 3617 1.214589 GGCAGAAACATGGCAGCAG 59.785 57.895 0.00 0.00 44.71 4.24
3078 5312 2.282462 AGGCTGGCGTTTTCCCTG 60.282 61.111 0.00 0.00 0.00 4.45
3081 5315 1.657751 GGATCAGGCTGGCGTTTTCC 61.658 60.000 15.73 8.00 0.00 3.13
3120 5358 5.500234 TGCAGTTAATCAGGCTGTTAATCT 58.500 37.500 15.27 13.51 33.18 2.40
3154 5392 5.467735 GGACATAAAAGTACGTCACTGGTTT 59.532 40.000 0.00 0.00 37.63 3.27
3155 5393 4.992951 GGACATAAAAGTACGTCACTGGTT 59.007 41.667 0.00 0.00 37.63 3.67
3156 5394 4.039488 TGGACATAAAAGTACGTCACTGGT 59.961 41.667 0.00 0.00 37.63 4.00
3157 5395 4.562082 TGGACATAAAAGTACGTCACTGG 58.438 43.478 0.00 0.00 37.63 4.00
3170 5408 3.961849 TGCTGCCATACTTGGACATAAA 58.038 40.909 0.00 0.00 46.92 1.40
3302 5549 1.619654 TCAAATGCACCCACTTCTGG 58.380 50.000 0.00 0.00 37.29 3.86
3352 5599 5.402270 GTCATACTTTTTGTGCACACCATTC 59.598 40.000 21.56 0.00 0.00 2.67
3359 5606 8.664798 TCATATGTAGTCATACTTTTTGTGCAC 58.335 33.333 10.75 10.75 39.03 4.57
3443 5698 3.809832 CCAAGAAGTGTTCTCATGTCGTT 59.190 43.478 0.00 0.00 39.61 3.85
3445 5700 3.393800 ACCAAGAAGTGTTCTCATGTCG 58.606 45.455 0.00 0.00 39.61 4.35
3468 5723 3.274288 GAGGGACCAATCATGAAGTGAC 58.726 50.000 0.00 0.00 40.28 3.67
3481 5736 1.073319 TTGGTGAAGGGAGGGACCA 60.073 57.895 0.00 0.00 41.20 4.02
3484 5739 0.193574 AGTCTTGGTGAAGGGAGGGA 59.806 55.000 0.00 0.00 0.00 4.20
3490 5745 3.264450 AGGGTTGATAGTCTTGGTGAAGG 59.736 47.826 0.00 0.00 0.00 3.46
3554 5809 6.469410 TGTGACGGAGGAAGTATTATTGTTT 58.531 36.000 0.00 0.00 0.00 2.83
3563 5818 4.345859 ACATTTTGTGACGGAGGAAGTA 57.654 40.909 0.00 0.00 0.00 2.24
3564 5819 3.208747 ACATTTTGTGACGGAGGAAGT 57.791 42.857 0.00 0.00 0.00 3.01
3565 5820 4.994852 TCTTACATTTTGTGACGGAGGAAG 59.005 41.667 0.00 0.00 0.00 3.46
3566 5821 4.753107 GTCTTACATTTTGTGACGGAGGAA 59.247 41.667 0.00 0.00 0.00 3.36
3567 5822 4.312443 GTCTTACATTTTGTGACGGAGGA 58.688 43.478 0.00 0.00 0.00 3.71
3568 5823 3.122948 CGTCTTACATTTTGTGACGGAGG 59.877 47.826 10.80 0.00 40.69 4.30
3569 5824 3.423123 GCGTCTTACATTTTGTGACGGAG 60.423 47.826 16.93 0.00 42.96 4.63
3570 5825 2.477375 GCGTCTTACATTTTGTGACGGA 59.523 45.455 16.93 0.00 42.96 4.69
3571 5826 2.478894 AGCGTCTTACATTTTGTGACGG 59.521 45.455 16.93 5.02 42.96 4.79
3572 5827 3.788434 AGCGTCTTACATTTTGTGACG 57.212 42.857 13.15 13.15 44.45 4.35
3573 5828 6.806120 AAAAAGCGTCTTACATTTTGTGAC 57.194 33.333 0.00 0.00 0.00 3.67
3574 5829 7.968956 TGTTAAAAAGCGTCTTACATTTTGTGA 59.031 29.630 0.00 0.00 0.00 3.58
3575 5830 8.047859 GTGTTAAAAAGCGTCTTACATTTTGTG 58.952 33.333 0.00 0.00 0.00 3.33
3576 5831 7.971722 AGTGTTAAAAAGCGTCTTACATTTTGT 59.028 29.630 0.00 0.00 0.00 2.83
3577 5832 8.335256 AGTGTTAAAAAGCGTCTTACATTTTG 57.665 30.769 0.00 0.00 0.00 2.44
3578 5833 9.442033 GTAGTGTTAAAAAGCGTCTTACATTTT 57.558 29.630 0.00 0.00 0.00 1.82
3579 5834 8.614346 TGTAGTGTTAAAAAGCGTCTTACATTT 58.386 29.630 0.00 0.00 0.00 2.32
3580 5835 8.066000 GTGTAGTGTTAAAAAGCGTCTTACATT 58.934 33.333 0.00 0.00 0.00 2.71
3581 5836 7.440255 AGTGTAGTGTTAAAAAGCGTCTTACAT 59.560 33.333 0.00 0.00 0.00 2.29
3582 5837 6.757947 AGTGTAGTGTTAAAAAGCGTCTTACA 59.242 34.615 0.00 0.00 0.00 2.41
3583 5838 7.170240 AGTGTAGTGTTAAAAAGCGTCTTAC 57.830 36.000 0.00 0.00 0.00 2.34
3584 5839 8.137437 ACTAGTGTAGTGTTAAAAAGCGTCTTA 58.863 33.333 0.00 0.00 37.69 2.10
3585 5840 6.982724 ACTAGTGTAGTGTTAAAAAGCGTCTT 59.017 34.615 0.00 0.00 37.69 3.01
3586 5841 6.510536 ACTAGTGTAGTGTTAAAAAGCGTCT 58.489 36.000 0.00 0.00 37.69 4.18
3587 5842 6.760161 ACTAGTGTAGTGTTAAAAAGCGTC 57.240 37.500 0.00 0.00 37.69 5.19
3600 5855 4.365723 CCGTTTGTTGACACTAGTGTAGT 58.634 43.478 27.98 6.32 45.05 2.73
3601 5856 3.183775 GCCGTTTGTTGACACTAGTGTAG 59.816 47.826 27.98 11.54 45.05 2.74
3602 5857 3.125316 GCCGTTTGTTGACACTAGTGTA 58.875 45.455 27.98 11.50 45.05 2.90
3604 5859 2.210116 AGCCGTTTGTTGACACTAGTG 58.790 47.619 21.44 21.44 0.00 2.74
3605 5860 2.614829 AGCCGTTTGTTGACACTAGT 57.385 45.000 0.00 0.00 0.00 2.57
3606 5861 3.805422 TGTAAGCCGTTTGTTGACACTAG 59.195 43.478 0.00 0.00 0.00 2.57
3607 5862 3.794717 TGTAAGCCGTTTGTTGACACTA 58.205 40.909 0.00 0.00 0.00 2.74
3608 5863 2.634600 TGTAAGCCGTTTGTTGACACT 58.365 42.857 0.00 0.00 0.00 3.55
3609 5864 3.619233 ATGTAAGCCGTTTGTTGACAC 57.381 42.857 0.00 0.00 0.00 3.67
3610 5865 5.278071 CCTTAATGTAAGCCGTTTGTTGACA 60.278 40.000 0.00 0.00 34.46 3.58
3611 5866 5.151389 CCTTAATGTAAGCCGTTTGTTGAC 58.849 41.667 0.00 0.00 34.46 3.18
3612 5867 4.216687 CCCTTAATGTAAGCCGTTTGTTGA 59.783 41.667 0.00 0.00 34.46 3.18
3613 5868 4.216687 TCCCTTAATGTAAGCCGTTTGTTG 59.783 41.667 0.00 0.00 34.46 3.33
3614 5869 4.216902 GTCCCTTAATGTAAGCCGTTTGTT 59.783 41.667 0.00 0.00 34.46 2.83
3615 5870 3.754850 GTCCCTTAATGTAAGCCGTTTGT 59.245 43.478 0.00 0.00 34.46 2.83
3616 5871 3.181514 CGTCCCTTAATGTAAGCCGTTTG 60.182 47.826 0.00 0.00 34.46 2.93
3617 5872 3.004862 CGTCCCTTAATGTAAGCCGTTT 58.995 45.455 0.00 0.00 34.46 3.60
3618 5873 2.624636 CGTCCCTTAATGTAAGCCGTT 58.375 47.619 0.00 0.00 34.46 4.44
3619 5874 1.134610 CCGTCCCTTAATGTAAGCCGT 60.135 52.381 0.00 0.00 34.46 5.68
3620 5875 1.137479 TCCGTCCCTTAATGTAAGCCG 59.863 52.381 0.00 0.00 34.46 5.52
3621 5876 2.484947 CCTCCGTCCCTTAATGTAAGCC 60.485 54.545 0.00 0.00 34.46 4.35
3622 5877 2.484947 CCCTCCGTCCCTTAATGTAAGC 60.485 54.545 0.00 0.00 34.46 3.09
3623 5878 3.036091 TCCCTCCGTCCCTTAATGTAAG 58.964 50.000 0.00 0.00 35.56 2.34
3624 5879 3.036091 CTCCCTCCGTCCCTTAATGTAA 58.964 50.000 0.00 0.00 0.00 2.41
3625 5880 2.023695 ACTCCCTCCGTCCCTTAATGTA 60.024 50.000 0.00 0.00 0.00 2.29
3626 5881 1.273666 ACTCCCTCCGTCCCTTAATGT 60.274 52.381 0.00 0.00 0.00 2.71
3627 5882 1.497161 ACTCCCTCCGTCCCTTAATG 58.503 55.000 0.00 0.00 0.00 1.90
3628 5883 2.246849 AGTACTCCCTCCGTCCCTTAAT 59.753 50.000 0.00 0.00 0.00 1.40
3629 5884 1.642762 AGTACTCCCTCCGTCCCTTAA 59.357 52.381 0.00 0.00 0.00 1.85
3630 5885 1.302907 AGTACTCCCTCCGTCCCTTA 58.697 55.000 0.00 0.00 0.00 2.69
3631 5886 0.412640 AAGTACTCCCTCCGTCCCTT 59.587 55.000 0.00 0.00 0.00 3.95
3632 5887 0.412640 AAAGTACTCCCTCCGTCCCT 59.587 55.000 0.00 0.00 0.00 4.20
3633 5888 1.206610 GAAAAGTACTCCCTCCGTCCC 59.793 57.143 0.00 0.00 0.00 4.46
3634 5889 2.177734 AGAAAAGTACTCCCTCCGTCC 58.822 52.381 0.00 0.00 0.00 4.79
3635 5890 3.957591 AAGAAAAGTACTCCCTCCGTC 57.042 47.619 0.00 0.00 0.00 4.79
3636 5891 3.644738 TGAAAGAAAAGTACTCCCTCCGT 59.355 43.478 0.00 0.00 0.00 4.69
3637 5892 4.267349 TGAAAGAAAAGTACTCCCTCCG 57.733 45.455 0.00 0.00 0.00 4.63
3638 5893 6.238648 TGATTGAAAGAAAAGTACTCCCTCC 58.761 40.000 0.00 0.00 0.00 4.30
3639 5894 7.929941 ATGATTGAAAGAAAAGTACTCCCTC 57.070 36.000 0.00 0.00 0.00 4.30
3640 5895 8.826765 TCTATGATTGAAAGAAAAGTACTCCCT 58.173 33.333 0.00 0.00 0.00 4.20
3641 5896 9.449719 TTCTATGATTGAAAGAAAAGTACTCCC 57.550 33.333 0.00 0.00 0.00 4.30
3679 5934 4.475747 ACTTATTTTGGGACGGAGGGAATA 59.524 41.667 0.00 0.00 0.00 1.75
3680 5935 3.268595 ACTTATTTTGGGACGGAGGGAAT 59.731 43.478 0.00 0.00 0.00 3.01
3681 5936 2.645797 ACTTATTTTGGGACGGAGGGAA 59.354 45.455 0.00 0.00 0.00 3.97
3682 5937 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3683 5938 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
3684 5939 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3685 5940 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
3686 5941 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
3687 5942 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
3688 5943 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
3689 5944 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3690 5945 8.934023 ATAAAGTTGAGTCACTTATTTTGGGA 57.066 30.769 0.00 0.00 35.87 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.