>input_sequence_44628
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-------------------ATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGG
TGGGCAAGACCGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGTCTCCTCCTCTTTCTC----
------TTCGATTTGCAAAGCTCCCCATCGATCGATCGATCGCCCCAACCTCGTACGATTGGCAAAT----TCTGACCGC
CTGCTGTGGCTCTGTGTGCAGGCCACCATCGGGATCGATTTCCTCTCCAAGACCATGTACCTCGAGGACCGCACGGTTCG
CCTACAGCTATGGTATGCGATG--------------------------------------GTTCCTCGTTGAGCTGCCTT
GTTTTGGTTGTAGTAATAATAAAATTCAGTTGTGCTGCATATGTCCAGCTGGTTATTTGTAAACTCTGACACATCGATGC
TTGCTTAATTGCCATATTCGAGATTGGGATA-------------CTTTTTTTCATCACCGTTTCCATGAGAAAAAGAAAA
AAGAACATGGATGTATTATTTTTCCAAGAAGAATATCTTTGCA-------------------------------------
---------------------------------TTTCCGAAATCCAGATAATTTTGCCATATC-----------------
--------------------------------------------------------------------------------
--------------------------------TTTAGAGAAACCTGAAGTTTAGGTCCTGAAATTATGCTTGGCACATTG
CGAAACAACACGC----AGATACCAGTAATTTTTTCCCCTGGTCAAC---------------------------------
---------------------------------TGTTTGTAACTGTGAAAATGTGCAGGGACACGGCTGGGCAGGAGAGG
TTCCGGAGCCTGATTCCGAGCTACATCAGAGACTCTTCGGTCGCGGTGATCGTCTACGACGTAACAGGCAAGTTACCTGT
CTATGTCTTCACAAAATATACTCGCCAGCACAATAAGTA---------------ACTAGAAAGTAGTATCCCGATCTTAA
ATTTGTTTTGGAA-CTACTGTATTTCGTAGAGATGCATGAAATCTAAGCAGACATATAGATGAATCAGTCTGAACTATTT
CTTTTTTTTTCTTTTTTTTTTTTGCGGGGCAGTCTGAACTATTTCAGCTGAGGGTAATTAGTTGCAGTGACATCCTCAAC
CACAGAACTGTATCTGACGATATGAAGAAAGCACACCAGCATGTATATATCATCCTCGTACACTGACGGCCTCGTAC-CA
CCAATTCTCTTCTTTTTTGCAGACACGCAATCGTTTCTGCATACATCTAAGTGGATCGACGAGGTGAACACGGCGAGAGG
CAAAGACGTGCTGATTGTGCTCGTCGGAAATAAAACAGACCTCGTTGATCAGAGGTACGCAT----TATATACATATCAC
TGAATCTCTGTGGAGAAAGCCACACTGCACCAATCTTGGCGGTGGTTCATTTCCTTCTGTTTGTTTTGTTCGCCTGAACG
TTGCCACGTGCAGGCAAGTGGCCACGGACGAAGGGGAAGCCAAGGCCAAGGAGCACGGCGCATTGTTCATGGAGACCAGC
GCCAAGGCCGGCTTCAACATCAAGGTTCTCCCAACTTGTTTTTTATCTATTACTCCCTCTGTAAAGAAATATAAGATCGT
TTAGATCACTAGGGAGTAGAATCTATTTCTCCAG----------------CCATTTTGCATCTCCAA----CTCCAGCCA
AACATCTGACCGTGAAAACTCGAACCCTG---ACTGCAGGCGTTGTTCCGGACGATCGCCACGAACCTTCCTGGTATGGA
CGCGCTCTCGTCGGCCAAGCAGGAGGACATGGTGGACATCAACCTGAGGCCGGCCTCCGGGCCAGCAGGCTCAGGCGCCG
CCGCGCAGCAGGAGCAGAAAGCAGGAGGATGTTCTTGCTGA---------------------------------------
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>chr4A_1_TraesCS4A01G407500
CTCAACTGTTCAGGCGCCATCGATCAGCCTCCACAATTCCAAACTATTGGCGATTTGATGGAAGGATCTTCACATGGTGA
TCGATGAGTAAGGTTTGTCGAGGGTGATGTTGCCAATGAGGAGTGGTTAGATGTCGAGGTTTAAACTAGGGTTGGTTTGT
GTTAGGGATGGGTATTTGTTGCACAACCCGCCAAATGTTGTTGGTGTCATGTATCGATGGATGACTTTAGTTCCGTACAT
TTTCTGTAATAGAAAGGTAGACGACTCGCTTCGGCATTTGCATGATAATATACATGAAAAGGGCATTTGCAGCTAAGTTA
TCTTTCGATGAAATTATGAAATAT-----TTTCGACCTCTCAGCAATCGTAGAAAAATTTAGACTAATACACCCCCACCC
CCACCCC-------------------------------------------------------------------------
----------------------------------GAGCTTTGCCATTTGGACAAAATCAGGTTGTTATACCATAGCAACA
TGTGCAATTTCCCGTTTAAGAGAACAGAGGAGGCGATGTTTTGAAAGAAGAAGAAGAAGAAGAAGAAGAAGACAACGACC
GATAGAAGCGGGTGACAACATGTGGTAAATGAATCGACACGGACAAA----------ACTGCAAGCGTCTGTTGCAGTTA
GGTCGCCCCCTTTTGGAACGCACCGATTAC-------------TAGCTTGGATTTATGTCGAACAAAACAGGGGG-----
------------------------------------------AGTGCTTCGTGGCCAAGGAAGAAAAAGTTGCAAGA-AA
GAATACAAACTTTCAAGGAGTAGGAGTAGTAGTAGTAGTAGTATTTGCATGGACGGATGGCGCGTCAACACACGGGACTC
CTTCCCCAGCTGGCTTTGGGAACGTCCAAAGTCGCCCCGTCCCCTTCTCCGTTCAAAGCAAACCTCCTTCTTCTTCTTCT
TCCGTCCGTCCCCTTTCCACTGGTTTCACGCGTCCAGACCCGATCGAGC------------------A------------
------TCCAAATTGCTCCAGGGAGCATCCAACTCGGAGCAGAAGAGATCGCATCGCCCGACTAGCTAGCTCCGGGCCGA
GCAAGCAAGCAAGCAAGCGATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGG
TGGGCAAGACCGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGTCTCCTCCTCTTTCTC----
------TTCGATTTGCAAAGCTCCCCATCGATCGATCGATCGCCCCAACCTCGTACGATTGGCAAAT----TCTGACCGC
CTGCTGTGGCTCTGTGTGCAGGCCACCATCGGGATCGATTTCCTCTCCAAGACCATGTACCTCGAGGACCGCACGGTTCG
CCTACAGCTATGGTATGCGATG--------------------------------------GTTCCTCGTTGAGCTGCCTT
GTTTTGGTTGTAGTAATAATAAAATTCAGTTGTGCTGCATATGTCCAGCTGGTTATTTGTAAACTCTGACACATCGATGC
TTGCTTAATTGCCATATTCGAGATTGGGATA-------------CTTTTTTTCATCACCGTTTCCATGAGAAAAAGAAAA
AAGAACATGGATGTATTATTTTTCCAAGAAGAATATCTTTGCA-------------------------------------
---------------------------------TTTCCGAAATCCAGATAATTTTGCCATATC-----------------
--------------------------------------------------------------------------------
--------------------------------TTTAGAGAAACCTGAAGTTTAGGTCCTGAAATTATGCTTGGCACATTG
CGAAACAACACGC----AGATACCAGTAATTTTTTCCCCTGGTCAAC---------------------------------
---------------------------------TGTTTGTAACTGTGAAAATGTGCAGGGACACGGCTGGGCAGGAGAGG
TTCCGGAGCCTGATTCCGAGCTACATCAGAGACTCTTCGGTCGCGGTGATCGTCTACGACGTAACAGGCAAGTTACCTGT
CTATGTCTTCACAAAATATACTCGCCAGCACAATAAGTA---------------ACTAGAAAGTAGTATCCCGATCTTAA
ATTTGTTTTGGAA-CTACTGTATTTCGTAGAGATGCATGAAATCTAAGCAGACATATAGATGAATCAGTCTGAACTATTT
CTTTTTTTTTCTTTTTTTTTTTTGCGGGGCAGTCTGAACTATTTCAGCTGAGGGTAATTAGTTGCAGTGACATCCTCAAC
CACAGAACTGTATCTGACGATATGAAGAAAGCACACCAGCATGTATATATCATCCTCGTACACTGACGGCCTCGTAC-CA
CCAATTCTCTTCTTTTTTGCAGACACGCAATCGTTTCTGCATACATCTAAGTGGATCGACGAGGTGAACACGGCGAGAGG
CAAAGACGTGCTGATTGTGCTCGTCGGAAATAAAACAGACCTCGTTGATCAGAGGTACGCAT----TATATACATATCAC
TGAATCTCTGTGGAGAAAGCCACACTGCACCAATCTTGGCGGTGGTTCATTTCCTTCTGTTTGTTTTGTTCGCCTGAACG
TTGCCACGTGCAGGCAAGTGGCCACGGACGAAGGGGAAGCCAAGGCCAAGGAGCACGGCGCATTGTTCATGGAGACCAGC
GCCAAGGCCGGCTTCAACATCAAGGTTCTCCCAACTTGTTTTTTATCTATTACTCCCTCTGTAAAGAAATATAAGATCGT
TTAGATCACTAGGGAGTAGAATCTATTTCTCCAG----------------CCATTTTGCATCTCCAA----CTCCAGCCA
AACATCTGACCGTGAAAACTCGAACCCTG---ACTGCAGGCGTTGTTCCGGACGATCGCCACGAACCTTCCTGGTATGGA
CGCGCTCTCGTCGGCCAAGCAGGAGGACATGGTGGACATCAACCTGAGGCCGGCCTCCGGGCCAGCAGGCTCAGGCGCCG
CCGCGCAGCAGGAGCAGAAAGCAGGAGGATGTTCTTGCTGAGCTTTGTGTTCTTTTATTAGAGGAGAGTTTGCGGGCAGA
CAGA-------------------------------GCAAGAATGTAATTTTGGCCAAAACAGATTGCGGACAGAGAAATG
AAAAAAATTGTTTAGGCGTGAGAACGAAAAAAAAAGTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGG
CGGGAATACTTACCACTATACTACAACGACTTGGTGATGATTTCCCGAATGTTGCCCACTAATCGGCAAGGACGGTCAGT
TACTCGTGTGCCTTCGCTGC------------------------------------------------------------
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---TGCCATGTTTCTGCCTTGCAA--------------------------------------------------------
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---------------------------------------AATTCACCTCCATTGTGTGAGCTAGATGAATGG-------G
ATGATGTACTCTTCTTTTCACAGAACTACAACAGGGAAAACGCCAGCCTGATCCTAAATTTA----GCTTTAGTCTAAGA
TTAACAGCCTGATTAACTGCAAAAGCAAAAAAAACCAGTGACGTACTTTTATGTCCAAGTATGGCAGCATGATTCACGAG
CGTAGATTCATGTCGTCCGTTCTGGA--------CGGTGAGGCATTTGATGAGTGACTTTTGACTTTTGATTTACCAAGG
CGACCG-TAATCAAGCACGGTGACATAACCAGAAGTGGGTGCATTTGATGAGTGACTTTTGACTTATAATGCACTTGCGA
ATGGTG-------TGCACAAAAAGTATGACTACATATGAGCACTGAACAAT-GTCGCTCATGCCTACTTCAGCCTGTTGT
GAAATCTTCCTGTTTACAACGACATGAGAACACTTCTTGGTAGTCACTTCATGATTGGTCCCTCCCTTCACCAAGACTAT
CAACCCTACCCAGTGAGGCTCTCTCTCAATAAATAGTTTAGATTGAACAAACAATAATACTTCCTCCGTCACAAAATGTA
AGACGCTTTTTAACACTACACTAGTGTCAACAAACGGCTTACATTAAGGGACGGAGGGAGTACTTTTCTTTCAATCATAG
AACACTAACCAGATATTCCCTCCGTCCCAAAATAAGTGACTCAACTTTATAGTAACTT
>chr4D_1
CTCAAGTGTCCGGGTGTCATCGATCAGCCTCCACTATTCCAAACTATTGGCGATTTGATCAAAGGATCTTCACATGGCGA
TCGATGAGTAAGGTT-GTCGAGGGTGATGTTGCCAATGAGGAGTGGTTAGATGTCGAGGTTTAAACTAGGCCCGGTTTGT
ATTAGTGATGGGTATTTGTTGCACAACCTGCCAAATGTTGTTGGTGTCATGTATAGTTGGATGACTTTAGTTCCGTAAAT
TTTCTGTAATAGAAAGGTAGGCGACTCGCTTCGGCATTTGCATGATAATATATATTGAAAGGGTATTTGCCGCTAGGTTA
TGTTCCGATGAAATTATTATTGATGTTTATTTTTATCTTTTAGCCACCGTAGACAAATTTAGAGTAATAGTACAAACCTA
GCTGCGTACGTCGTTACAGCCTCGGAGCAGAGAACTATTACATCGTCGCACTGGACGTGTGATTTTCCATCGACTTGCCT
GACCCTCATGTACCCTAATGCTGGCTCGGCCACTGAGCTTTGCCATCTGGACAAAAGCAGGCTGTTACCATGGCGAACAT
GCGCAG--TTCCCGTTTAAGGAAACAGAGGAGGTGATGTTTCAAAAGAAGAACAAGACGTCGATGATA------------
--------------ACAACACGTGGCAAATGAGTC------GACAAA----------ACTGCAAACGTTTGTTGCAGTTA
GGTCGCCCCCTTTTGGAACGCACCAATTAC-------------TAGCTTGGATTTATGTA--------------------
----------------------------------------------CTTCGTGGCCAAGGAAGAGAAAGTTCCAAGA-AA
GAATACAAACTTTGAAGGAGC---------------AGTAGTATTTGCATGGACGGATGGCCCGTCAACACACGGGACTC
CTTCCCCAGCTGGCTTCGGAAACGTCCAAAGTCGCCTCCTCCCCTTCTCCGTTCAAAGCAAGCCTTCTTCTTCTTCTTC-
------CGTCCCCTTTCCACTGGTTTCACGCGTCCAAACCCGGTCGAGCACGCACCTCCACGACTCGA------------
------TCCAAATCACTCCGGGGAGCGTCCAACTCGGAGCAGAAGAG-----ATCGCCCGACGAGCTAGCTCCGGGCCGA
GCAAGCAAGCT----AGCCATGGCGCCGGCGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGG
TGGGCAAGACCGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGTCCCCCTCCCTCCCTCCTTT
CTAGTATTCGATTTGCAAAGCTCCC--------GATCGATCGCCCCAACCTCGTACGATTGGCAAAT----TCTGACCGT
CTGCTGTGACTCTGTGTGCAGGCCACCATCGGGATCGATTTCCTCTCCAAGACCATGTACCTCGAGGACCGCACGGTTCG
CCTGCAGCTATGGTATGCAATACTAGTTTCCTTTTGGTAGCCTCCTTTGGGGGAGGGATCGTTCATCGTTGAGCTGCCTT
GTTATAGTTGTAAAATT-----AATTCAGTTGTGCTGCATATGCCCGGATAATTATTTCTAAATTCTGACGCATCCATGC
TTGCTTGT----CATTTTCGACATTGGGAAAGCCTCCAAATCTTCTTCTTTTTATCACCGTA------------------
-----------------TTTTTTTCAAGAAGAATATTTCTGTG-------------------------------------
---------------------------------TTTCCAAAATCTAGATAATTTTGTAATA---CTACTTTTGTTCCTAA
ATATAAGACGCTTTTGCACTTCAAT-----------------------------------TGCAAAATCGTCTTATATTT
AGGAACACAGGGTGTAGTTCTTAACTGTTTCTTTTAGAGAAACCTGAACCGTAAGTCCTGAAATTATGCCTGGCACATTG
CGAAAACAACACATACGAGATACCAGTAATATTTTTCCCCTTCCCTGAGGACTTGAGATGCCGGAAACATGCTTGCACAT
GTCAAATGCGAAAATCTCGAAGGGTGACATAGTTGTTTGTAACTGTGAAAATGTGCAGGGACACGGCTGGGCAGGAGAGG
TTCCGGAGTCTGATTCCAAGCTACATCAGAGACTCTTCTGTCGCGGTCATCGTCTACGATGTAACTGGCAAGTTGCCTGT
TATTAC--------AAAATACTCGCCAGCAGAATATCTAGCTAATTTGTACTGCAATACAAAGTAGTGTTCCAATCTGAA
ATTTATTTTCAAA-CTGTTTGCTACT-----GACTAATGAAATCTGAGCGGACATATAGATGAATCAGTT----------
----------------------------------TGAACCATTTCATCTGAGGGTACTTAGTCACAGTGACATCTTCAAC
CACAGAACTGTATCTGATGATATGAAGAAAGCATGCCAGC----ATGCATCATCCTCGTACACTGACGGCCTCATACACA
CCA------TTGTTTTCTGCAGACACGCAATCGTTTCTTCATACATCGAAGTGGATCGATGAGGTGAACACGGCAAGAGG
CAAAGATGTGCTGATCGTGCTCGTCGGAAACAAAACAGACCTCGTTGACCAGAGGTACGTACAT----TATACATATCCC
TGAACCTCTGTGGCGAAAGCCACATTGCGCCAATCTTGGCGA---TTCATTTTCTTCCGTTTATTCACCTGA----AT-G
TTGCCGCCTCCAGGCAAGTGCCCACGGACGAAGGGGAGGCCAAGGCCAAGGAGCACGGCGCCTTGTTCATGGAGACCAGC
GCCAAGGCCGGCTTCAACATCAAGGTTCTCCCAACTTCTTT--TATCTAATGTAGAAGAAT-------------------
---------------------TTATTTTCACTTCGCTTGGGCAAGCAGAAGCATTCTGCAGCTCCACATTTCTCCAGCCA
AACATCTGACCGCGGAACCTGGAACCCTGCTGACTGCAGGCTCTGTTCCGCACGATCGCCGCGTCCCTGCCTGGGATGGA
CGCCCTCTCGTCGGCGAAGCAGGAGGACATGGTGGACATCAACCTGAGGCCCGCCTCCGGGCCAGCAGGCTCAGGCGCGC
CTGGGCAGCAGGAGCAGAAAGCAGGAGGATGCTCTTGCTGAGCTTTGTGTTCTTTTATTAGAGGAGAGATTTTT------
--GA-------------------------------GCAAGAATGTAATTTTGACCAAAACAGATTGCGGACAGAGAAATG
C--AAAATTTGTTAGGCGTGAGAAGAAAAAAACAA---CGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGG
CGGGAATACTTACCACTATACTACAACGACTTGGTGATGATAGGCGGAATGCTGCTTACTAATCGCTAACGACGGTTAAT
TACCTTACATTGTGTGAGCTACTCTCTCCGTTAGATTCTACTATGAATCACGTACGGATGTATATAGATGCATTTTAAGT
GTAGATTCATTCATTTTGTTTCATATGTAGTCACCCTAATGGAATCTCTATAAAGACTTATATTTAGGAACGGAGGGAGT
AGATGTCATGTTTCTGCCTTGCAAAATTCAGAGTGAATTGCAAAAAACCACCACATTGAATCGTAGGTTTGCAGAAAAGA
CTCTTCTACAAATTTGTGCCCGAAAATACTGATTCTTAGCCTAATCTTTTGCATAAAACACTAGTTGATGGCTTTAGCCC
ATTTGATGACGATTATGACAGATGGAGCCCACCATTTGCTGATGTGGCTAACGGTCTTTTTGCCAAAACGCCCTCCCCTC
CCTAAAAAAATTCTCCCCTGAAAAACTACCCTATCCCTGCTCCTCCACCTCCCTCCGGCGCGCCCCCGCCTCCCAGCGCC
GCCACCTCCCTCCCGGCGCGCCCCCGCCCTCCCAGCGCCGCCACCTCCCTTCCCGGCTACGACCCCGACGCGCGGCTCGA
CCCGCCTTGACGGGAAGGAGGAGGGACGAGGCGTGGTGGAGACTGGGCCCGCCGGATCCTGGCGCAGGCCGTCCTTGGAC
GTGGGTTGTGGAGGCGGGGAACATCGGACCCGGCCGGATCTGGCACGTGGTGGCACAGGACGTGGGTGGCAGCGATAGGA
GGTAGTCTGGTCGGCGCGCTAGAGGCGGAGTGGTGGTCGGGGCAGCTGCTCCAGGTAGGCCACCCGGACCGCGCGTTACT
CCGCGGCGGGAGGCGGCGACAGGGCTCGTCTACGCGACCGCCCGGTGCGGTGACCTGCCGGAGCAGACACAAGCGCCCTC
CTCGCCGCCAAGTTCAGCAGGGGCTTCGCGTCCACCGCCGCCGAGCGGGTTGCGCGCCGCGCCTCGGGCTCAACCTCTGG
CGCCCTTGCTCGGCGTCCGCGCCAGCAAGAGCAGGCTCGCCTGCGCCTTGAGGATGCGCTTGTGCCGCGGCCGTGCTCTC
TGCTCCCATTCCCGGTGACGAGACCCATCAGCCATGGCCGGCGTGCTGCTGCTCTGCTCTCTGGGCAGCCCAAATTCACC
AGCAGCGCCGCGCAGCCCGGCACAAGTAGCGACGGCGGCGCGCAAGCTGCAACAAGCAGCGTCCTCGACGGTGAGCGCGT
GGTGGCCGACGGTACCAAGCGCATGGCGACTCCAAGCCAGCAGCGCTGCCGCGTGCATGAACCAGCCACCGCCTCGTCCT
CTGGTGCTCGTCCCACCACCGCCAGATGCGGCACCACCGGCCAACGCCGATGAGCCAACCTCTTCCCCCCCTCTGGACGG
TGTGGCCATGGCTGGCGACGAGGACCATGAGCGCCGATGCCTCTGCTGCAGGCCGGCGACAAGGAGCTGATTGCGTTTTG
TACTTTTACCTGAAGGGTGACTATGCAAAAATACCAGGGCCCCACATGTCATAATCCAGGTTAAAATGCATAAAACGGTT
GATCAGTGTTTTTTGCAAAAGATTAGGACTAAAATCAGTGTTTTCTGGCACAAATTCGTAGAAGAGTCTTCCCTGCAAAC
CTACGCTTCAATGTGGTGGTTTTTCACAATTCACTCCAAAATTCACCTGCATTGTGTGAGCTAGATGAATTT-------G
ATGATGTACTCTTCGTTTTTGCGCC-------------------------------------------------------
-----------------------------------------------------------TATGGCAGCATGATTCACGAG
CGTAGATTCATGTCGTCTGTTCTGGACGGTGAGTCGGTGAGGCATTTGATGAGTGACTTTTGACTTTTGATTTACCAAGG
CGACCG-TAATCAAGCACGGTGACATAATCAGAGGTGGGTGCATTTGATGAGTGACTTTTGACTTATAATGCACTTGCAA
ATGGTAT------TGCACAAAAAGTATGACTACATATGAGCACTGAACAATAGTCGCTCATGCCTACTTCAGCCTGTTGT
GAGATCATCCTGTTTACGATGACATGAGAACACTTCTTGGTACTCACTTCATGATCGGCCCCTCTCTT------------
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>chr4B_403
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----------------------------------GAGCTTTGCCATCTGGACAAAAGCAGGCTGTTGTCATGGCAAACAT
GCGCAA--TTCCCGTTTAAGAAAGCAGAGGAGGTGATGTTTCAAAAGAAGAACAAGACATCGATGATA------------
--------------ACAACACGTGGCAAATGAGTC------GACATCTCTCGACAAGACTGCAAACGTTTGTTGCAGTTA
GGTCGCCCCCTTTTGGAACGCACCAATTACGTACTCTACTTCTTAACTTGGATTTATGTCCAACAAACTGAACAACTAGT
AGCATTCCCTGCAGAATTAATATGCGAGTTCCAAGCAGGGAAAGTGCTTCGTGGCCAAGGAAGAAAAAGTTACAAGAGAA
GAACAGAAACTTTGA---------------------AGTAGTATTTGCATGGA----TGGCCCGTCAACACACGGGACTC
CATCCGCAGCTGGCTTTGGAAACGTCCAAAGTCGCCTCCTCCCCTTCTCCGTTCAAAGCAAACCTTCTTCTTCTTCTTC-
------CGTCCCCTTTCCACTGGTTTCACGCGTCCAAACCCGATCGAGC------------------ACGCGCCTCCACG
ACTCGATCCAAATCACTCCAGGGAGCATCCAACTCGGAGCAGAAGAG-----ATCGCCCGACTAGCTAGCTCCGGGCCAA
GCAAGCAAGCT----AGCCATGGCGCCGGTGGTGTCGGCGCTGGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGGCGG
TGGGCAAGACCGCCATCATCACCCGCTTCATGTACGACAAGTTCGACGCCACCTACCAGGTCTCTTCCTCTTCGGTTA--
----------ATTTGCAAAGCTCCC----GATCGATTGATCGCCCCAACCTCGTACGATTGGCAAATGAATTCTGACCGT
CTGCTGTGGCTCTGTGTGCAGGCGACCATCGGGATCGATTTCCTCTCCAAGACCATGTACCTCGAGGACCGCACGGTTCG
CCTGCAGCTATGGTATGCAATACTAGTTTCCTTTTGGTAGCCTCCTTTAGGCGTTGTTTGGATAGCAAGTACTAGTAATG
GATTTATAGAAAA------------------------CAAATTTTTAGCGGGTTTTTTACAAAATCTGTTTTGCTTAC--
--------------------------------------------------------------------------------
---------------TTTTTTTTTTACGAAGAATCAGTTTGTAGAAAAAGTTATTTGGATTTGGAAAGTGTAAGACAGCT
CTATGCAGTTCCTTGTTTGGTCGAAGTCGTCTTTTTCAAAAATCTAGATAATTTTATAATAGTACTACTTTTGTTCCTAA
ATATAAGACGCTTTTGCAATTCAATTGAAGTGCAAAAGCATCTTATATTTAGGTTTGAAGTGCAAAATCGTCTTATATTT
AGGAACAAAGGGTGTAGTTCTTAACTGTTTCTTTTAGAGAAACCTGAACCGCAAGTCCTGAAATTATGCCTGGCACATTG
CGAAAACAACACATACGAGATACCAGTAATATTTTTCCCTTTTCCTGAGGACTTGAGATGCCGGAAACATGCTTGCACAT
GTCAAATGTGAAAATCTCCAAGGGTGACATAGTTGTTTGTAACTGTGAAAATGTGCAGGGACACGGCTGGGCAGGAGAGG
TTCCGGAGCCTGATTCCAAGCTACATCAGAGACTCTTCGGTCGCGGTCATCGTCTACGACGTAACAGGCAAGTTACCTGT
TTCTAC--------AAAATACTCGCCAGCAGAATATGTAGCTAATTTGCACTGCACTAGAAAGTAGTTTTCCAATCTGAA
ATTTATTTTTGAAACTGTTTGCTACT-----GACGCATGAAATCTGAGCAGACATATAGATGAATCAGTT----------
----------------------------------TGAACTATTTCAGTTGAGGGTACTTAGTTACAGTGACATATTCAAC
CACGGAGCTGCATCTGATGATATGAAGAAAGCACACCAAC----ATGTATCACCCTCGTACACTGACAGCCTCATAC-CA
CCA------TTGTTTTCTGCAGACACGCAATCGTTTCTGCATACATCGAAGTGGATCGACGAAGTGAACACGGCGAGAGG
CAAAGATGTGCTGATCGTGCTCGTCGGAAACAAAACAGACCTCGTTGACCAGAGGTACGTACACTATACATACATATCCC
TGAATCTCTGTGGAGAAAGCCACATCGCACCAACCTTGGCGA---TTCATTTTCTTCCGTTTGTTCACCTGAATGAAT-G
TTGCCGCCTCCAGGCAAGTGCCCACGGACGAAGGGGAAGCCAAGGCCAAGGAGCATGGCGCCTTGTTCATGGAGACCAGC
GCGAAGGCCGGCTTCAACATCAAGGTTCTCTCAGCTTCTTTTATATCTAATGTAGAAGAAT-------------------
---------------------TCATTTTCACTAG----------------GCAATCTGCAGCTCCACATTTCTCAAGCAA
AACATCTGACCGCGGAACCTGGAACCCTG---ACTGCAGGCGCTGTTCCGCACGATCGCCACGTCCCTGCCTGGGATGGA
CGCTCTCCCGTCGGCCAAGCAGGAGGACATGGTGGACATCAATCTCAGGCCTGCCTCCGGGCCAGCAGGCTCAGGCGCGC
CTGGGCAGCAGGAGCAGAAAGCAGGAGGATGCTCTTGCTGAGTTTTGTGTTCTTTTATTAGAGGAGAGATTTGTGCATCC
CTTGCAGGATTGCAGTGGTACATCGCAGGGCTGCTGCAAGAATGTAATTTTGACCAAAACAGATTGCGGACAGA--AATG
C--AAAAATTGCTAGGCGTGGCAAGAAACAAAAAA-TTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGG
CGGGAATACTTACCACTATACTACAACGACTTGGTGACGATTGGCGGAATGCTGCTTACTAATCGGGGAAGATGCTTAGT
TACTCGTGTGCCTTCGGTGC------------------------------------------------------------
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---TGCCATGTTTCTGCCTTGCAC--------------------------------------------------------
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---------------------------------------AATTCACCTCCATTGTGTGAGCTAGATGAATGGATGATCCG
ATGATGTACTCTTCTTTTCACAGAACTACAAGAGAGAAAACGCCAGCCTGATCCTAGATTTATTCAGCTTTAGTCTAGGA
TTAACAGCCTGATTAACTGCAAAAGCAAAAATT--CAGTGACGTACTATTATGTCCAAGTATGGCAGCATGATTCACGAG
CGTAGATTCATGTCGTCCGTTCTGGACGGTGAGTCGGTGAGGCATTTGATGAGTGACTTTTGACTTTTGATTTACCAAGG
CGACCGCTAATCAAGCAGGGTGACATAATCAGAAGTGGGTGCATTTGATGAGTGACTTTTGACTTATAATGCACTTGCAA
TTTGCAAATGGTATGCGCAAAAAGTATGACTACATATGAGCACAGAACAATAGTCGC-----------------------
------------------------------------------------TCATGATCGGCCCCTCTCTTCACCAAGACTAT
CAACCCTACCCAGTGAGGC----TCTCAATAAATAGTTTAGATTGAACGAACAATAA-----------------------
------------------------------------------------------------TACTTTTCTTTCAATCATAG
AACACTAACCAGA---------------------------------------------
>SNPs
-----S---S-S--S-S-----------------S------------------------SS----------------S--
---------------S------------------------------------------------------SSS-------
S----S----------------------S-------------------------S-S--------------------S--
--------------------S-------------------------------S--SS------S------S----S----
-S--S------------S-SSS----------SS-S--S-S---S-S------S---------S-----SSS-SSSS-SS
S-SS-SS-------------------------------------------------------------------------
----------------------------------------------S---------S----S------SSSSSS-S-SSS
SSSSS-SS-------------S-----------S-------SS---------S----S-SS--S--SSSSSSSSSSSSSS
SSSSSSSSSSSSSS------S----S------S--SSSSSS-----------------------S---S-----------
------------------------S-----------------------------------S------SSSSSSSS-----
-----------------------------------------------------------------------S--------
-------------S------SSSSSSSSSSSSSSSS-------------------------S------------------
-------------------S----------------S-S--------------------------S-------------S
SSSSSS------------------------------S-------------------------------------------
-------------SS--------------------------------SSSSS----------------------------
----------SSSSS---S-------------------------------------------------------------
------------------------------------------------------------------------S-------
-------------------------SSSS--------------------------------------------------S
--------------------------------------------------------------------------------
---S--------------S--S------------------------------------------S---------------
-----S------SS-S-SSSSS------------------------------------S----S------S----S----
------SSSSSS---S-----S-------S-----------------S----S--------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS--S-----S------------S----S--------------------------------------
--------------------------------------S-----S-----------SS---SS-----------------
--------------------------------------------------------------------------------
------------------------------------------------SSS--S---------------S----------
-----SS-SSSSS-----------------S----S----SS--SSS---------------------------------
--------------------------------------------------------------------------------
-----------------S-----------------------------S--------------------------------
S-S-SSSSSSSSSS--S-------------S----S-------------------------------S-S--S----S--
----S----S------SS-SSS-SSSSSSSS--S-----------S-----------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S------S----------S-----
-----------------S----------------------SSSS--S--------------------------S------
---SSSSSS--S----S------------------------------S--------------------------------
------S--------S--------------S-----------------S----------S-S----------------S-
------------------------S----------------SSSS-------S----S-------SSSS-SSSSSS-SS-
-----S-S-S----------S----------------------------------------S------------------
-------------------------------------S----S------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS--SS----S-S------------------S----S----S-----S-------------
------------S-S--S--S---------------------S-------S------------SS---S-----S-----
---S-----------------------------------------------S--------------------------SS
-S-S---------------------------S------------------------------------S--SSS-SSSSS
-S--------------------------------------------------S---------------------------
SSS------SS-------------SS---------S--------------------------------------------
------------------------------------------SS-S-----S---SS---------S--S------S---
----------------S---------------------------------------------------------------
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-------------------------------S--S---------------------S--------------------S--
-------------------------------SSSS------------S--------------------------------
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----------------------------S-------------------------------------------------S-
-----S--------------------------------------------------------------------------
--S---S----------S-S----------------------S------------S--S-----S---------------
-------------------SSSS-------------------------S--------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1172
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CTCGGAGCAGAAGAGATCGC----------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------
>reverse_2504
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-----------------------GCGGGGCAGTCTGAACTATT-------------------------------------
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----------------------------------------------------------
>forward_1387
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-------TCGATTTGCAAAGCTCCCCA-----------------------------------------------------
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----------------------------------------------------------
>reverse_3577
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--------------------------------------------------------CACTAATCGGCAAGGACGGT----
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----------------------------------------------------------
