Multiple sequence alignment - TraesCS4A01G364700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G364700 chr4A 100.000 1947 0 0 818 2764 637966934 637964988 0.000000e+00 3596.0
1 TraesCS4A01G364700 chr4A 100.000 513 0 0 1 513 637967751 637967239 0.000000e+00 948.0
2 TraesCS4A01G364700 chr4A 80.769 260 35 9 6 260 637982405 637982156 3.630000e-44 189.0
3 TraesCS4A01G364700 chr5B 90.685 891 48 14 818 1675 673988647 673989535 0.000000e+00 1153.0
4 TraesCS4A01G364700 chr5B 85.968 506 31 17 1676 2164 673989672 673990154 3.180000e-139 505.0
5 TraesCS4A01G364700 chr5B 84.130 523 45 21 12 509 673988081 673988590 3.220000e-129 472.0
6 TraesCS4A01G364700 chr5D 92.985 784 34 10 900 1675 533912994 533913764 0.000000e+00 1123.0
7 TraesCS4A01G364700 chr5D 91.429 350 15 6 1682 2024 533913911 533914252 1.500000e-127 466.0
8 TraesCS4A01G364700 chr5D 82.729 469 36 19 1 441 533911958 533912409 2.600000e-100 375.0
9 TraesCS4A01G364700 chr5D 80.094 427 25 27 2240 2620 533914561 533914973 2.110000e-66 263.0
10 TraesCS4A01G364700 chr3B 90.278 72 6 1 1348 1418 822984505 822984576 2.930000e-15 93.5
11 TraesCS4A01G364700 chr3B 92.982 57 4 0 1172 1228 822984291 822984347 1.760000e-12 84.2
12 TraesCS4A01G364700 chr3D 84.615 91 11 2 1138 1228 613747841 613747928 1.360000e-13 87.9
13 TraesCS4A01G364700 chr3A 92.982 57 4 0 1172 1228 749415195 749415251 1.760000e-12 84.2
14 TraesCS4A01G364700 chr3A 88.571 70 7 1 1350 1418 749415377 749415446 1.760000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G364700 chr4A 637964988 637967751 2763 True 2272.00 3596 100.000000 1 2764 2 chr4A.!!$R2 2763
1 TraesCS4A01G364700 chr5B 673988081 673990154 2073 False 710.00 1153 86.927667 12 2164 3 chr5B.!!$F1 2152
2 TraesCS4A01G364700 chr5D 533911958 533914973 3015 False 556.75 1123 86.809250 1 2620 4 chr5D.!!$F1 2619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 224 0.892358 ACCATCATCCATCCATGCGC 60.892 55.0 0.0 0.0 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2799 0.107945 ATCTGGAGCCGCAAAGACTC 60.108 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 27 6.289064 CAGGTACCCCAATGTAACTTCTATC 58.711 44.000 8.74 0.00 36.63 2.08
41 44 6.942576 ACTTCTATCATGTTTATATGGCACCC 59.057 38.462 0.00 0.00 0.00 4.61
75 79 2.415893 GCACAATCGCAATAAGCCTTGT 60.416 45.455 0.00 0.00 42.81 3.16
133 137 2.156310 CACACACAGATGACATCACACG 59.844 50.000 17.57 5.58 0.00 4.49
137 141 2.600420 CACAGATGACATCACACGCTAC 59.400 50.000 17.57 0.00 0.00 3.58
170 186 6.868339 ACACAAACCACAAAGAAAGAAAGAAG 59.132 34.615 0.00 0.00 0.00 2.85
206 222 1.254026 CCACCATCATCCATCCATGC 58.746 55.000 0.00 0.00 0.00 4.06
208 224 0.892358 ACCATCATCCATCCATGCGC 60.892 55.000 0.00 0.00 0.00 6.09
228 244 4.010349 CGCTCTAAAACCTTCCCAAATCT 58.990 43.478 0.00 0.00 0.00 2.40
265 307 1.290009 CCGAAAAGCCCCAAAGCAG 59.710 57.895 0.00 0.00 34.23 4.24
284 326 2.411069 CAGTCATCACTCGACAAAGCAG 59.589 50.000 0.00 0.00 35.77 4.24
311 362 3.624900 CGGCGATACATACATATACGGG 58.375 50.000 0.00 0.00 0.00 5.28
313 364 3.040795 GCGATACATACATATACGGGCG 58.959 50.000 0.00 0.00 0.00 6.13
406 463 1.477558 CCTCCCCCATTTTCAGATCCG 60.478 57.143 0.00 0.00 0.00 4.18
484 910 1.954994 ATTCCCCTCCTCCCTCCCT 60.955 63.158 0.00 0.00 0.00 4.20
485 911 1.979389 ATTCCCCTCCTCCCTCCCTC 61.979 65.000 0.00 0.00 0.00 4.30
486 912 4.179599 CCCCTCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
487 913 4.179599 CCCTCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
488 914 4.179599 CCTCCTCCCTCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
489 915 3.039526 CTCCTCCCTCCCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
490 916 3.036959 TCCTCCCTCCCTCCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
491 917 4.179599 CCTCCCTCCCTCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
492 918 4.179599 CTCCCTCCCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
874 1312 3.157217 GAGATCTGTGGCGGCGGAT 62.157 63.158 9.78 8.03 37.20 4.18
1038 1495 0.397675 AGGTGAGCTGATCCGATCCA 60.398 55.000 5.91 0.00 0.00 3.41
1066 1523 0.108520 TTTCCGTGCCCGATCTGTAC 60.109 55.000 0.00 0.00 35.63 2.90
1088 1545 0.890683 GTGAAGCAGGGATTTGGTGG 59.109 55.000 0.00 0.00 0.00 4.61
1118 1575 2.662791 CGTGTTTTGCCTCGATCTGTTG 60.663 50.000 0.00 0.00 0.00 3.33
1268 1725 4.206697 AGATCCCTCCCGATCTGC 57.793 61.111 0.40 0.00 45.79 4.26
1270 1727 0.780637 AGATCCCTCCCGATCTGCTA 59.219 55.000 0.40 0.00 45.79 3.49
1286 1743 4.362677 TCTGCTATCTAACCCCTCTGTTT 58.637 43.478 0.00 0.00 0.00 2.83
1287 1744 5.525484 TCTGCTATCTAACCCCTCTGTTTA 58.475 41.667 0.00 0.00 0.00 2.01
1288 1745 5.363005 TCTGCTATCTAACCCCTCTGTTTAC 59.637 44.000 0.00 0.00 0.00 2.01
1289 1746 4.407945 TGCTATCTAACCCCTCTGTTTACC 59.592 45.833 0.00 0.00 0.00 2.85
1301 1758 0.616371 TGTTTACCCCCGATCTGTGG 59.384 55.000 0.00 0.00 0.00 4.17
1304 1761 1.364269 TTACCCCCGATCTGTGGTTT 58.636 50.000 0.00 0.00 32.27 3.27
1305 1762 0.906775 TACCCCCGATCTGTGGTTTC 59.093 55.000 0.00 0.00 32.27 2.78
1306 1763 1.077716 CCCCCGATCTGTGGTTTCC 60.078 63.158 0.00 0.00 0.00 3.13
1338 1795 0.179189 CGGCGGCTGATCTGTTTTTC 60.179 55.000 7.61 0.00 0.00 2.29
1339 1796 1.168714 GGCGGCTGATCTGTTTTTCT 58.831 50.000 0.00 0.00 0.00 2.52
1340 1797 1.131315 GGCGGCTGATCTGTTTTTCTC 59.869 52.381 0.00 0.00 0.00 2.87
1531 2017 2.684843 CGCAGCAGGCCAAGAAGAC 61.685 63.158 5.01 0.00 40.31 3.01
1538 2024 1.006571 GGCCAAGAAGACGACGACA 60.007 57.895 0.00 0.00 0.00 4.35
1675 2161 2.080536 CCATCCTCCTCATGGCCCA 61.081 63.158 0.00 0.00 34.59 5.36
1676 2162 1.454976 CATCCTCCTCATGGCCCAG 59.545 63.158 0.00 0.00 0.00 4.45
1677 2163 2.459086 ATCCTCCTCATGGCCCAGC 61.459 63.158 0.00 0.00 0.00 4.85
1678 2164 3.414193 CCTCCTCATGGCCCAGCA 61.414 66.667 0.00 0.00 0.00 4.41
1679 2165 2.679092 CTCCTCATGGCCCAGCAA 59.321 61.111 0.00 0.00 0.00 3.91
1743 2376 0.112412 TCCCCCTTGTTCTTTCCTGC 59.888 55.000 0.00 0.00 0.00 4.85
1766 2399 4.766404 AGTTTTTCCGGCTGATTAGTTG 57.234 40.909 0.00 0.00 0.00 3.16
1769 2402 4.497473 TTTTCCGGCTGATTAGTTGTTG 57.503 40.909 0.00 0.00 0.00 3.33
1775 2408 5.353123 TCCGGCTGATTAGTTGTTGAATAAC 59.647 40.000 0.00 0.00 37.32 1.89
1795 2428 7.713764 ATAACGAATGAATGAACGATGATGA 57.286 32.000 0.00 0.00 0.00 2.92
1796 2429 6.609237 AACGAATGAATGAACGATGATGAT 57.391 33.333 0.00 0.00 0.00 2.45
1797 2430 5.982324 ACGAATGAATGAACGATGATGATG 58.018 37.500 0.00 0.00 0.00 3.07
1798 2431 4.844522 CGAATGAATGAACGATGATGATGC 59.155 41.667 0.00 0.00 0.00 3.91
1799 2432 5.559417 CGAATGAATGAACGATGATGATGCA 60.559 40.000 0.00 0.00 0.00 3.96
1800 2433 4.806342 TGAATGAACGATGATGATGCAG 57.194 40.909 0.00 0.00 0.00 4.41
1801 2434 3.002965 TGAATGAACGATGATGATGCAGC 59.997 43.478 0.00 0.00 0.00 5.25
1802 2435 2.320745 TGAACGATGATGATGCAGCT 57.679 45.000 2.53 0.00 0.00 4.24
1838 2471 1.845809 CTGTTCTTCGCGCCAGCTTT 61.846 55.000 0.00 0.00 42.32 3.51
1993 2636 2.022195 CCATCTTTGTGGCTCCAGATG 58.978 52.381 14.44 14.44 34.61 2.90
1996 2734 0.524862 CTTTGTGGCTCCAGATGTGC 59.475 55.000 0.00 0.00 0.00 4.57
2001 2739 2.117156 GGCTCCAGATGTGCGCAAT 61.117 57.895 14.00 8.37 34.26 3.56
2002 2740 1.063649 GCTCCAGATGTGCGCAATG 59.936 57.895 14.00 9.02 0.00 2.82
2003 2741 1.063649 CTCCAGATGTGCGCAATGC 59.936 57.895 14.00 3.71 46.70 3.56
2004 2742 1.374343 CTCCAGATGTGCGCAATGCT 61.374 55.000 14.00 6.48 46.63 3.79
2005 2743 1.063649 CCAGATGTGCGCAATGCTC 59.936 57.895 14.00 6.66 46.63 4.26
2006 2744 1.063649 CAGATGTGCGCAATGCTCC 59.936 57.895 14.00 0.00 46.63 4.70
2007 2745 2.117156 AGATGTGCGCAATGCTCCC 61.117 57.895 14.00 0.00 46.63 4.30
2008 2746 3.129913 GATGTGCGCAATGCTCCCC 62.130 63.158 14.00 0.00 46.63 4.81
2011 2749 4.365111 TGCGCAATGCTCCCCCTT 62.365 61.111 8.16 0.00 46.63 3.95
2012 2750 3.070576 GCGCAATGCTCCCCCTTT 61.071 61.111 0.30 0.00 41.73 3.11
2013 2751 2.649129 GCGCAATGCTCCCCCTTTT 61.649 57.895 0.30 0.00 41.73 2.27
2014 2752 1.974543 CGCAATGCTCCCCCTTTTT 59.025 52.632 2.94 0.00 0.00 1.94
2015 2753 0.108662 CGCAATGCTCCCCCTTTTTC 60.109 55.000 2.94 0.00 0.00 2.29
2016 2754 0.975887 GCAATGCTCCCCCTTTTTCA 59.024 50.000 0.00 0.00 0.00 2.69
2017 2755 1.338105 GCAATGCTCCCCCTTTTTCAC 60.338 52.381 0.00 0.00 0.00 3.18
2018 2756 1.276138 CAATGCTCCCCCTTTTTCACC 59.724 52.381 0.00 0.00 0.00 4.02
2019 2757 0.786435 ATGCTCCCCCTTTTTCACCT 59.214 50.000 0.00 0.00 0.00 4.00
2020 2758 0.178964 TGCTCCCCCTTTTTCACCTG 60.179 55.000 0.00 0.00 0.00 4.00
2021 2759 0.112412 GCTCCCCCTTTTTCACCTGA 59.888 55.000 0.00 0.00 0.00 3.86
2022 2760 1.480498 GCTCCCCCTTTTTCACCTGAA 60.480 52.381 0.00 0.00 0.00 3.02
2023 2761 2.957474 CTCCCCCTTTTTCACCTGAAA 58.043 47.619 0.00 0.00 41.77 2.69
2024 2762 3.510459 CTCCCCCTTTTTCACCTGAAAT 58.490 45.455 1.35 0.00 42.83 2.17
2025 2763 3.506398 TCCCCCTTTTTCACCTGAAATC 58.494 45.455 1.35 0.00 42.83 2.17
2026 2764 3.142028 TCCCCCTTTTTCACCTGAAATCT 59.858 43.478 1.35 0.00 42.83 2.40
2027 2765 4.355588 TCCCCCTTTTTCACCTGAAATCTA 59.644 41.667 1.35 0.00 42.83 1.98
2028 2766 5.016245 TCCCCCTTTTTCACCTGAAATCTAT 59.984 40.000 1.35 0.00 42.83 1.98
2029 2767 5.360999 CCCCCTTTTTCACCTGAAATCTATC 59.639 44.000 1.35 0.00 42.83 2.08
2030 2768 5.360999 CCCCTTTTTCACCTGAAATCTATCC 59.639 44.000 1.35 0.00 42.83 2.59
2031 2769 5.360999 CCCTTTTTCACCTGAAATCTATCCC 59.639 44.000 1.35 0.00 42.83 3.85
2032 2770 5.951747 CCTTTTTCACCTGAAATCTATCCCA 59.048 40.000 1.35 0.00 42.83 4.37
2033 2771 6.096001 CCTTTTTCACCTGAAATCTATCCCAG 59.904 42.308 1.35 0.00 42.83 4.45
2034 2772 3.845781 TCACCTGAAATCTATCCCAGC 57.154 47.619 0.00 0.00 0.00 4.85
2035 2773 3.387962 TCACCTGAAATCTATCCCAGCT 58.612 45.455 0.00 0.00 0.00 4.24
2036 2774 3.135348 TCACCTGAAATCTATCCCAGCTG 59.865 47.826 6.78 6.78 0.00 4.24
2037 2775 3.135348 CACCTGAAATCTATCCCAGCTGA 59.865 47.826 17.39 0.00 0.00 4.26
2038 2776 3.979347 ACCTGAAATCTATCCCAGCTGAT 59.021 43.478 17.39 3.93 0.00 2.90
2039 2777 4.041444 ACCTGAAATCTATCCCAGCTGATC 59.959 45.833 17.39 0.00 0.00 2.92
2040 2778 4.286549 CCTGAAATCTATCCCAGCTGATCT 59.713 45.833 17.39 0.85 0.00 2.75
2041 2779 5.224821 TGAAATCTATCCCAGCTGATCTG 57.775 43.478 17.39 0.00 42.49 2.90
2042 2780 4.903649 TGAAATCTATCCCAGCTGATCTGA 59.096 41.667 17.39 6.48 45.72 3.27
2043 2781 5.546887 TGAAATCTATCCCAGCTGATCTGAT 59.453 40.000 17.39 13.33 45.72 2.90
2044 2782 5.423704 AATCTATCCCAGCTGATCTGATG 57.576 43.478 17.39 10.58 45.72 3.07
2045 2783 3.854437 TCTATCCCAGCTGATCTGATGT 58.146 45.455 17.39 1.62 45.72 3.06
2046 2784 4.229639 TCTATCCCAGCTGATCTGATGTT 58.770 43.478 17.39 4.33 45.72 2.71
2047 2785 2.704464 TCCCAGCTGATCTGATGTTG 57.296 50.000 17.39 7.48 45.72 3.33
2048 2786 2.190538 TCCCAGCTGATCTGATGTTGA 58.809 47.619 17.39 9.43 45.72 3.18
2049 2787 2.775960 TCCCAGCTGATCTGATGTTGAT 59.224 45.455 17.39 0.00 45.72 2.57
2050 2788 3.139850 CCCAGCTGATCTGATGTTGATC 58.860 50.000 17.39 0.00 45.72 2.92
2051 2789 3.181453 CCCAGCTGATCTGATGTTGATCT 60.181 47.826 17.39 0.00 45.72 2.75
2052 2790 4.452825 CCAGCTGATCTGATGTTGATCTT 58.547 43.478 17.39 0.00 45.72 2.40
2053 2791 4.273724 CCAGCTGATCTGATGTTGATCTTG 59.726 45.833 17.39 0.00 45.72 3.02
2054 2792 5.116882 CAGCTGATCTGATGTTGATCTTGA 58.883 41.667 8.42 0.00 45.72 3.02
2055 2793 5.760743 CAGCTGATCTGATGTTGATCTTGAT 59.239 40.000 8.42 0.00 45.72 2.57
2056 2794 5.760743 AGCTGATCTGATGTTGATCTTGATG 59.239 40.000 3.42 0.00 40.51 3.07
2057 2795 5.527951 GCTGATCTGATGTTGATCTTGATGT 59.472 40.000 3.42 0.00 40.51 3.06
2058 2796 6.511929 GCTGATCTGATGTTGATCTTGATGTG 60.512 42.308 3.42 0.00 40.51 3.21
2059 2797 5.820947 TGATCTGATGTTGATCTTGATGTGG 59.179 40.000 0.00 0.00 40.51 4.17
2060 2798 5.169992 TCTGATGTTGATCTTGATGTGGT 57.830 39.130 0.00 0.00 0.00 4.16
2061 2799 4.939439 TCTGATGTTGATCTTGATGTGGTG 59.061 41.667 0.00 0.00 0.00 4.17
2062 2800 4.909001 TGATGTTGATCTTGATGTGGTGA 58.091 39.130 0.00 0.00 0.00 4.02
2063 2801 4.939439 TGATGTTGATCTTGATGTGGTGAG 59.061 41.667 0.00 0.00 0.00 3.51
2064 2802 4.356405 TGTTGATCTTGATGTGGTGAGT 57.644 40.909 0.00 0.00 0.00 3.41
2065 2803 4.318332 TGTTGATCTTGATGTGGTGAGTC 58.682 43.478 0.00 0.00 0.00 3.36
2066 2804 4.040829 TGTTGATCTTGATGTGGTGAGTCT 59.959 41.667 0.00 0.00 0.00 3.24
2067 2805 4.897509 TGATCTTGATGTGGTGAGTCTT 57.102 40.909 0.00 0.00 0.00 3.01
2068 2806 5.233083 TGATCTTGATGTGGTGAGTCTTT 57.767 39.130 0.00 0.00 0.00 2.52
2069 2807 4.999311 TGATCTTGATGTGGTGAGTCTTTG 59.001 41.667 0.00 0.00 0.00 2.77
2070 2808 3.141398 TCTTGATGTGGTGAGTCTTTGC 58.859 45.455 0.00 0.00 0.00 3.68
2071 2809 1.511850 TGATGTGGTGAGTCTTTGCG 58.488 50.000 0.00 0.00 0.00 4.85
2072 2810 0.798776 GATGTGGTGAGTCTTTGCGG 59.201 55.000 0.00 0.00 0.00 5.69
2073 2811 1.237285 ATGTGGTGAGTCTTTGCGGC 61.237 55.000 0.00 0.00 0.00 6.53
2074 2812 1.598130 GTGGTGAGTCTTTGCGGCT 60.598 57.895 0.00 0.00 0.00 5.52
2075 2813 1.301716 TGGTGAGTCTTTGCGGCTC 60.302 57.895 0.00 0.00 0.00 4.70
2076 2814 2.035442 GGTGAGTCTTTGCGGCTCC 61.035 63.158 0.00 0.00 0.00 4.70
2077 2815 1.301716 GTGAGTCTTTGCGGCTCCA 60.302 57.895 0.00 0.00 0.00 3.86
2078 2816 1.004560 TGAGTCTTTGCGGCTCCAG 60.005 57.895 0.00 0.00 0.00 3.86
2079 2817 1.293498 GAGTCTTTGCGGCTCCAGA 59.707 57.895 0.00 0.00 0.00 3.86
2080 2818 0.107945 GAGTCTTTGCGGCTCCAGAT 60.108 55.000 0.00 0.00 0.00 2.90
2081 2819 0.107945 AGTCTTTGCGGCTCCAGATC 60.108 55.000 0.00 0.00 0.00 2.75
2082 2820 0.107945 GTCTTTGCGGCTCCAGATCT 60.108 55.000 0.00 0.00 0.00 2.75
2083 2821 0.107993 TCTTTGCGGCTCCAGATCTG 60.108 55.000 16.24 16.24 0.00 2.90
2084 2822 0.392193 CTTTGCGGCTCCAGATCTGT 60.392 55.000 21.11 0.00 0.00 3.41
2085 2823 0.674581 TTTGCGGCTCCAGATCTGTG 60.675 55.000 21.11 14.06 0.00 3.66
2086 2824 2.894387 GCGGCTCCAGATCTGTGC 60.894 66.667 21.11 21.77 0.00 4.57
2087 2825 2.580815 CGGCTCCAGATCTGTGCA 59.419 61.111 27.69 11.50 32.45 4.57
2088 2826 1.078918 CGGCTCCAGATCTGTGCAA 60.079 57.895 27.69 10.69 32.45 4.08
2089 2827 1.088340 CGGCTCCAGATCTGTGCAAG 61.088 60.000 27.69 20.45 32.45 4.01
2090 2828 1.375098 GGCTCCAGATCTGTGCAAGC 61.375 60.000 27.69 23.89 32.45 4.01
2091 2829 0.675837 GCTCCAGATCTGTGCAAGCA 60.676 55.000 24.20 0.00 0.00 3.91
2103 2841 2.992242 GTGCAAGCACACTCTCTTTTC 58.008 47.619 19.47 0.00 45.53 2.29
2124 2862 0.251341 ACCTGAAAGCGGGCTTCATT 60.251 50.000 6.35 0.00 44.98 2.57
2196 3055 0.661020 CCGGTGATGGTATTTTCCGC 59.339 55.000 0.00 0.00 37.17 5.54
2197 3056 0.661020 CGGTGATGGTATTTTCCGCC 59.339 55.000 0.00 0.00 0.00 6.13
2224 3094 1.377725 CAGGCAGTCCATGGTGGTC 60.378 63.158 12.58 4.06 39.03 4.02
2226 3096 1.136329 AGGCAGTCCATGGTGGTCTT 61.136 55.000 12.58 0.00 39.03 3.01
2229 3099 1.545428 GCAGTCCATGGTGGTCTTTCA 60.545 52.381 12.58 0.00 39.03 2.69
2230 3100 2.154462 CAGTCCATGGTGGTCTTTCAC 58.846 52.381 12.58 0.00 39.03 3.18
2238 3158 3.655481 GGTCTTTCACCACTGCGG 58.345 61.111 0.00 0.00 45.98 5.69
2264 3184 2.607442 TCACCAGCTAGCAGCCCA 60.607 61.111 18.83 0.00 43.77 5.36
2319 3248 4.528987 GGAGGAATCCAACCCTATCTACTC 59.471 50.000 0.61 0.00 31.84 2.59
2320 3249 4.494591 AGGAATCCAACCCTATCTACTCC 58.505 47.826 0.61 0.00 0.00 3.85
2321 3250 4.173043 AGGAATCCAACCCTATCTACTCCT 59.827 45.833 0.61 0.00 0.00 3.69
2322 3251 5.378985 AGGAATCCAACCCTATCTACTCCTA 59.621 44.000 0.61 0.00 0.00 2.94
2323 3252 5.481122 GGAATCCAACCCTATCTACTCCTAC 59.519 48.000 0.00 0.00 0.00 3.18
2324 3253 5.952161 ATCCAACCCTATCTACTCCTACT 57.048 43.478 0.00 0.00 0.00 2.57
2325 3254 5.063017 TCCAACCCTATCTACTCCTACTG 57.937 47.826 0.00 0.00 0.00 2.74
2326 3255 4.140994 TCCAACCCTATCTACTCCTACTGG 60.141 50.000 0.00 0.00 0.00 4.00
2349 3278 2.160721 AGTATCCCGATGTGTGACCT 57.839 50.000 0.00 0.00 0.00 3.85
2391 3328 1.204467 GAAAGGCGGCATGGAATTTGA 59.796 47.619 13.08 0.00 0.00 2.69
2392 3329 1.488390 AAGGCGGCATGGAATTTGAT 58.512 45.000 13.08 0.00 0.00 2.57
2393 3330 1.488390 AGGCGGCATGGAATTTGATT 58.512 45.000 13.08 0.00 0.00 2.57
2394 3331 1.832998 AGGCGGCATGGAATTTGATTT 59.167 42.857 13.08 0.00 0.00 2.17
2395 3332 1.935199 GGCGGCATGGAATTTGATTTG 59.065 47.619 3.07 0.00 0.00 2.32
2400 3337 3.181504 GGCATGGAATTTGATTTGCTTGC 60.182 43.478 0.00 7.66 43.04 4.01
2402 3339 4.436852 GCATGGAATTTGATTTGCTTGCTG 60.437 41.667 8.57 0.00 41.63 4.41
2413 3350 3.970410 CTTGCTGGGGAGGGTGCA 61.970 66.667 0.00 0.00 0.00 4.57
2414 3351 3.933048 CTTGCTGGGGAGGGTGCAG 62.933 68.421 0.00 0.00 0.00 4.41
2423 3360 3.336568 AGGGTGCAGGCAGAGCAT 61.337 61.111 0.00 0.00 44.79 3.79
2428 3365 2.437895 GCAGGCAGAGCATGAGCA 60.438 61.111 7.91 0.00 43.36 4.26
2440 3377 0.750546 CATGAGCACCCCATCCACAG 60.751 60.000 0.00 0.00 0.00 3.66
2487 3428 2.022195 CTCTTATCTTGTCCGTCCCGA 58.978 52.381 0.00 0.00 0.00 5.14
2488 3429 2.022195 TCTTATCTTGTCCGTCCCGAG 58.978 52.381 0.00 0.00 0.00 4.63
2494 3435 3.148279 GTCCGTCCCGAGCCAGAT 61.148 66.667 0.00 0.00 0.00 2.90
2496 3437 4.899239 CCGTCCCGAGCCAGATGC 62.899 72.222 0.00 0.00 41.71 3.91
2524 3490 4.943093 CCATGTTGCGATGGATGGATAATA 59.057 41.667 3.63 0.00 45.24 0.98
2528 3494 6.003326 TGTTGCGATGGATGGATAATAATGT 58.997 36.000 0.00 0.00 0.00 2.71
2532 3498 5.065218 GCGATGGATGGATAATAATGTGACC 59.935 44.000 0.00 0.00 0.00 4.02
2570 3536 1.153229 GGCCCGTGGGTATCTTGTC 60.153 63.158 6.82 0.00 37.65 3.18
2578 3544 1.490490 TGGGTATCTTGTCATCCTGGC 59.510 52.381 0.00 0.00 0.00 4.85
2581 3547 2.216898 GTATCTTGTCATCCTGGCTGC 58.783 52.381 0.00 0.00 0.00 5.25
2607 3573 5.404667 GGTTTGTTCCGTTTTGTTTGTGTTA 59.595 36.000 0.00 0.00 0.00 2.41
2609 3575 7.360185 GGTTTGTTCCGTTTTGTTTGTGTTATT 60.360 33.333 0.00 0.00 0.00 1.40
2610 3576 6.633668 TGTTCCGTTTTGTTTGTGTTATTG 57.366 33.333 0.00 0.00 0.00 1.90
2612 3578 6.645415 TGTTCCGTTTTGTTTGTGTTATTGTT 59.355 30.769 0.00 0.00 0.00 2.83
2614 3580 6.622549 TCCGTTTTGTTTGTGTTATTGTTCT 58.377 32.000 0.00 0.00 0.00 3.01
2615 3581 6.748198 TCCGTTTTGTTTGTGTTATTGTTCTC 59.252 34.615 0.00 0.00 0.00 2.87
2616 3582 6.290851 CCGTTTTGTTTGTGTTATTGTTCTCG 60.291 38.462 0.00 0.00 0.00 4.04
2617 3583 6.249682 CGTTTTGTTTGTGTTATTGTTCTCGT 59.750 34.615 0.00 0.00 0.00 4.18
2619 3585 5.412526 TGTTTGTGTTATTGTTCTCGTCC 57.587 39.130 0.00 0.00 0.00 4.79
2620 3586 5.120399 TGTTTGTGTTATTGTTCTCGTCCT 58.880 37.500 0.00 0.00 0.00 3.85
2621 3587 5.587043 TGTTTGTGTTATTGTTCTCGTCCTT 59.413 36.000 0.00 0.00 0.00 3.36
2622 3588 6.094325 TGTTTGTGTTATTGTTCTCGTCCTTT 59.906 34.615 0.00 0.00 0.00 3.11
2623 3589 6.687081 TTGTGTTATTGTTCTCGTCCTTTT 57.313 33.333 0.00 0.00 0.00 2.27
2624 3590 6.055231 TGTGTTATTGTTCTCGTCCTTTTG 57.945 37.500 0.00 0.00 0.00 2.44
2625 3591 5.587043 TGTGTTATTGTTCTCGTCCTTTTGT 59.413 36.000 0.00 0.00 0.00 2.83
2626 3592 6.094325 TGTGTTATTGTTCTCGTCCTTTTGTT 59.906 34.615 0.00 0.00 0.00 2.83
2627 3593 6.970613 GTGTTATTGTTCTCGTCCTTTTGTTT 59.029 34.615 0.00 0.00 0.00 2.83
2628 3594 7.486870 GTGTTATTGTTCTCGTCCTTTTGTTTT 59.513 33.333 0.00 0.00 0.00 2.43
2629 3595 7.486551 TGTTATTGTTCTCGTCCTTTTGTTTTG 59.513 33.333 0.00 0.00 0.00 2.44
2630 3596 5.379732 TTGTTCTCGTCCTTTTGTTTTGT 57.620 34.783 0.00 0.00 0.00 2.83
2631 3597 5.379732 TGTTCTCGTCCTTTTGTTTTGTT 57.620 34.783 0.00 0.00 0.00 2.83
2632 3598 5.774630 TGTTCTCGTCCTTTTGTTTTGTTT 58.225 33.333 0.00 0.00 0.00 2.83
2633 3599 6.217294 TGTTCTCGTCCTTTTGTTTTGTTTT 58.783 32.000 0.00 0.00 0.00 2.43
2634 3600 6.144724 TGTTCTCGTCCTTTTGTTTTGTTTTG 59.855 34.615 0.00 0.00 0.00 2.44
2635 3601 5.774630 TCTCGTCCTTTTGTTTTGTTTTGT 58.225 33.333 0.00 0.00 0.00 2.83
2636 3602 6.217294 TCTCGTCCTTTTGTTTTGTTTTGTT 58.783 32.000 0.00 0.00 0.00 2.83
2637 3603 7.368833 TCTCGTCCTTTTGTTTTGTTTTGTTA 58.631 30.769 0.00 0.00 0.00 2.41
2638 3604 7.539366 TCTCGTCCTTTTGTTTTGTTTTGTTAG 59.461 33.333 0.00 0.00 0.00 2.34
2639 3605 7.146648 TCGTCCTTTTGTTTTGTTTTGTTAGT 58.853 30.769 0.00 0.00 0.00 2.24
2640 3606 7.115095 TCGTCCTTTTGTTTTGTTTTGTTAGTG 59.885 33.333 0.00 0.00 0.00 2.74
2641 3607 7.514805 GTCCTTTTGTTTTGTTTTGTTAGTGG 58.485 34.615 0.00 0.00 0.00 4.00
2642 3608 7.171848 GTCCTTTTGTTTTGTTTTGTTAGTGGT 59.828 33.333 0.00 0.00 0.00 4.16
2643 3609 7.171678 TCCTTTTGTTTTGTTTTGTTAGTGGTG 59.828 33.333 0.00 0.00 0.00 4.17
2644 3610 5.847670 TTGTTTTGTTTTGTTAGTGGTGC 57.152 34.783 0.00 0.00 0.00 5.01
2645 3611 5.140747 TGTTTTGTTTTGTTAGTGGTGCT 57.859 34.783 0.00 0.00 0.00 4.40
2646 3612 5.164954 TGTTTTGTTTTGTTAGTGGTGCTC 58.835 37.500 0.00 0.00 0.00 4.26
2647 3613 5.047660 TGTTTTGTTTTGTTAGTGGTGCTCT 60.048 36.000 0.00 0.00 0.00 4.09
2648 3614 4.630894 TTGTTTTGTTAGTGGTGCTCTG 57.369 40.909 0.00 0.00 0.00 3.35
2649 3615 2.357637 TGTTTTGTTAGTGGTGCTCTGC 59.642 45.455 0.00 0.00 0.00 4.26
2650 3616 2.618709 GTTTTGTTAGTGGTGCTCTGCT 59.381 45.455 0.00 0.00 0.00 4.24
2651 3617 2.169832 TTGTTAGTGGTGCTCTGCTC 57.830 50.000 0.00 0.00 0.00 4.26
2652 3618 1.342074 TGTTAGTGGTGCTCTGCTCT 58.658 50.000 0.00 0.00 0.00 4.09
2653 3619 1.273606 TGTTAGTGGTGCTCTGCTCTC 59.726 52.381 0.00 0.00 0.00 3.20
2654 3620 0.898320 TTAGTGGTGCTCTGCTCTCC 59.102 55.000 0.00 0.00 0.00 3.71
2655 3621 0.040351 TAGTGGTGCTCTGCTCTCCT 59.960 55.000 0.00 0.00 0.00 3.69
2656 3622 0.835543 AGTGGTGCTCTGCTCTCCTT 60.836 55.000 0.00 0.00 0.00 3.36
2657 3623 0.390998 GTGGTGCTCTGCTCTCCTTC 60.391 60.000 0.00 0.00 0.00 3.46
2658 3624 1.220477 GGTGCTCTGCTCTCCTTCC 59.780 63.158 0.00 0.00 0.00 3.46
2659 3625 1.548357 GGTGCTCTGCTCTCCTTCCA 61.548 60.000 0.00 0.00 0.00 3.53
2660 3626 0.108233 GTGCTCTGCTCTCCTTCCAG 60.108 60.000 0.00 0.00 0.00 3.86
2661 3627 1.153389 GCTCTGCTCTCCTTCCAGC 60.153 63.158 0.00 0.00 36.08 4.85
2662 3628 1.521616 CTCTGCTCTCCTTCCAGCC 59.478 63.158 0.00 0.00 34.47 4.85
2663 3629 2.186384 CTGCTCTCCTTCCAGCCG 59.814 66.667 0.00 0.00 34.47 5.52
2664 3630 2.283894 TGCTCTCCTTCCAGCCGA 60.284 61.111 0.00 0.00 34.47 5.54
2665 3631 2.185608 GCTCTCCTTCCAGCCGAC 59.814 66.667 0.00 0.00 0.00 4.79
2666 3632 2.492090 CTCTCCTTCCAGCCGACG 59.508 66.667 0.00 0.00 0.00 5.12
2667 3633 3.068691 TCTCCTTCCAGCCGACGG 61.069 66.667 10.29 10.29 0.00 4.79
2686 3652 3.871574 GTGTGCGTGCGTGTGGTT 61.872 61.111 0.00 0.00 0.00 3.67
2687 3653 3.128188 TGTGCGTGCGTGTGGTTT 61.128 55.556 0.00 0.00 0.00 3.27
2688 3654 2.650602 GTGCGTGCGTGTGGTTTG 60.651 61.111 0.00 0.00 0.00 2.93
2689 3655 3.882013 TGCGTGCGTGTGGTTTGG 61.882 61.111 0.00 0.00 0.00 3.28
2690 3656 4.622456 GCGTGCGTGTGGTTTGGG 62.622 66.667 0.00 0.00 0.00 4.12
2691 3657 4.622456 CGTGCGTGTGGTTTGGGC 62.622 66.667 0.00 0.00 0.00 5.36
2692 3658 4.622456 GTGCGTGTGGTTTGGGCG 62.622 66.667 0.00 0.00 0.00 6.13
2694 3660 2.973600 GCGTGTGGTTTGGGCGTA 60.974 61.111 0.00 0.00 0.00 4.42
2695 3661 2.329614 GCGTGTGGTTTGGGCGTAT 61.330 57.895 0.00 0.00 0.00 3.06
2696 3662 1.499949 CGTGTGGTTTGGGCGTATG 59.500 57.895 0.00 0.00 0.00 2.39
2697 3663 0.951525 CGTGTGGTTTGGGCGTATGA 60.952 55.000 0.00 0.00 0.00 2.15
2698 3664 1.459450 GTGTGGTTTGGGCGTATGAT 58.541 50.000 0.00 0.00 0.00 2.45
2699 3665 2.634600 GTGTGGTTTGGGCGTATGATA 58.365 47.619 0.00 0.00 0.00 2.15
2700 3666 3.211045 GTGTGGTTTGGGCGTATGATAT 58.789 45.455 0.00 0.00 0.00 1.63
2701 3667 3.003275 GTGTGGTTTGGGCGTATGATATG 59.997 47.826 0.00 0.00 0.00 1.78
2702 3668 3.118223 TGTGGTTTGGGCGTATGATATGA 60.118 43.478 0.00 0.00 0.00 2.15
2703 3669 4.072131 GTGGTTTGGGCGTATGATATGAT 58.928 43.478 0.00 0.00 0.00 2.45
2704 3670 5.221742 TGTGGTTTGGGCGTATGATATGATA 60.222 40.000 0.00 0.00 0.00 2.15
2705 3671 5.880332 GTGGTTTGGGCGTATGATATGATAT 59.120 40.000 0.00 0.00 0.00 1.63
2706 3672 5.879777 TGGTTTGGGCGTATGATATGATATG 59.120 40.000 0.00 0.00 0.00 1.78
2707 3673 6.112734 GGTTTGGGCGTATGATATGATATGA 58.887 40.000 5.66 0.00 0.00 2.15
2708 3674 6.767902 GGTTTGGGCGTATGATATGATATGAT 59.232 38.462 5.66 0.00 0.00 2.45
2709 3675 7.254898 GGTTTGGGCGTATGATATGATATGATG 60.255 40.741 5.66 0.00 0.00 3.07
2710 3676 6.484364 TGGGCGTATGATATGATATGATGT 57.516 37.500 5.66 0.00 0.00 3.06
2711 3677 6.282930 TGGGCGTATGATATGATATGATGTG 58.717 40.000 5.66 0.00 0.00 3.21
2712 3678 5.698089 GGGCGTATGATATGATATGATGTGG 59.302 44.000 5.66 0.00 0.00 4.17
2713 3679 6.283694 GGCGTATGATATGATATGATGTGGT 58.716 40.000 5.66 0.00 0.00 4.16
2714 3680 6.201615 GGCGTATGATATGATATGATGTGGTG 59.798 42.308 5.66 0.00 0.00 4.17
2715 3681 6.758416 GCGTATGATATGATATGATGTGGTGT 59.242 38.462 5.66 0.00 0.00 4.16
2716 3682 7.920682 GCGTATGATATGATATGATGTGGTGTA 59.079 37.037 5.66 0.00 0.00 2.90
2717 3683 9.237846 CGTATGATATGATATGATGTGGTGTAC 57.762 37.037 0.00 0.00 0.00 2.90
2720 3686 7.614494 TGATATGATATGATGTGGTGTACTGG 58.386 38.462 0.00 0.00 0.00 4.00
2721 3687 5.894298 ATGATATGATGTGGTGTACTGGT 57.106 39.130 0.00 0.00 0.00 4.00
2722 3688 5.276461 TGATATGATGTGGTGTACTGGTC 57.724 43.478 0.00 0.00 0.00 4.02
2723 3689 4.962362 TGATATGATGTGGTGTACTGGTCT 59.038 41.667 0.00 0.00 0.00 3.85
2724 3690 3.616956 ATGATGTGGTGTACTGGTCTG 57.383 47.619 0.00 0.00 0.00 3.51
2725 3691 1.623311 TGATGTGGTGTACTGGTCTGG 59.377 52.381 0.00 0.00 0.00 3.86
2726 3692 1.623811 GATGTGGTGTACTGGTCTGGT 59.376 52.381 0.00 0.00 0.00 4.00
2727 3693 0.756294 TGTGGTGTACTGGTCTGGTG 59.244 55.000 0.00 0.00 0.00 4.17
2728 3694 1.045407 GTGGTGTACTGGTCTGGTGA 58.955 55.000 0.00 0.00 0.00 4.02
2729 3695 1.623811 GTGGTGTACTGGTCTGGTGAT 59.376 52.381 0.00 0.00 0.00 3.06
2730 3696 1.623311 TGGTGTACTGGTCTGGTGATG 59.377 52.381 0.00 0.00 0.00 3.07
2731 3697 1.066143 GGTGTACTGGTCTGGTGATGG 60.066 57.143 0.00 0.00 0.00 3.51
2732 3698 1.899814 GTGTACTGGTCTGGTGATGGA 59.100 52.381 0.00 0.00 0.00 3.41
2733 3699 2.501723 GTGTACTGGTCTGGTGATGGAT 59.498 50.000 0.00 0.00 0.00 3.41
2734 3700 2.766263 TGTACTGGTCTGGTGATGGATC 59.234 50.000 0.00 0.00 0.00 3.36
2735 3701 0.826715 ACTGGTCTGGTGATGGATCG 59.173 55.000 0.00 0.00 0.00 3.69
2736 3702 0.105593 CTGGTCTGGTGATGGATCGG 59.894 60.000 0.00 0.00 0.00 4.18
2737 3703 0.325203 TGGTCTGGTGATGGATCGGA 60.325 55.000 0.00 0.00 0.00 4.55
2738 3704 0.105039 GGTCTGGTGATGGATCGGAC 59.895 60.000 0.00 0.00 0.00 4.79
2739 3705 0.249073 GTCTGGTGATGGATCGGACG 60.249 60.000 0.00 0.00 0.00 4.79
2740 3706 1.068083 CTGGTGATGGATCGGACGG 59.932 63.158 0.00 0.00 0.00 4.79
2741 3707 2.280186 GGTGATGGATCGGACGGC 60.280 66.667 0.00 0.00 0.00 5.68
2742 3708 2.280186 GTGATGGATCGGACGGCC 60.280 66.667 0.00 0.00 0.00 6.13
2756 3722 4.125695 GGCCGCGTCGTCCTACTT 62.126 66.667 4.92 0.00 0.00 2.24
2757 3723 2.126189 GCCGCGTCGTCCTACTTT 60.126 61.111 4.92 0.00 0.00 2.66
2758 3724 2.442188 GCCGCGTCGTCCTACTTTG 61.442 63.158 4.92 0.00 0.00 2.77
2759 3725 2.442188 CCGCGTCGTCCTACTTTGC 61.442 63.158 4.92 0.00 0.00 3.68
2760 3726 2.774951 CGCGTCGTCCTACTTTGCG 61.775 63.158 0.00 0.00 38.04 4.85
2761 3727 1.731969 GCGTCGTCCTACTTTGCGT 60.732 57.895 0.00 0.00 0.00 5.24
2762 3728 0.454957 GCGTCGTCCTACTTTGCGTA 60.455 55.000 0.00 0.00 0.00 4.42
2763 3729 1.796617 GCGTCGTCCTACTTTGCGTAT 60.797 52.381 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.280356 ACATGATAGAAGTTACATTGGGGTAC 58.720 38.462 0.00 0.00 0.00 3.34
6 7 7.645058 AAACATGATAGAAGTTACATTGGGG 57.355 36.000 0.00 0.00 0.00 4.96
17 20 7.120285 CAGGGTGCCATATAAACATGATAGAAG 59.880 40.741 0.00 0.00 0.00 2.85
20 23 6.240894 ACAGGGTGCCATATAAACATGATAG 58.759 40.000 0.00 0.00 0.00 2.08
24 27 5.376625 AGTACAGGGTGCCATATAAACATG 58.623 41.667 0.00 0.00 0.00 3.21
33 36 0.981183 TCGAAAGTACAGGGTGCCAT 59.019 50.000 0.00 0.00 0.00 4.40
34 37 0.034337 GTCGAAAGTACAGGGTGCCA 59.966 55.000 0.00 0.00 0.00 4.92
35 38 1.012486 CGTCGAAAGTACAGGGTGCC 61.012 60.000 0.00 0.00 0.00 5.01
37 40 0.319211 TGCGTCGAAAGTACAGGGTG 60.319 55.000 0.00 0.00 0.00 4.61
38 41 0.319297 GTGCGTCGAAAGTACAGGGT 60.319 55.000 0.00 0.00 0.00 4.34
39 42 0.319211 TGTGCGTCGAAAGTACAGGG 60.319 55.000 8.55 0.00 0.00 4.45
41 44 2.222289 CGATTGTGCGTCGAAAGTACAG 60.222 50.000 11.53 0.43 41.40 2.74
94 98 2.628178 TGTGACTGGTGTACCAAGAGAG 59.372 50.000 5.12 0.00 46.97 3.20
101 105 1.411246 TCTGTGTGTGACTGGTGTACC 59.589 52.381 0.00 0.00 0.00 3.34
107 111 2.531522 TGTCATCTGTGTGTGACTGG 57.468 50.000 6.99 0.00 43.87 4.00
111 115 3.392882 GTGTGATGTCATCTGTGTGTGA 58.607 45.455 13.90 0.00 0.00 3.58
112 116 2.156310 CGTGTGATGTCATCTGTGTGTG 59.844 50.000 13.90 0.00 0.00 3.82
113 117 2.407090 CGTGTGATGTCATCTGTGTGT 58.593 47.619 13.90 0.00 0.00 3.72
133 137 2.613133 TGGTTTGTGTTAACGGTGTAGC 59.387 45.455 0.26 0.00 0.00 3.58
137 141 3.489180 TTGTGGTTTGTGTTAACGGTG 57.511 42.857 0.26 0.00 0.00 4.94
206 222 4.010349 AGATTTGGGAAGGTTTTAGAGCG 58.990 43.478 0.00 0.00 0.00 5.03
208 224 6.249192 AGGAAGATTTGGGAAGGTTTTAGAG 58.751 40.000 0.00 0.00 0.00 2.43
260 276 2.820059 TTGTCGAGTGATGACTGCTT 57.180 45.000 0.00 0.00 37.26 3.91
262 278 1.127582 GCTTTGTCGAGTGATGACTGC 59.872 52.381 0.00 0.00 37.26 4.40
265 307 1.728971 CCTGCTTTGTCGAGTGATGAC 59.271 52.381 0.00 0.00 36.88 3.06
406 463 2.058593 AGGGCGGAGATTTGGATTTC 57.941 50.000 0.00 0.00 0.00 2.17
1038 1495 2.251642 GGCACGGAAAACACGCTCT 61.252 57.895 0.00 0.00 34.00 4.09
1066 1523 2.094390 CACCAAATCCCTGCTTCACATG 60.094 50.000 0.00 0.00 0.00 3.21
1088 1545 1.873591 AGGCAAAACACGTCAGATCAC 59.126 47.619 0.00 0.00 0.00 3.06
1268 1725 4.347292 GGGGTAAACAGAGGGGTTAGATAG 59.653 50.000 0.00 0.00 0.00 2.08
1270 1727 3.120898 GGGGTAAACAGAGGGGTTAGAT 58.879 50.000 0.00 0.00 0.00 1.98
1286 1743 0.906775 GAAACCACAGATCGGGGGTA 59.093 55.000 20.78 0.00 32.21 3.69
1287 1744 1.683441 GAAACCACAGATCGGGGGT 59.317 57.895 14.72 14.72 34.43 4.95
1288 1745 1.077716 GGAAACCACAGATCGGGGG 60.078 63.158 13.16 13.16 0.00 5.40
1289 1746 4.637771 GGAAACCACAGATCGGGG 57.362 61.111 4.55 4.55 0.00 5.73
1301 1758 1.536284 CCGTAGATCAGCTCGGGAAAC 60.536 57.143 1.46 0.00 39.41 2.78
1304 1761 2.194212 GCCGTAGATCAGCTCGGGA 61.194 63.158 10.84 0.00 42.71 5.14
1305 1762 2.336809 GCCGTAGATCAGCTCGGG 59.663 66.667 10.84 0.00 42.71 5.14
1306 1763 2.050895 CGCCGTAGATCAGCTCGG 60.051 66.667 4.98 4.98 44.86 4.63
1338 1795 1.604604 GACTGGATCGAGGGAGAGAG 58.395 60.000 9.72 0.00 0.00 3.20
1339 1796 3.811031 GACTGGATCGAGGGAGAGA 57.189 57.895 9.72 0.00 0.00 3.10
1424 1883 2.959484 CGGCTGCCTCTTCTTGGGA 61.959 63.158 17.92 0.00 0.00 4.37
1521 2007 0.507358 GTTGTCGTCGTCTTCTTGGC 59.493 55.000 0.00 0.00 0.00 4.52
1531 2017 1.002250 CCTCTTGGTCGTTGTCGTCG 61.002 60.000 0.00 0.00 38.33 5.12
1538 2024 4.016706 CGCCCCCTCTTGGTCGTT 62.017 66.667 0.00 0.00 0.00 3.85
1675 2161 3.436001 GCATGCTTGCTTGATTGCT 57.564 47.368 16.80 0.00 45.77 3.91
1743 2376 5.411669 ACAACTAATCAGCCGGAAAAACTAG 59.588 40.000 5.05 0.13 0.00 2.57
1766 2399 7.902917 TCATCGTTCATTCATTCGTTATTCAAC 59.097 33.333 0.00 0.00 0.00 3.18
1769 2402 8.275632 TCATCATCGTTCATTCATTCGTTATTC 58.724 33.333 0.00 0.00 0.00 1.75
1775 2408 4.844522 GCATCATCATCGTTCATTCATTCG 59.155 41.667 0.00 0.00 0.00 3.34
1838 2471 3.740115 AGAAGAAAGAACAAAGCCGCTA 58.260 40.909 0.00 0.00 0.00 4.26
1935 2578 4.082081 AGCTCTCTCAATTCTCACACTGAG 60.082 45.833 0.00 0.00 45.59 3.35
1936 2579 3.831333 AGCTCTCTCAATTCTCACACTGA 59.169 43.478 0.00 0.00 0.00 3.41
1943 2586 8.659925 TCATTCATAAAGCTCTCTCAATTCTC 57.340 34.615 0.00 0.00 0.00 2.87
1996 2734 0.108662 GAAAAAGGGGGAGCATTGCG 60.109 55.000 2.38 0.00 0.00 4.85
2001 2739 0.178964 CAGGTGAAAAAGGGGGAGCA 60.179 55.000 0.00 0.00 0.00 4.26
2002 2740 0.112412 TCAGGTGAAAAAGGGGGAGC 59.888 55.000 0.00 0.00 0.00 4.70
2003 2741 2.675658 TTCAGGTGAAAAAGGGGGAG 57.324 50.000 0.00 0.00 0.00 4.30
2004 2742 3.142028 AGATTTCAGGTGAAAAAGGGGGA 59.858 43.478 9.13 0.00 45.81 4.81
2005 2743 3.510459 AGATTTCAGGTGAAAAAGGGGG 58.490 45.455 9.13 0.00 45.81 5.40
2006 2744 5.360999 GGATAGATTTCAGGTGAAAAAGGGG 59.639 44.000 9.13 0.00 45.81 4.79
2007 2745 5.360999 GGGATAGATTTCAGGTGAAAAAGGG 59.639 44.000 9.13 0.00 45.81 3.95
2008 2746 5.951747 TGGGATAGATTTCAGGTGAAAAAGG 59.048 40.000 9.13 0.00 45.81 3.11
2009 2747 6.405176 GCTGGGATAGATTTCAGGTGAAAAAG 60.405 42.308 9.13 0.43 45.81 2.27
2010 2748 5.418840 GCTGGGATAGATTTCAGGTGAAAAA 59.581 40.000 9.13 0.00 45.81 1.94
2011 2749 4.949856 GCTGGGATAGATTTCAGGTGAAAA 59.050 41.667 9.13 0.00 45.81 2.29
2012 2750 4.228210 AGCTGGGATAGATTTCAGGTGAAA 59.772 41.667 7.58 7.58 46.60 2.69
2013 2751 3.782523 AGCTGGGATAGATTTCAGGTGAA 59.217 43.478 0.00 0.00 36.72 3.18
2014 2752 3.387962 AGCTGGGATAGATTTCAGGTGA 58.612 45.455 0.00 0.00 36.72 4.02
2015 2753 3.474600 CAGCTGGGATAGATTTCAGGTG 58.525 50.000 5.57 6.92 45.11 4.00
2016 2754 3.387962 TCAGCTGGGATAGATTTCAGGT 58.612 45.455 15.13 0.00 38.31 4.00
2017 2755 4.286549 AGATCAGCTGGGATAGATTTCAGG 59.713 45.833 15.13 0.00 0.00 3.86
2018 2756 5.011840 TCAGATCAGCTGGGATAGATTTCAG 59.988 44.000 15.13 0.00 44.98 3.02
2019 2757 4.903649 TCAGATCAGCTGGGATAGATTTCA 59.096 41.667 15.13 0.00 44.98 2.69
2020 2758 5.480642 TCAGATCAGCTGGGATAGATTTC 57.519 43.478 15.13 0.00 44.98 2.17
2021 2759 5.310068 ACATCAGATCAGCTGGGATAGATTT 59.690 40.000 15.13 2.33 44.98 2.17
2022 2760 4.845225 ACATCAGATCAGCTGGGATAGATT 59.155 41.667 15.13 1.27 44.98 2.40
2023 2761 4.427637 ACATCAGATCAGCTGGGATAGAT 58.572 43.478 15.13 8.62 44.98 1.98
2024 2762 3.854437 ACATCAGATCAGCTGGGATAGA 58.146 45.455 15.13 6.57 44.98 1.98
2025 2763 4.040095 TCAACATCAGATCAGCTGGGATAG 59.960 45.833 15.13 9.26 44.98 2.08
2026 2764 3.969312 TCAACATCAGATCAGCTGGGATA 59.031 43.478 15.13 0.00 44.98 2.59
2027 2765 2.775960 TCAACATCAGATCAGCTGGGAT 59.224 45.455 15.13 9.32 44.98 3.85
2028 2766 2.190538 TCAACATCAGATCAGCTGGGA 58.809 47.619 15.13 7.29 44.98 4.37
2029 2767 2.704464 TCAACATCAGATCAGCTGGG 57.296 50.000 15.13 1.48 44.98 4.45
2030 2768 4.074627 AGATCAACATCAGATCAGCTGG 57.925 45.455 15.13 0.00 44.98 4.85
2031 2769 5.116882 TCAAGATCAACATCAGATCAGCTG 58.883 41.667 7.63 7.63 43.35 4.24
2032 2770 5.354842 TCAAGATCAACATCAGATCAGCT 57.645 39.130 6.03 0.00 43.35 4.24
2033 2771 5.527951 ACATCAAGATCAACATCAGATCAGC 59.472 40.000 6.03 0.00 43.35 4.26
2034 2772 6.017852 CCACATCAAGATCAACATCAGATCAG 60.018 42.308 6.03 0.00 43.35 2.90
2035 2773 5.820947 CCACATCAAGATCAACATCAGATCA 59.179 40.000 6.03 0.00 43.35 2.92
2036 2774 5.821470 ACCACATCAAGATCAACATCAGATC 59.179 40.000 0.00 0.00 41.68 2.75
2037 2775 5.589050 CACCACATCAAGATCAACATCAGAT 59.411 40.000 0.00 0.00 30.30 2.90
2038 2776 4.939439 CACCACATCAAGATCAACATCAGA 59.061 41.667 0.00 0.00 0.00 3.27
2039 2777 4.939439 TCACCACATCAAGATCAACATCAG 59.061 41.667 0.00 0.00 0.00 2.90
2040 2778 4.909001 TCACCACATCAAGATCAACATCA 58.091 39.130 0.00 0.00 0.00 3.07
2041 2779 4.940046 ACTCACCACATCAAGATCAACATC 59.060 41.667 0.00 0.00 0.00 3.06
2042 2780 4.914983 ACTCACCACATCAAGATCAACAT 58.085 39.130 0.00 0.00 0.00 2.71
2043 2781 4.040829 AGACTCACCACATCAAGATCAACA 59.959 41.667 0.00 0.00 0.00 3.33
2044 2782 4.573900 AGACTCACCACATCAAGATCAAC 58.426 43.478 0.00 0.00 0.00 3.18
2045 2783 4.897509 AGACTCACCACATCAAGATCAA 57.102 40.909 0.00 0.00 0.00 2.57
2046 2784 4.897509 AAGACTCACCACATCAAGATCA 57.102 40.909 0.00 0.00 0.00 2.92
2047 2785 4.142730 GCAAAGACTCACCACATCAAGATC 60.143 45.833 0.00 0.00 0.00 2.75
2048 2786 3.755378 GCAAAGACTCACCACATCAAGAT 59.245 43.478 0.00 0.00 0.00 2.40
2049 2787 3.141398 GCAAAGACTCACCACATCAAGA 58.859 45.455 0.00 0.00 0.00 3.02
2050 2788 2.096069 CGCAAAGACTCACCACATCAAG 60.096 50.000 0.00 0.00 0.00 3.02
2051 2789 1.872952 CGCAAAGACTCACCACATCAA 59.127 47.619 0.00 0.00 0.00 2.57
2052 2790 1.511850 CGCAAAGACTCACCACATCA 58.488 50.000 0.00 0.00 0.00 3.07
2053 2791 0.798776 CCGCAAAGACTCACCACATC 59.201 55.000 0.00 0.00 0.00 3.06
2054 2792 1.237285 GCCGCAAAGACTCACCACAT 61.237 55.000 0.00 0.00 0.00 3.21
2055 2793 1.891919 GCCGCAAAGACTCACCACA 60.892 57.895 0.00 0.00 0.00 4.17
2056 2794 1.569479 GAGCCGCAAAGACTCACCAC 61.569 60.000 0.00 0.00 0.00 4.16
2057 2795 1.301716 GAGCCGCAAAGACTCACCA 60.302 57.895 0.00 0.00 0.00 4.17
2058 2796 2.035442 GGAGCCGCAAAGACTCACC 61.035 63.158 0.00 0.00 31.88 4.02
2059 2797 1.294659 CTGGAGCCGCAAAGACTCAC 61.295 60.000 0.00 0.00 31.88 3.51
2060 2798 1.004560 CTGGAGCCGCAAAGACTCA 60.005 57.895 0.00 0.00 31.88 3.41
2061 2799 0.107945 ATCTGGAGCCGCAAAGACTC 60.108 55.000 0.00 0.00 0.00 3.36
2062 2800 0.107945 GATCTGGAGCCGCAAAGACT 60.108 55.000 0.00 0.00 0.00 3.24
2063 2801 0.107945 AGATCTGGAGCCGCAAAGAC 60.108 55.000 0.00 0.00 0.00 3.01
2064 2802 0.107993 CAGATCTGGAGCCGCAAAGA 60.108 55.000 15.38 0.00 0.00 2.52
2065 2803 0.392193 ACAGATCTGGAGCCGCAAAG 60.392 55.000 26.08 0.00 34.19 2.77
2066 2804 0.674581 CACAGATCTGGAGCCGCAAA 60.675 55.000 26.08 0.00 34.19 3.68
2067 2805 1.078918 CACAGATCTGGAGCCGCAA 60.079 57.895 26.08 0.00 34.19 4.85
2068 2806 2.580815 CACAGATCTGGAGCCGCA 59.419 61.111 26.08 0.00 34.19 5.69
2069 2807 2.894387 GCACAGATCTGGAGCCGC 60.894 66.667 26.08 15.64 34.19 6.53
2070 2808 1.078918 TTGCACAGATCTGGAGCCG 60.079 57.895 28.52 14.04 35.71 5.52
2071 2809 1.375098 GCTTGCACAGATCTGGAGCC 61.375 60.000 28.52 16.13 35.71 4.70
2072 2810 0.675837 TGCTTGCACAGATCTGGAGC 60.676 55.000 26.08 26.25 36.63 4.70
2073 2811 1.085091 GTGCTTGCACAGATCTGGAG 58.915 55.000 26.08 18.42 34.19 3.86
2074 2812 0.397564 TGTGCTTGCACAGATCTGGA 59.602 50.000 26.08 7.42 34.19 3.86
2075 2813 0.520404 GTGTGCTTGCACAGATCTGG 59.480 55.000 26.04 15.76 39.07 3.86
2076 2814 1.463831 GAGTGTGCTTGCACAGATCTG 59.536 52.381 26.04 21.37 41.52 2.90
2077 2815 1.347050 AGAGTGTGCTTGCACAGATCT 59.653 47.619 26.04 25.55 41.52 2.75
2078 2816 1.731160 GAGAGTGTGCTTGCACAGATC 59.269 52.381 26.04 24.09 41.52 2.75
2079 2817 1.347050 AGAGAGTGTGCTTGCACAGAT 59.653 47.619 26.04 18.33 41.52 2.90
2080 2818 0.755079 AGAGAGTGTGCTTGCACAGA 59.245 50.000 26.04 5.23 41.52 3.41
2081 2819 1.590932 AAGAGAGTGTGCTTGCACAG 58.409 50.000 26.04 0.00 41.52 3.66
2082 2820 2.042686 AAAGAGAGTGTGCTTGCACA 57.957 45.000 22.47 22.47 41.52 4.57
2083 2821 2.287248 GGAAAAGAGAGTGTGCTTGCAC 60.287 50.000 17.73 17.73 39.51 4.57
2084 2822 1.949525 GGAAAAGAGAGTGTGCTTGCA 59.050 47.619 0.00 0.00 0.00 4.08
2085 2823 1.949525 TGGAAAAGAGAGTGTGCTTGC 59.050 47.619 0.00 0.00 0.00 4.01
2086 2824 2.291741 GGTGGAAAAGAGAGTGTGCTTG 59.708 50.000 0.00 0.00 0.00 4.01
2087 2825 2.173569 AGGTGGAAAAGAGAGTGTGCTT 59.826 45.455 0.00 0.00 0.00 3.91
2088 2826 1.771255 AGGTGGAAAAGAGAGTGTGCT 59.229 47.619 0.00 0.00 0.00 4.40
2089 2827 1.876156 CAGGTGGAAAAGAGAGTGTGC 59.124 52.381 0.00 0.00 0.00 4.57
2090 2828 3.475566 TCAGGTGGAAAAGAGAGTGTG 57.524 47.619 0.00 0.00 0.00 3.82
2091 2829 4.455606 CTTTCAGGTGGAAAAGAGAGTGT 58.544 43.478 0.00 0.00 44.52 3.55
2103 2841 2.282462 AAGCCCGCTTTCAGGTGG 60.282 61.111 0.00 0.00 36.69 4.61
2124 2862 2.725312 GCACAGATCTGGAGCCGGA 61.725 63.158 26.08 0.00 35.60 5.14
2127 2865 1.375098 GCTTGCACAGATCTGGAGCC 61.375 60.000 28.52 16.13 35.71 4.70
2197 3056 0.538057 TGGACTGCCTGCTTTTCCAG 60.538 55.000 3.70 0.00 32.45 3.86
2208 3067 0.251341 AAAGACCACCATGGACTGCC 60.251 55.000 21.47 3.27 41.50 4.85
2256 3176 2.142761 TGTCAGTGAGTGGGCTGCT 61.143 57.895 0.00 0.00 33.09 4.24
2257 3177 1.963338 GTGTCAGTGAGTGGGCTGC 60.963 63.158 0.00 0.00 33.09 5.25
2264 3184 2.158445 ACTCCTACCAGTGTCAGTGAGT 60.158 50.000 9.36 7.90 0.00 3.41
2321 3250 4.141321 ACACATCGGGATACTACTCCAGTA 60.141 45.833 0.00 0.00 43.89 2.74
2322 3251 3.223435 CACATCGGGATACTACTCCAGT 58.777 50.000 0.00 0.00 41.62 4.00
2323 3252 3.004839 CACACATCGGGATACTACTCCAG 59.995 52.174 0.00 0.00 37.01 3.86
2324 3253 2.956333 CACACATCGGGATACTACTCCA 59.044 50.000 0.00 0.00 37.01 3.86
2325 3254 3.004524 GTCACACATCGGGATACTACTCC 59.995 52.174 0.00 0.00 34.31 3.85
2326 3255 3.004524 GGTCACACATCGGGATACTACTC 59.995 52.174 0.00 0.00 0.00 2.59
2366 3303 2.361610 CATGCCGCCTTTCACCCT 60.362 61.111 0.00 0.00 0.00 4.34
2391 3328 1.305549 CCCTCCCCAGCAAGCAAAT 60.306 57.895 0.00 0.00 0.00 2.32
2392 3329 2.118076 CCCTCCCCAGCAAGCAAA 59.882 61.111 0.00 0.00 0.00 3.68
2393 3330 3.185203 ACCCTCCCCAGCAAGCAA 61.185 61.111 0.00 0.00 0.00 3.91
2394 3331 3.970410 CACCCTCCCCAGCAAGCA 61.970 66.667 0.00 0.00 0.00 3.91
2413 3350 2.271497 GGTGCTCATGCTCTGCCT 59.729 61.111 0.00 0.00 40.48 4.75
2414 3351 2.827642 GGGTGCTCATGCTCTGCC 60.828 66.667 0.00 0.00 40.48 4.85
2419 3356 2.311070 TGGATGGGGTGCTCATGCT 61.311 57.895 0.00 0.00 40.48 3.79
2423 3360 2.605607 CCTGTGGATGGGGTGCTCA 61.606 63.158 0.00 0.00 0.00 4.26
2443 3380 2.537560 CGCAGCAATCACGGGATCC 61.538 63.158 0.00 1.92 31.88 3.36
2444 3381 1.815421 ACGCAGCAATCACGGGATC 60.815 57.895 0.00 0.00 31.88 3.36
2487 3428 4.119363 ATGGGCACGCATCTGGCT 62.119 61.111 0.00 0.00 41.67 4.75
2488 3429 3.896133 CATGGGCACGCATCTGGC 61.896 66.667 0.00 0.00 39.90 4.85
2496 3437 2.100797 CATCGCAACATGGGCACG 59.899 61.111 11.48 3.35 0.00 5.34
2502 3443 6.499234 TTATTATCCATCCATCGCAACATG 57.501 37.500 0.00 0.00 0.00 3.21
2524 3490 3.650950 AGGCAGGCCGGTCACATT 61.651 61.111 9.71 0.00 41.95 2.71
2548 3514 4.910585 GATACCCACGGGCCGCAG 62.911 72.222 28.71 19.22 39.32 5.18
2552 3518 1.153229 GACAAGATACCCACGGGCC 60.153 63.158 0.69 0.00 39.32 5.80
2553 3519 0.180406 ATGACAAGATACCCACGGGC 59.820 55.000 0.69 0.00 39.32 6.13
2554 3520 1.202651 GGATGACAAGATACCCACGGG 60.203 57.143 0.00 0.00 42.03 5.28
2555 3521 1.762957 AGGATGACAAGATACCCACGG 59.237 52.381 0.00 0.00 0.00 4.94
2556 3522 2.483714 CCAGGATGACAAGATACCCACG 60.484 54.545 0.00 0.00 39.69 4.94
2570 3536 0.896940 ACAAACCAGCAGCCAGGATG 60.897 55.000 0.00 0.00 0.00 3.51
2578 3544 2.192624 CAAAACGGAACAAACCAGCAG 58.807 47.619 0.00 0.00 0.00 4.24
2581 3547 3.991121 ACAAACAAAACGGAACAAACCAG 59.009 39.130 0.00 0.00 0.00 4.00
2607 3573 5.961272 ACAAAACAAAAGGACGAGAACAAT 58.039 33.333 0.00 0.00 0.00 2.71
2609 3575 5.379732 AACAAAACAAAAGGACGAGAACA 57.620 34.783 0.00 0.00 0.00 3.18
2610 3576 6.144886 ACAAAACAAAACAAAAGGACGAGAAC 59.855 34.615 0.00 0.00 0.00 3.01
2612 3578 5.774630 ACAAAACAAAACAAAAGGACGAGA 58.225 33.333 0.00 0.00 0.00 4.04
2614 3580 7.115095 CACTAACAAAACAAAACAAAAGGACGA 59.885 33.333 0.00 0.00 0.00 4.20
2615 3581 7.224024 CACTAACAAAACAAAACAAAAGGACG 58.776 34.615 0.00 0.00 0.00 4.79
2616 3582 7.171848 ACCACTAACAAAACAAAACAAAAGGAC 59.828 33.333 0.00 0.00 0.00 3.85
2617 3583 7.171678 CACCACTAACAAAACAAAACAAAAGGA 59.828 33.333 0.00 0.00 0.00 3.36
2619 3585 6.794636 GCACCACTAACAAAACAAAACAAAAG 59.205 34.615 0.00 0.00 0.00 2.27
2620 3586 6.483640 AGCACCACTAACAAAACAAAACAAAA 59.516 30.769 0.00 0.00 0.00 2.44
2621 3587 5.992217 AGCACCACTAACAAAACAAAACAAA 59.008 32.000 0.00 0.00 0.00 2.83
2622 3588 5.542779 AGCACCACTAACAAAACAAAACAA 58.457 33.333 0.00 0.00 0.00 2.83
2623 3589 5.047660 AGAGCACCACTAACAAAACAAAACA 60.048 36.000 0.00 0.00 0.00 2.83
2624 3590 5.288472 CAGAGCACCACTAACAAAACAAAAC 59.712 40.000 0.00 0.00 0.00 2.43
2625 3591 5.406649 CAGAGCACCACTAACAAAACAAAA 58.593 37.500 0.00 0.00 0.00 2.44
2626 3592 4.676723 GCAGAGCACCACTAACAAAACAAA 60.677 41.667 0.00 0.00 0.00 2.83
2627 3593 3.181491 GCAGAGCACCACTAACAAAACAA 60.181 43.478 0.00 0.00 0.00 2.83
2628 3594 2.357637 GCAGAGCACCACTAACAAAACA 59.642 45.455 0.00 0.00 0.00 2.83
2629 3595 2.618709 AGCAGAGCACCACTAACAAAAC 59.381 45.455 0.00 0.00 0.00 2.43
2630 3596 2.878406 GAGCAGAGCACCACTAACAAAA 59.122 45.455 0.00 0.00 0.00 2.44
2631 3597 2.104792 AGAGCAGAGCACCACTAACAAA 59.895 45.455 0.00 0.00 0.00 2.83
2632 3598 1.694150 AGAGCAGAGCACCACTAACAA 59.306 47.619 0.00 0.00 0.00 2.83
2633 3599 1.273606 GAGAGCAGAGCACCACTAACA 59.726 52.381 0.00 0.00 0.00 2.41
2634 3600 1.404851 GGAGAGCAGAGCACCACTAAC 60.405 57.143 0.00 0.00 0.00 2.34
2635 3601 0.898320 GGAGAGCAGAGCACCACTAA 59.102 55.000 0.00 0.00 0.00 2.24
2636 3602 0.040351 AGGAGAGCAGAGCACCACTA 59.960 55.000 0.00 0.00 0.00 2.74
2637 3603 0.835543 AAGGAGAGCAGAGCACCACT 60.836 55.000 0.00 0.00 0.00 4.00
2638 3604 0.390998 GAAGGAGAGCAGAGCACCAC 60.391 60.000 0.00 0.00 0.00 4.16
2639 3605 1.548357 GGAAGGAGAGCAGAGCACCA 61.548 60.000 0.00 0.00 0.00 4.17
2640 3606 1.220477 GGAAGGAGAGCAGAGCACC 59.780 63.158 0.00 0.00 0.00 5.01
2641 3607 0.108233 CTGGAAGGAGAGCAGAGCAC 60.108 60.000 0.00 0.00 0.00 4.40
2642 3608 1.897225 GCTGGAAGGAGAGCAGAGCA 61.897 60.000 0.00 0.00 35.15 4.26
2643 3609 1.153389 GCTGGAAGGAGAGCAGAGC 60.153 63.158 0.00 0.00 35.15 4.09
2644 3610 1.521616 GGCTGGAAGGAGAGCAGAG 59.478 63.158 0.00 0.00 36.90 3.35
2645 3611 2.354401 CGGCTGGAAGGAGAGCAGA 61.354 63.158 0.00 0.00 36.90 4.26
2646 3612 2.186384 CGGCTGGAAGGAGAGCAG 59.814 66.667 0.00 0.00 36.90 4.24
2647 3613 2.283894 TCGGCTGGAAGGAGAGCA 60.284 61.111 0.00 0.00 36.90 4.26
2648 3614 2.185608 GTCGGCTGGAAGGAGAGC 59.814 66.667 0.00 0.00 34.23 4.09
2649 3615 2.492090 CGTCGGCTGGAAGGAGAG 59.508 66.667 0.00 0.00 0.00 3.20
2650 3616 3.068691 CCGTCGGCTGGAAGGAGA 61.069 66.667 0.00 0.00 46.09 3.71
2651 3617 4.821589 GCCGTCGGCTGGAAGGAG 62.822 72.222 28.98 0.00 46.09 3.69
2669 3635 3.389727 AAACCACACGCACGCACAC 62.390 57.895 0.00 0.00 0.00 3.82
2670 3636 3.128188 AAACCACACGCACGCACA 61.128 55.556 0.00 0.00 0.00 4.57
2671 3637 2.650602 CAAACCACACGCACGCAC 60.651 61.111 0.00 0.00 0.00 5.34
2672 3638 3.882013 CCAAACCACACGCACGCA 61.882 61.111 0.00 0.00 0.00 5.24
2673 3639 4.622456 CCCAAACCACACGCACGC 62.622 66.667 0.00 0.00 0.00 5.34
2674 3640 4.622456 GCCCAAACCACACGCACG 62.622 66.667 0.00 0.00 0.00 5.34
2675 3641 4.622456 CGCCCAAACCACACGCAC 62.622 66.667 0.00 0.00 0.00 5.34
2676 3642 3.752088 TACGCCCAAACCACACGCA 62.752 57.895 0.00 0.00 0.00 5.24
2677 3643 2.329614 ATACGCCCAAACCACACGC 61.330 57.895 0.00 0.00 0.00 5.34
2678 3644 0.951525 TCATACGCCCAAACCACACG 60.952 55.000 0.00 0.00 0.00 4.49
2679 3645 1.459450 ATCATACGCCCAAACCACAC 58.541 50.000 0.00 0.00 0.00 3.82
2680 3646 3.118223 TCATATCATACGCCCAAACCACA 60.118 43.478 0.00 0.00 0.00 4.17
2681 3647 3.472652 TCATATCATACGCCCAAACCAC 58.527 45.455 0.00 0.00 0.00 4.16
2682 3648 3.847671 TCATATCATACGCCCAAACCA 57.152 42.857 0.00 0.00 0.00 3.67
2683 3649 6.112734 TCATATCATATCATACGCCCAAACC 58.887 40.000 0.00 0.00 0.00 3.27
2684 3650 7.280876 ACATCATATCATATCATACGCCCAAAC 59.719 37.037 0.00 0.00 0.00 2.93
2685 3651 7.280652 CACATCATATCATATCATACGCCCAAA 59.719 37.037 0.00 0.00 0.00 3.28
2686 3652 6.762661 CACATCATATCATATCATACGCCCAA 59.237 38.462 0.00 0.00 0.00 4.12
2687 3653 6.282930 CACATCATATCATATCATACGCCCA 58.717 40.000 0.00 0.00 0.00 5.36
2688 3654 5.698089 CCACATCATATCATATCATACGCCC 59.302 44.000 0.00 0.00 0.00 6.13
2689 3655 6.201615 CACCACATCATATCATATCATACGCC 59.798 42.308 0.00 0.00 0.00 5.68
2690 3656 6.758416 ACACCACATCATATCATATCATACGC 59.242 38.462 0.00 0.00 0.00 4.42
2691 3657 9.237846 GTACACCACATCATATCATATCATACG 57.762 37.037 0.00 0.00 0.00 3.06
2694 3660 8.262933 CCAGTACACCACATCATATCATATCAT 58.737 37.037 0.00 0.00 0.00 2.45
2695 3661 7.235399 ACCAGTACACCACATCATATCATATCA 59.765 37.037 0.00 0.00 0.00 2.15
2696 3662 7.615403 ACCAGTACACCACATCATATCATATC 58.385 38.462 0.00 0.00 0.00 1.63
2697 3663 7.455953 AGACCAGTACACCACATCATATCATAT 59.544 37.037 0.00 0.00 0.00 1.78
2698 3664 6.782494 AGACCAGTACACCACATCATATCATA 59.218 38.462 0.00 0.00 0.00 2.15
2699 3665 5.604231 AGACCAGTACACCACATCATATCAT 59.396 40.000 0.00 0.00 0.00 2.45
2700 3666 4.962362 AGACCAGTACACCACATCATATCA 59.038 41.667 0.00 0.00 0.00 2.15
2701 3667 5.292765 CAGACCAGTACACCACATCATATC 58.707 45.833 0.00 0.00 0.00 1.63
2702 3668 4.101585 CCAGACCAGTACACCACATCATAT 59.898 45.833 0.00 0.00 0.00 1.78
2703 3669 3.450817 CCAGACCAGTACACCACATCATA 59.549 47.826 0.00 0.00 0.00 2.15
2704 3670 2.237143 CCAGACCAGTACACCACATCAT 59.763 50.000 0.00 0.00 0.00 2.45
2705 3671 1.623311 CCAGACCAGTACACCACATCA 59.377 52.381 0.00 0.00 0.00 3.07
2706 3672 1.623811 ACCAGACCAGTACACCACATC 59.376 52.381 0.00 0.00 0.00 3.06
2707 3673 1.347707 CACCAGACCAGTACACCACAT 59.652 52.381 0.00 0.00 0.00 3.21
2708 3674 0.756294 CACCAGACCAGTACACCACA 59.244 55.000 0.00 0.00 0.00 4.17
2709 3675 1.045407 TCACCAGACCAGTACACCAC 58.955 55.000 0.00 0.00 0.00 4.16
2710 3676 1.623311 CATCACCAGACCAGTACACCA 59.377 52.381 0.00 0.00 0.00 4.17
2711 3677 1.066143 CCATCACCAGACCAGTACACC 60.066 57.143 0.00 0.00 0.00 4.16
2712 3678 1.899814 TCCATCACCAGACCAGTACAC 59.100 52.381 0.00 0.00 0.00 2.90
2713 3679 2.319025 TCCATCACCAGACCAGTACA 57.681 50.000 0.00 0.00 0.00 2.90
2714 3680 2.223829 CGATCCATCACCAGACCAGTAC 60.224 54.545 0.00 0.00 0.00 2.73
2715 3681 2.031870 CGATCCATCACCAGACCAGTA 58.968 52.381 0.00 0.00 0.00 2.74
2716 3682 0.826715 CGATCCATCACCAGACCAGT 59.173 55.000 0.00 0.00 0.00 4.00
2717 3683 0.105593 CCGATCCATCACCAGACCAG 59.894 60.000 0.00 0.00 0.00 4.00
2718 3684 0.325203 TCCGATCCATCACCAGACCA 60.325 55.000 0.00 0.00 0.00 4.02
2719 3685 0.105039 GTCCGATCCATCACCAGACC 59.895 60.000 0.00 0.00 0.00 3.85
2720 3686 0.249073 CGTCCGATCCATCACCAGAC 60.249 60.000 0.00 0.00 0.00 3.51
2721 3687 1.391933 CCGTCCGATCCATCACCAGA 61.392 60.000 0.00 0.00 0.00 3.86
2722 3688 1.068083 CCGTCCGATCCATCACCAG 59.932 63.158 0.00 0.00 0.00 4.00
2723 3689 3.088941 GCCGTCCGATCCATCACCA 62.089 63.158 0.00 0.00 0.00 4.17
2724 3690 2.280186 GCCGTCCGATCCATCACC 60.280 66.667 0.00 0.00 0.00 4.02
2725 3691 2.280186 GGCCGTCCGATCCATCAC 60.280 66.667 0.00 0.00 0.00 3.06
2740 3706 2.126189 AAAGTAGGACGACGCGGC 60.126 61.111 12.47 6.41 0.00 6.53
2741 3707 2.442188 GCAAAGTAGGACGACGCGG 61.442 63.158 12.47 0.00 0.00 6.46
2742 3708 2.774951 CGCAAAGTAGGACGACGCG 61.775 63.158 3.53 3.53 34.89 6.01
2743 3709 0.454957 TACGCAAAGTAGGACGACGC 60.455 55.000 0.00 0.00 0.00 5.19
2744 3710 2.184385 ATACGCAAAGTAGGACGACG 57.816 50.000 0.00 0.00 38.94 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.