>input_sequence_69514
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----------------ATGAGCTCCTCGGTCGAGAAGGTGAGCTGATCCGATCCAGAGCGTGTTTTCCGTGCCCGATCTG
TACATGTGAAGCAGGGATTTGGTGGTGATCTGACGTGTTTTGCCTCGATCTGTTGGCAGGGGAGCGGATCGCTGGATCCC
GGCGAGCGCCCGGCCGCCGGCAGCCAGCCCAAGGCATGCACCGCCTGCAACACCACCAAGACGCCGCTCTGGCGCGGCGG
ACCCTCCGGCCCCATGGTGAGTGCCGCAGATCCCTCCCGATCTGCTATCTAACCCCTCTGTTTACCCCCGATCTGTGGTT
TCCCGAGCTGATCTACGGCGGCTGATCTGTTTTTCTC--TCTCCCTCGATCCAGTCGCTGTGCAACGCGTGCGGGATCCG
GTACAGGAAGAAGCGGAGGGAGGCGATGGGCCTCGAGGACCCTCCCAAGAAGAGGCAGCCGGCGGCCGCCGCCGCGCCC-
-----GCGG------------CGTGCTCGGAGGCCGGCGGCGAGAGCGCGGATCCGGAGCA---GCAGCAGCC------G
CAGCAGGCCAAGAAGACGACGACAACGACCAAGAGGGGGCGCGAGGTGGAGCTCCGCGTGGTGGGGTTCGGCAAGGAGGT
GGTGCTGAAGCAGCGGCGGCGGATGCGGCGCAGGCAGCGGCTGGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCC
AGCAAT--------------------------------------------------------------------------
-------------------------------------------------------------------------CAAGCAA
GCATGCAGGCAGAGATGTTGCGGCGTCTCTGCCTGCTCCCCCTTGTTCTTTCCTGCTAGTTTTTCCGGCTGATTAG----
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>chr4A_1_TraesCS4A01G364700
CAGGTACCCCAATG--TAACTTCTATCATGTTTATATGGCACCC-TGTACTTTCGACGCACAATCGCAATAAGCCTTGTT
TTTTTTTGAATATTTTACTCTCTTGGTACACCAGTCACACACAGATGACATCACACGCTACACCGTTAACACAAACCAC-
-----------AAAGAAAGAAAGAAGAACACGCTCACGTGCACCACCATCATCCATCCATGCGCTCTAAAACCTTCCCAA
ATCTTCCTAGACGGCCGGCCGGCCGAAAAGCCCCAAAG--------------------------CAGTCATCACTCGACA
AAGCAGGCCGGCGGCGATAC---------ATACATATACGGGCGCCCCCCGAATTCCACCCCCGCCC-C-----CATTTC
CCTCCACCCTTTTCCGTTTCCCTCCACGGCGCGCCCCTCTTCCCTCCCCCATTTTCAGATCCGAAATCCAAATCTCCGCC
CTTTATCTCTCCTCCCCCC---------T---------------------------------------------------
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-------------------------------------------------------------CCGACCCACCACCACCTCA
TCCATTCCCCTCCTCCCTCC--------CTCCCCTCCCCCTTCCCGCCGCCGCCTCCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCTCTGGTGGTTGCCCGTAGGA------------T
CCTCCCGGCAGCAGAGATCTGTGGCGGCGGATCGGGCCG----GGCACCAAACCCCTAAA---------------CCCCC
GATCCGCGACGAGGAGCGGGTGCGGTGGCCGGAGCCGCGGATCGCCGGAGCTGAGAGGGGGCGCCTGTCGCAGATCTGCC
GATCCTGGCGCCGGACATGAGCTCCTCGGTCGAGAAGGTGAGCTGATCCGATCCAGAGCGTGTTTTCCGTGCCCGATCTG
TACATGTGAAGCAGGGATTTGGTGGTGATCTGACGTGTTTTGCCTCGATCTGTTGGCAGGGGAGCGGATCGCTGGATCCC
GGCGAGCGCCCGGCCGCCGGCAGCCAGCCCAAGGCATGCACCGCCTGCAACACCACCAAGACGCCGCTCTGGCGCGGCGG
ACCCTCCGGCCCCATGGTGAGTGCCGCAGATCCCTCCCGATCTGCTATCTAACCCCTCTGTTTACCCCCGATCTGTGGTT
TCCCGAGCTGATCTACGGCGGCTGATCTGTTTTTCTC--TCTCCCTCGATCCAGTCGCTGTGCAACGCGTGCGGGATCCG
GTACAGGAAGAAGCGGAGGGAGGCGATGGGCCTCGAGGACCCTCCCAAGAAGAGGCAGCCGGCGGCCGCCGCCGCGCCC-
-----GCGG------------CGTGCTCGGAGGCCGGCGGCGAGAGCGCGGATCCGGAGCA---GCAGCAGCC------G
CAGCAGGCCAAGAAGACGACGACAACGACCAAGAGGGGGCGCGAGGTGGAGCTCCGCGTGGTGGGGTTCGGCAAGGAGGT
GGTGCTGAAGCAGCGGCGGCGGATGCGGCGCAGGCAGCGGCTGGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCC
AGCAAT--------------------------------------------------------------------------
-------------------------------------------------------------------------CAAGCAA
GCATGCAGGCAGAGATGTTGCGGCGTCTCTGCCTGCTCCCCCTTGTTCTTTCCTGCTAGTTTTTCCGGCTGATTAGTTGT
TGAATAACGAATGAATGAACGATGATGATGCAGCTGCAGCAGCAGCAGCTGCTGTTCTTCGCGCCAGCTTTAGCGGCTTT
GTTCTTTCTTCTTGCCTAGTAGCAGCTGTGATGTTA-CCAAGTAGTAGTAGTAGCGGTTATCCTAGTAGTAGT-------
--GGTAGTGTGTAACATCTCAGTGTGAGAATTGAGAGAGCTTTATGAATGATGAACCATCTTTGTGGCTCCAGATGTG--
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-------------CGCAATGCTCCCCCTTTTTCACCTGAAATCTATCCCAGCTGATCTGATGTTGATCTTGATGTGGTGA
GTCTTTGCGGCTCCAGATCTGTGCAAGCACACTCTCTTTTCCACCTGAAAGCGGGCTTCATTCCGGCTCCAGATCTGTGC
AAGCGCCCGCCTTTTCTTTT------------------------------------------------------------
----------------------------------------------------------CATTCCATTCCGTTCCGGTGAT
G---GTATTTTCCGCCTGGAAAAGCAGGCAGT-----------CCATGGTGGTCTTTCAC--------------------
------------------------------CACTGCGGTGCTGCTGTCACCAGCTAGCAGCCCACT--------CACTGA
CACTGGTAGGAGTGGAGTGGGGTGGAGGAATCCA-ACCCTATCTACTCCTACTGGAGTAGTATCCCGATGTGTGACCTA-
-------GCGGGCCGCGGGGAGAGGGTGAAAGGCGGCATGGAATTTGATTTGCTTGCTGGGGAGGGTGCAGGCAGAGCAT
GAGCACCCCATCCACAGGGGG----ATCCCGTGATTGCTGCGTGCATCTCTTATCTTGTCCGTCCCGAGCCAGATGCGTG
CCC-------------------------ATGTTGCGATGGATGGATAATAATGTGACCGGCCTGCCTGCCTGCCTGCGGC
CCGTGGGTATCTTGTCATCCTGGCTGCTGGTTTGTTCCGTTTTGTTTGTGTTATTGTTCTCGTCCTTTTGTTTTGTTTTG
TTAGTGGTGCTCTGCTCTCCTTCCAGCCGACGGCGTGTGCGTGCGTGTGGTTTGGGCGTATGATATGATATGATGTGGTG
TACTGGTCTGGTGATGGATCGGACGGCCGCGTCGTCCTACTTTGCGTAT
>chr5D_1
CAGATAGCTCAATGTATAATTTTTATTATGTTTATTATGGTGCTATGTACTTTCGACGCACAATCGCAATAAGCCTTGA-
TTTTTTTAAATATTTTATTCTGTTCGTACATCAGG--CACACAGATGACATCACACACTATACCGTTAACACAAACCAC-
-----------AAAGAAAGAAAGAAAAACACGCTCACGTGCACCACCATCATCCATCCATGTGTTGTAAAACCTTCCTAA
ATCCTCCTCCTACA-CGGCCAGCCGAAAAGCCCCAGACCAACCGTAGCGGCTATCACCCCAAAACACTCATCACTCGACA
AAGCACGCCGGCGGCGATAC---------ATAC-------------------ATTCCACCCCCGCCC-CCGTTTCATTTC
CCTCCACCCTTTTCCGTTTCCCTCCACGGCCCCCCCCTCTTCCCTCCCCCATTTTCAGATCCAAAATCCAAATCTCCGCC
CTTTATCTCTCCTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACCCACCACCACCTCA
TCCATTCCCCTCCTCCCTCC--------C---------CCTTCCCGCCGCCGCCTCCTCCTCCTCCAAACCCCTACTCCC
GCCGACCAATCGATCGAGCCAGTGCTCCGC--------------------------------------------------
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------------------------------------------TCTG-----GTGGTTGGCCGTAGTATAGCCCGTGGGTT
CCTCACCGTAGCAGAGATCTGTGGCGGCGGAGCGGATCGGGCCGGCACCAAACCCCTAAACCCACGCCCCCCGATCCCCC
GATCCGCGACGAGGAGCGGGTGCGGTGGCCGGACCCGCGGATCGCCGGAGCTCAGAGGGGGTGCCTGTCGCAGATCTGCC
GATCCTGGCGCCGGACATGAGCTCCTCGGTCGAGAAGGTGAGCCGATCCGATCCGGAGCGTGTTTTCCGTGCCCGATCTG
TAGATGCGAGGCAGGGATTTGGTGTTGATCTGACGTGTTTTGCCTCGGTCTGTTCGCAGGGGAACGGATCGCTGGATCCC
GGCGAGCGCCCGGCCGCCGGCAGCCAGCCCAAGGCCTGCACCGCCTGCAACACCACCAAGACGCCGCTCTGGCGCGGCGG
ACCCTCCGGACCCATGGTGAGTGCCGCAGATCCCTCCCGATCTGTTGTCTAACCCCTTTGTTCTTTCCCGATCTGTGATT
-------------TACGGCGGCTGATCTGTTTTTTATGGTCTCCCTCGATCCAGTCGCTGTGCAACGCGTGTGGGATCCG
GTACAGGAAGAAGCGGAGGGAGGCGATGGGCCTCGAGGACCCCCCCAAGAAGAGGCAGCCGGCGGCCGCCGCGCCTGCGG
CGGCAGCGG------------CGTGCTCGGAGGCCGGCGGCGAGAGCGCGGATCCGGAGCA---GCAGCAGCC------T
CAGCAGCCCAAGAAGAAGACGACGACGACCAAGAGGGGGCGCGAGGTGGAGCTCCGCGTTGTCGGGTTTGGCAAGGAGGT
GGTGCTGAAGCAGCGGCGGCGGATGCGGCGCAGGCCGCGGCTGGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCC
TCTCCTCCGGCGTCATCTACGGCTGATCCAGGCCGGCCCAGCCCCACCTAGCTAGCTAGCAGCAAGCGGAGAGAGGAGAA
GAGAAGAGAAGAGAGATGAGAGGAGATCCAGAGTGTGAGTGATTTGCTCGCT---TGCTGCTTGTCT----AGCAAGCAA
GCATGCAGGCAGAGATGTTGCGGCGTCTCTGCCTGCTCCCCCTTGTTCTTTCCTGGTAGTTTTTCCGGCTGATTAGTTCT
TCAATAATGAATGAATGAACGATGATGCA------GCTGCAGCAGCTGCTGCTGTTCTTCGTGCCAGCTT-AGCGGCTTT
GTTCTTTCTTGTTGCCTAGTAGCAGCTGTGATGTTACCCAAGTAGTAGTAGTAGCGGTTATCCTAGTAGTAGTAT---CA
GTGGTAGTGTGTAACATTGCAGTGTAAGAATTGAGAGAGCTTTATGAATGATGAACCATCTTTGTGGCTCCAGATCTG--
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-------------TGCAAG-------------------------------------------------------------
-----------------------------CACTCTCTTTTTCACCTGAAAGCGGGCTTGATAGCAGCTCCAGATCTGTGC
AAGCACCCGCCTTTTCTTCCCTCGCAGCTGAAATTCATCCCAGGTGATCGATCTGCCATTGATGGATGTTTGATCTGATG
TGATGGTGCACGGGTGGTGTTTCCGCCTGGGATCTGGGGTTGGCGGCCGGATGAGTAGCATTCCATTCCGTTCCGGTGAT
AGTAGTATTTTCCGGGTGGAAAAGCAAGCAGTGAGGTCGCCGTCCATGGTGGTTTCTCGAAAGGGAAAAGTCAGCACCCG
GTCTTTCTTTCACCCTCTGCTGCTCCACTGCACTCCACTGCTGCTGTCACCAGCTTTCAGCCCGCTTGCTCACTCACTGA
CACTGGTAGGAGTGGAGTGGGGTGGAGGAATCCAAACCCTATCTACTGGAGT---AGTAGTATCCCGATGTGTGACCCAG
CGGGCCGGCGGGCCGCGGGGAGGGGGTGAAAGGCGGCATGGAATTTG-----CTTGTTCGGGAGGGTGCCCGCAGTGCA-
GAGCCCCCCATCCACACGGCCGGGAATCCCGTGATTGCTGCGTGCATCTCTTATCTTGTCCGTCCCGGACCAGAGGTGTG
CCGCTGCCTGCCCCTGCCTGACGACTCGATGTTGCGATGGATGGATAATCATGCGACGGGCCTGCCTGGCTGTTGGCT--
--GTGGGTATCTTGTGATCCTGGTTGGTGGTTTGTTCCGTTTTGTTTGTGTTGTGCTCCCGTCC----------------
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>chr5B_12
-----------ATG--TAATTTTTATTATGTTTAT---GGTGCTATGTACTTTCGATGCACAATCGCAATGT--CTTGAT
TTTTTTTGAATATTTTATTCTCTTCGTAG-----------ACAGATGACAT--CACACTATAACGTTAACACAGACCAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAAACACGCTCACGTGCACCATCATCATCCATCCATGTGTTCTAAAACCTTCCCAA
ATCCTCCTAGACGGCCGGCCGGCCGAAAAGCCCCAGCAGACCAACCG--------------------------CTCGACA
AAGCACGCCGGCGGCGTGGCGTGGCGCCGATACATATACGGCCACCCCCCGGATTCCAGCCCCCATCTC-----CATTTC
CCTCCACCCTTTTCCGTTTCCCTCCACGGCGCGCCCCTCTTCCCTCCCC-ATTTTCAGATCCAAAATCCAAATCTCCGCC
CTTTATCTCTCCTCCCCCCTCCCTTCCCT---------------------------------------------------
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-------------------------------------------------------------CCGACCCACCACCACCTCA
TCCATTCCCCTCCTCCCTCCATCCCTCCC---------CCTTCCCGCCGCCGCCAACTCCTCCTCCAAACCCCTGCCGTT
GGCCACCGATCGATCGAGCCAGTGCTCCGC--------------------------------------------------
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------------------------------------------TCTGCTCTGGTGGTTGGCAGTAGGA------------T
CCTCCCGGTAGCAGTGATCTGTGGCGGCGGAGCGGATCG----GGCACCAAACCCCTAAA-------CCCCCGATCCCCC
GATCCGCGACGAGGAGCGGGTGGGGTGGCCGGAGCCGCGGATCGCCGGAGCTCGGAGGGGGTGCCTGTCGCAGATCTGCC
GATCCTGGCGCCCGACATGAGCTCGTCGGTCGAGAAGGTGAGCTGATCCGATCCGGAGCGTGCTTTTGGCGCTCGATCTA
CCGCTCTAAAGTATGGATTTGGTGTTGATCTGACGTGTTTTGCCTCGATCTGTTCGCAGGGGAGCGGATCGCTGGATCCC
GGCGAGCGCCCGGCCGCCGGCAGCCAGCCCAAGGCCTGCACCGCCTGCAACACCACCAAGACGCCGCTCTGGCGCGGCGG
GCCCTCCGGACCCATGGTGAGTGCGGCAGATCCCTCCCGATCTGTTGTCTAACCCCTCTGTTCTTTCCCGATCTGTGATT
CTTCGAGCTGATCTACGGCGGCTGATCTGTTTTTTCTCTCTTGCCTCGATCCAGTCGCTGTGCAACGCGTGCGGGATCCG
GTACAGGAAGAAGCGGAGGGAGGCGATGGGCCTCGAGGACCCCCCCAAGAAGAGGCAGCCGGCGGCGGCCGCCGCGCCT-
-----GCGGCGGCGGCGGTGGCGTGCTCGGAGGCCGGCGGCGAGAGCGCGGATCCGGAGCAGCAGCAGCAGCCGCCGCAG
CAGCAGCCCAAGAAGAAGACGACGACGACCAAGAGGGGTCGCGAGGTGGAGCTCCGCGTGGTGGGGTTCGGCAAGGAGGT
GGTGCTGAAGCAGCGGCGGCGGATGCGGCGCAGGCCGCGGCTGGGCGAGGAGGAGAAGGCGGCCATCCTCCTGATGGCCC
TCTCCTCCGGCGTCATCTACGGCTGATCCAGGCCGACCCAGCCCTACCTAGCTAGC-AGCAGCAAGCGGAGAGAAGAGAA
GA----------GAGATGAGAGGAGATCCAGAGTGTGAGTGATTTGCTCGCTTGCTGCTGCTTGTCTAGCAAGCAAGCAT
GCATGCAGGCAGAGATGTCGAGGCGTCTCTGCC----CCCCCTTGTTCTTTCCTGGTAGTTTTTCCGGCTGATTAGTTCT
TCAATAATGAATGAATGAACGATGATGCA------GCTGCAGC---AGCTGCTGTTCTTCGCGCCAGCTT-AGCC---TT
GTTCTTTCTTCTTGCCTAGTAGCAGCTGTGATGTTACCCAAGTAGTAGTAGCAG----TATCCTAGTAGTAGTAGCAGCA
GTAGTAGTGTGTAACATTGCAGTGTAAGAATTGAGAGAGCTTTATGAATGATGAACCATCTTTGTGGCTCCAGATCTGTG
CAATCTTGTCCCCTTTTCAGCTGAAATCTATCCCAGCTGATCTGCCTTGTTGAGCTGATGTGATGAATCTGAATCTTTGT
GGCTCCAGATCTGTGCAAG-------------------------------------------------------------
-----------------------------CACTCTCCTTTTCACCTGAAAGGGTGCTTCATACCAGCTCCAGATCTGTGC
AAGCGCCCGCCTTTTCTCTT------------------------------------------------------------
----------------------------------------------------------C---------------------
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>SNPs
---S--S-S----------S--S---S--------SSS-SSS-S----------------------------------S-
-----------------S------S-----S---SSS-------------------S---S-------------------
-------------------------S-----------------------------------S-S----------------
---S-------------------------------S-S----------------------------S-------------
-----S-----------------------------------S-S-------S----------------------------
--------------------------------------------------------------S-----------------
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-----------------------------SSSSSSSSS-------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S---------------------
--------S----------------------S---SS-------------------------------------------
----------------------------------------------------S--------S------------------
------------------------------------------------------S-------------------------
--S---------------------S-----------------------------S-------------------------
-----------------------------------S--------------------------------------------
---------S----------------------------------S-S---------------SSSS-----------S--
SSS-------------------------------SSS-------------------------------------------
------------------------------------------S-----------------------------------S-
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------S---------S------S--------------------------------------------------------
-----------------------------------S--------------------------------------------
SSSSS---------------------------------------------------------------------------
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-------------------------------------------------------S----------------------S-
-S-----S-------------------SSSSSSSS--S--------------------------------S---------
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-----------------SS------S-------------------------------------------------S----
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-------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--------------------S--S---------------
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S-------------SS----------S--------------------------S-S--SS--------------------
----------------------------------S-SS-----------------SS------S----------------
-----------------------------------------------SSSSSSSS----------------------S--
----------------------S------------------------SSSSS----S-S----------SS----S---S
----S-----------S--SS----------------------------------------------SS-----S-S---
--S----------------------------------------------S---S---S----------S---SSS--SSS
SS-------------S-------S--S-------------------------S-SS-S-SSSS-SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_224
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--------------------------------------------ACCATCATCCATCCATGCGC----------------
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>reverse_2799
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------------------------------------------------------------------------------GA
GTCTTTGCGGCTCCAGAT--------------------------------------------------------------
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