Multiple sequence alignment - TraesCS4A01G361000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G361000 chr4A 100.000 2804 0 0 1 2804 634510788 634507985 0.000000e+00 5179.0
1 TraesCS4A01G361000 chr4A 96.677 331 10 1 1 330 22220010 22219680 1.470000e-152 549.0
2 TraesCS4A01G361000 chr4A 92.453 53 3 1 345 396 634525151 634525099 1.080000e-09 75.0
3 TraesCS4A01G361000 chr5D 90.321 2521 129 37 344 2804 536693727 536696192 0.000000e+00 3197.0
4 TraesCS4A01G361000 chr5B 90.097 1949 116 34 511 2437 677346703 677348596 0.000000e+00 2459.0
5 TraesCS4A01G361000 chr5B 89.404 302 23 2 40 341 463971713 463972005 3.410000e-99 372.0
6 TraesCS4A01G361000 chr5B 88.645 273 25 4 2533 2804 677379116 677379383 7.490000e-86 327.0
7 TraesCS4A01G361000 chr5B 76.753 271 25 20 345 605 687107111 687107353 1.760000e-22 117.0
8 TraesCS4A01G361000 chr5B 79.839 124 17 2 1670 1785 469490164 469490287 1.790000e-12 84.2
9 TraesCS4A01G361000 chr6A 96.793 343 11 0 1 343 610191505 610191163 8.710000e-160 573.0
10 TraesCS4A01G361000 chr6A 96.243 346 13 0 1 346 34553189 34552844 4.050000e-158 568.0
11 TraesCS4A01G361000 chr6A 76.349 241 54 3 2315 2553 80651247 80651008 2.930000e-25 126.0
12 TraesCS4A01G361000 chr1A 94.769 325 16 1 1 325 72552892 72552569 3.220000e-139 505.0
13 TraesCS4A01G361000 chr1B 92.375 341 25 1 1 341 590519319 590519658 4.200000e-133 484.0
14 TraesCS4A01G361000 chr1B 87.966 349 39 3 1 348 409280579 409280233 2.600000e-110 409.0
15 TraesCS4A01G361000 chr3A 96.454 282 10 0 61 342 691993110 691993391 1.520000e-127 466.0
16 TraesCS4A01G361000 chr3A 93.878 49 1 2 1 49 651595702 651595656 3.870000e-09 73.1
17 TraesCS4A01G361000 chr6B 87.246 345 42 2 1 344 640331433 640331776 2.620000e-105 392.0
18 TraesCS4A01G361000 chr7D 77.905 525 87 19 2286 2804 130225223 130224722 1.630000e-77 300.0
19 TraesCS4A01G361000 chr6D 80.258 233 38 4 1580 1804 107800718 107800486 4.800000e-38 169.0
20 TraesCS4A01G361000 chr2D 80.841 214 33 4 1580 1785 429963942 429963729 8.040000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G361000 chr4A 634507985 634510788 2803 True 5179 5179 100.000 1 2804 1 chr4A.!!$R2 2803
1 TraesCS4A01G361000 chr5D 536693727 536696192 2465 False 3197 3197 90.321 344 2804 1 chr5D.!!$F1 2460
2 TraesCS4A01G361000 chr5B 677346703 677348596 1893 False 2459 2459 90.097 511 2437 1 chr5B.!!$F3 1926
3 TraesCS4A01G361000 chr7D 130224722 130225223 501 True 300 300 77.905 2286 2804 1 chr7D.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 435 0.03213 TATGCTCGAAGATGGGTCGC 59.968 55.0 0.0 0.0 38.39 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2207 2258 0.178921 TCTGAGAGGTGCCCAGACTT 60.179 55.0 0.0 0.0 32.57 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.642683 GAAGATCATGTTGCAAGGAATTTG 57.357 37.500 0.00 0.00 39.88 2.32
24 25 5.988310 AGATCATGTTGCAAGGAATTTGA 57.012 34.783 0.00 0.00 39.21 2.69
25 26 6.349243 AGATCATGTTGCAAGGAATTTGAA 57.651 33.333 0.00 0.00 39.21 2.69
26 27 6.942976 AGATCATGTTGCAAGGAATTTGAAT 58.057 32.000 0.00 0.00 39.21 2.57
27 28 7.039882 AGATCATGTTGCAAGGAATTTGAATC 58.960 34.615 0.00 0.00 39.21 2.52
28 29 6.349243 TCATGTTGCAAGGAATTTGAATCT 57.651 33.333 0.00 0.00 39.21 2.40
29 30 7.465353 TCATGTTGCAAGGAATTTGAATCTA 57.535 32.000 0.00 0.00 39.21 1.98
30 31 7.315142 TCATGTTGCAAGGAATTTGAATCTAC 58.685 34.615 0.00 0.00 39.21 2.59
31 32 6.647334 TGTTGCAAGGAATTTGAATCTACA 57.353 33.333 0.00 0.00 39.21 2.74
32 33 7.048629 TGTTGCAAGGAATTTGAATCTACAA 57.951 32.000 0.00 0.00 39.21 2.41
33 34 7.495901 TGTTGCAAGGAATTTGAATCTACAAA 58.504 30.769 0.00 0.00 42.58 2.83
34 35 7.984050 TGTTGCAAGGAATTTGAATCTACAAAA 59.016 29.630 0.00 0.00 41.88 2.44
35 36 8.825745 GTTGCAAGGAATTTGAATCTACAAAAA 58.174 29.630 0.00 0.00 41.88 1.94
90 91 7.936496 TGATGACCATCTAAAATTGTAAGCA 57.064 32.000 10.87 0.00 38.60 3.91
91 92 8.347004 TGATGACCATCTAAAATTGTAAGCAA 57.653 30.769 10.87 0.00 38.60 3.91
92 93 8.801299 TGATGACCATCTAAAATTGTAAGCAAA 58.199 29.630 10.87 0.00 37.15 3.68
93 94 9.638239 GATGACCATCTAAAATTGTAAGCAAAA 57.362 29.630 2.91 0.00 35.23 2.44
94 95 9.995003 ATGACCATCTAAAATTGTAAGCAAAAA 57.005 25.926 0.00 0.00 38.21 1.94
95 96 9.995003 TGACCATCTAAAATTGTAAGCAAAAAT 57.005 25.926 0.00 0.00 38.21 1.82
106 107 9.620259 AATTGTAAGCAAAAATAAAAAGGTGGA 57.380 25.926 0.00 0.00 38.21 4.02
107 108 9.791801 ATTGTAAGCAAAAATAAAAAGGTGGAT 57.208 25.926 0.00 0.00 38.21 3.41
108 109 9.620259 TTGTAAGCAAAAATAAAAAGGTGGATT 57.380 25.926 0.00 0.00 0.00 3.01
109 110 9.620259 TGTAAGCAAAAATAAAAAGGTGGATTT 57.380 25.926 0.00 0.00 0.00 2.17
110 111 9.877137 GTAAGCAAAAATAAAAAGGTGGATTTG 57.123 29.630 0.00 0.00 0.00 2.32
111 112 8.518430 AAGCAAAAATAAAAAGGTGGATTTGT 57.482 26.923 0.00 0.00 0.00 2.83
112 113 8.518430 AGCAAAAATAAAAAGGTGGATTTGTT 57.482 26.923 0.00 0.00 0.00 2.83
113 114 8.965819 AGCAAAAATAAAAAGGTGGATTTGTTT 58.034 25.926 0.00 0.00 33.20 2.83
114 115 9.018716 GCAAAAATAAAAAGGTGGATTTGTTTG 57.981 29.630 0.00 0.00 32.50 2.93
115 116 9.513727 CAAAAATAAAAAGGTGGATTTGTTTGG 57.486 29.630 0.00 0.00 32.50 3.28
116 117 7.815840 AAATAAAAAGGTGGATTTGTTTGGG 57.184 32.000 0.00 0.00 31.44 4.12
117 118 6.755542 ATAAAAAGGTGGATTTGTTTGGGA 57.244 33.333 0.00 0.00 0.00 4.37
118 119 4.687901 AAAAGGTGGATTTGTTTGGGAG 57.312 40.909 0.00 0.00 0.00 4.30
119 120 1.632589 AGGTGGATTTGTTTGGGAGC 58.367 50.000 0.00 0.00 0.00 4.70
120 121 0.243636 GGTGGATTTGTTTGGGAGCG 59.756 55.000 0.00 0.00 0.00 5.03
121 122 0.243636 GTGGATTTGTTTGGGAGCGG 59.756 55.000 0.00 0.00 0.00 5.52
122 123 0.897863 TGGATTTGTTTGGGAGCGGG 60.898 55.000 0.00 0.00 0.00 6.13
123 124 0.610785 GGATTTGTTTGGGAGCGGGA 60.611 55.000 0.00 0.00 0.00 5.14
124 125 1.253100 GATTTGTTTGGGAGCGGGAA 58.747 50.000 0.00 0.00 0.00 3.97
125 126 1.202348 GATTTGTTTGGGAGCGGGAAG 59.798 52.381 0.00 0.00 0.00 3.46
126 127 0.183971 TTTGTTTGGGAGCGGGAAGA 59.816 50.000 0.00 0.00 0.00 2.87
127 128 0.250727 TTGTTTGGGAGCGGGAAGAG 60.251 55.000 0.00 0.00 0.00 2.85
128 129 1.125093 TGTTTGGGAGCGGGAAGAGA 61.125 55.000 0.00 0.00 0.00 3.10
129 130 0.391793 GTTTGGGAGCGGGAAGAGAG 60.392 60.000 0.00 0.00 0.00 3.20
130 131 1.553690 TTTGGGAGCGGGAAGAGAGG 61.554 60.000 0.00 0.00 0.00 3.69
131 132 2.042843 GGGAGCGGGAAGAGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
132 133 1.686110 GGGAGCGGGAAGAGAGGAA 60.686 63.158 0.00 0.00 0.00 3.36
133 134 1.265454 GGGAGCGGGAAGAGAGGAAA 61.265 60.000 0.00 0.00 0.00 3.13
134 135 0.613777 GGAGCGGGAAGAGAGGAAAA 59.386 55.000 0.00 0.00 0.00 2.29
135 136 1.003233 GGAGCGGGAAGAGAGGAAAAA 59.997 52.381 0.00 0.00 0.00 1.94
136 137 2.351455 GAGCGGGAAGAGAGGAAAAAG 58.649 52.381 0.00 0.00 0.00 2.27
137 138 1.003696 AGCGGGAAGAGAGGAAAAAGG 59.996 52.381 0.00 0.00 0.00 3.11
138 139 1.271434 GCGGGAAGAGAGGAAAAAGGT 60.271 52.381 0.00 0.00 0.00 3.50
139 140 2.814469 GCGGGAAGAGAGGAAAAAGGTT 60.814 50.000 0.00 0.00 0.00 3.50
140 141 2.814336 CGGGAAGAGAGGAAAAAGGTTG 59.186 50.000 0.00 0.00 0.00 3.77
141 142 2.558795 GGGAAGAGAGGAAAAAGGTTGC 59.441 50.000 0.00 0.00 0.00 4.17
142 143 3.222603 GGAAGAGAGGAAAAAGGTTGCA 58.777 45.455 0.00 0.00 0.00 4.08
143 144 3.829026 GGAAGAGAGGAAAAAGGTTGCAT 59.171 43.478 0.00 0.00 0.00 3.96
144 145 4.321527 GGAAGAGAGGAAAAAGGTTGCATG 60.322 45.833 0.00 0.00 0.00 4.06
145 146 2.560105 AGAGAGGAAAAAGGTTGCATGC 59.440 45.455 11.82 11.82 0.00 4.06
146 147 2.297033 GAGAGGAAAAAGGTTGCATGCA 59.703 45.455 18.46 18.46 0.00 3.96
147 148 2.901839 AGAGGAAAAAGGTTGCATGCAT 59.098 40.909 23.37 3.89 0.00 3.96
148 149 2.997986 GAGGAAAAAGGTTGCATGCATG 59.002 45.455 23.37 22.70 0.00 4.06
159 160 2.862738 CATGCATGCTGAGGTGACA 58.137 52.632 20.33 0.00 0.00 3.58
160 161 1.170442 CATGCATGCTGAGGTGACAA 58.830 50.000 20.33 0.00 0.00 3.18
161 162 1.542472 CATGCATGCTGAGGTGACAAA 59.458 47.619 20.33 0.00 0.00 2.83
162 163 1.241165 TGCATGCTGAGGTGACAAAG 58.759 50.000 20.33 0.00 0.00 2.77
163 164 0.109412 GCATGCTGAGGTGACAAAGC 60.109 55.000 11.37 0.00 40.39 3.51
164 165 1.531423 CATGCTGAGGTGACAAAGCT 58.469 50.000 5.27 0.00 40.55 3.74
165 166 1.199327 CATGCTGAGGTGACAAAGCTG 59.801 52.381 0.00 0.00 40.55 4.24
166 167 0.469494 TGCTGAGGTGACAAAGCTGA 59.531 50.000 0.00 0.00 40.55 4.26
167 168 0.871057 GCTGAGGTGACAAAGCTGAC 59.129 55.000 0.00 0.00 36.52 3.51
168 169 1.811558 GCTGAGGTGACAAAGCTGACA 60.812 52.381 0.00 0.00 36.52 3.58
169 170 2.775890 CTGAGGTGACAAAGCTGACAT 58.224 47.619 0.00 0.00 36.52 3.06
170 171 3.866066 GCTGAGGTGACAAAGCTGACATA 60.866 47.826 0.00 0.00 36.52 2.29
171 172 3.664107 TGAGGTGACAAAGCTGACATAC 58.336 45.455 0.00 0.00 36.52 2.39
172 173 3.324846 TGAGGTGACAAAGCTGACATACT 59.675 43.478 0.00 0.00 36.52 2.12
173 174 4.526650 TGAGGTGACAAAGCTGACATACTA 59.473 41.667 0.00 0.00 36.52 1.82
174 175 5.078411 AGGTGACAAAGCTGACATACTAG 57.922 43.478 0.00 0.00 34.56 2.57
175 176 4.528596 AGGTGACAAAGCTGACATACTAGT 59.471 41.667 0.00 0.00 34.56 2.57
176 177 5.715279 AGGTGACAAAGCTGACATACTAGTA 59.285 40.000 4.77 4.77 34.56 1.82
177 178 5.805994 GGTGACAAAGCTGACATACTAGTAC 59.194 44.000 4.31 0.00 30.00 2.73
178 179 6.387465 GTGACAAAGCTGACATACTAGTACA 58.613 40.000 4.31 0.00 30.00 2.90
179 180 6.866770 GTGACAAAGCTGACATACTAGTACAA 59.133 38.462 4.31 0.00 30.00 2.41
180 181 7.384115 GTGACAAAGCTGACATACTAGTACAAA 59.616 37.037 4.31 0.00 30.00 2.83
181 182 8.094548 TGACAAAGCTGACATACTAGTACAAAT 58.905 33.333 4.31 0.00 0.00 2.32
182 183 9.582431 GACAAAGCTGACATACTAGTACAAATA 57.418 33.333 4.31 0.00 0.00 1.40
183 184 9.587772 ACAAAGCTGACATACTAGTACAAATAG 57.412 33.333 4.31 2.17 0.00 1.73
184 185 9.587772 CAAAGCTGACATACTAGTACAAATAGT 57.412 33.333 4.31 0.00 37.29 2.12
185 186 9.587772 AAAGCTGACATACTAGTACAAATAGTG 57.412 33.333 4.31 0.23 35.20 2.74
186 187 7.717568 AGCTGACATACTAGTACAAATAGTGG 58.282 38.462 4.31 0.00 35.20 4.00
187 188 6.924060 GCTGACATACTAGTACAAATAGTGGG 59.076 42.308 4.31 0.00 35.20 4.61
188 189 7.417570 GCTGACATACTAGTACAAATAGTGGGT 60.418 40.741 4.31 0.00 35.20 4.51
189 190 8.004087 TGACATACTAGTACAAATAGTGGGTC 57.996 38.462 4.31 13.71 37.72 4.46
190 191 7.616542 TGACATACTAGTACAAATAGTGGGTCA 59.383 37.037 4.31 16.59 40.89 4.02
191 192 8.548880 ACATACTAGTACAAATAGTGGGTCAT 57.451 34.615 4.31 0.00 35.20 3.06
192 193 8.639761 ACATACTAGTACAAATAGTGGGTCATC 58.360 37.037 4.31 0.00 35.20 2.92
193 194 6.481434 ACTAGTACAAATAGTGGGTCATCC 57.519 41.667 0.00 0.00 32.27 3.51
194 195 6.203072 ACTAGTACAAATAGTGGGTCATCCT 58.797 40.000 0.00 0.00 32.27 3.24
195 196 5.615925 AGTACAAATAGTGGGTCATCCTC 57.384 43.478 0.00 0.00 36.20 3.71
196 197 3.933861 ACAAATAGTGGGTCATCCTCC 57.066 47.619 0.00 0.00 36.20 4.30
197 198 3.464828 ACAAATAGTGGGTCATCCTCCT 58.535 45.455 0.00 0.00 36.20 3.69
198 199 3.200825 ACAAATAGTGGGTCATCCTCCTG 59.799 47.826 0.00 0.00 36.20 3.86
199 200 3.421394 AATAGTGGGTCATCCTCCTGA 57.579 47.619 0.00 0.00 36.20 3.86
200 201 2.160721 TAGTGGGTCATCCTCCTGAC 57.839 55.000 0.00 0.00 43.90 3.51
201 202 0.117140 AGTGGGTCATCCTCCTGACA 59.883 55.000 6.55 0.00 45.95 3.58
202 203 1.207791 GTGGGTCATCCTCCTGACAT 58.792 55.000 6.55 0.00 45.95 3.06
203 204 2.023015 AGTGGGTCATCCTCCTGACATA 60.023 50.000 6.55 0.00 45.95 2.29
204 205 2.975489 GTGGGTCATCCTCCTGACATAT 59.025 50.000 6.55 0.00 45.95 1.78
205 206 3.392616 GTGGGTCATCCTCCTGACATATT 59.607 47.826 6.55 0.00 45.95 1.28
206 207 4.593206 GTGGGTCATCCTCCTGACATATTA 59.407 45.833 6.55 0.00 45.95 0.98
207 208 4.593206 TGGGTCATCCTCCTGACATATTAC 59.407 45.833 6.55 0.00 45.95 1.89
208 209 4.593206 GGGTCATCCTCCTGACATATTACA 59.407 45.833 6.55 0.00 45.95 2.41
209 210 5.071788 GGGTCATCCTCCTGACATATTACAA 59.928 44.000 6.55 0.00 45.95 2.41
210 211 6.240002 GGGTCATCCTCCTGACATATTACAAT 60.240 42.308 6.55 0.00 45.95 2.71
211 212 6.652481 GGTCATCCTCCTGACATATTACAATG 59.348 42.308 6.55 0.00 45.95 2.82
212 213 7.445121 GTCATCCTCCTGACATATTACAATGA 58.555 38.462 0.00 0.00 44.03 2.57
213 214 8.099537 GTCATCCTCCTGACATATTACAATGAT 58.900 37.037 0.00 0.00 44.03 2.45
214 215 9.325248 TCATCCTCCTGACATATTACAATGATA 57.675 33.333 0.00 0.00 0.00 2.15
242 243 8.849543 TTAGAGGTGGGTTATAGAAATACAGT 57.150 34.615 0.00 0.00 0.00 3.55
243 244 7.125792 AGAGGTGGGTTATAGAAATACAGTG 57.874 40.000 0.00 0.00 0.00 3.66
244 245 5.681639 AGGTGGGTTATAGAAATACAGTGC 58.318 41.667 0.00 0.00 0.00 4.40
245 246 5.428783 AGGTGGGTTATAGAAATACAGTGCT 59.571 40.000 0.00 0.00 0.00 4.40
246 247 6.614087 AGGTGGGTTATAGAAATACAGTGCTA 59.386 38.462 0.00 0.00 0.00 3.49
247 248 7.292591 AGGTGGGTTATAGAAATACAGTGCTAT 59.707 37.037 0.00 0.00 0.00 2.97
248 249 8.591072 GGTGGGTTATAGAAATACAGTGCTATA 58.409 37.037 0.00 0.00 0.00 1.31
249 250 9.420551 GTGGGTTATAGAAATACAGTGCTATAC 57.579 37.037 0.00 0.00 0.00 1.47
250 251 9.150028 TGGGTTATAGAAATACAGTGCTATACA 57.850 33.333 0.00 0.00 0.00 2.29
251 252 9.991906 GGGTTATAGAAATACAGTGCTATACAA 57.008 33.333 0.00 0.00 0.00 2.41
257 258 8.268850 AGAAATACAGTGCTATACAAAAGGTG 57.731 34.615 0.00 0.00 0.00 4.00
258 259 7.336931 AGAAATACAGTGCTATACAAAAGGTGG 59.663 37.037 0.00 0.00 0.00 4.61
259 260 3.686016 ACAGTGCTATACAAAAGGTGGG 58.314 45.455 0.00 0.00 0.00 4.61
260 261 2.423538 CAGTGCTATACAAAAGGTGGGC 59.576 50.000 0.00 0.00 0.00 5.36
261 262 1.749063 GTGCTATACAAAAGGTGGGCC 59.251 52.381 0.00 0.00 0.00 5.80
262 263 1.356059 TGCTATACAAAAGGTGGGCCA 59.644 47.619 0.00 0.00 37.19 5.36
263 264 1.749063 GCTATACAAAAGGTGGGCCAC 59.251 52.381 28.69 28.69 37.19 5.01
264 265 2.014128 CTATACAAAAGGTGGGCCACG 58.986 52.381 29.18 17.74 34.83 4.94
265 266 0.402504 ATACAAAAGGTGGGCCACGA 59.597 50.000 29.18 9.28 34.83 4.35
266 267 0.535553 TACAAAAGGTGGGCCACGAC 60.536 55.000 29.18 17.10 34.83 4.34
267 268 2.593436 AAAAGGTGGGCCACGACG 60.593 61.111 29.18 0.00 34.83 5.12
268 269 3.109592 AAAAGGTGGGCCACGACGA 62.110 57.895 29.18 0.00 34.83 4.20
269 270 3.819877 AAAGGTGGGCCACGACGAC 62.820 63.158 29.18 15.61 34.83 4.34
277 278 2.803670 CCACGACGACGCACGAAT 60.804 61.111 18.80 0.00 45.77 3.34
278 279 2.681666 CACGACGACGCACGAATC 59.318 61.111 18.80 0.00 45.77 2.52
279 280 2.868331 ACGACGACGCACGAATCG 60.868 61.111 18.80 0.00 45.77 3.34
280 281 4.234340 CGACGACGCACGAATCGC 62.234 66.667 1.15 0.00 45.77 4.58
281 282 3.169924 GACGACGCACGAATCGCA 61.170 61.111 1.15 0.00 45.77 5.10
282 283 2.712918 GACGACGCACGAATCGCAA 61.713 57.895 1.15 0.00 45.77 4.85
283 284 2.205595 GACGACGCACGAATCGCAAA 62.206 55.000 1.15 0.00 45.77 3.68
284 285 1.853192 CGACGCACGAATCGCAAAC 60.853 57.895 1.15 0.00 45.77 2.93
285 286 1.509162 GACGCACGAATCGCAAACC 60.509 57.895 1.15 0.00 0.00 3.27
286 287 2.202298 CGCACGAATCGCAAACCC 60.202 61.111 1.15 0.00 0.00 4.11
287 288 2.950673 GCACGAATCGCAAACCCA 59.049 55.556 1.15 0.00 0.00 4.51
288 289 1.154225 GCACGAATCGCAAACCCAG 60.154 57.895 1.15 0.00 0.00 4.45
289 290 1.154225 CACGAATCGCAAACCCAGC 60.154 57.895 1.15 0.00 0.00 4.85
296 297 4.700365 GCAAACCCAGCGAACGGC 62.700 66.667 0.00 0.00 44.05 5.68
313 314 3.391355 CGGATCGTTTGCCGGTAC 58.609 61.111 1.90 0.00 43.67 3.34
314 315 1.446445 CGGATCGTTTGCCGGTACA 60.446 57.895 1.90 0.00 43.67 2.90
315 316 0.808453 CGGATCGTTTGCCGGTACAT 60.808 55.000 1.90 0.00 43.67 2.29
316 317 0.935196 GGATCGTTTGCCGGTACATC 59.065 55.000 1.90 5.59 37.11 3.06
317 318 0.935196 GATCGTTTGCCGGTACATCC 59.065 55.000 1.90 0.00 37.11 3.51
318 319 0.463116 ATCGTTTGCCGGTACATCCC 60.463 55.000 1.90 0.00 37.11 3.85
319 320 1.078708 CGTTTGCCGGTACATCCCT 60.079 57.895 1.90 0.00 0.00 4.20
320 321 1.366111 CGTTTGCCGGTACATCCCTG 61.366 60.000 1.90 0.00 0.00 4.45
321 322 0.035820 GTTTGCCGGTACATCCCTGA 60.036 55.000 1.90 0.00 0.00 3.86
322 323 0.693622 TTTGCCGGTACATCCCTGAA 59.306 50.000 1.90 0.00 0.00 3.02
323 324 0.035820 TTGCCGGTACATCCCTGAAC 60.036 55.000 1.90 0.00 0.00 3.18
324 325 1.153229 GCCGGTACATCCCTGAACC 60.153 63.158 1.90 0.00 0.00 3.62
327 328 2.293877 GGTACATCCCTGAACCGGT 58.706 57.895 0.00 0.00 0.00 5.28
328 329 1.488390 GGTACATCCCTGAACCGGTA 58.512 55.000 8.00 0.00 0.00 4.02
329 330 1.832998 GGTACATCCCTGAACCGGTAA 59.167 52.381 8.00 0.00 0.00 2.85
330 331 2.236893 GGTACATCCCTGAACCGGTAAA 59.763 50.000 8.00 0.00 0.00 2.01
331 332 3.307621 GGTACATCCCTGAACCGGTAAAA 60.308 47.826 8.00 0.00 0.00 1.52
332 333 2.786777 ACATCCCTGAACCGGTAAAAC 58.213 47.619 8.00 0.23 0.00 2.43
333 334 2.106857 ACATCCCTGAACCGGTAAAACA 59.893 45.455 8.00 5.50 0.00 2.83
334 335 2.554370 TCCCTGAACCGGTAAAACAG 57.446 50.000 8.00 14.96 0.00 3.16
335 336 2.048601 TCCCTGAACCGGTAAAACAGA 58.951 47.619 23.15 9.81 0.00 3.41
336 337 2.148768 CCCTGAACCGGTAAAACAGAC 58.851 52.381 23.15 5.67 0.00 3.51
337 338 2.224450 CCCTGAACCGGTAAAACAGACT 60.224 50.000 23.15 1.45 0.00 3.24
338 339 3.473625 CCTGAACCGGTAAAACAGACTT 58.526 45.455 23.15 0.76 0.00 3.01
339 340 3.881089 CCTGAACCGGTAAAACAGACTTT 59.119 43.478 23.15 0.28 0.00 2.66
340 341 4.261031 CCTGAACCGGTAAAACAGACTTTG 60.261 45.833 23.15 9.57 0.00 2.77
341 342 3.065648 TGAACCGGTAAAACAGACTTTGC 59.934 43.478 8.00 0.00 0.00 3.68
342 343 1.600485 ACCGGTAAAACAGACTTTGCG 59.400 47.619 4.49 0.00 0.00 4.85
343 344 1.662026 CCGGTAAAACAGACTTTGCGC 60.662 52.381 0.00 0.00 0.00 6.09
344 345 1.670326 GGTAAAACAGACTTTGCGCG 58.330 50.000 0.00 0.00 0.00 6.86
345 346 1.042475 GTAAAACAGACTTTGCGCGC 58.958 50.000 27.26 27.26 0.00 6.86
346 347 0.941542 TAAAACAGACTTTGCGCGCT 59.058 45.000 33.29 12.33 0.00 5.92
347 348 0.592247 AAAACAGACTTTGCGCGCTG 60.592 50.000 33.29 22.68 34.65 5.18
348 349 2.392613 AAACAGACTTTGCGCGCTGG 62.393 55.000 33.29 22.59 32.82 4.85
349 350 4.748679 CAGACTTTGCGCGCTGGC 62.749 66.667 33.29 23.30 0.00 4.85
396 397 3.287222 CTGGTTCTTTCCACCAACTTCA 58.713 45.455 0.00 0.00 43.96 3.02
417 418 5.165676 TCATTCTAGAACAACAACGCGTAT 58.834 37.500 14.46 0.00 0.00 3.06
421 422 1.459592 AGAACAACAACGCGTATGCTC 59.540 47.619 14.46 13.09 39.65 4.26
430 431 1.278172 CGCGTATGCTCGAAGATGGG 61.278 60.000 5.20 0.00 39.65 4.00
433 434 1.772182 GTATGCTCGAAGATGGGTCG 58.228 55.000 0.00 0.00 39.88 4.79
434 435 0.032130 TATGCTCGAAGATGGGTCGC 59.968 55.000 0.00 0.00 38.39 5.19
435 436 1.960040 ATGCTCGAAGATGGGTCGCA 61.960 55.000 0.00 0.00 38.39 5.10
436 437 1.880340 GCTCGAAGATGGGTCGCAG 60.880 63.158 0.00 0.00 38.39 5.18
437 438 1.809869 CTCGAAGATGGGTCGCAGA 59.190 57.895 0.00 0.00 38.39 4.26
438 439 0.387202 CTCGAAGATGGGTCGCAGAT 59.613 55.000 0.00 0.00 38.39 2.90
439 440 0.824109 TCGAAGATGGGTCGCAGATT 59.176 50.000 0.00 0.00 40.67 2.40
440 441 1.207089 TCGAAGATGGGTCGCAGATTT 59.793 47.619 0.00 0.00 40.67 2.17
462 463 2.093288 GCAGACCATCAGATCCAACTCA 60.093 50.000 0.00 0.00 0.00 3.41
463 464 3.433314 GCAGACCATCAGATCCAACTCAT 60.433 47.826 0.00 0.00 0.00 2.90
464 465 4.202295 GCAGACCATCAGATCCAACTCATA 60.202 45.833 0.00 0.00 0.00 2.15
465 466 5.539979 CAGACCATCAGATCCAACTCATAG 58.460 45.833 0.00 0.00 0.00 2.23
466 467 5.303845 CAGACCATCAGATCCAACTCATAGA 59.696 44.000 0.00 0.00 0.00 1.98
467 468 6.014413 CAGACCATCAGATCCAACTCATAGAT 60.014 42.308 0.00 0.00 0.00 1.98
468 469 6.558014 AGACCATCAGATCCAACTCATAGATT 59.442 38.462 0.00 0.00 0.00 2.40
469 470 6.531923 ACCATCAGATCCAACTCATAGATTG 58.468 40.000 0.00 0.00 0.00 2.67
470 471 6.100859 ACCATCAGATCCAACTCATAGATTGT 59.899 38.462 0.00 0.00 0.00 2.71
471 472 6.996879 CCATCAGATCCAACTCATAGATTGTT 59.003 38.462 0.00 0.00 0.00 2.83
475 476 8.950210 TCAGATCCAACTCATAGATTGTTTTTC 58.050 33.333 0.00 0.00 0.00 2.29
486 487 5.261040 AGATTGTTTTTCTCCTCCATCCA 57.739 39.130 0.00 0.00 0.00 3.41
487 488 5.835582 AGATTGTTTTTCTCCTCCATCCAT 58.164 37.500 0.00 0.00 0.00 3.41
488 489 5.890419 AGATTGTTTTTCTCCTCCATCCATC 59.110 40.000 0.00 0.00 0.00 3.51
489 490 4.934797 TGTTTTTCTCCTCCATCCATCT 57.065 40.909 0.00 0.00 0.00 2.90
490 491 5.261040 TGTTTTTCTCCTCCATCCATCTT 57.739 39.130 0.00 0.00 0.00 2.40
491 492 5.012239 TGTTTTTCTCCTCCATCCATCTTG 58.988 41.667 0.00 0.00 0.00 3.02
492 493 5.222109 TGTTTTTCTCCTCCATCCATCTTGA 60.222 40.000 0.00 0.00 0.00 3.02
493 494 5.722172 TTTTCTCCTCCATCCATCTTGAT 57.278 39.130 0.00 0.00 0.00 2.57
494 495 4.970860 TTCTCCTCCATCCATCTTGATC 57.029 45.455 0.00 0.00 0.00 2.92
495 496 3.932601 TCTCCTCCATCCATCTTGATCA 58.067 45.455 0.00 0.00 0.00 2.92
496 497 3.645212 TCTCCTCCATCCATCTTGATCAC 59.355 47.826 0.00 0.00 0.00 3.06
497 498 3.647113 CTCCTCCATCCATCTTGATCACT 59.353 47.826 0.00 0.00 0.00 3.41
498 499 4.819610 TCCTCCATCCATCTTGATCACTA 58.180 43.478 0.00 0.00 0.00 2.74
499 500 5.409712 TCCTCCATCCATCTTGATCACTAT 58.590 41.667 0.00 0.00 0.00 2.12
500 501 6.565036 TCCTCCATCCATCTTGATCACTATA 58.435 40.000 0.00 0.00 0.00 1.31
501 502 6.438741 TCCTCCATCCATCTTGATCACTATAC 59.561 42.308 0.00 0.00 0.00 1.47
502 503 6.440010 CCTCCATCCATCTTGATCACTATACT 59.560 42.308 0.00 0.00 0.00 2.12
503 504 7.617329 CCTCCATCCATCTTGATCACTATACTA 59.383 40.741 0.00 0.00 0.00 1.82
504 505 8.354711 TCCATCCATCTTGATCACTATACTAC 57.645 38.462 0.00 0.00 0.00 2.73
505 506 7.121315 TCCATCCATCTTGATCACTATACTACG 59.879 40.741 0.00 0.00 0.00 3.51
506 507 7.094162 CCATCCATCTTGATCACTATACTACGT 60.094 40.741 0.00 0.00 0.00 3.57
507 508 8.947115 CATCCATCTTGATCACTATACTACGTA 58.053 37.037 0.00 0.00 0.00 3.57
508 509 8.320396 TCCATCTTGATCACTATACTACGTAC 57.680 38.462 0.00 0.00 0.00 3.67
509 510 8.155510 TCCATCTTGATCACTATACTACGTACT 58.844 37.037 0.00 0.00 0.00 2.73
531 532 7.769272 ACTATCAAACAAACAAACATGTTGG 57.231 32.000 12.82 12.18 39.57 3.77
532 533 7.327214 ACTATCAAACAAACAAACATGTTGGT 58.673 30.769 13.09 13.09 39.57 3.67
540 541 8.082334 ACAAACAAACATGTTGGTTATATTGC 57.918 30.769 27.57 0.00 35.78 3.56
546 547 8.530720 CAAACATGTTGGTTATATTGCGTAATG 58.469 33.333 12.82 0.00 0.00 1.90
547 548 7.561021 ACATGTTGGTTATATTGCGTAATGA 57.439 32.000 9.16 0.00 0.00 2.57
563 567 4.150980 CGTAATGACGGTGTAATGTTGTGT 59.849 41.667 0.00 0.00 45.63 3.72
590 598 2.435586 CTTGACAGGGGCGAGCAG 60.436 66.667 0.00 0.00 0.00 4.24
591 599 3.965539 CTTGACAGGGGCGAGCAGG 62.966 68.421 0.00 0.00 0.00 4.85
632 640 4.335647 AAGGTGTCCGCCTGCCTG 62.336 66.667 0.00 0.00 39.17 4.85
666 674 3.127533 GACCATGGCCACGTGCTC 61.128 66.667 8.16 4.66 40.92 4.26
696 704 3.316573 CTGTTCCTCCCTGTCGCCC 62.317 68.421 0.00 0.00 0.00 6.13
722 730 0.462759 CCGCCTCCACAGATTCTTCC 60.463 60.000 0.00 0.00 0.00 3.46
741 749 2.774234 TCCTCCTCCTCCATTTCATCAC 59.226 50.000 0.00 0.00 0.00 3.06
781 805 2.871133 TCGCAAACGTAGGATGTACAG 58.129 47.619 0.33 0.00 41.18 2.74
854 878 0.101399 TGACGCGGTTGCATTTGTTT 59.899 45.000 12.47 0.00 42.97 2.83
883 917 6.673154 AAACGAAGCCCTATATAAACACAC 57.327 37.500 0.00 0.00 0.00 3.82
928 964 1.073964 CACTTCTCCACAGCACATCG 58.926 55.000 0.00 0.00 0.00 3.84
931 967 2.146342 CTTCTCCACAGCACATCGTTT 58.854 47.619 0.00 0.00 0.00 3.60
932 968 1.511850 TCTCCACAGCACATCGTTTG 58.488 50.000 0.00 0.00 0.00 2.93
940 976 1.945522 CACATCGTTTGTTCCGGCA 59.054 52.632 0.00 0.00 36.00 5.69
956 992 0.247934 GGCATAAGTTAACCGCGTGC 60.248 55.000 4.92 4.49 0.00 5.34
957 993 0.585519 GCATAAGTTAACCGCGTGCG 60.586 55.000 4.92 7.38 39.44 5.34
1015 1052 3.461773 CCATGTCGAGGCCGAGGT 61.462 66.667 0.00 0.00 46.52 3.85
1119 1156 1.440060 GGTGGTCATCGCGGACATA 59.560 57.895 15.77 3.41 39.59 2.29
1563 1600 3.458579 CGCGTCAACCTCGTGTCG 61.459 66.667 0.00 0.00 34.71 4.35
1635 1672 0.326904 AGGAGATGGAGGCCATGACA 60.327 55.000 5.01 0.00 45.26 3.58
1852 1893 6.146601 TCAGCTCTCTTGATCTGTTCATAG 57.853 41.667 0.00 0.00 37.61 2.23
1961 2005 8.569641 ACTTCTTGCGTTAATTTTGTATGGTAA 58.430 29.630 0.00 0.00 0.00 2.85
1962 2006 9.567848 CTTCTTGCGTTAATTTTGTATGGTAAT 57.432 29.630 0.00 0.00 0.00 1.89
1963 2007 8.903570 TCTTGCGTTAATTTTGTATGGTAATG 57.096 30.769 0.00 0.00 0.00 1.90
1968 2012 9.349145 GCGTTAATTTTGTATGGTAATGTCTTT 57.651 29.630 0.00 0.00 0.00 2.52
1982 2026 7.232534 TGGTAATGTCTTTGGCATTTTACTTCT 59.767 33.333 2.70 0.00 37.65 2.85
2059 2105 8.685427 TCAGAGAAATTGTCAGAAATGTCAAAA 58.315 29.630 0.00 0.00 0.00 2.44
2060 2106 8.749499 CAGAGAAATTGTCAGAAATGTCAAAAC 58.251 33.333 0.00 0.00 0.00 2.43
2062 2108 6.697019 AGAAATTGTCAGAAATGTCAAAACGG 59.303 34.615 0.00 0.00 0.00 4.44
2064 2110 5.568685 TTGTCAGAAATGTCAAAACGGAA 57.431 34.783 0.00 0.00 0.00 4.30
2066 2112 4.201970 TGTCAGAAATGTCAAAACGGAACC 60.202 41.667 0.00 0.00 0.00 3.62
2207 2258 1.149361 CGCTATTGGCCGAACGCTTA 61.149 55.000 13.26 0.00 37.74 3.09
2238 2289 1.618837 CCTCTCAGACCGAACCTTTCA 59.381 52.381 0.00 0.00 0.00 2.69
2262 2313 2.223611 CAGTACGAGCAGTATCCTACGG 59.776 54.545 0.00 0.00 37.69 4.02
2308 2362 7.282675 CGTAACTTCAAGGTCTAGATCTAAGGA 59.717 40.741 16.49 8.57 0.00 3.36
2313 2367 9.898152 CTTCAAGGTCTAGATCTAAGGATTTTT 57.102 33.333 5.79 0.00 31.46 1.94
2337 2393 9.559732 TTTTCACATAGAGAAGAAAGTGATTGA 57.440 29.630 0.00 0.00 36.10 2.57
2402 2459 6.314896 AGAGTTAGAAAGAATCATTGAAGGCG 59.685 38.462 0.00 0.00 0.00 5.52
2443 2500 6.209361 TCGAAGAAGATCAATAATGAGGACG 58.791 40.000 0.00 0.00 39.39 4.79
2447 2504 8.430801 AAGAAGATCAATAATGAGGACGAAAG 57.569 34.615 0.00 0.00 39.39 2.62
2455 2512 0.959553 TGAGGACGAAAGACGAGCTT 59.040 50.000 0.00 0.00 45.77 3.74
2463 2521 5.507650 GGACGAAAGACGAGCTTAAGGATAT 60.508 44.000 4.29 0.00 45.77 1.63
2468 2526 5.303747 AGACGAGCTTAAGGATATGATCG 57.696 43.478 4.29 0.36 45.26 3.69
2481 2539 7.308450 AGGATATGATCGATTGAGGAAGAAA 57.692 36.000 0.00 0.00 0.00 2.52
2485 2543 5.165961 TGATCGATTGAGGAAGAAAACCT 57.834 39.130 0.00 0.00 40.80 3.50
2487 2545 6.003950 TGATCGATTGAGGAAGAAAACCTTT 58.996 36.000 0.00 0.00 37.93 3.11
2513 2571 1.988107 TGAGCTCTCCCAAATCCAACT 59.012 47.619 16.19 0.00 0.00 3.16
2539 2597 0.973632 TCCACAGTCCGCACATAAGT 59.026 50.000 0.00 0.00 0.00 2.24
2547 2605 3.129988 AGTCCGCACATAAGTGGTACTAC 59.870 47.826 0.19 0.19 45.98 2.73
2556 2614 1.436336 GTGGTACTACCGCTCGCAT 59.564 57.895 11.06 0.00 45.06 4.73
2591 2650 0.725686 CAGTGCAATGAAGAGGAGCG 59.274 55.000 8.85 0.00 0.00 5.03
2594 2653 0.737367 TGCAATGAAGAGGAGCGACG 60.737 55.000 0.00 0.00 0.00 5.12
2595 2654 0.737715 GCAATGAAGAGGAGCGACGT 60.738 55.000 0.00 0.00 0.00 4.34
2611 2670 4.509737 GTGCGAGGCGGTAGTCCC 62.510 72.222 0.00 0.00 0.00 4.46
2621 2680 2.753043 GTAGTCCCACCGGAGCGA 60.753 66.667 9.46 0.00 39.51 4.93
2627 2686 0.111832 TCCCACCGGAGCGATACTAT 59.888 55.000 9.46 0.00 32.86 2.12
2675 2755 1.421646 GGTTACAGCTCAGGGGCATAT 59.578 52.381 0.00 0.00 34.17 1.78
2677 2757 2.101640 TACAGCTCAGGGGCATATGA 57.898 50.000 6.97 0.00 34.17 2.15
2696 2776 0.621571 AAGATAGGGCAGGCCAGTGA 60.622 55.000 16.94 0.00 37.98 3.41
2745 2825 2.584608 GCCCAGTGTGAGCGGTAT 59.415 61.111 0.00 0.00 0.00 2.73
2773 2853 1.831343 ATAAGTTGTAGTACCGCGCG 58.169 50.000 25.67 25.67 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.392354 TCAAATTCCTTGCAACATGATCTTC 58.608 36.000 0.00 0.00 34.76 2.87
1 2 6.349243 TCAAATTCCTTGCAACATGATCTT 57.651 33.333 0.00 0.00 34.76 2.40
2 3 5.988310 TCAAATTCCTTGCAACATGATCT 57.012 34.783 0.00 0.00 34.76 2.75
3 4 7.039882 AGATTCAAATTCCTTGCAACATGATC 58.960 34.615 0.00 0.00 34.76 2.92
4 5 6.942976 AGATTCAAATTCCTTGCAACATGAT 58.057 32.000 0.00 0.00 34.76 2.45
5 6 6.349243 AGATTCAAATTCCTTGCAACATGA 57.651 33.333 0.00 0.00 34.76 3.07
7 8 7.230849 TGTAGATTCAAATTCCTTGCAACAT 57.769 32.000 0.00 0.00 34.76 2.71
8 9 6.647334 TGTAGATTCAAATTCCTTGCAACA 57.353 33.333 0.00 0.00 34.76 3.33
9 10 7.945033 TTTGTAGATTCAAATTCCTTGCAAC 57.055 32.000 0.00 0.00 34.76 4.17
10 11 8.954950 TTTTTGTAGATTCAAATTCCTTGCAA 57.045 26.923 0.00 0.00 37.20 4.08
64 65 9.625747 TGCTTACAATTTTAGATGGTCATCATA 57.374 29.630 12.75 1.25 40.22 2.15
65 66 8.523915 TGCTTACAATTTTAGATGGTCATCAT 57.476 30.769 12.75 0.00 40.22 2.45
66 67 7.936496 TGCTTACAATTTTAGATGGTCATCA 57.064 32.000 12.75 0.00 40.22 3.07
67 68 9.638239 TTTTGCTTACAATTTTAGATGGTCATC 57.362 29.630 2.92 2.92 35.21 2.92
68 69 9.995003 TTTTTGCTTACAATTTTAGATGGTCAT 57.005 25.926 0.00 0.00 35.21 3.06
69 70 9.995003 ATTTTTGCTTACAATTTTAGATGGTCA 57.005 25.926 0.00 0.00 35.21 4.02
80 81 9.620259 TCCACCTTTTTATTTTTGCTTACAATT 57.380 25.926 0.00 0.00 35.21 2.32
81 82 9.791801 ATCCACCTTTTTATTTTTGCTTACAAT 57.208 25.926 0.00 0.00 35.21 2.71
82 83 9.620259 AATCCACCTTTTTATTTTTGCTTACAA 57.380 25.926 0.00 0.00 0.00 2.41
83 84 9.620259 AAATCCACCTTTTTATTTTTGCTTACA 57.380 25.926 0.00 0.00 0.00 2.41
84 85 9.877137 CAAATCCACCTTTTTATTTTTGCTTAC 57.123 29.630 0.00 0.00 0.00 2.34
85 86 9.620259 ACAAATCCACCTTTTTATTTTTGCTTA 57.380 25.926 0.00 0.00 0.00 3.09
86 87 8.518430 ACAAATCCACCTTTTTATTTTTGCTT 57.482 26.923 0.00 0.00 0.00 3.91
87 88 8.518430 AACAAATCCACCTTTTTATTTTTGCT 57.482 26.923 0.00 0.00 0.00 3.91
88 89 9.018716 CAAACAAATCCACCTTTTTATTTTTGC 57.981 29.630 0.00 0.00 0.00 3.68
89 90 9.513727 CCAAACAAATCCACCTTTTTATTTTTG 57.486 29.630 0.00 0.00 0.00 2.44
90 91 8.690884 CCCAAACAAATCCACCTTTTTATTTTT 58.309 29.630 0.00 0.00 0.00 1.94
91 92 8.055790 TCCCAAACAAATCCACCTTTTTATTTT 58.944 29.630 0.00 0.00 0.00 1.82
92 93 7.578203 TCCCAAACAAATCCACCTTTTTATTT 58.422 30.769 0.00 0.00 0.00 1.40
93 94 7.142995 TCCCAAACAAATCCACCTTTTTATT 57.857 32.000 0.00 0.00 0.00 1.40
94 95 6.744056 GCTCCCAAACAAATCCACCTTTTTAT 60.744 38.462 0.00 0.00 0.00 1.40
95 96 5.454045 GCTCCCAAACAAATCCACCTTTTTA 60.454 40.000 0.00 0.00 0.00 1.52
96 97 4.685848 GCTCCCAAACAAATCCACCTTTTT 60.686 41.667 0.00 0.00 0.00 1.94
97 98 3.181455 GCTCCCAAACAAATCCACCTTTT 60.181 43.478 0.00 0.00 0.00 2.27
98 99 2.368548 GCTCCCAAACAAATCCACCTTT 59.631 45.455 0.00 0.00 0.00 3.11
99 100 1.970640 GCTCCCAAACAAATCCACCTT 59.029 47.619 0.00 0.00 0.00 3.50
100 101 1.632589 GCTCCCAAACAAATCCACCT 58.367 50.000 0.00 0.00 0.00 4.00
101 102 0.243636 CGCTCCCAAACAAATCCACC 59.756 55.000 0.00 0.00 0.00 4.61
102 103 0.243636 CCGCTCCCAAACAAATCCAC 59.756 55.000 0.00 0.00 0.00 4.02
103 104 0.897863 CCCGCTCCCAAACAAATCCA 60.898 55.000 0.00 0.00 0.00 3.41
104 105 0.610785 TCCCGCTCCCAAACAAATCC 60.611 55.000 0.00 0.00 0.00 3.01
105 106 1.202348 CTTCCCGCTCCCAAACAAATC 59.798 52.381 0.00 0.00 0.00 2.17
106 107 1.203001 TCTTCCCGCTCCCAAACAAAT 60.203 47.619 0.00 0.00 0.00 2.32
107 108 0.183971 TCTTCCCGCTCCCAAACAAA 59.816 50.000 0.00 0.00 0.00 2.83
108 109 0.250727 CTCTTCCCGCTCCCAAACAA 60.251 55.000 0.00 0.00 0.00 2.83
109 110 1.125093 TCTCTTCCCGCTCCCAAACA 61.125 55.000 0.00 0.00 0.00 2.83
110 111 0.391793 CTCTCTTCCCGCTCCCAAAC 60.392 60.000 0.00 0.00 0.00 2.93
111 112 1.553690 CCTCTCTTCCCGCTCCCAAA 61.554 60.000 0.00 0.00 0.00 3.28
112 113 1.990060 CCTCTCTTCCCGCTCCCAA 60.990 63.158 0.00 0.00 0.00 4.12
113 114 2.364317 CCTCTCTTCCCGCTCCCA 60.364 66.667 0.00 0.00 0.00 4.37
114 115 1.265454 TTTCCTCTCTTCCCGCTCCC 61.265 60.000 0.00 0.00 0.00 4.30
115 116 0.613777 TTTTCCTCTCTTCCCGCTCC 59.386 55.000 0.00 0.00 0.00 4.70
116 117 2.351455 CTTTTTCCTCTCTTCCCGCTC 58.649 52.381 0.00 0.00 0.00 5.03
117 118 1.003696 CCTTTTTCCTCTCTTCCCGCT 59.996 52.381 0.00 0.00 0.00 5.52
118 119 1.271434 ACCTTTTTCCTCTCTTCCCGC 60.271 52.381 0.00 0.00 0.00 6.13
119 120 2.814336 CAACCTTTTTCCTCTCTTCCCG 59.186 50.000 0.00 0.00 0.00 5.14
120 121 2.558795 GCAACCTTTTTCCTCTCTTCCC 59.441 50.000 0.00 0.00 0.00 3.97
121 122 3.222603 TGCAACCTTTTTCCTCTCTTCC 58.777 45.455 0.00 0.00 0.00 3.46
122 123 4.802999 CATGCAACCTTTTTCCTCTCTTC 58.197 43.478 0.00 0.00 0.00 2.87
123 124 3.006217 GCATGCAACCTTTTTCCTCTCTT 59.994 43.478 14.21 0.00 0.00 2.85
124 125 2.560105 GCATGCAACCTTTTTCCTCTCT 59.440 45.455 14.21 0.00 0.00 3.10
125 126 2.297033 TGCATGCAACCTTTTTCCTCTC 59.703 45.455 20.30 0.00 0.00 3.20
126 127 2.318908 TGCATGCAACCTTTTTCCTCT 58.681 42.857 20.30 0.00 0.00 3.69
127 128 2.818130 TGCATGCAACCTTTTTCCTC 57.182 45.000 20.30 0.00 0.00 3.71
128 129 3.048337 CATGCATGCAACCTTTTTCCT 57.952 42.857 26.68 0.00 0.00 3.36
141 142 1.170442 TTGTCACCTCAGCATGCATG 58.830 50.000 22.70 22.70 34.76 4.06
142 143 1.816835 CTTTGTCACCTCAGCATGCAT 59.183 47.619 21.98 1.69 34.76 3.96
143 144 1.241165 CTTTGTCACCTCAGCATGCA 58.759 50.000 21.98 0.00 34.76 3.96
144 145 0.109412 GCTTTGTCACCTCAGCATGC 60.109 55.000 10.51 10.51 34.76 4.06
145 146 1.199327 CAGCTTTGTCACCTCAGCATG 59.801 52.381 0.00 0.00 37.54 4.06
146 147 1.072806 TCAGCTTTGTCACCTCAGCAT 59.927 47.619 0.00 0.00 0.00 3.79
147 148 0.469494 TCAGCTTTGTCACCTCAGCA 59.531 50.000 0.00 0.00 0.00 4.41
148 149 0.871057 GTCAGCTTTGTCACCTCAGC 59.129 55.000 0.00 0.00 0.00 4.26
149 150 2.245159 TGTCAGCTTTGTCACCTCAG 57.755 50.000 0.00 0.00 0.00 3.35
150 151 2.936919 ATGTCAGCTTTGTCACCTCA 57.063 45.000 0.00 0.00 0.00 3.86
151 152 3.931578 AGTATGTCAGCTTTGTCACCTC 58.068 45.455 0.00 0.00 0.00 3.85
152 153 4.528596 ACTAGTATGTCAGCTTTGTCACCT 59.471 41.667 0.00 0.00 0.00 4.00
153 154 4.822026 ACTAGTATGTCAGCTTTGTCACC 58.178 43.478 0.00 0.00 0.00 4.02
154 155 6.387465 TGTACTAGTATGTCAGCTTTGTCAC 58.613 40.000 5.75 0.00 0.00 3.67
155 156 6.584185 TGTACTAGTATGTCAGCTTTGTCA 57.416 37.500 5.75 0.00 0.00 3.58
156 157 7.884816 TTTGTACTAGTATGTCAGCTTTGTC 57.115 36.000 5.75 0.00 0.00 3.18
157 158 9.587772 CTATTTGTACTAGTATGTCAGCTTTGT 57.412 33.333 5.75 0.00 0.00 2.83
158 159 9.587772 ACTATTTGTACTAGTATGTCAGCTTTG 57.412 33.333 5.75 0.00 0.00 2.77
159 160 9.587772 CACTATTTGTACTAGTATGTCAGCTTT 57.412 33.333 5.75 0.00 0.00 3.51
160 161 8.198109 CCACTATTTGTACTAGTATGTCAGCTT 58.802 37.037 5.75 0.00 0.00 3.74
161 162 7.201920 CCCACTATTTGTACTAGTATGTCAGCT 60.202 40.741 5.75 0.00 0.00 4.24
162 163 6.924060 CCCACTATTTGTACTAGTATGTCAGC 59.076 42.308 5.75 0.00 0.00 4.26
163 164 8.008513 ACCCACTATTTGTACTAGTATGTCAG 57.991 38.462 5.75 3.39 0.00 3.51
164 165 7.616542 TGACCCACTATTTGTACTAGTATGTCA 59.383 37.037 5.75 14.24 37.00 3.58
165 166 8.004087 TGACCCACTATTTGTACTAGTATGTC 57.996 38.462 5.75 5.05 33.66 3.06
166 167 7.966339 TGACCCACTATTTGTACTAGTATGT 57.034 36.000 5.75 0.00 0.00 2.29
167 168 8.088981 GGATGACCCACTATTTGTACTAGTATG 58.911 40.741 5.75 0.00 34.14 2.39
168 169 8.011290 AGGATGACCCACTATTTGTACTAGTAT 58.989 37.037 5.75 0.00 37.41 2.12
169 170 7.359849 AGGATGACCCACTATTTGTACTAGTA 58.640 38.462 0.00 0.00 37.41 1.82
170 171 6.203072 AGGATGACCCACTATTTGTACTAGT 58.797 40.000 0.00 0.00 37.41 2.57
171 172 6.239345 GGAGGATGACCCACTATTTGTACTAG 60.239 46.154 0.00 0.00 37.41 2.57
172 173 5.601313 GGAGGATGACCCACTATTTGTACTA 59.399 44.000 0.00 0.00 37.41 1.82
173 174 4.409247 GGAGGATGACCCACTATTTGTACT 59.591 45.833 0.00 0.00 37.41 2.73
174 175 4.409247 AGGAGGATGACCCACTATTTGTAC 59.591 45.833 0.00 0.00 37.41 2.90
175 176 4.408921 CAGGAGGATGACCCACTATTTGTA 59.591 45.833 0.00 0.00 37.41 2.41
176 177 3.200825 CAGGAGGATGACCCACTATTTGT 59.799 47.826 0.00 0.00 37.41 2.83
177 178 3.455910 TCAGGAGGATGACCCACTATTTG 59.544 47.826 0.00 0.00 37.41 2.32
178 179 3.456277 GTCAGGAGGATGACCCACTATTT 59.544 47.826 0.00 0.00 43.12 1.40
179 180 3.041946 GTCAGGAGGATGACCCACTATT 58.958 50.000 0.00 0.00 43.12 1.73
180 181 2.683768 GTCAGGAGGATGACCCACTAT 58.316 52.381 0.00 0.00 43.12 2.12
181 182 2.160721 GTCAGGAGGATGACCCACTA 57.839 55.000 0.00 0.00 43.12 2.74
182 183 2.998493 GTCAGGAGGATGACCCACT 58.002 57.895 0.00 0.00 43.12 4.00
188 189 7.616528 TCATTGTAATATGTCAGGAGGATGA 57.383 36.000 0.00 0.00 0.00 2.92
216 217 9.448587 ACTGTATTTCTATAACCCACCTCTAAT 57.551 33.333 0.00 0.00 0.00 1.73
217 218 8.701895 CACTGTATTTCTATAACCCACCTCTAA 58.298 37.037 0.00 0.00 0.00 2.10
218 219 7.201974 GCACTGTATTTCTATAACCCACCTCTA 60.202 40.741 0.00 0.00 0.00 2.43
219 220 6.408206 GCACTGTATTTCTATAACCCACCTCT 60.408 42.308 0.00 0.00 0.00 3.69
220 221 5.758784 GCACTGTATTTCTATAACCCACCTC 59.241 44.000 0.00 0.00 0.00 3.85
221 222 5.428783 AGCACTGTATTTCTATAACCCACCT 59.571 40.000 0.00 0.00 0.00 4.00
222 223 5.681639 AGCACTGTATTTCTATAACCCACC 58.318 41.667 0.00 0.00 0.00 4.61
223 224 9.420551 GTATAGCACTGTATTTCTATAACCCAC 57.579 37.037 0.00 0.00 0.00 4.61
224 225 9.150028 TGTATAGCACTGTATTTCTATAACCCA 57.850 33.333 0.00 0.00 0.00 4.51
225 226 9.991906 TTGTATAGCACTGTATTTCTATAACCC 57.008 33.333 0.00 0.00 0.00 4.11
231 232 9.378551 CACCTTTTGTATAGCACTGTATTTCTA 57.621 33.333 0.00 0.00 0.00 2.10
232 233 7.336931 CCACCTTTTGTATAGCACTGTATTTCT 59.663 37.037 0.00 0.00 0.00 2.52
233 234 7.415206 CCCACCTTTTGTATAGCACTGTATTTC 60.415 40.741 0.00 0.00 0.00 2.17
234 235 6.377146 CCCACCTTTTGTATAGCACTGTATTT 59.623 38.462 0.00 0.00 0.00 1.40
235 236 5.885912 CCCACCTTTTGTATAGCACTGTATT 59.114 40.000 0.00 0.00 0.00 1.89
236 237 5.437060 CCCACCTTTTGTATAGCACTGTAT 58.563 41.667 0.00 0.00 0.00 2.29
237 238 4.839121 CCCACCTTTTGTATAGCACTGTA 58.161 43.478 0.00 0.00 0.00 2.74
238 239 3.686016 CCCACCTTTTGTATAGCACTGT 58.314 45.455 0.00 0.00 0.00 3.55
239 240 2.423538 GCCCACCTTTTGTATAGCACTG 59.576 50.000 0.00 0.00 0.00 3.66
240 241 2.620627 GGCCCACCTTTTGTATAGCACT 60.621 50.000 0.00 0.00 0.00 4.40
241 242 1.749063 GGCCCACCTTTTGTATAGCAC 59.251 52.381 0.00 0.00 0.00 4.40
242 243 1.356059 TGGCCCACCTTTTGTATAGCA 59.644 47.619 0.00 0.00 36.63 3.49
243 244 1.749063 GTGGCCCACCTTTTGTATAGC 59.251 52.381 1.17 0.00 36.63 2.97
244 245 2.014128 CGTGGCCCACCTTTTGTATAG 58.986 52.381 8.62 0.00 36.63 1.31
245 246 1.629353 TCGTGGCCCACCTTTTGTATA 59.371 47.619 8.62 0.00 36.63 1.47
246 247 0.402504 TCGTGGCCCACCTTTTGTAT 59.597 50.000 8.62 0.00 36.63 2.29
247 248 0.535553 GTCGTGGCCCACCTTTTGTA 60.536 55.000 8.62 0.00 36.63 2.41
248 249 1.826487 GTCGTGGCCCACCTTTTGT 60.826 57.895 8.62 0.00 36.63 2.83
249 250 2.903547 CGTCGTGGCCCACCTTTTG 61.904 63.158 8.62 0.00 36.63 2.44
250 251 2.593436 CGTCGTGGCCCACCTTTT 60.593 61.111 8.62 0.00 36.63 2.27
251 252 3.552384 TCGTCGTGGCCCACCTTT 61.552 61.111 8.62 0.00 36.63 3.11
252 253 4.309950 GTCGTCGTGGCCCACCTT 62.310 66.667 8.62 0.00 36.63 3.50
260 261 2.774951 GATTCGTGCGTCGTCGTGG 61.775 63.158 3.66 0.00 40.80 4.94
261 262 2.681666 GATTCGTGCGTCGTCGTG 59.318 61.111 3.66 0.00 40.80 4.35
262 263 2.868331 CGATTCGTGCGTCGTCGT 60.868 61.111 3.66 0.00 40.80 4.34
263 264 4.234340 GCGATTCGTGCGTCGTCG 62.234 66.667 8.03 0.00 39.73 5.12
264 265 2.205595 TTTGCGATTCGTGCGTCGTC 62.206 55.000 8.03 1.34 39.87 4.20
265 266 2.304401 TTTGCGATTCGTGCGTCGT 61.304 52.632 8.03 0.00 39.87 4.34
266 267 1.853192 GTTTGCGATTCGTGCGTCG 60.853 57.895 8.03 1.19 40.62 5.12
267 268 1.509162 GGTTTGCGATTCGTGCGTC 60.509 57.895 8.03 0.00 34.24 5.19
268 269 2.554272 GGTTTGCGATTCGTGCGT 59.446 55.556 8.03 0.00 34.24 5.24
269 270 2.202298 GGGTTTGCGATTCGTGCG 60.202 61.111 8.03 0.00 34.24 5.34
270 271 1.154225 CTGGGTTTGCGATTCGTGC 60.154 57.895 8.03 0.00 0.00 5.34
271 272 1.154225 GCTGGGTTTGCGATTCGTG 60.154 57.895 8.03 0.00 0.00 4.35
272 273 3.263941 GCTGGGTTTGCGATTCGT 58.736 55.556 8.03 0.00 0.00 3.85
279 280 4.700365 GCCGTTCGCTGGGTTTGC 62.700 66.667 0.00 0.00 0.00 3.68
280 281 4.383602 CGCCGTTCGCTGGGTTTG 62.384 66.667 0.00 0.00 34.21 2.93
301 302 1.078708 AGGGATGTACCGGCAAACG 60.079 57.895 0.00 0.00 43.80 3.60
302 303 0.035820 TCAGGGATGTACCGGCAAAC 60.036 55.000 0.00 0.00 40.11 2.93
303 304 0.693622 TTCAGGGATGTACCGGCAAA 59.306 50.000 0.00 0.00 40.11 3.68
304 305 0.035820 GTTCAGGGATGTACCGGCAA 60.036 55.000 0.00 0.00 40.11 4.52
305 306 1.600107 GTTCAGGGATGTACCGGCA 59.400 57.895 0.00 0.00 40.11 5.69
306 307 1.153229 GGTTCAGGGATGTACCGGC 60.153 63.158 0.00 0.00 40.11 6.13
307 308 1.143183 CGGTTCAGGGATGTACCGG 59.857 63.158 15.91 0.00 45.04 5.28
308 309 4.827481 CGGTTCAGGGATGTACCG 57.173 61.111 11.19 11.19 43.92 4.02
309 310 1.488390 TACCGGTTCAGGGATGTACC 58.512 55.000 15.04 0.00 35.02 3.34
310 311 3.615224 TTTACCGGTTCAGGGATGTAC 57.385 47.619 15.04 0.00 35.02 2.90
311 312 3.327172 TGTTTTACCGGTTCAGGGATGTA 59.673 43.478 15.04 0.00 35.02 2.29
312 313 2.106857 TGTTTTACCGGTTCAGGGATGT 59.893 45.455 15.04 0.00 35.02 3.06
313 314 2.747446 CTGTTTTACCGGTTCAGGGATG 59.253 50.000 15.04 0.00 35.02 3.51
314 315 2.640826 TCTGTTTTACCGGTTCAGGGAT 59.359 45.455 15.04 0.00 35.02 3.85
315 316 2.048601 TCTGTTTTACCGGTTCAGGGA 58.951 47.619 15.04 1.78 35.02 4.20
316 317 2.148768 GTCTGTTTTACCGGTTCAGGG 58.851 52.381 15.04 0.00 35.02 4.45
317 318 3.121738 AGTCTGTTTTACCGGTTCAGG 57.878 47.619 15.04 0.00 37.30 3.86
318 319 4.788521 GCAAAGTCTGTTTTACCGGTTCAG 60.789 45.833 15.04 16.35 0.00 3.02
319 320 3.065648 GCAAAGTCTGTTTTACCGGTTCA 59.934 43.478 15.04 6.85 0.00 3.18
320 321 3.624900 GCAAAGTCTGTTTTACCGGTTC 58.375 45.455 15.04 1.79 0.00 3.62
321 322 2.032426 CGCAAAGTCTGTTTTACCGGTT 59.968 45.455 15.04 0.00 0.00 4.44
322 323 1.600485 CGCAAAGTCTGTTTTACCGGT 59.400 47.619 13.98 13.98 0.00 5.28
323 324 1.662026 GCGCAAAGTCTGTTTTACCGG 60.662 52.381 0.30 0.00 0.00 5.28
324 325 1.670326 GCGCAAAGTCTGTTTTACCG 58.330 50.000 0.30 0.00 0.00 4.02
325 326 1.670326 CGCGCAAAGTCTGTTTTACC 58.330 50.000 8.75 0.00 0.00 2.85
326 327 1.042475 GCGCGCAAAGTCTGTTTTAC 58.958 50.000 29.10 0.00 0.00 2.01
327 328 0.941542 AGCGCGCAAAGTCTGTTTTA 59.058 45.000 35.10 0.00 0.00 1.52
328 329 0.592247 CAGCGCGCAAAGTCTGTTTT 60.592 50.000 35.10 4.19 0.00 2.43
329 330 1.009675 CAGCGCGCAAAGTCTGTTT 60.010 52.632 35.10 4.83 0.00 2.83
330 331 2.633657 CAGCGCGCAAAGTCTGTT 59.366 55.556 35.10 5.73 0.00 3.16
331 332 3.349006 CCAGCGCGCAAAGTCTGT 61.349 61.111 35.10 6.63 0.00 3.41
332 333 4.748679 GCCAGCGCGCAAAGTCTG 62.749 66.667 35.10 21.06 0.00 3.51
334 335 4.107051 ATGCCAGCGCGCAAAGTC 62.107 61.111 35.10 17.03 43.24 3.01
335 336 4.409218 CATGCCAGCGCGCAAAGT 62.409 61.111 35.10 9.85 43.24 2.66
336 337 3.902162 AACATGCCAGCGCGCAAAG 62.902 57.895 35.10 21.72 43.24 2.77
337 338 3.895102 GAACATGCCAGCGCGCAAA 62.895 57.895 35.10 15.78 43.24 3.68
338 339 4.403137 GAACATGCCAGCGCGCAA 62.403 61.111 35.10 16.19 43.24 4.85
342 343 2.639327 AAAGGGAACATGCCAGCGC 61.639 57.895 0.00 0.00 0.00 5.92
343 344 1.213537 CAAAGGGAACATGCCAGCG 59.786 57.895 0.00 0.00 0.00 5.18
344 345 1.079612 GCAAAGGGAACATGCCAGC 60.080 57.895 0.00 0.00 38.91 4.85
348 349 2.252976 TTTTGGCAAAGGGAACATGC 57.747 45.000 13.04 0.00 42.62 4.06
349 350 5.179182 GTGTTATTTTGGCAAAGGGAACATG 59.821 40.000 25.57 0.00 31.10 3.21
350 351 5.304778 GTGTTATTTTGGCAAAGGGAACAT 58.695 37.500 25.57 14.93 31.10 2.71
396 397 4.201685 GCATACGCGTTGTTGTTCTAGAAT 60.202 41.667 20.78 0.00 0.00 2.40
417 418 2.184322 GCGACCCATCTTCGAGCA 59.816 61.111 0.00 0.00 38.85 4.26
421 422 1.328680 CAAATCTGCGACCCATCTTCG 59.671 52.381 0.00 0.00 39.56 3.79
434 435 3.564644 GGATCTGATGGTCTGCAAATCTG 59.435 47.826 0.00 0.00 0.00 2.90
435 436 3.201487 TGGATCTGATGGTCTGCAAATCT 59.799 43.478 0.00 0.00 0.00 2.40
436 437 3.548770 TGGATCTGATGGTCTGCAAATC 58.451 45.455 0.00 0.00 0.00 2.17
437 438 3.657398 TGGATCTGATGGTCTGCAAAT 57.343 42.857 0.00 0.00 0.00 2.32
438 439 3.084039 GTTGGATCTGATGGTCTGCAAA 58.916 45.455 0.00 0.00 0.00 3.68
439 440 2.306805 AGTTGGATCTGATGGTCTGCAA 59.693 45.455 0.00 0.00 0.00 4.08
440 441 1.911357 AGTTGGATCTGATGGTCTGCA 59.089 47.619 0.00 0.00 0.00 4.41
462 463 6.973642 TGGATGGAGGAGAAAAACAATCTAT 58.026 36.000 0.00 0.00 0.00 1.98
463 464 6.387192 TGGATGGAGGAGAAAAACAATCTA 57.613 37.500 0.00 0.00 0.00 1.98
464 465 5.261040 TGGATGGAGGAGAAAAACAATCT 57.739 39.130 0.00 0.00 0.00 2.40
465 466 5.890419 AGATGGATGGAGGAGAAAAACAATC 59.110 40.000 0.00 0.00 0.00 2.67
466 467 5.835582 AGATGGATGGAGGAGAAAAACAAT 58.164 37.500 0.00 0.00 0.00 2.71
467 468 5.261040 AGATGGATGGAGGAGAAAAACAA 57.739 39.130 0.00 0.00 0.00 2.83
468 469 4.934797 AGATGGATGGAGGAGAAAAACA 57.065 40.909 0.00 0.00 0.00 2.83
469 470 5.256474 TCAAGATGGATGGAGGAGAAAAAC 58.744 41.667 0.00 0.00 0.00 2.43
470 471 5.519183 TCAAGATGGATGGAGGAGAAAAA 57.481 39.130 0.00 0.00 0.00 1.94
471 472 5.192321 TGATCAAGATGGATGGAGGAGAAAA 59.808 40.000 0.00 0.00 0.00 2.29
475 476 3.647113 AGTGATCAAGATGGATGGAGGAG 59.353 47.826 0.00 0.00 0.00 3.69
499 500 9.526713 TGTTTGTTTGTTTGATAGTACGTAGTA 57.473 29.630 12.39 12.39 45.11 1.82
501 502 9.313323 CATGTTTGTTTGTTTGATAGTACGTAG 57.687 33.333 0.00 0.00 0.00 3.51
502 503 8.828644 ACATGTTTGTTTGTTTGATAGTACGTA 58.171 29.630 0.00 0.00 29.55 3.57
503 504 7.699566 ACATGTTTGTTTGTTTGATAGTACGT 58.300 30.769 0.00 0.00 29.55 3.57
504 505 8.468349 CAACATGTTTGTTTGTTTGATAGTACG 58.532 33.333 8.77 0.00 43.57 3.67
505 506 8.751335 CCAACATGTTTGTTTGTTTGATAGTAC 58.249 33.333 8.77 0.00 43.57 2.73
506 507 8.470805 ACCAACATGTTTGTTTGTTTGATAGTA 58.529 29.630 8.77 0.00 43.57 1.82
507 508 7.327214 ACCAACATGTTTGTTTGTTTGATAGT 58.673 30.769 8.77 0.00 43.57 2.12
508 509 7.769272 ACCAACATGTTTGTTTGTTTGATAG 57.231 32.000 8.77 0.00 43.57 2.08
509 510 9.823647 ATAACCAACATGTTTGTTTGTTTGATA 57.176 25.926 27.13 11.63 44.72 2.15
546 547 4.449743 ACATACACACAACATTACACCGTC 59.550 41.667 0.00 0.00 0.00 4.79
547 548 4.212425 CACATACACACAACATTACACCGT 59.788 41.667 0.00 0.00 0.00 4.83
549 550 4.023622 TGCACATACACACAACATTACACC 60.024 41.667 0.00 0.00 0.00 4.16
558 562 3.274288 TGTCAAGTGCACATACACACAA 58.726 40.909 21.04 0.00 43.23 3.33
563 567 1.271325 CCCCTGTCAAGTGCACATACA 60.271 52.381 21.04 17.59 0.00 2.29
591 599 1.737816 CCATGTTAGGCTGGCATGC 59.262 57.895 20.52 9.90 38.79 4.06
607 615 3.691342 CGGACACCTTCCTCGCCA 61.691 66.667 0.00 0.00 43.25 5.69
632 640 4.615834 CGAGGGCTAGCTCGACGC 62.616 72.222 18.66 5.31 44.85 5.19
636 644 2.196925 ATGGTCGAGGGCTAGCTCG 61.197 63.158 17.66 17.66 43.59 5.03
637 645 1.365633 CATGGTCGAGGGCTAGCTC 59.634 63.158 15.72 11.51 0.00 4.09
638 646 2.136878 CCATGGTCGAGGGCTAGCT 61.137 63.158 15.72 0.00 0.00 3.32
639 647 2.423446 CCATGGTCGAGGGCTAGC 59.577 66.667 6.04 6.04 0.00 3.42
722 730 3.920231 TGTGATGAAATGGAGGAGGAG 57.080 47.619 0.00 0.00 0.00 3.69
741 749 5.016985 GCGATTTGCATGCACTAAATTTTG 58.983 37.500 22.58 12.21 45.45 2.44
774 782 2.182827 TCCAGAGAAGCAGCTGTACAT 58.817 47.619 16.64 0.00 0.00 2.29
781 805 0.107800 TGCTGATCCAGAGAAGCAGC 60.108 55.000 6.43 6.43 46.52 5.25
824 848 3.423123 GCAACCGCGTCAGCATTATATAC 60.423 47.826 4.92 0.00 45.49 1.47
854 878 8.259411 TGTTTATATAGGGCTTCGTTTACTTCA 58.741 33.333 0.00 0.00 0.00 3.02
883 917 2.746412 TTCACCATCTGTGCCGTGGG 62.746 60.000 0.00 0.00 45.03 4.61
901 935 3.509575 TGCTGTGGAGAAGTGTTGTTTTT 59.490 39.130 0.00 0.00 0.00 1.94
912 946 1.872952 CAAACGATGTGCTGTGGAGAA 59.127 47.619 0.00 0.00 0.00 2.87
928 964 4.478699 GGTTAACTTATGCCGGAACAAAC 58.521 43.478 5.05 0.00 0.00 2.93
931 967 2.348660 CGGTTAACTTATGCCGGAACA 58.651 47.619 5.05 0.00 40.45 3.18
932 968 1.063027 GCGGTTAACTTATGCCGGAAC 59.937 52.381 5.05 0.00 43.90 3.62
962 999 3.289834 CCTGCACAGCACCACACC 61.290 66.667 0.00 0.00 33.79 4.16
1015 1052 4.966787 GGCCACCTTGCCGTCCAA 62.967 66.667 0.00 0.00 42.54 3.53
1470 1507 2.050168 TTGGACGCCGTGTACGAC 60.050 61.111 5.91 0.00 43.02 4.34
1473 1510 2.356553 TGCTTGGACGCCGTGTAC 60.357 61.111 0.00 0.00 0.00 2.90
1611 1648 2.841988 GCCTCCATCTCCTCGGCT 60.842 66.667 0.00 0.00 37.76 5.52
1635 1672 3.560251 AGCACGTTGTGGGCCTCT 61.560 61.111 4.53 0.00 33.64 3.69
1791 1828 1.363807 CGCAGATCACAGCCCGATA 59.636 57.895 0.00 0.00 0.00 2.92
1961 2005 8.962884 AAAAAGAAGTAAAATGCCAAAGACAT 57.037 26.923 0.00 0.00 0.00 3.06
2059 2105 0.408700 ACTCCCACTCTAGGTTCCGT 59.591 55.000 0.00 0.00 0.00 4.69
2060 2106 0.818296 CACTCCCACTCTAGGTTCCG 59.182 60.000 0.00 0.00 0.00 4.30
2062 2108 1.066787 GTGCACTCCCACTCTAGGTTC 60.067 57.143 10.32 0.00 33.02 3.62
2064 2110 1.251527 CGTGCACTCCCACTCTAGGT 61.252 60.000 16.19 0.00 33.60 3.08
2066 2112 0.888619 TTCGTGCACTCCCACTCTAG 59.111 55.000 16.19 0.00 33.60 2.43
2123 2174 6.860023 CAGGCTTGTTCACTGAATAAAAGAAG 59.140 38.462 12.55 0.00 34.21 2.85
2176 2227 3.713288 GCCAATAGCGACGGCATATATA 58.287 45.455 4.45 0.00 45.52 0.86
2177 2228 2.550978 GCCAATAGCGACGGCATATAT 58.449 47.619 4.45 0.00 45.52 0.86
2207 2258 0.178921 TCTGAGAGGTGCCCAGACTT 60.179 55.000 0.00 0.00 32.57 3.01
2313 2367 9.159364 CATCAATCACTTTCTTCTCTATGTGAA 57.841 33.333 0.00 0.00 37.85 3.18
2402 2459 6.467723 TCTTCGAGTTTGCTATCTTTCAAC 57.532 37.500 0.00 0.00 0.00 3.18
2443 2500 6.306837 CGATCATATCCTTAAGCTCGTCTTTC 59.693 42.308 0.00 0.00 36.25 2.62
2447 2504 5.298197 TCGATCATATCCTTAAGCTCGTC 57.702 43.478 0.00 0.00 0.00 4.20
2455 2512 8.422577 TTCTTCCTCAATCGATCATATCCTTA 57.577 34.615 0.00 0.00 0.00 2.69
2463 2521 5.165961 AGGTTTTCTTCCTCAATCGATCA 57.834 39.130 0.00 0.00 0.00 2.92
2487 2545 5.579047 TGGATTTGGGAGAGCTCATAAAAA 58.421 37.500 17.77 11.30 0.00 1.94
2494 2552 2.290577 ACAGTTGGATTTGGGAGAGCTC 60.291 50.000 5.27 5.27 0.00 4.09
2495 2553 1.707427 ACAGTTGGATTTGGGAGAGCT 59.293 47.619 0.00 0.00 0.00 4.09
2500 2558 6.126409 GTGGATATAACAGTTGGATTTGGGA 58.874 40.000 0.00 0.00 0.00 4.37
2513 2571 2.498078 TGTGCGGACTGTGGATATAACA 59.502 45.455 8.99 0.00 0.00 2.41
2539 2597 1.435925 CATGCGAGCGGTAGTACCA 59.564 57.895 19.41 0.00 38.47 3.25
2547 2605 2.890474 GGTACACCATGCGAGCGG 60.890 66.667 0.00 0.00 35.64 5.52
2569 2628 2.434428 CTCCTCTTCATTGCACTGCTT 58.566 47.619 1.98 0.00 0.00 3.91
2591 2650 4.112341 ACTACCGCCTCGCACGTC 62.112 66.667 0.00 0.00 0.00 4.34
2594 2653 4.509737 GGGACTACCGCCTCGCAC 62.510 72.222 0.00 0.00 36.97 5.34
2611 2670 1.880675 AGTGATAGTATCGCTCCGGTG 59.119 52.381 18.56 0.00 46.52 4.94
2621 2680 2.818432 CCGTTAGGGCGAGTGATAGTAT 59.182 50.000 0.00 0.00 0.00 2.12
2627 2686 0.322816 AGTACCGTTAGGGCGAGTGA 60.323 55.000 0.00 0.00 43.47 3.41
2651 2731 0.400213 CCCCTGAGCTGTAACCACAA 59.600 55.000 0.00 0.00 33.22 3.33
2675 2755 0.621571 ACTGGCCTGCCCTATCTTCA 60.622 55.000 9.95 0.00 34.56 3.02
2677 2757 0.621571 TCACTGGCCTGCCCTATCTT 60.622 55.000 9.95 0.00 34.56 2.40
2696 2776 1.147376 TTGCGGTACTGCCACACTT 59.853 52.632 23.70 0.00 36.97 3.16
2745 2825 6.101332 CGGTACTACAACTTATAAGTGGCAA 58.899 40.000 18.70 7.11 39.66 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.