>input_sequence_68364
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----------------------------------------------------------------------------ATGT
CGAGGCCGAGGTTGGACGGCAAGGTGGCCATCGTGACGGGCGGCGCGAGCGGCATCGGCGAGGCGGCCGCGCGGCTCTTC
GCGGCCAGCGGCGCCACGGTGGTCATCGCGGACATACAGGACGCGCTGGGCGAGGCGGTCGCGGCCTCCATCGCGGAGTC
CGGCGCGTGCTGCACGTACGCGCGGTGCGACGTGACGGACGAGGCCCAGGTGGAGGCCACGGTGGCGGCGGCCGTCGCGG
CGCACGGCCGGCTCGACGTCATGCTCAGCAACGCCGGCGTGCTGCTCCCGACGGGCCCCGTCACGGACATGGACCTGTCC
GCGCTGGACCGCGTCATGGCCGTCAACTTCCGGGGCGCCGCAGCGTGCGTCAAGCACGCGGCCCGCGCCATGGTGGCGGC
CGGCGTCCGGGGCGCCATCGTGTGCACGGGGAGCGTGGCGTGCGTGCAGGGCGGGTTCGGCCCGGCGTCGTACACGGCGT
CCAAGCACGCGCTGCTGGGCCTGGTGCGCGCCGCGGCGGGCGAGCTCGGGCGGCACGGCGTGCGCGTCAACCTCGTGTCG
CCCGGCGGAGTGGCGACGCCGCTCAGCTGCGCCGTGGTGGGCGTGGGAGCCGAGGAGATGGAGGCCATGACAGAGGCCCA
CAACGTGCTGCGCGGGAAGGTGCTGCGCGCGGCCGACGTGGCGGAAGCGGCGCTGTTCCTCGCGTCCGACCAGGCCGGCT
TCATCAGCGGCCACAACCTCGTCGTCGACGGCGCCACCACCGCCGTGAACCCCGCCGTGCTGCGCTCTATCGGGCTGTGA
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>chr4A_1_TraesCS4A01G361000
GAAGATCATGTTGCAAGGAATTTGAATCTACAAAAAAATTCTATAATGAAATTTTAATGTGAAATATGATGACCATCTAA
AATTGTAAGCAAAAATAAAAAGGTGGATTTGTTTGGGAGCGGGAAGAGAGGAAAAAGGTTGCATGCATGCTGAGGTGACA
AAGCTGACATACTAGTACAAATAGTGGGTCATCCTCCTGACATATTACAATGATATATTAGAGGTGGGTTATAGAAATAC
AGTGCTATACAAAAGGTGGGCCACGACGACGCACGAATCGCAAACCCAGCGAACGGCGGATCGTTTGCCGGTACATCCCT
GAACCGGTAAAACAGACTTTGCGCGCTGGCATGTTCCCTTTGCCAAAATAACACCCTGGTTCTTTCCACCAACTTCATTC
TAGAACAACAACGCGTATGCTCGAAGATGGGTCGCAGATTTGCAGACCATCAGATCCAACTCATAGATTGTTTTTCTCCT
CCATCCATCTTGATCACTATACTACGTACTATCAAACAAACAAACATGTTGGTTATATTGCGTAATGACGG---TGTAAT
GTTGTGTGTATGTGCACTTGACAGGGGCGA----GCAGGCATGCCAGCCTAACATGGCGAGGAAGGTGTCCGCCTGCCTG
CGTCGAGCTAGCCCTCGACCATGGCCACGTGCTCCCCGTCGCCCGCTGTTCCTCCCTGTCGCCCGCCTGCCCGCCTCCAC
AGATTCTTCCTCCTCCTCCATTTCATCACAAAATTTAGTGCATGCAAATCGCAAACGTAGGAT----------------G
TACAGCTGCTTCTCTGGATCAGCATTGCTTATATTACCCTGATTATAGTATATAATGCTGACGCGGTTGCATTTGTTTG-
---------AAGTAAACGAAGCCCTATATAAACACACCCACGGCACAGATGGTGAAAAACAACACT--TCTCCACAGCAC
ATCGTTTGTTCCGGCATAAGTTAACCGCGTGCGG-TGCGGTGTGGTGCTGTGCAGGGCGGAGCAGTCGGCGTCACCATGT
CGAGGCCGAGGTTGGACGGCAAGGTGGCCATCGTGACGGGCGGCGCGAGCGGCATCGGCGAGGCGGCCGCGCGGCTCTTC
GCGGCCAGCGGCGCCACGGTGGTCATCGCGGACATACAGGACGCGCTGGGCGAGGCGGTCGCGGCCTCCATCGCGGAGTC
CGGCGCGTGCTGCACGTACGCGCGGTGCGACGTGACGGACGAGGCCCAGGTGGAGGCCACGGTGGCGGCGGCCGTCGCGG
CGCACGGCCGGCTCGACGTCATGCTCAGCAACGCCGGCGTGCTGCTCCCGACGGGCCCCGTCACGGACATGGACCTGTCC
GCGCTGGACCGCGTCATGGCCGTCAACTTCCGGGGCGCCGCAGCGTGCGTCAAGCACGCGGCCCGCGCCATGGTGGCGGC
CGGCGTCCGGGGCGCCATCGTGTGCACGGGGAGCGTGGCGTGCGTGCAGGGCGGGTTCGGCCCGGCGTCGTACACGGCGT
CCAAGCACGCGCTGCTGGGCCTGGTGCGCGCCGCGGCGGGCGAGCTCGGGCGGCACGGCGTGCGCGTCAACCTCGTGTCG
CCCGGCGGAGTGGCGACGCCGCTCAGCTGCGCCGTGGTGGGCGTGGGAGCCGAGGAGATGGAGGCCATGACAGAGGCCCA
CAACGTGCTGCGCGGGAAGGTGCTGCGCGCGGCCGACGTGGCGGAAGCGGCGCTGTTCCTCGCGTCCGACCAGGCCGGCT
TCATCAGCGGCCACAACCTCGTCGTCGACGGCGCCACCACCGCCGTGAACCCCGCCGTGCTGCGCTCTATCGGGCTGTGA
TCTGCGCCGCACGTCCATCGTCTCAT----CAGCTCTCTTGATCTGTTCATAGTA---CTACAGCTACAGCAGCAGTTAA
TATTAGTAATGTGATTCCTTGAAAAATATATAAATGTTGTGACATGATGAGAATTAATACTTCTTGCGTTAATTTTGTAT
GGTAATGTCTTTGGCATTTTACTTCTTTTTTT--TTGAGAAATCTTCGGCATTTTACTAAGCTGCACTGGATGGAGTGTC
AGAGAAATTGTCAGAAATGTCAAAACGGAACC-----TAGAGTGGGAGTGCACGAAGTCGCACGTCTGAAAACGAACAGC
AGCTGGCAGACCACTTCTTTTATTCAGTGAACAAGCCTGTCGAAAAGCTTGGCTTATCTATTAATCTATATATGCCGTCG
CTATTGGCCGAACGCTTAAGTCTGGGCACCTCTCAGACCGAACCTTTCAATCAGTACGAGCAGTATCCTACGGCTAACGA
TTTCGTTCGGTACG---TAACTTCAAGGTCTAGATCTAAGGATTTTT--TCACATAGAGAAGAAAGTGATTGATGAAAAT
GTAGAGTTAGATC-TTTTTTTTATTTTCTCTCAAGAGTTAGAAAGAATCATTGAAGGCGTTGAAAGATAGCAAACTCGAA
GAAGATCAATAATGAGGACGAAAGACGAGCTT-AAGGATATGATCGATTGAGGAAGAAAACCTTTTTTTATGAGCTCTCC
CAAATCCAACTGTTATATCCACAGTCCGCACATAAGTGGTACTACCGCTCGCATGGT-GTACCCACAAAGCAGTGCAATG
AAGAGGAGCGACGTGCGAGGCGGTAGTCCCACCGGAGCGATACTATCACTCGC---------------------CCTAAC
GGTACTACCGTTGTGGTTACAGCTCAGGGGCATATGAAGATAGGGCAGGCCAGTGAAGTGTGGCAGTACCGCAACAGCGG
TACTACCGCCCAGTGTGAGCGGTATTGCCACTTATAAGTTGTAGTACCGCGCGCCCACTGCCGCCCTACAACCGCTGAGA
GCG
>chr5D_344
CGCTGGCT------------------------------------------------------------------------
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-------------------------------TGTTCCCTTTGCCAAAATAACACCCTGGTTCTTTCCACCAACTTCTTTC
TAGAACAACAACGCGTACGCTGGAAGATGGATC--------GCAGACCATCAGATCCAACTCTAGATC----TTTTTCCT
CCATCC------------------------ATCAAACAAACAAACATGTTGAATATATTGGGTAATACCAGTGATGTAAT
GGTGTGCGTATGTGCACTTGACAGGGGCGA----GCA----TGCCAGCCTAACAAAGCGATGAAGGTCCCTGCCTGCCTC
C--------AGCCCTCGACCATGGCCACGTGCTTCCCGTCGCCCGCTGTTCCTCCCTGTCGCCTGCCTGCCCGCCTCCAC
AGATTCTTCTTCCTCCTGCATTTCATCAGAAAATTTAGTGCATGCAAATCGCAAAACGTACGTAGGGTAGGCAGTACAAG
TACAACTGCTTCTCTGGATCAGCATTGCTTATATTACCCTGATTA---TATATAATGCTGACGCGGTTGCATTTGCTCG-
---------AAGTAAACGAAGCCCTATATAAACACATCCACAGCACAGATGGTGCAAAACAACACACATCTCCACAGCAC
ATCATTCTTTCCGGCCTAAGTTAACCGCGTGGAGTTGCAGCGCGGTGCTGTGCAGGACAGATCAGTCGGCATCACCATGT
CGAGGCCGAGGCTGGACGGCAAGGTGGCCATCGTCACGGGCGGCGCGAGCGGCATCGGCGAGGCGGCGGCGCGGCTCTTC
GCGGCCAGCGGCGCCACGGTGGTCATCGCCGACATCCAGGACGCGCTGGGCGAGGCGGTGGCGGCCTCCATCGCGGAGTC
CGGCGCGTGCTGCACGTACGCGCGGTGCGACGTGACGGACGAGGCCCAGGTGGAGGCGACGGTGGCGGCGGCCGTGGCGG
CACACGGCCGCCTCGACGTCATGCTCAGCAACGCCGGCGTGCTGCTCCCGACGGGCCCCGTCACGGAGATGGACCTGTCC
GCGCTCGACCGCGTCATGGCCGTCAACTTCCGGGGCGCGGCGGCGTGCGTCAAGCACGCGGCGCGGGCCATGGTGGCGGC
CGGCGTCCGGGGCGCCATCGTGTGCACGGGGAGCGTGGCGTGCGTGCAGGGCGGGTTCGGCCCGGCCTCCTACACGGCGT
CCAAGCACGCGCTGCTGGGCCTGGTGCGCGCCGCGGCGGGCGAGCTCGGGCGGCACGGCGTGCGCGTCAACCTCGTGTCC
CCCGGCGGCGTGGCCACGCCGCTCAGCTGCGCGGTGGTGGGCGTGGGCGCCGAGGAGATGGAGGCCATGACGGAGGCCCA
CAACGTGCTGCGCGGGAAGGTGCTGCGCGCGGCCGACGTGGCGGAGGCGGCGCTGTTCCTCGCGTCTGACCAGGCGGGCT
TCATCAGCGGCCACAACCTCGTCGTCGACGGCGCCACCACCGCCGTCAACCCCGCCGTGCTGCGCTCCATCGGGCTGTGA
TCTGCGCCGCACGTCCATCGTCTCATGCATCAGCTCTCTTGATCTGTTCATACTACAGCTACAGCTACAGCAGCAGTTAA
TATTAGTAATGTGATTCCTTGAAAAATATATAAATGTTGTGACATGATGAGAATTAATACTTCTTGCGTTAATTTTGTAT
GGTATA-TCTTCGGCATTTTACTTC-TTCTTTTCTTGAGGAATCTTCGGCATTTTACTAAGCTGCACTGGATGGAGTGTC
AGGGAAATTGTCAGAAATGTCAAAGGGAACCTAGAGTTAGAGTGGGAGTGCACGAAGTCGCACGTCTGAAAATGAACAGC
AGCTGGCAGACCAGTTCTTTTATTCAGTGAACAAGCCTGTCGAAAAGCTTGGCTTATCTATTAATC--TATATGCCGTCG
CTATTGGCCGAACGCTTCAGTCCGGGCACCTCTCAGACCGAACCTTTCGATCAGTACGAGCAGTATCCTACGACTAACGA
TTTCCTTCGGTACG-ACTAACTTCAAGGTCTAGATCTAAAGGTTTTC--TGACATGCAGAAGAAAGTGATAGGTGAAAAT
GTAGAGCTAGATCTTTTTTTTTATTTTCTCTCAAGAGTTAGAAAGAATCATTAGAGGCATTGAAAGATAGCAAACTCGAA
GAAGATCAATAATGAAGACAAAACACGAGCTC-AAGGATAAGATCCATTGAGGAAGAAGACCCTCTTTTATAGGCTCCCC
CAAATCCAACCGTTATATCCACAGTCCGCACATAAGCGGTACTATCGCTCGGACGGT-GTACCCACAGAGCAGTGCAATG
AAGAGGAGCCACACGCGAGGCGGTAGTCCTGCCGGAGCGGTACTACCACTCGCCCTAACGGTACTACCACTCGCCCTAAC
GGTACTATCGCTGTGGTTACAGCTCAGGGGCATAGGGAGATAGGGCAGGCCAGTGGAGTGTGGCAGTACCGCAACAGCGG
TACTACCGCCCAGTGTGAGCGGTACTGCCACTTATAAGCTGTAGTATCGCGCACCCACTGCCGCCCTACAACCGCTGAGA
GCG
>chr5B_511
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------------------------------ATCAAACAAACAAACATGTTGAAGAGTAATACT------AGTGATGTAAT
GGTGTGCGTCTGTGCACTCGACAGGGGCGAGCAGGCA----TGCCAGCCCAACAAAGCGATGAAGGTGTCTGCCTGCCTC
C--------GGCCCTCGACCATGGCCACGTGCTTCCCGTCGCCCGCTGTTCCTCCCTGTCGCCTCCCTGCCCGCCTCCAC
AGATTCTTCTTCCTCCTCCATTTCATCATAAAATTTAGCGCATGCAAATCGCAAACGTAGGT----------------AG
TACAACTGCTTCTCTGGATCAGCATTGCTTATAATTCCTCGAGAATATAT--TAATGCCGACGCGGCTAGATTGCTAGTT
TAAACTTTAAAGCAAACTATGCCCTATATAAACACATCCACGGCACAGCTGATGTACAAGA----ACACATCCACGGCAC
ATCA----TTCCGGCCTGAGTTAACGC----------------------GTGCAGGGCGAGGCAGTCGGTGAGACCATGT
CGAAGCCGAGGCTGGACGGCAAGGTGGCCATCGTGACGGGCGGCGCGAGCGGCATCGGCGAGGCGGCGGCGCGGCTCTTC
GCGGCCAGCGGCGCCACGGTGGTCATCGCGGACATCCAGGACGCGCTGGGCGAAGCGGTGGCGGCGTCCATCGCGGAGTC
CGGCGCGTGCTGCACGTACGCGCGGTGCGACGTGACGGACGAGGCGCAGGTGGAGGCCACGGTGGCGGCGGCCGTGGCGG
CGCACGGCCGGCTAGACGTCATGCTCAGCAACGCCGGCGTGCTGCTCCCGACGGGCCCCGTCATGGAAATGGACCTGTCC
GCGCTCGACCGCGTCATGGCCGTCAACTTCCGCGGCGCGGCGGCGTGCGTCAAGCACGCGGCCCGCGCCATGGTGGCCGC
GGGCGTCCGCGGCGCCATCGTGTGCACAGGGAGCGTCGCGTGCGTGCAGGGCGGGTACGGCCCGGCCTCCTACACGGCGT
CCAAGCACGCGCTGCTGGGCCTGGTGCGCGCCGCGGCGGGCGAGCTCGGGCGCCACGGCGTGCGCGTCAACCTCGTGTCC
CCCGGCGGAGTGGCGACGCCGCTGAGCTGCGCGGTGGTGGGCGTGGGCGCCGAGGAGATGGAGGCCATGACGGAGGCCCA
CAACGTGCTGCGCGGGAAGGTGCTGCGCGCGGCCGACGTGGCGGAGGCCGCGCTGTTCCTCGCGTCCGACCAGGCGGGCT
TCATCAGCGGCCACAACCTCGTCGTCGACGGCGCCACCACCGCCGTCAACCCCGCCGTGCTGCGCTCCATCGGGCTGTGA
TCTGCGCCGCACGTCCATCGTCTCAT----CAGCTCTCTTGATCTGTTCATACTACAGCTACAGCTACAGCAGCAGTTAA
TATTAGTAATGTGATTCCTTGAAAAATATATAAATGTTGTGACATGACGAGAATTAATACTTCTTGCGTGAATTTTGTAT
GGTATA-TCTTCGGCATTTTACTTC-TTTTTT--TTGAGAAATCTTCGGCATTTTACTAAGCTGCACTGGATGGAGTGTC
AGAGAAATTGTCAGAAATGTCAAACGGAACCTAGAGTG-GAGTGGGAGTGCACGAAGTCGCACGTCTGAAAACGAACAGC
ACCTGGCAGAACAGTTTTTTTATTCAGTGAACAAGCCTGTCAAAAAGCTTGGCTC--------ATC--TATATGCCGTCG
CTATTGGCCGAACGCTTCAGTCTGGGCACCTCTCAGACCGAACCTTTCGATCGGTACGAGCAGTATCCTACCACTAACGA
TTTCGTTCGGTACGCACTAACTTCAA-GTCTAGATCTAAGGGTTTCC--TCACATAGAAAAGAAAGTGATTGGTGAAAAT
ATAGAGTTAGATCTCTTC-TTTATTTTCTCTCAAGAAATAGAAAGAATCATTGAAGACATTGAGAGATAGCAAGCTCGAA
AAAGATCAATAAT-------------------------------------------------------------------
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>chr7D_2286
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------------------AACTCTAGGATCTAGATCCAAGGGATTCCCCTCACATAAAGGAGAAAGTGATTGGTGGAAAC
GTAGATCTAGATCTTCTC-TTTCTTTTCCCTCAAGAACTAGCAAGAATCATTGGAGGGATTGAGAAATAGCAAGCTCGAA
GAAGGTCAACAATGGGGGAAGAACATGAGCTAGAAGGATAAGGTTCATTGGGGAAGAAGACCCCCTTTTATAGGCACC--
---------CCGTTATGCACACAGCTCGTGCACAAGCTGTAC---CGCTCGGACGGTGGTACCCACATAGCAGTGCAATG
GCGAGGAGCCAC----GAGGTGGTAGTGCTACCGGAGCGGTACTACCAATCGCCCTAG---------------------C
GGTACTACGGCTGGGGTTGCAGCTTAGGGGCCTACGGAGATAGGGCAGGGCAGTGGAGTGTGGCAGTAACGCA--AGCGG
TACTACCGCCCAGTGTGAGCGGTACTACTGCTTG-AAGTTGTAGTACCACGCATCCACTGCCGCCCTACTATCGCTGAGA
GCG
>SNPs
SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------S---
-----------------S---S--------S--SSSSSSSS---------------------SSSSSSSSSS---S----
------SSSSSSSSSSSSSSSSSSSSSSSS---------------------SS-------S-----SS-S----------
-S----S------------------------------SSSS-------------SS----S---------S--------S
-SSSSSSSS------------------------S-----------------------------S----------------
---------S------------------S--------------------------------S------------------
----S------------------------------------------S-----------------------------S--
------------------------------------S-----------------S----------S--------------
---S--SS-------S---------------SS-----S-S-S-------------------------------------
-----------S-------------------------------------------------------S------------
-----------------------------------S-----------------------S--------------------
---------------------------------------------------------------------------S----
-------------------------------------------------------------------S------------
-----S--------------------------------S--S--------------------------------------
------------------------------------------------------------------S--S----------
-------------------------------------------------------------------------------S
--------------------------------S--------------S-----------------------S--------
---------------------------------------------S-----------------------------S----
----------------------------------------------S--------------------S------------
----------------------------------------------------S---------------------------
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----SSS----S-------------S------------------------------------------------------
------------------------SS-S-S-S------------------------------------------------
-------------S----------------------------------------------------SS------------
-----------------S------------------------------S-----------------------S-------
-----------------------------------------S----S-------------------------S-------
----------------------------------------------------------S---------------------
-------------------S---S-------S--------S----S------------S---S-S------SS----S--
----------S-------------------------S-------S------S-S-------------S------------
---------S--SS---------------S---------S-----S----------------------------------
----------S-----------------------S-S------------------S------------------------
------------------------S---------------------------S---------------------------
---
>forward_435
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---------------TATGCTCGAAGATGGGTCGC---------------------------------------------
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>reverse_2258
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-----------------AAGTCTGGGCACCTCTCAGA-------------------------------------------
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