Multiple sequence alignment - TraesCS4A01G358300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G358300 chr4A 100.000 2754 0 0 1 2754 631621892 631619139 0.000000e+00 5086.0
1 TraesCS4A01G358300 chr5B 88.877 1942 122 49 871 2754 679310791 679312696 0.000000e+00 2303.0
2 TraesCS4A01G358300 chr5B 79.562 411 62 20 1832 2229 635802818 635802417 9.720000e-70 274.0
3 TraesCS4A01G358300 chr5B 85.938 128 6 3 169 292 679310606 679310725 2.880000e-25 126.0
4 TraesCS4A01G358300 chr5B 100.000 34 0 0 16 49 679310543 679310576 2.290000e-06 63.9
5 TraesCS4A01G358300 chr5D 82.677 1218 109 56 565 1735 538254552 538255714 0.000000e+00 987.0
6 TraesCS4A01G358300 chr5D 80.440 409 56 20 1826 2223 549767354 549767749 9.650000e-75 291.0
7 TraesCS4A01G358300 chr7A 80.473 804 99 34 974 1735 150021617 150022404 1.850000e-156 562.0
8 TraesCS4A01G358300 chr7A 79.430 807 107 35 973 1735 149862979 149862188 1.460000e-142 516.0
9 TraesCS4A01G358300 chr7A 86.282 277 32 6 292 563 54982285 54982560 2.070000e-76 296.0
10 TraesCS4A01G358300 chr7A 88.776 98 10 1 478 575 681516682 681516586 4.820000e-23 119.0
11 TraesCS4A01G358300 chr7A 87.500 104 12 1 472 575 681621572 681621674 4.820000e-23 119.0
12 TraesCS4A01G358300 chr7A 79.775 89 8 3 820 906 149863093 149863013 3.830000e-04 56.5
13 TraesCS4A01G358300 chr7D 80.362 774 95 35 990 1735 149181064 149181808 4.040000e-148 534.0
14 TraesCS4A01G358300 chr7D 80.989 263 39 7 300 561 58612610 58612358 6.020000e-47 198.0
15 TraesCS4A01G358300 chr2A 78.414 769 114 28 995 1737 185264710 185265452 1.160000e-123 453.0
16 TraesCS4A01G358300 chr2A 81.685 546 70 17 1213 1737 185364736 185364200 7.050000e-116 427.0
17 TraesCS4A01G358300 chr2B 81.685 546 70 16 1213 1737 232291327 232290791 7.050000e-116 427.0
18 TraesCS4A01G358300 chr2D 77.821 780 109 32 1002 1737 165485590 165484831 9.120000e-115 424.0
19 TraesCS4A01G358300 chr6B 80.851 423 49 28 1826 2231 176281133 176281540 1.240000e-78 303.0
20 TraesCS4A01G358300 chr6B 84.615 273 34 5 300 565 436780566 436780295 5.850000e-67 265.0
21 TraesCS4A01G358300 chr4B 86.909 275 28 8 300 568 541129573 541129301 4.460000e-78 302.0
22 TraesCS4A01G358300 chr3B 86.517 267 32 4 300 563 598984237 598984502 9.650000e-75 291.0
23 TraesCS4A01G358300 chr3B 79.126 412 58 19 1826 2229 680220463 680220072 2.720000e-65 259.0
24 TraesCS4A01G358300 chr3B 78.488 344 54 17 1888 2223 63004503 63004834 1.000000e-49 207.0
25 TraesCS4A01G358300 chr6A 79.426 418 57 24 1826 2231 111564001 111564401 4.520000e-68 268.0
26 TraesCS4A01G358300 chr5A 83.274 281 39 8 292 567 387396483 387396760 4.550000e-63 252.0
27 TraesCS4A01G358300 chr1B 79.945 364 51 16 1878 2233 599516060 599516409 5.890000e-62 248.0
28 TraesCS4A01G358300 chrUn 76.773 409 71 20 1826 2223 255568540 255568145 1.000000e-49 207.0
29 TraesCS4A01G358300 chrUn 100.000 28 0 0 1835 1862 37381294 37381321 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G358300 chr4A 631619139 631621892 2753 True 5086.000000 5086 100.0000 1 2754 1 chr4A.!!$R1 2753
1 TraesCS4A01G358300 chr5B 679310543 679312696 2153 False 830.966667 2303 91.6050 16 2754 3 chr5B.!!$F1 2738
2 TraesCS4A01G358300 chr5D 538254552 538255714 1162 False 987.000000 987 82.6770 565 1735 1 chr5D.!!$F1 1170
3 TraesCS4A01G358300 chr7A 150021617 150022404 787 False 562.000000 562 80.4730 974 1735 1 chr7A.!!$F2 761
4 TraesCS4A01G358300 chr7A 149862188 149863093 905 True 286.250000 516 79.6025 820 1735 2 chr7A.!!$R2 915
5 TraesCS4A01G358300 chr7D 149181064 149181808 744 False 534.000000 534 80.3620 990 1735 1 chr7D.!!$F1 745
6 TraesCS4A01G358300 chr2A 185264710 185265452 742 False 453.000000 453 78.4140 995 1737 1 chr2A.!!$F1 742
7 TraesCS4A01G358300 chr2A 185364200 185364736 536 True 427.000000 427 81.6850 1213 1737 1 chr2A.!!$R1 524
8 TraesCS4A01G358300 chr2B 232290791 232291327 536 True 427.000000 427 81.6850 1213 1737 1 chr2B.!!$R1 524
9 TraesCS4A01G358300 chr2D 165484831 165485590 759 True 424.000000 424 77.8210 1002 1737 1 chr2D.!!$R1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.035439 CTTGACCGGCCACTACCAAT 60.035 55.0 0.0 0.0 0.0 3.16 F
127 128 0.103026 CTGCACGCCTATGTCTAGCA 59.897 55.0 0.0 0.0 0.0 3.49 F
129 130 0.103208 GCACGCCTATGTCTAGCACT 59.897 55.0 0.0 0.0 0.0 4.40 F
1429 1515 0.029035 GTCGTCTATGGCGTCGTCAT 59.971 55.0 17.6 17.6 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1413 1499 0.029035 ACGATGACGACGCCATAGAC 59.971 55.0 10.90 0.00 42.66 2.59 R
1414 1500 0.306840 GACGATGACGACGCCATAGA 59.693 55.0 10.90 0.00 42.66 1.98 R
1449 1543 0.468226 AGAAGGTGAAGTTGACGCCA 59.532 50.0 0.00 0.00 39.99 5.69 R
2588 2709 0.025001 GCGTGTGTCATCATGTACGC 59.975 55.0 12.81 12.81 42.08 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 0.320697 AGAACTTGACCGGCCACTAC 59.679 55.000 0.00 0.00 0.00 2.73
52 53 1.373435 CTTGACCGGCCACTACCAA 59.627 57.895 0.00 0.00 0.00 3.67
53 54 0.035439 CTTGACCGGCCACTACCAAT 60.035 55.000 0.00 0.00 0.00 3.16
54 55 1.208535 CTTGACCGGCCACTACCAATA 59.791 52.381 0.00 0.00 0.00 1.90
55 56 1.277579 TGACCGGCCACTACCAATAA 58.722 50.000 0.00 0.00 0.00 1.40
56 57 1.629353 TGACCGGCCACTACCAATAAA 59.371 47.619 0.00 0.00 0.00 1.40
57 58 2.011947 GACCGGCCACTACCAATAAAC 58.988 52.381 0.00 0.00 0.00 2.01
58 59 1.631898 ACCGGCCACTACCAATAAACT 59.368 47.619 0.00 0.00 0.00 2.66
59 60 2.040679 ACCGGCCACTACCAATAAACTT 59.959 45.455 0.00 0.00 0.00 2.66
60 61 2.422127 CCGGCCACTACCAATAAACTTG 59.578 50.000 2.24 0.00 0.00 3.16
61 62 3.078837 CGGCCACTACCAATAAACTTGT 58.921 45.455 2.24 0.00 0.00 3.16
62 63 3.119990 CGGCCACTACCAATAAACTTGTG 60.120 47.826 2.24 0.00 0.00 3.33
63 64 3.824443 GGCCACTACCAATAAACTTGTGT 59.176 43.478 0.00 0.00 0.00 3.72
64 65 5.005094 GGCCACTACCAATAAACTTGTGTA 58.995 41.667 0.00 0.00 0.00 2.90
65 66 5.650703 GGCCACTACCAATAAACTTGTGTAT 59.349 40.000 0.00 0.00 0.00 2.29
66 67 6.404293 GGCCACTACCAATAAACTTGTGTATG 60.404 42.308 0.00 0.00 0.00 2.39
67 68 6.404293 GCCACTACCAATAAACTTGTGTATGG 60.404 42.308 0.00 0.00 0.00 2.74
68 69 6.882140 CCACTACCAATAAACTTGTGTATGGA 59.118 38.462 0.00 0.00 0.00 3.41
69 70 7.556275 CCACTACCAATAAACTTGTGTATGGAT 59.444 37.037 0.00 0.00 0.00 3.41
70 71 8.397906 CACTACCAATAAACTTGTGTATGGATG 58.602 37.037 0.00 0.00 0.00 3.51
71 72 8.107095 ACTACCAATAAACTTGTGTATGGATGT 58.893 33.333 0.00 0.00 0.00 3.06
72 73 7.775053 ACCAATAAACTTGTGTATGGATGTT 57.225 32.000 0.00 0.00 0.00 2.71
73 74 7.601856 ACCAATAAACTTGTGTATGGATGTTG 58.398 34.615 0.00 0.00 0.00 3.33
74 75 6.531240 CCAATAAACTTGTGTATGGATGTTGC 59.469 38.462 0.00 0.00 0.00 4.17
75 76 6.832520 ATAAACTTGTGTATGGATGTTGCA 57.167 33.333 0.00 0.00 0.00 4.08
76 77 5.726980 AAACTTGTGTATGGATGTTGCAT 57.273 34.783 0.00 0.00 31.80 3.96
77 78 4.707030 ACTTGTGTATGGATGTTGCATG 57.293 40.909 0.00 0.00 29.08 4.06
78 79 3.119388 ACTTGTGTATGGATGTTGCATGC 60.119 43.478 11.82 11.82 31.96 4.06
79 80 2.444421 TGTGTATGGATGTTGCATGCA 58.556 42.857 18.46 18.46 38.32 3.96
80 81 2.824341 TGTGTATGGATGTTGCATGCAA 59.176 40.909 28.80 28.80 41.64 4.08
110 111 2.800881 TCTATCTACATGCACGGCTG 57.199 50.000 0.00 0.00 0.00 4.85
111 112 1.143305 CTATCTACATGCACGGCTGC 58.857 55.000 0.00 0.00 44.52 5.25
125 126 2.892305 GCTGCACGCCTATGTCTAG 58.108 57.895 0.00 0.00 0.00 2.43
126 127 1.218230 GCTGCACGCCTATGTCTAGC 61.218 60.000 0.00 0.00 0.00 3.42
127 128 0.103026 CTGCACGCCTATGTCTAGCA 59.897 55.000 0.00 0.00 0.00 3.49
128 129 0.179111 TGCACGCCTATGTCTAGCAC 60.179 55.000 0.00 0.00 0.00 4.40
129 130 0.103208 GCACGCCTATGTCTAGCACT 59.897 55.000 0.00 0.00 0.00 4.40
130 131 1.337071 GCACGCCTATGTCTAGCACTA 59.663 52.381 0.00 0.00 0.00 2.74
131 132 2.223735 GCACGCCTATGTCTAGCACTAA 60.224 50.000 0.00 0.00 0.00 2.24
132 133 3.372954 CACGCCTATGTCTAGCACTAAC 58.627 50.000 0.00 0.00 0.00 2.34
133 134 3.021695 ACGCCTATGTCTAGCACTAACA 58.978 45.455 0.00 0.00 0.00 2.41
134 135 3.446161 ACGCCTATGTCTAGCACTAACAA 59.554 43.478 0.00 0.00 0.00 2.83
135 136 4.081862 ACGCCTATGTCTAGCACTAACAAA 60.082 41.667 0.00 0.00 0.00 2.83
136 137 4.267928 CGCCTATGTCTAGCACTAACAAAC 59.732 45.833 0.00 0.00 0.00 2.93
137 138 5.420409 GCCTATGTCTAGCACTAACAAACT 58.580 41.667 0.00 0.00 0.00 2.66
138 139 6.570692 GCCTATGTCTAGCACTAACAAACTA 58.429 40.000 0.00 0.00 0.00 2.24
139 140 7.039882 GCCTATGTCTAGCACTAACAAACTAA 58.960 38.462 0.00 0.00 0.00 2.24
140 141 7.010275 GCCTATGTCTAGCACTAACAAACTAAC 59.990 40.741 0.00 0.00 0.00 2.34
141 142 8.251721 CCTATGTCTAGCACTAACAAACTAACT 58.748 37.037 0.00 0.00 0.00 2.24
142 143 7.891183 ATGTCTAGCACTAACAAACTAACTG 57.109 36.000 0.00 0.00 0.00 3.16
143 144 7.046292 TGTCTAGCACTAACAAACTAACTGA 57.954 36.000 0.00 0.00 0.00 3.41
144 145 6.921857 TGTCTAGCACTAACAAACTAACTGAC 59.078 38.462 0.00 0.00 0.00 3.51
145 146 7.146648 GTCTAGCACTAACAAACTAACTGACT 58.853 38.462 0.00 0.00 0.00 3.41
146 147 7.652507 GTCTAGCACTAACAAACTAACTGACTT 59.347 37.037 0.00 0.00 0.00 3.01
147 148 8.853126 TCTAGCACTAACAAACTAACTGACTTA 58.147 33.333 0.00 0.00 0.00 2.24
148 149 7.710766 AGCACTAACAAACTAACTGACTTAC 57.289 36.000 0.00 0.00 0.00 2.34
149 150 6.704937 AGCACTAACAAACTAACTGACTTACC 59.295 38.462 0.00 0.00 0.00 2.85
150 151 6.346359 GCACTAACAAACTAACTGACTTACCG 60.346 42.308 0.00 0.00 0.00 4.02
151 152 6.919662 CACTAACAAACTAACTGACTTACCGA 59.080 38.462 0.00 0.00 0.00 4.69
152 153 7.597743 CACTAACAAACTAACTGACTTACCGAT 59.402 37.037 0.00 0.00 0.00 4.18
153 154 8.146412 ACTAACAAACTAACTGACTTACCGATT 58.854 33.333 0.00 0.00 0.00 3.34
154 155 7.797038 AACAAACTAACTGACTTACCGATTT 57.203 32.000 0.00 0.00 0.00 2.17
155 156 7.797038 ACAAACTAACTGACTTACCGATTTT 57.203 32.000 0.00 0.00 0.00 1.82
156 157 8.217131 ACAAACTAACTGACTTACCGATTTTT 57.783 30.769 0.00 0.00 0.00 1.94
157 158 8.340443 ACAAACTAACTGACTTACCGATTTTTC 58.660 33.333 0.00 0.00 0.00 2.29
158 159 8.557029 CAAACTAACTGACTTACCGATTTTTCT 58.443 33.333 0.00 0.00 0.00 2.52
159 160 7.886405 ACTAACTGACTTACCGATTTTTCTC 57.114 36.000 0.00 0.00 0.00 2.87
160 161 7.668492 ACTAACTGACTTACCGATTTTTCTCT 58.332 34.615 0.00 0.00 0.00 3.10
161 162 8.800332 ACTAACTGACTTACCGATTTTTCTCTA 58.200 33.333 0.00 0.00 0.00 2.43
162 163 7.886405 AACTGACTTACCGATTTTTCTCTAC 57.114 36.000 0.00 0.00 0.00 2.59
163 164 7.229581 ACTGACTTACCGATTTTTCTCTACT 57.770 36.000 0.00 0.00 0.00 2.57
164 165 8.345724 ACTGACTTACCGATTTTTCTCTACTA 57.654 34.615 0.00 0.00 0.00 1.82
165 166 8.800332 ACTGACTTACCGATTTTTCTCTACTAA 58.200 33.333 0.00 0.00 0.00 2.24
166 167 9.804758 CTGACTTACCGATTTTTCTCTACTAAT 57.195 33.333 0.00 0.00 0.00 1.73
180 181 2.200373 ACTAATTTGTCCAGCCGCTT 57.800 45.000 0.00 0.00 0.00 4.68
195 196 2.328235 GCTTGATCCATCATGCGCT 58.672 52.632 9.73 0.00 44.41 5.92
234 239 2.603247 GCATCGCACAACACCACGA 61.603 57.895 0.00 0.00 39.11 4.35
239 244 1.494766 CGCACAACACCACGACATCA 61.495 55.000 0.00 0.00 0.00 3.07
245 250 0.468226 ACACCACGACATCACACCTT 59.532 50.000 0.00 0.00 0.00 3.50
246 251 0.867746 CACCACGACATCACACCTTG 59.132 55.000 0.00 0.00 0.00 3.61
247 252 0.884704 ACCACGACATCACACCTTGC 60.885 55.000 0.00 0.00 0.00 4.01
248 253 0.884259 CCACGACATCACACCTTGCA 60.884 55.000 0.00 0.00 0.00 4.08
249 254 0.235665 CACGACATCACACCTTGCAC 59.764 55.000 0.00 0.00 0.00 4.57
250 255 0.884704 ACGACATCACACCTTGCACC 60.885 55.000 0.00 0.00 0.00 5.01
251 256 1.868997 GACATCACACCTTGCACCG 59.131 57.895 0.00 0.00 0.00 4.94
252 257 0.884704 GACATCACACCTTGCACCGT 60.885 55.000 0.00 0.00 0.00 4.83
275 280 1.521457 CGCCACATCATACGGCAGT 60.521 57.895 0.00 0.00 46.60 4.40
278 283 2.285083 GCCACATCATACGGCAGTTAA 58.715 47.619 0.00 0.00 45.52 2.01
292 297 2.178235 GTTAACATCTCGCCCCGCC 61.178 63.158 0.00 0.00 0.00 6.13
293 298 2.363975 TTAACATCTCGCCCCGCCT 61.364 57.895 0.00 0.00 0.00 5.52
302 307 2.445274 GCCCCGCCTACCTCCTTA 60.445 66.667 0.00 0.00 0.00 2.69
303 308 1.842010 GCCCCGCCTACCTCCTTAT 60.842 63.158 0.00 0.00 0.00 1.73
305 310 1.371558 CCCGCCTACCTCCTTATGC 59.628 63.158 0.00 0.00 0.00 3.14
306 311 1.122019 CCCGCCTACCTCCTTATGCT 61.122 60.000 0.00 0.00 0.00 3.79
307 312 0.318762 CCGCCTACCTCCTTATGCTC 59.681 60.000 0.00 0.00 0.00 4.26
309 314 1.689273 CGCCTACCTCCTTATGCTCTT 59.311 52.381 0.00 0.00 0.00 2.85
310 315 2.546795 CGCCTACCTCCTTATGCTCTTG 60.547 54.545 0.00 0.00 0.00 3.02
311 316 2.224402 GCCTACCTCCTTATGCTCTTGG 60.224 54.545 0.00 0.00 0.00 3.61
312 317 3.309296 CCTACCTCCTTATGCTCTTGGA 58.691 50.000 0.00 0.00 0.00 3.53
313 318 3.711704 CCTACCTCCTTATGCTCTTGGAA 59.288 47.826 0.00 0.00 0.00 3.53
314 319 4.164221 CCTACCTCCTTATGCTCTTGGAAA 59.836 45.833 0.00 0.00 0.00 3.13
315 320 3.956744 ACCTCCTTATGCTCTTGGAAAC 58.043 45.455 0.00 0.00 0.00 2.78
316 321 3.589288 ACCTCCTTATGCTCTTGGAAACT 59.411 43.478 0.00 0.00 0.00 2.66
317 322 4.043435 ACCTCCTTATGCTCTTGGAAACTT 59.957 41.667 0.00 0.00 0.00 2.66
318 323 5.012893 CCTCCTTATGCTCTTGGAAACTTT 58.987 41.667 0.00 0.00 0.00 2.66
319 324 6.180472 CCTCCTTATGCTCTTGGAAACTTTA 58.820 40.000 0.00 0.00 0.00 1.85
320 325 6.317391 CCTCCTTATGCTCTTGGAAACTTTAG 59.683 42.308 0.00 0.00 0.00 1.85
321 326 7.016153 TCCTTATGCTCTTGGAAACTTTAGA 57.984 36.000 0.00 0.00 0.00 2.10
322 327 7.458397 TCCTTATGCTCTTGGAAACTTTAGAA 58.542 34.615 0.00 0.00 0.00 2.10
323 328 7.607991 TCCTTATGCTCTTGGAAACTTTAGAAG 59.392 37.037 0.00 0.00 0.00 2.85
324 329 7.148171 CCTTATGCTCTTGGAAACTTTAGAAGG 60.148 40.741 0.00 0.00 0.00 3.46
325 330 5.304686 TGCTCTTGGAAACTTTAGAAGGA 57.695 39.130 0.00 0.00 0.00 3.36
326 331 5.308825 TGCTCTTGGAAACTTTAGAAGGAG 58.691 41.667 0.00 0.00 0.00 3.69
327 332 5.071788 TGCTCTTGGAAACTTTAGAAGGAGA 59.928 40.000 0.00 0.00 0.00 3.71
328 333 5.641636 GCTCTTGGAAACTTTAGAAGGAGAG 59.358 44.000 0.00 0.00 0.00 3.20
329 334 6.115448 TCTTGGAAACTTTAGAAGGAGAGG 57.885 41.667 0.00 0.00 0.00 3.69
330 335 5.844516 TCTTGGAAACTTTAGAAGGAGAGGA 59.155 40.000 0.00 0.00 0.00 3.71
331 336 6.329197 TCTTGGAAACTTTAGAAGGAGAGGAA 59.671 38.462 0.00 0.00 0.00 3.36
332 337 5.866207 TGGAAACTTTAGAAGGAGAGGAAC 58.134 41.667 0.00 0.00 0.00 3.62
333 338 4.930405 GGAAACTTTAGAAGGAGAGGAACG 59.070 45.833 0.00 0.00 0.00 3.95
334 339 3.596310 ACTTTAGAAGGAGAGGAACGC 57.404 47.619 0.00 0.00 0.00 4.84
335 340 3.166679 ACTTTAGAAGGAGAGGAACGCT 58.833 45.455 0.00 0.00 44.68 5.07
336 341 4.342359 ACTTTAGAAGGAGAGGAACGCTA 58.658 43.478 0.00 0.00 39.71 4.26
337 342 4.399934 ACTTTAGAAGGAGAGGAACGCTAG 59.600 45.833 0.00 0.00 39.71 3.42
338 343 1.770294 AGAAGGAGAGGAACGCTAGG 58.230 55.000 0.00 0.00 39.71 3.02
339 344 1.285373 AGAAGGAGAGGAACGCTAGGA 59.715 52.381 0.00 0.00 39.71 2.94
340 345 2.091555 AGAAGGAGAGGAACGCTAGGAT 60.092 50.000 0.00 0.00 39.71 3.24
341 346 1.989706 AGGAGAGGAACGCTAGGATC 58.010 55.000 0.00 0.00 39.71 3.36
342 347 1.497286 AGGAGAGGAACGCTAGGATCT 59.503 52.381 0.00 0.00 39.71 2.75
343 348 2.091555 AGGAGAGGAACGCTAGGATCTT 60.092 50.000 0.00 0.00 39.71 2.40
344 349 2.696187 GGAGAGGAACGCTAGGATCTTT 59.304 50.000 0.00 0.00 39.71 2.52
345 350 3.243602 GGAGAGGAACGCTAGGATCTTTC 60.244 52.174 0.00 0.00 39.71 2.62
346 351 2.359531 AGAGGAACGCTAGGATCTTTCG 59.640 50.000 0.00 0.00 36.12 3.46
347 352 2.358267 GAGGAACGCTAGGATCTTTCGA 59.642 50.000 6.26 0.00 0.00 3.71
348 353 2.758979 AGGAACGCTAGGATCTTTCGAA 59.241 45.455 0.00 0.00 0.00 3.71
349 354 3.194968 AGGAACGCTAGGATCTTTCGAAA 59.805 43.478 10.71 10.71 0.00 3.46
350 355 3.306434 GGAACGCTAGGATCTTTCGAAAC 59.694 47.826 6.47 0.00 0.00 2.78
351 356 2.527100 ACGCTAGGATCTTTCGAAACG 58.473 47.619 6.47 8.96 0.00 3.60
352 357 2.094854 ACGCTAGGATCTTTCGAAACGT 60.095 45.455 6.47 9.61 0.00 3.99
353 358 2.530700 CGCTAGGATCTTTCGAAACGTC 59.469 50.000 6.47 7.76 0.00 4.34
354 359 3.731264 CGCTAGGATCTTTCGAAACGTCT 60.731 47.826 6.47 5.20 0.00 4.18
355 360 3.792421 GCTAGGATCTTTCGAAACGTCTC 59.208 47.826 6.47 1.55 0.00 3.36
356 361 4.439016 GCTAGGATCTTTCGAAACGTCTCT 60.439 45.833 6.47 9.35 0.00 3.10
357 362 3.839293 AGGATCTTTCGAAACGTCTCTG 58.161 45.455 6.47 0.00 0.00 3.35
358 363 2.345942 GGATCTTTCGAAACGTCTCTGC 59.654 50.000 6.47 0.00 0.00 4.26
359 364 1.405461 TCTTTCGAAACGTCTCTGCG 58.595 50.000 6.47 0.00 37.94 5.18
360 365 0.179272 CTTTCGAAACGTCTCTGCGC 60.179 55.000 6.47 0.00 34.88 6.09
361 366 1.554042 TTTCGAAACGTCTCTGCGCC 61.554 55.000 6.47 0.00 34.88 6.53
362 367 2.416244 TTCGAAACGTCTCTGCGCCT 62.416 55.000 4.18 0.00 34.88 5.52
363 368 2.022129 CGAAACGTCTCTGCGCCTT 61.022 57.895 4.18 0.00 34.88 4.35
364 369 1.493311 GAAACGTCTCTGCGCCTTG 59.507 57.895 4.18 0.00 34.88 3.61
365 370 1.901650 GAAACGTCTCTGCGCCTTGG 61.902 60.000 4.18 0.00 34.88 3.61
366 371 2.377628 AAACGTCTCTGCGCCTTGGA 62.378 55.000 4.18 0.00 34.88 3.53
367 372 2.172483 AACGTCTCTGCGCCTTGGAT 62.172 55.000 4.18 0.00 34.88 3.41
368 373 2.169789 CGTCTCTGCGCCTTGGATG 61.170 63.158 4.18 0.00 0.00 3.51
369 374 1.219124 GTCTCTGCGCCTTGGATGA 59.781 57.895 4.18 0.00 0.00 2.92
370 375 0.179062 GTCTCTGCGCCTTGGATGAT 60.179 55.000 4.18 0.00 0.00 2.45
371 376 0.543277 TCTCTGCGCCTTGGATGATT 59.457 50.000 4.18 0.00 0.00 2.57
372 377 0.942962 CTCTGCGCCTTGGATGATTC 59.057 55.000 4.18 0.00 0.00 2.52
373 378 0.543277 TCTGCGCCTTGGATGATTCT 59.457 50.000 4.18 0.00 0.00 2.40
374 379 1.065199 TCTGCGCCTTGGATGATTCTT 60.065 47.619 4.18 0.00 0.00 2.52
375 380 2.170397 TCTGCGCCTTGGATGATTCTTA 59.830 45.455 4.18 0.00 0.00 2.10
376 381 3.144506 CTGCGCCTTGGATGATTCTTAT 58.855 45.455 4.18 0.00 0.00 1.73
377 382 2.880268 TGCGCCTTGGATGATTCTTATG 59.120 45.455 4.18 0.00 0.00 1.90
378 383 2.227388 GCGCCTTGGATGATTCTTATGG 59.773 50.000 0.00 0.00 0.00 2.74
379 384 3.743521 CGCCTTGGATGATTCTTATGGA 58.256 45.455 0.00 0.00 0.00 3.41
380 385 4.136796 CGCCTTGGATGATTCTTATGGAA 58.863 43.478 0.00 0.00 38.41 3.53
381 386 4.580167 CGCCTTGGATGATTCTTATGGAAA 59.420 41.667 0.00 0.00 37.49 3.13
382 387 5.067674 CGCCTTGGATGATTCTTATGGAAAA 59.932 40.000 0.00 0.00 37.49 2.29
383 388 6.405731 CGCCTTGGATGATTCTTATGGAAAAA 60.406 38.462 0.00 0.00 37.49 1.94
400 405 3.680642 AAAAATCATGATGAGGCGACG 57.319 42.857 9.46 0.00 0.00 5.12
401 406 2.315925 AAATCATGATGAGGCGACGT 57.684 45.000 9.46 0.00 0.00 4.34
402 407 2.315925 AATCATGATGAGGCGACGTT 57.684 45.000 9.46 0.00 0.00 3.99
403 408 1.575244 ATCATGATGAGGCGACGTTG 58.425 50.000 7.59 0.00 0.00 4.10
404 409 0.246360 TCATGATGAGGCGACGTTGT 59.754 50.000 4.37 0.00 0.00 3.32
405 410 0.371301 CATGATGAGGCGACGTTGTG 59.629 55.000 4.37 0.00 0.00 3.33
406 411 0.740868 ATGATGAGGCGACGTTGTGG 60.741 55.000 4.37 0.00 0.00 4.17
407 412 2.047274 ATGAGGCGACGTTGTGGG 60.047 61.111 4.37 0.00 0.00 4.61
408 413 4.980805 TGAGGCGACGTTGTGGGC 62.981 66.667 4.37 0.06 37.12 5.36
410 415 4.250305 AGGCGACGTTGTGGGCTT 62.250 61.111 4.37 0.00 43.61 4.35
411 416 3.284449 GGCGACGTTGTGGGCTTT 61.284 61.111 4.37 0.00 34.37 3.51
412 417 2.051345 GCGACGTTGTGGGCTTTG 60.051 61.111 4.37 0.00 0.00 2.77
413 418 2.637025 CGACGTTGTGGGCTTTGG 59.363 61.111 0.00 0.00 0.00 3.28
414 419 2.335011 GACGTTGTGGGCTTTGGC 59.665 61.111 0.00 0.00 37.82 4.52
415 420 2.441164 ACGTTGTGGGCTTTGGCA 60.441 55.556 0.00 0.00 40.87 4.92
416 421 2.336088 CGTTGTGGGCTTTGGCAG 59.664 61.111 0.00 0.00 40.87 4.85
417 422 2.736531 GTTGTGGGCTTTGGCAGG 59.263 61.111 0.00 0.00 40.87 4.85
418 423 2.133641 GTTGTGGGCTTTGGCAGGT 61.134 57.895 0.00 0.00 40.87 4.00
419 424 2.132996 TTGTGGGCTTTGGCAGGTG 61.133 57.895 0.00 0.00 40.87 4.00
420 425 3.994853 GTGGGCTTTGGCAGGTGC 61.995 66.667 0.00 0.00 40.87 5.01
443 448 6.203808 CCAAAGGGCTGGTAGTAATTTTAC 57.796 41.667 0.00 0.00 0.00 2.01
444 449 5.712917 CCAAAGGGCTGGTAGTAATTTTACA 59.287 40.000 3.50 0.00 36.12 2.41
445 450 6.379988 CCAAAGGGCTGGTAGTAATTTTACAT 59.620 38.462 3.50 0.00 36.12 2.29
446 451 7.416326 CCAAAGGGCTGGTAGTAATTTTACATC 60.416 40.741 3.50 0.00 36.12 3.06
447 452 5.365619 AGGGCTGGTAGTAATTTTACATCG 58.634 41.667 3.50 0.00 36.12 3.84
448 453 4.024302 GGGCTGGTAGTAATTTTACATCGC 60.024 45.833 3.50 0.00 36.12 4.58
449 454 4.318546 GGCTGGTAGTAATTTTACATCGCG 60.319 45.833 0.00 0.00 36.12 5.87
450 455 4.505191 GCTGGTAGTAATTTTACATCGCGA 59.495 41.667 13.09 13.09 36.12 5.87
451 456 5.555818 GCTGGTAGTAATTTTACATCGCGAC 60.556 44.000 12.93 0.00 36.12 5.19
452 457 5.653507 TGGTAGTAATTTTACATCGCGACT 58.346 37.500 12.93 1.21 36.12 4.18
453 458 6.794374 TGGTAGTAATTTTACATCGCGACTA 58.206 36.000 12.93 0.00 36.12 2.59
454 459 7.257003 TGGTAGTAATTTTACATCGCGACTAA 58.743 34.615 12.93 7.53 36.12 2.24
455 460 7.922278 TGGTAGTAATTTTACATCGCGACTAAT 59.078 33.333 12.93 4.03 36.12 1.73
456 461 8.758715 GGTAGTAATTTTACATCGCGACTAATT 58.241 33.333 12.93 14.60 36.12 1.40
457 462 9.564041 GTAGTAATTTTACATCGCGACTAATTG 57.436 33.333 12.93 8.26 36.12 2.32
458 463 8.193250 AGTAATTTTACATCGCGACTAATTGT 57.807 30.769 12.93 14.71 36.12 2.71
459 464 8.662141 AGTAATTTTACATCGCGACTAATTGTT 58.338 29.630 12.93 5.09 36.12 2.83
460 465 9.269415 GTAATTTTACATCGCGACTAATTGTTT 57.731 29.630 12.93 5.35 33.88 2.83
461 466 8.736751 AATTTTACATCGCGACTAATTGTTTT 57.263 26.923 12.93 1.50 0.00 2.43
462 467 7.769719 TTTTACATCGCGACTAATTGTTTTC 57.230 32.000 12.93 0.00 0.00 2.29
463 468 6.715344 TTACATCGCGACTAATTGTTTTCT 57.285 33.333 12.93 0.00 0.00 2.52
464 469 5.607119 ACATCGCGACTAATTGTTTTCTT 57.393 34.783 12.93 0.00 0.00 2.52
465 470 5.618561 ACATCGCGACTAATTGTTTTCTTC 58.381 37.500 12.93 0.00 0.00 2.87
466 471 4.302173 TCGCGACTAATTGTTTTCTTCG 57.698 40.909 3.71 0.00 0.00 3.79
467 472 2.832745 CGCGACTAATTGTTTTCTTCGC 59.167 45.455 0.00 3.09 40.14 4.70
468 473 3.663233 CGCGACTAATTGTTTTCTTCGCA 60.663 43.478 0.00 0.00 43.09 5.10
469 474 4.403453 GCGACTAATTGTTTTCTTCGCAT 58.597 39.130 8.10 0.00 42.58 4.73
470 475 4.851558 GCGACTAATTGTTTTCTTCGCATT 59.148 37.500 8.10 0.00 42.58 3.56
471 476 5.342259 GCGACTAATTGTTTTCTTCGCATTT 59.658 36.000 8.10 0.00 42.58 2.32
472 477 6.665055 GCGACTAATTGTTTTCTTCGCATTTG 60.665 38.462 8.10 0.00 42.58 2.32
473 478 6.359617 CGACTAATTGTTTTCTTCGCATTTGT 59.640 34.615 0.00 0.00 0.00 2.83
474 479 7.532546 CGACTAATTGTTTTCTTCGCATTTGTA 59.467 33.333 0.00 0.00 0.00 2.41
475 480 8.502161 ACTAATTGTTTTCTTCGCATTTGTAC 57.498 30.769 0.00 0.00 0.00 2.90
476 481 6.432802 AATTGTTTTCTTCGCATTTGTACG 57.567 33.333 0.00 0.00 0.00 3.67
477 482 3.879427 TGTTTTCTTCGCATTTGTACGG 58.121 40.909 0.00 0.00 0.00 4.02
478 483 2.604969 TTTCTTCGCATTTGTACGGC 57.395 45.000 0.00 0.00 0.00 5.68
479 484 0.800012 TTCTTCGCATTTGTACGGCC 59.200 50.000 0.00 0.00 0.00 6.13
480 485 0.320858 TCTTCGCATTTGTACGGCCA 60.321 50.000 2.24 0.00 0.00 5.36
481 486 0.732571 CTTCGCATTTGTACGGCCAT 59.267 50.000 2.24 0.00 0.00 4.40
482 487 1.132262 CTTCGCATTTGTACGGCCATT 59.868 47.619 2.24 0.00 0.00 3.16
483 488 0.449786 TCGCATTTGTACGGCCATTG 59.550 50.000 2.24 0.00 0.00 2.82
484 489 0.449786 CGCATTTGTACGGCCATTGA 59.550 50.000 2.24 0.00 0.00 2.57
485 490 1.065401 CGCATTTGTACGGCCATTGAT 59.935 47.619 2.24 0.00 0.00 2.57
486 491 2.479389 CGCATTTGTACGGCCATTGATT 60.479 45.455 2.24 0.00 0.00 2.57
487 492 2.859538 GCATTTGTACGGCCATTGATTG 59.140 45.455 2.24 0.00 0.00 2.67
497 502 0.819582 CCATTGATTGGCTGTGGTCC 59.180 55.000 0.00 0.00 39.09 4.46
498 503 1.617804 CCATTGATTGGCTGTGGTCCT 60.618 52.381 0.00 0.00 39.09 3.85
499 504 1.747355 CATTGATTGGCTGTGGTCCTC 59.253 52.381 0.00 0.00 0.00 3.71
500 505 0.321564 TTGATTGGCTGTGGTCCTCG 60.322 55.000 0.00 0.00 0.00 4.63
501 506 1.450312 GATTGGCTGTGGTCCTCGG 60.450 63.158 0.00 0.00 0.00 4.63
502 507 1.899437 GATTGGCTGTGGTCCTCGGA 61.899 60.000 3.84 0.00 0.00 4.55
503 508 2.185310 ATTGGCTGTGGTCCTCGGAC 62.185 60.000 7.57 7.57 43.87 4.79
513 518 2.825861 GTCCTCGGACCTTGTTACAA 57.174 50.000 4.73 0.00 39.08 2.41
514 519 3.329929 GTCCTCGGACCTTGTTACAAT 57.670 47.619 4.73 0.00 39.08 2.71
515 520 3.671716 GTCCTCGGACCTTGTTACAATT 58.328 45.455 4.73 0.00 39.08 2.32
516 521 3.683340 GTCCTCGGACCTTGTTACAATTC 59.317 47.826 4.73 0.00 39.08 2.17
517 522 3.581332 TCCTCGGACCTTGTTACAATTCT 59.419 43.478 0.00 0.00 0.00 2.40
518 523 3.933332 CCTCGGACCTTGTTACAATTCTC 59.067 47.826 0.00 0.00 0.00 2.87
519 524 4.322801 CCTCGGACCTTGTTACAATTCTCT 60.323 45.833 0.00 0.00 0.00 3.10
520 525 4.817517 TCGGACCTTGTTACAATTCTCTC 58.182 43.478 0.00 0.00 0.00 3.20
521 526 4.527038 TCGGACCTTGTTACAATTCTCTCT 59.473 41.667 0.00 0.00 0.00 3.10
522 527 5.011738 TCGGACCTTGTTACAATTCTCTCTT 59.988 40.000 0.00 0.00 0.00 2.85
523 528 6.209986 TCGGACCTTGTTACAATTCTCTCTTA 59.790 38.462 0.00 0.00 0.00 2.10
524 529 6.872020 CGGACCTTGTTACAATTCTCTCTTAA 59.128 38.462 0.00 0.00 0.00 1.85
525 530 7.549488 CGGACCTTGTTACAATTCTCTCTTAAT 59.451 37.037 0.00 0.00 0.00 1.40
526 531 9.232473 GGACCTTGTTACAATTCTCTCTTAATT 57.768 33.333 0.00 0.00 0.00 1.40
552 557 7.910441 ATGAAATGCCAAATCTTTTACCTTG 57.090 32.000 0.00 0.00 0.00 3.61
553 558 6.825610 TGAAATGCCAAATCTTTTACCTTGT 58.174 32.000 0.00 0.00 0.00 3.16
554 559 7.278875 TGAAATGCCAAATCTTTTACCTTGTT 58.721 30.769 0.00 0.00 0.00 2.83
555 560 7.772757 TGAAATGCCAAATCTTTTACCTTGTTT 59.227 29.630 0.00 0.00 0.00 2.83
556 561 7.728847 AATGCCAAATCTTTTACCTTGTTTC 57.271 32.000 0.00 0.00 0.00 2.78
557 562 6.227298 TGCCAAATCTTTTACCTTGTTTCA 57.773 33.333 0.00 0.00 0.00 2.69
558 563 6.644347 TGCCAAATCTTTTACCTTGTTTCAA 58.356 32.000 0.00 0.00 0.00 2.69
559 564 7.106239 TGCCAAATCTTTTACCTTGTTTCAAA 58.894 30.769 0.00 0.00 0.00 2.69
560 565 7.607991 TGCCAAATCTTTTACCTTGTTTCAAAA 59.392 29.630 0.00 0.00 0.00 2.44
561 566 8.454894 GCCAAATCTTTTACCTTGTTTCAAAAA 58.545 29.630 0.00 0.00 0.00 1.94
673 680 1.270518 CCTAAGCTGCGTATCTGCCAT 60.271 52.381 0.00 0.00 40.10 4.40
675 682 0.107508 AAGCTGCGTATCTGCCATGT 60.108 50.000 0.00 0.00 40.10 3.21
677 684 0.811219 GCTGCGTATCTGCCATGTGA 60.811 55.000 0.00 0.00 34.04 3.58
678 685 0.933097 CTGCGTATCTGCCATGTGAC 59.067 55.000 0.00 0.00 0.00 3.67
679 686 0.805711 TGCGTATCTGCCATGTGACG 60.806 55.000 0.00 0.00 0.00 4.35
680 687 0.806102 GCGTATCTGCCATGTGACGT 60.806 55.000 0.00 0.00 33.05 4.34
681 688 1.640428 CGTATCTGCCATGTGACGTT 58.360 50.000 0.00 0.00 0.00 3.99
682 689 1.999735 CGTATCTGCCATGTGACGTTT 59.000 47.619 0.00 0.00 0.00 3.60
683 690 2.029244 CGTATCTGCCATGTGACGTTTC 59.971 50.000 0.00 0.00 0.00 2.78
684 691 1.453155 ATCTGCCATGTGACGTTTCC 58.547 50.000 0.00 0.00 0.00 3.13
695 716 3.558418 TGTGACGTTTCCTTTTAGTCTGC 59.442 43.478 0.00 0.00 33.40 4.26
698 719 5.407387 GTGACGTTTCCTTTTAGTCTGCATA 59.593 40.000 0.00 0.00 33.40 3.14
701 722 7.985184 TGACGTTTCCTTTTAGTCTGCATATAT 59.015 33.333 0.00 0.00 33.40 0.86
714 735 8.668510 AGTCTGCATATATAAGTTGTCCAAAG 57.331 34.615 0.00 0.00 0.00 2.77
719 740 9.237187 TGCATATATAAGTTGTCCAAAGTCAAA 57.763 29.630 0.00 0.00 0.00 2.69
720 741 9.503427 GCATATATAAGTTGTCCAAAGTCAAAC 57.497 33.333 0.00 0.00 0.00 2.93
783 806 4.225267 GGAGGAAGGGAGTATCTCAAACAA 59.775 45.833 0.00 0.00 38.91 2.83
784 807 5.423886 GAGGAAGGGAGTATCTCAAACAAG 58.576 45.833 0.00 0.00 38.91 3.16
785 808 4.226168 AGGAAGGGAGTATCTCAAACAAGG 59.774 45.833 0.00 0.00 38.91 3.61
786 809 3.636153 AGGGAGTATCTCAAACAAGGC 57.364 47.619 0.00 0.00 38.91 4.35
787 810 2.912956 AGGGAGTATCTCAAACAAGGCA 59.087 45.455 0.00 0.00 38.91 4.75
788 811 3.330701 AGGGAGTATCTCAAACAAGGCAA 59.669 43.478 0.00 0.00 38.91 4.52
789 812 3.691609 GGGAGTATCTCAAACAAGGCAAG 59.308 47.826 0.00 0.00 33.91 4.01
790 813 3.691609 GGAGTATCTCAAACAAGGCAAGG 59.308 47.826 0.00 0.00 33.73 3.61
791 814 3.084786 AGTATCTCAAACAAGGCAAGGC 58.915 45.455 0.00 0.00 0.00 4.35
792 815 1.999648 ATCTCAAACAAGGCAAGGCA 58.000 45.000 0.00 0.00 0.00 4.75
866 891 1.145571 TAAACTCACCCCAAGTGCCT 58.854 50.000 0.00 0.00 46.81 4.75
867 892 0.468029 AAACTCACCCCAAGTGCCTG 60.468 55.000 0.00 0.00 46.81 4.85
868 893 1.645402 AACTCACCCCAAGTGCCTGT 61.645 55.000 0.00 0.00 46.81 4.00
869 894 1.302832 CTCACCCCAAGTGCCTGTC 60.303 63.158 0.00 0.00 46.81 3.51
870 895 1.770110 TCACCCCAAGTGCCTGTCT 60.770 57.895 0.00 0.00 46.81 3.41
871 896 1.601759 CACCCCAAGTGCCTGTCTG 60.602 63.158 0.00 0.00 40.28 3.51
872 897 2.034687 CCCCAAGTGCCTGTCTGG 59.965 66.667 0.00 0.00 39.35 3.86
919 944 0.396695 TCACCTGGATCGTACCCTCC 60.397 60.000 0.00 2.10 0.00 4.30
920 945 0.686441 CACCTGGATCGTACCCTCCA 60.686 60.000 0.00 9.94 39.23 3.86
921 946 0.686769 ACCTGGATCGTACCCTCCAC 60.687 60.000 0.00 0.00 36.63 4.02
922 947 1.734137 CTGGATCGTACCCTCCACG 59.266 63.158 6.91 0.00 36.63 4.94
926 951 4.828409 TCGTACCCTCCACGAACT 57.172 55.556 0.00 0.00 44.79 3.01
927 952 3.955145 TCGTACCCTCCACGAACTA 57.045 52.632 0.00 0.00 44.79 2.24
928 953 1.742761 TCGTACCCTCCACGAACTAG 58.257 55.000 0.00 0.00 44.79 2.57
1024 1063 1.070758 CCATGGTTATCTCCTCCGGTG 59.929 57.143 2.57 0.00 0.00 4.94
1028 1067 1.829222 GGTTATCTCCTCCGGTGTTCA 59.171 52.381 0.00 0.00 0.00 3.18
1071 1110 1.203994 GCAACCTTGATGCTGCTCATT 59.796 47.619 0.00 0.00 40.64 2.57
1188 1268 0.299895 CGTCATGCTCATGCGTCTTC 59.700 55.000 14.12 0.17 43.34 2.87
1189 1269 1.649664 GTCATGCTCATGCGTCTTCT 58.350 50.000 5.04 0.00 43.34 2.85
1209 1295 1.228613 CCAAACCTTAACCCCGGCA 60.229 57.895 0.00 0.00 0.00 5.69
1210 1296 0.613572 CCAAACCTTAACCCCGGCAT 60.614 55.000 0.00 0.00 0.00 4.40
1264 1350 1.153647 CGCCACCAAGAGCATCGTA 60.154 57.895 0.00 0.00 42.67 3.43
1342 1428 2.358247 GTCCGCGTCACCAACCAT 60.358 61.111 4.92 0.00 0.00 3.55
1345 1431 2.677003 CCGCGTCACCAACCATGTC 61.677 63.158 4.92 0.00 0.00 3.06
1346 1432 2.860293 GCGTCACCAACCATGTCG 59.140 61.111 0.00 0.00 0.00 4.35
1347 1433 2.860293 CGTCACCAACCATGTCGC 59.140 61.111 0.00 0.00 0.00 5.19
1348 1434 2.860293 GTCACCAACCATGTCGCG 59.140 61.111 0.00 0.00 0.00 5.87
1407 1493 4.243008 TGCGAAACGGCTGGGTCA 62.243 61.111 0.00 0.00 0.00 4.02
1408 1494 2.746277 GCGAAACGGCTGGGTCAT 60.746 61.111 0.00 0.00 0.00 3.06
1411 1497 1.375523 GAAACGGCTGGGTCATCGT 60.376 57.895 0.00 0.00 37.45 3.73
1413 1499 3.642778 AACGGCTGGGTCATCGTCG 62.643 63.158 0.00 0.00 34.60 5.12
1414 1500 4.129737 CGGCTGGGTCATCGTCGT 62.130 66.667 0.00 0.00 0.00 4.34
1415 1501 2.202756 GGCTGGGTCATCGTCGTC 60.203 66.667 0.00 0.00 0.00 4.20
1416 1502 2.711922 GGCTGGGTCATCGTCGTCT 61.712 63.158 0.00 0.00 0.00 4.18
1417 1503 1.381928 GGCTGGGTCATCGTCGTCTA 61.382 60.000 0.00 0.00 0.00 2.59
1418 1504 0.669077 GCTGGGTCATCGTCGTCTAT 59.331 55.000 0.00 0.00 0.00 1.98
1419 1505 1.600663 GCTGGGTCATCGTCGTCTATG 60.601 57.143 0.00 0.00 0.00 2.23
1420 1506 1.001268 CTGGGTCATCGTCGTCTATGG 60.001 57.143 0.00 0.00 0.00 2.74
1425 1511 0.992263 CATCGTCGTCTATGGCGTCG 60.992 60.000 5.06 5.06 40.81 5.12
1426 1512 1.434622 ATCGTCGTCTATGGCGTCGT 61.435 55.000 10.27 0.00 40.47 4.34
1428 1514 1.426621 GTCGTCTATGGCGTCGTCA 59.573 57.895 0.14 0.14 0.00 4.35
1429 1515 0.029035 GTCGTCTATGGCGTCGTCAT 59.971 55.000 17.60 17.60 0.00 3.06
1430 1516 0.306840 TCGTCTATGGCGTCGTCATC 59.693 55.000 16.94 0.95 0.00 2.92
1431 1517 0.992263 CGTCTATGGCGTCGTCATCG 60.992 60.000 16.94 10.50 38.55 3.84
1432 1518 0.029035 GTCTATGGCGTCGTCATCGT 59.971 55.000 16.94 0.00 38.33 3.73
1434 1520 0.992263 CTATGGCGTCGTCATCGTCG 60.992 60.000 16.94 0.00 46.99 5.12
1435 1521 1.708193 TATGGCGTCGTCATCGTCGT 61.708 55.000 16.94 0.00 46.29 4.34
1437 1523 2.097918 GCGTCGTCATCGTCGTCT 59.902 61.111 8.59 0.00 46.29 4.18
1438 1524 1.346197 GCGTCGTCATCGTCGTCTA 59.654 57.895 8.59 0.00 46.29 2.59
1442 1528 1.257415 GTCGTCATCGTCGTCTATCGT 59.743 52.381 0.00 0.00 37.02 3.73
1443 1529 1.520174 TCGTCATCGTCGTCTATCGTC 59.480 52.381 0.00 0.00 37.02 4.20
1445 1531 1.257415 GTCATCGTCGTCTATCGTCGT 59.743 52.381 6.74 0.00 46.88 4.34
1449 1543 3.005341 TCGTCGTCTATCGTCGTCTAT 57.995 47.619 6.74 0.00 46.88 1.98
1451 1545 2.159999 CGTCGTCTATCGTCGTCTATGG 60.160 54.545 0.00 0.00 43.43 2.74
1453 1547 1.462051 CGTCTATCGTCGTCTATGGCG 60.462 57.143 0.00 0.00 34.52 5.69
1454 1548 1.530293 GTCTATCGTCGTCTATGGCGT 59.470 52.381 0.00 0.00 0.00 5.68
1465 1559 1.899814 TCTATGGCGTCAACTTCACCT 59.100 47.619 0.00 0.00 0.00 4.00
1468 1562 0.468226 TGGCGTCAACTTCACCTTCT 59.532 50.000 0.00 0.00 0.00 2.85
1510 1612 4.383602 GGCACGCGCACATTTCGT 62.384 61.111 5.73 0.00 41.24 3.85
1680 1782 2.104331 CCCGAATGTCTCCGACGG 59.896 66.667 7.84 7.84 42.67 4.79
1737 1842 0.676466 TGCTCCGCCAAAGGTACATG 60.676 55.000 0.00 0.00 0.00 3.21
1739 1844 0.392998 CTCCGCCAAAGGTACATGCT 60.393 55.000 0.00 0.00 0.00 3.79
1745 1853 2.610232 GCCAAAGGTACATGCTTTGTGG 60.610 50.000 17.59 9.48 39.48 4.17
1761 1869 4.314740 TTGTGGTTGGTTAATCAAGTGC 57.685 40.909 0.12 0.00 0.00 4.40
1764 1872 3.057526 GTGGTTGGTTAATCAAGTGCCTC 60.058 47.826 0.12 0.00 0.00 4.70
1789 1897 8.002459 TCAAAATAGGAGGAAAAAGTGTTACCT 58.998 33.333 0.00 0.00 0.00 3.08
1835 1943 7.984475 AGTGCATATAGATTTGGGTAATACCA 58.016 34.615 12.03 0.00 41.02 3.25
1852 1961 2.595750 CCATTTGGTTCCTGGGTGTA 57.404 50.000 0.00 0.00 0.00 2.90
1945 2054 1.594331 ACTTGACTTTCCTTCGCACC 58.406 50.000 0.00 0.00 0.00 5.01
1949 2058 0.868406 GACTTTCCTTCGCACCAGTG 59.132 55.000 0.00 0.00 0.00 3.66
1959 2068 2.634600 TCGCACCAGTGTGTAAACTTT 58.365 42.857 10.87 0.00 44.65 2.66
1961 2070 2.353269 CGCACCAGTGTGTAAACTTTCA 59.647 45.455 3.16 0.00 44.65 2.69
1970 2079 6.032042 CAGTGTGTAAACTTTCACGAACAAAC 59.968 38.462 0.00 0.00 37.38 2.93
1972 2081 6.360148 GTGTGTAAACTTTCACGAACAAACAA 59.640 34.615 0.00 0.00 37.38 2.83
1973 2082 6.916387 TGTGTAAACTTTCACGAACAAACAAA 59.084 30.769 0.00 0.00 37.38 2.83
1988 2100 1.675552 ACAAACGTTGACTTCAGGGG 58.324 50.000 0.00 0.00 0.00 4.79
1994 2106 3.562182 ACGTTGACTTCAGGGGAAAAAT 58.438 40.909 0.00 0.00 31.35 1.82
1997 2109 5.414765 ACGTTGACTTCAGGGGAAAAATATC 59.585 40.000 0.00 0.00 31.35 1.63
2002 2114 8.256356 TGACTTCAGGGGAAAAATATCAAAAA 57.744 30.769 0.00 0.00 31.35 1.94
2004 2116 9.725019 GACTTCAGGGGAAAAATATCAAAAATT 57.275 29.630 0.00 0.00 31.35 1.82
2024 2136 7.582667 AAATTATTGCTATTGTAGGGTCACC 57.417 36.000 0.00 0.00 0.00 4.02
2030 2142 3.877508 GCTATTGTAGGGTCACCATTCAC 59.122 47.826 0.00 0.00 40.13 3.18
2040 2152 4.485163 GGTCACCATTCACACTATTTTGC 58.515 43.478 0.00 0.00 0.00 3.68
2045 2157 6.209192 TCACCATTCACACTATTTTGCTCAAT 59.791 34.615 0.00 0.00 0.00 2.57
2046 2158 6.869913 CACCATTCACACTATTTTGCTCAATT 59.130 34.615 0.00 0.00 0.00 2.32
2047 2159 7.385752 CACCATTCACACTATTTTGCTCAATTT 59.614 33.333 0.00 0.00 0.00 1.82
2048 2160 7.933033 ACCATTCACACTATTTTGCTCAATTTT 59.067 29.630 0.00 0.00 0.00 1.82
2049 2161 8.776470 CCATTCACACTATTTTGCTCAATTTTT 58.224 29.630 0.00 0.00 0.00 1.94
2097 2209 4.757019 GGGGGTTTTACTTTTTGTGGAA 57.243 40.909 0.00 0.00 0.00 3.53
2098 2210 5.100344 GGGGGTTTTACTTTTTGTGGAAA 57.900 39.130 0.00 0.00 0.00 3.13
2099 2211 5.498393 GGGGGTTTTACTTTTTGTGGAAAA 58.502 37.500 0.00 0.00 35.94 2.29
2100 2212 5.354792 GGGGGTTTTACTTTTTGTGGAAAAC 59.645 40.000 5.93 5.93 36.83 2.43
2223 2337 8.426489 TGTATATACACCCATAGACCAAAAGTC 58.574 37.037 11.62 0.00 46.71 3.01
2238 2352 7.504926 ACCAAAAGTCCACCTACATATAGAA 57.495 36.000 0.00 0.00 0.00 2.10
2241 2355 9.408648 CCAAAAGTCCACCTACATATAGAATTT 57.591 33.333 0.00 0.00 0.00 1.82
2376 2490 7.274250 GCATTGTAGATGTTGACAGATTTTTCC 59.726 37.037 0.00 0.00 0.00 3.13
2392 2506 9.048446 CAGATTTTTCCACAAACTTGATCAAAT 57.952 29.630 9.88 0.00 0.00 2.32
2436 2554 2.288666 TGCACGCTCTCTTTCAGTTTT 58.711 42.857 0.00 0.00 0.00 2.43
2518 2639 3.967987 CCTACACCTTAACTGGGCTAGAT 59.032 47.826 4.33 0.00 0.00 1.98
2541 2662 3.008835 AGCATGCTTTCTATTCTGCCA 57.991 42.857 16.30 0.00 0.00 4.92
2588 2709 7.715265 AACGTGCAAACTAATATAGAGATGG 57.285 36.000 0.00 0.00 0.00 3.51
2614 2738 0.389025 TGATGACACACGCAGACACT 59.611 50.000 0.00 0.00 0.00 3.55
2676 2801 3.264897 ATCAATGCCGCGCTCGAC 61.265 61.111 5.56 0.00 38.10 4.20
2698 2823 1.540707 ACGAGTTCTTCTTCTCCGTCC 59.459 52.381 0.00 0.00 0.00 4.79
2709 2834 0.834261 TCTCCGTCCCCAATCACACA 60.834 55.000 0.00 0.00 0.00 3.72
2712 2837 0.611200 CCGTCCCCAATCACACACTA 59.389 55.000 0.00 0.00 0.00 2.74
2748 2873 2.017049 GATGCCGTTTATGTCAAGCCT 58.983 47.619 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.292492 TTCTAGCTAGGACGTCATGGA 57.708 47.619 18.12 2.21 0.00 3.41
6 7 3.878103 GAGTGATTCTAGCTAGGACGTCA 59.122 47.826 20.58 10.82 0.00 4.35
7 8 3.251487 GGAGTGATTCTAGCTAGGACGTC 59.749 52.174 20.58 7.13 0.00 4.34
8 9 3.215975 GGAGTGATTCTAGCTAGGACGT 58.784 50.000 20.58 0.00 0.00 4.34
9 10 3.215151 TGGAGTGATTCTAGCTAGGACG 58.785 50.000 20.58 0.00 0.00 4.79
10 11 4.465886 TCTGGAGTGATTCTAGCTAGGAC 58.534 47.826 20.58 11.82 34.59 3.85
11 12 4.797912 TCTGGAGTGATTCTAGCTAGGA 57.202 45.455 20.58 13.11 34.59 2.94
12 13 4.892934 AGTTCTGGAGTGATTCTAGCTAGG 59.107 45.833 20.58 2.51 34.59 3.02
13 14 6.096141 TCAAGTTCTGGAGTGATTCTAGCTAG 59.904 42.308 15.01 15.01 34.59 3.42
14 15 5.952347 TCAAGTTCTGGAGTGATTCTAGCTA 59.048 40.000 0.00 0.00 34.59 3.32
49 50 6.531240 GCAACATCCATACACAAGTTTATTGG 59.469 38.462 0.00 0.00 0.00 3.16
52 53 6.832520 TGCAACATCCATACACAAGTTTAT 57.167 33.333 0.00 0.00 0.00 1.40
53 54 6.619744 CATGCAACATCCATACACAAGTTTA 58.380 36.000 0.00 0.00 0.00 2.01
54 55 5.472148 CATGCAACATCCATACACAAGTTT 58.528 37.500 0.00 0.00 0.00 2.66
55 56 4.618927 GCATGCAACATCCATACACAAGTT 60.619 41.667 14.21 0.00 0.00 2.66
56 57 3.119388 GCATGCAACATCCATACACAAGT 60.119 43.478 14.21 0.00 0.00 3.16
57 58 3.119424 TGCATGCAACATCCATACACAAG 60.119 43.478 20.30 0.00 0.00 3.16
58 59 2.824341 TGCATGCAACATCCATACACAA 59.176 40.909 20.30 0.00 0.00 3.33
59 60 2.444421 TGCATGCAACATCCATACACA 58.556 42.857 20.30 0.00 0.00 3.72
60 61 3.507103 TTGCATGCAACATCCATACAC 57.493 42.857 28.80 0.00 0.00 2.90
82 83 8.717821 GCCGTGCATGTAGATAGAAAATTATTA 58.282 33.333 4.96 0.00 0.00 0.98
83 84 7.445402 AGCCGTGCATGTAGATAGAAAATTATT 59.555 33.333 4.96 0.00 0.00 1.40
84 85 6.936900 AGCCGTGCATGTAGATAGAAAATTAT 59.063 34.615 4.96 0.00 0.00 1.28
85 86 6.202762 CAGCCGTGCATGTAGATAGAAAATTA 59.797 38.462 4.96 0.00 0.00 1.40
88 89 3.871006 CAGCCGTGCATGTAGATAGAAAA 59.129 43.478 4.96 0.00 0.00 2.29
91 92 2.800881 CAGCCGTGCATGTAGATAGA 57.199 50.000 4.96 0.00 0.00 1.98
110 111 0.103208 AGTGCTAGACATAGGCGTGC 59.897 55.000 0.00 0.00 0.00 5.34
111 112 3.181490 TGTTAGTGCTAGACATAGGCGTG 60.181 47.826 0.00 0.00 0.00 5.34
112 113 3.021695 TGTTAGTGCTAGACATAGGCGT 58.978 45.455 0.00 0.00 0.00 5.68
113 114 3.710326 TGTTAGTGCTAGACATAGGCG 57.290 47.619 0.00 0.00 0.00 5.52
114 115 5.420409 AGTTTGTTAGTGCTAGACATAGGC 58.580 41.667 0.00 0.00 0.00 3.93
115 116 8.251721 AGTTAGTTTGTTAGTGCTAGACATAGG 58.748 37.037 0.00 0.00 0.00 2.57
116 117 9.077674 CAGTTAGTTTGTTAGTGCTAGACATAG 57.922 37.037 0.00 0.00 0.00 2.23
117 118 8.799367 TCAGTTAGTTTGTTAGTGCTAGACATA 58.201 33.333 0.00 0.00 0.00 2.29
118 119 7.599245 GTCAGTTAGTTTGTTAGTGCTAGACAT 59.401 37.037 0.00 0.00 0.00 3.06
119 120 6.921857 GTCAGTTAGTTTGTTAGTGCTAGACA 59.078 38.462 0.00 0.00 0.00 3.41
120 121 7.146648 AGTCAGTTAGTTTGTTAGTGCTAGAC 58.853 38.462 0.00 0.00 0.00 2.59
121 122 7.286215 AGTCAGTTAGTTTGTTAGTGCTAGA 57.714 36.000 0.00 0.00 0.00 2.43
122 123 7.948278 AAGTCAGTTAGTTTGTTAGTGCTAG 57.052 36.000 0.00 0.00 0.00 3.42
123 124 7.869429 GGTAAGTCAGTTAGTTTGTTAGTGCTA 59.131 37.037 0.00 0.00 0.00 3.49
124 125 6.704937 GGTAAGTCAGTTAGTTTGTTAGTGCT 59.295 38.462 0.00 0.00 0.00 4.40
125 126 6.346359 CGGTAAGTCAGTTAGTTTGTTAGTGC 60.346 42.308 0.00 0.00 0.00 4.40
126 127 6.919662 TCGGTAAGTCAGTTAGTTTGTTAGTG 59.080 38.462 0.00 0.00 0.00 2.74
127 128 7.042797 TCGGTAAGTCAGTTAGTTTGTTAGT 57.957 36.000 0.00 0.00 0.00 2.24
128 129 8.530269 AATCGGTAAGTCAGTTAGTTTGTTAG 57.470 34.615 0.00 0.00 0.00 2.34
129 130 8.891671 AAATCGGTAAGTCAGTTAGTTTGTTA 57.108 30.769 0.00 0.00 0.00 2.41
130 131 7.797038 AAATCGGTAAGTCAGTTAGTTTGTT 57.203 32.000 0.00 0.00 0.00 2.83
131 132 7.797038 AAAATCGGTAAGTCAGTTAGTTTGT 57.203 32.000 0.00 0.00 0.00 2.83
132 133 8.557029 AGAAAAATCGGTAAGTCAGTTAGTTTG 58.443 33.333 0.00 0.00 0.00 2.93
133 134 8.672823 AGAAAAATCGGTAAGTCAGTTAGTTT 57.327 30.769 0.00 0.00 0.00 2.66
134 135 8.148999 AGAGAAAAATCGGTAAGTCAGTTAGTT 58.851 33.333 0.00 0.00 0.00 2.24
135 136 7.668492 AGAGAAAAATCGGTAAGTCAGTTAGT 58.332 34.615 0.00 0.00 0.00 2.24
136 137 9.074443 GTAGAGAAAAATCGGTAAGTCAGTTAG 57.926 37.037 0.00 0.00 0.00 2.34
137 138 8.800332 AGTAGAGAAAAATCGGTAAGTCAGTTA 58.200 33.333 0.00 0.00 0.00 2.24
138 139 7.668492 AGTAGAGAAAAATCGGTAAGTCAGTT 58.332 34.615 0.00 0.00 0.00 3.16
139 140 7.229581 AGTAGAGAAAAATCGGTAAGTCAGT 57.770 36.000 0.00 0.00 0.00 3.41
140 141 9.804758 ATTAGTAGAGAAAAATCGGTAAGTCAG 57.195 33.333 0.00 0.00 0.00 3.51
146 147 9.374838 GGACAAATTAGTAGAGAAAAATCGGTA 57.625 33.333 0.00 0.00 0.00 4.02
147 148 7.881232 TGGACAAATTAGTAGAGAAAAATCGGT 59.119 33.333 0.00 0.00 0.00 4.69
148 149 8.263940 TGGACAAATTAGTAGAGAAAAATCGG 57.736 34.615 0.00 0.00 0.00 4.18
149 150 7.905493 GCTGGACAAATTAGTAGAGAAAAATCG 59.095 37.037 0.00 0.00 0.00 3.34
150 151 8.184848 GGCTGGACAAATTAGTAGAGAAAAATC 58.815 37.037 0.00 0.00 0.00 2.17
151 152 7.148239 CGGCTGGACAAATTAGTAGAGAAAAAT 60.148 37.037 0.00 0.00 0.00 1.82
152 153 6.148811 CGGCTGGACAAATTAGTAGAGAAAAA 59.851 38.462 0.00 0.00 0.00 1.94
153 154 5.642063 CGGCTGGACAAATTAGTAGAGAAAA 59.358 40.000 0.00 0.00 0.00 2.29
154 155 5.175859 CGGCTGGACAAATTAGTAGAGAAA 58.824 41.667 0.00 0.00 0.00 2.52
155 156 4.755411 CGGCTGGACAAATTAGTAGAGAA 58.245 43.478 0.00 0.00 0.00 2.87
156 157 3.430374 GCGGCTGGACAAATTAGTAGAGA 60.430 47.826 0.00 0.00 0.00 3.10
157 158 2.866762 GCGGCTGGACAAATTAGTAGAG 59.133 50.000 0.00 0.00 0.00 2.43
158 159 2.500098 AGCGGCTGGACAAATTAGTAGA 59.500 45.455 0.00 0.00 0.00 2.59
159 160 2.906354 AGCGGCTGGACAAATTAGTAG 58.094 47.619 0.00 0.00 0.00 2.57
160 161 3.006940 CAAGCGGCTGGACAAATTAGTA 58.993 45.455 1.81 0.00 0.00 1.82
161 162 1.812571 CAAGCGGCTGGACAAATTAGT 59.187 47.619 1.81 0.00 0.00 2.24
162 163 2.083774 TCAAGCGGCTGGACAAATTAG 58.916 47.619 1.81 0.00 0.00 1.73
163 164 2.192664 TCAAGCGGCTGGACAAATTA 57.807 45.000 1.81 0.00 0.00 1.40
164 165 1.474077 GATCAAGCGGCTGGACAAATT 59.526 47.619 9.74 0.00 0.00 1.82
165 166 1.098050 GATCAAGCGGCTGGACAAAT 58.902 50.000 9.74 0.00 0.00 2.32
166 167 0.960364 GGATCAAGCGGCTGGACAAA 60.960 55.000 9.74 0.00 0.00 2.83
167 168 1.377202 GGATCAAGCGGCTGGACAA 60.377 57.895 9.74 0.00 0.00 3.18
180 181 0.464916 AGCAAGCGCATGATGGATCA 60.465 50.000 18.15 0.00 42.27 2.92
234 239 0.465460 AACGGTGCAAGGTGTGATGT 60.465 50.000 0.00 0.00 0.00 3.06
251 256 0.247655 CGTATGATGTGGCGTGCAAC 60.248 55.000 0.00 0.00 0.00 4.17
252 257 1.365368 CCGTATGATGTGGCGTGCAA 61.365 55.000 0.00 0.00 0.00 4.08
260 265 4.811024 AGATGTTAACTGCCGTATGATGTG 59.189 41.667 7.22 0.00 0.00 3.21
275 280 1.044231 TAGGCGGGGCGAGATGTTAA 61.044 55.000 0.00 0.00 0.00 2.01
278 283 3.537874 GTAGGCGGGGCGAGATGT 61.538 66.667 0.00 0.00 0.00 3.06
292 297 5.104735 AGTTTCCAAGAGCATAAGGAGGTAG 60.105 44.000 0.00 0.00 0.00 3.18
293 298 4.783227 AGTTTCCAAGAGCATAAGGAGGTA 59.217 41.667 0.00 0.00 0.00 3.08
298 303 7.148171 CCTTCTAAAGTTTCCAAGAGCATAAGG 60.148 40.741 7.68 0.00 0.00 2.69
299 304 7.607991 TCCTTCTAAAGTTTCCAAGAGCATAAG 59.392 37.037 7.68 0.00 0.00 1.73
300 305 7.458397 TCCTTCTAAAGTTTCCAAGAGCATAA 58.542 34.615 7.68 0.00 0.00 1.90
301 306 7.016153 TCCTTCTAAAGTTTCCAAGAGCATA 57.984 36.000 7.68 0.00 0.00 3.14
302 307 5.880901 TCCTTCTAAAGTTTCCAAGAGCAT 58.119 37.500 7.68 0.00 0.00 3.79
303 308 5.071788 TCTCCTTCTAAAGTTTCCAAGAGCA 59.928 40.000 7.68 0.00 0.00 4.26
305 310 6.014156 TCCTCTCCTTCTAAAGTTTCCAAGAG 60.014 42.308 7.68 5.99 0.00 2.85
306 311 5.844516 TCCTCTCCTTCTAAAGTTTCCAAGA 59.155 40.000 7.68 0.00 0.00 3.02
307 312 6.115448 TCCTCTCCTTCTAAAGTTTCCAAG 57.885 41.667 0.00 0.00 0.00 3.61
309 314 5.510861 CGTTCCTCTCCTTCTAAAGTTTCCA 60.511 44.000 0.00 0.00 0.00 3.53
310 315 4.930405 CGTTCCTCTCCTTCTAAAGTTTCC 59.070 45.833 0.00 0.00 0.00 3.13
311 316 4.389382 GCGTTCCTCTCCTTCTAAAGTTTC 59.611 45.833 0.00 0.00 0.00 2.78
312 317 4.040584 AGCGTTCCTCTCCTTCTAAAGTTT 59.959 41.667 0.00 0.00 0.00 2.66
313 318 3.579151 AGCGTTCCTCTCCTTCTAAAGTT 59.421 43.478 0.00 0.00 0.00 2.66
314 319 3.166679 AGCGTTCCTCTCCTTCTAAAGT 58.833 45.455 0.00 0.00 0.00 2.66
315 320 3.878160 AGCGTTCCTCTCCTTCTAAAG 57.122 47.619 0.00 0.00 0.00 1.85
316 321 3.700038 CCTAGCGTTCCTCTCCTTCTAAA 59.300 47.826 0.00 0.00 0.00 1.85
317 322 3.053842 TCCTAGCGTTCCTCTCCTTCTAA 60.054 47.826 0.00 0.00 0.00 2.10
318 323 2.508716 TCCTAGCGTTCCTCTCCTTCTA 59.491 50.000 0.00 0.00 0.00 2.10
319 324 1.285373 TCCTAGCGTTCCTCTCCTTCT 59.715 52.381 0.00 0.00 0.00 2.85
320 325 1.765230 TCCTAGCGTTCCTCTCCTTC 58.235 55.000 0.00 0.00 0.00 3.46
321 326 2.091555 AGATCCTAGCGTTCCTCTCCTT 60.092 50.000 0.00 0.00 0.00 3.36
322 327 1.497286 AGATCCTAGCGTTCCTCTCCT 59.503 52.381 0.00 0.00 0.00 3.69
323 328 1.989706 AGATCCTAGCGTTCCTCTCC 58.010 55.000 0.00 0.00 0.00 3.71
324 329 3.549221 CGAAAGATCCTAGCGTTCCTCTC 60.549 52.174 0.00 0.00 0.00 3.20
325 330 2.359531 CGAAAGATCCTAGCGTTCCTCT 59.640 50.000 0.00 0.00 0.00 3.69
326 331 2.358267 TCGAAAGATCCTAGCGTTCCTC 59.642 50.000 0.00 0.00 33.31 3.71
327 332 2.376109 TCGAAAGATCCTAGCGTTCCT 58.624 47.619 0.00 0.00 33.31 3.36
328 333 2.865343 TCGAAAGATCCTAGCGTTCC 57.135 50.000 0.00 0.00 33.31 3.62
329 334 3.000971 CGTTTCGAAAGATCCTAGCGTTC 60.001 47.826 11.66 0.00 41.60 3.95
330 335 2.921754 CGTTTCGAAAGATCCTAGCGTT 59.078 45.455 11.66 0.00 41.60 4.84
331 336 2.094854 ACGTTTCGAAAGATCCTAGCGT 60.095 45.455 11.66 11.62 41.60 5.07
332 337 2.527100 ACGTTTCGAAAGATCCTAGCG 58.473 47.619 11.66 10.96 41.60 4.26
333 338 3.771798 AGACGTTTCGAAAGATCCTAGC 58.228 45.455 11.66 0.00 41.60 3.42
334 339 5.031578 CAGAGACGTTTCGAAAGATCCTAG 58.968 45.833 11.66 1.33 41.60 3.02
335 340 4.674623 GCAGAGACGTTTCGAAAGATCCTA 60.675 45.833 11.66 0.00 41.60 2.94
336 341 3.839293 CAGAGACGTTTCGAAAGATCCT 58.161 45.455 11.66 6.30 41.60 3.24
337 342 2.345942 GCAGAGACGTTTCGAAAGATCC 59.654 50.000 11.66 6.33 41.60 3.36
338 343 2.026978 CGCAGAGACGTTTCGAAAGATC 59.973 50.000 11.66 11.66 41.60 2.75
339 344 1.986378 CGCAGAGACGTTTCGAAAGAT 59.014 47.619 11.66 1.75 41.60 2.40
340 345 1.405461 CGCAGAGACGTTTCGAAAGA 58.595 50.000 11.66 0.00 39.20 2.52
341 346 0.179272 GCGCAGAGACGTTTCGAAAG 60.179 55.000 11.66 8.20 34.88 2.62
342 347 1.554042 GGCGCAGAGACGTTTCGAAA 61.554 55.000 10.83 6.47 34.88 3.46
343 348 2.019951 GGCGCAGAGACGTTTCGAA 61.020 57.895 10.83 0.00 34.88 3.71
344 349 2.416244 AAGGCGCAGAGACGTTTCGA 62.416 55.000 10.83 0.00 34.88 3.71
345 350 2.022129 AAGGCGCAGAGACGTTTCG 61.022 57.895 10.83 0.00 34.88 3.46
346 351 1.493311 CAAGGCGCAGAGACGTTTC 59.507 57.895 10.83 0.00 34.88 2.78
347 352 1.961277 CCAAGGCGCAGAGACGTTT 60.961 57.895 10.83 0.00 34.88 3.60
348 353 2.172483 ATCCAAGGCGCAGAGACGTT 62.172 55.000 10.83 0.00 34.88 3.99
349 354 2.650116 ATCCAAGGCGCAGAGACGT 61.650 57.895 10.83 0.00 34.88 4.34
350 355 2.169789 CATCCAAGGCGCAGAGACG 61.170 63.158 10.83 0.00 0.00 4.18
351 356 0.179062 ATCATCCAAGGCGCAGAGAC 60.179 55.000 10.83 0.00 0.00 3.36
352 357 0.543277 AATCATCCAAGGCGCAGAGA 59.457 50.000 10.83 0.00 0.00 3.10
353 358 0.942962 GAATCATCCAAGGCGCAGAG 59.057 55.000 10.83 0.00 0.00 3.35
354 359 0.543277 AGAATCATCCAAGGCGCAGA 59.457 50.000 10.83 0.00 0.00 4.26
355 360 1.386533 AAGAATCATCCAAGGCGCAG 58.613 50.000 10.83 0.00 0.00 5.18
356 361 2.708216 TAAGAATCATCCAAGGCGCA 57.292 45.000 10.83 0.00 0.00 6.09
357 362 2.227388 CCATAAGAATCATCCAAGGCGC 59.773 50.000 0.00 0.00 0.00 6.53
358 363 3.743521 TCCATAAGAATCATCCAAGGCG 58.256 45.455 0.00 0.00 0.00 5.52
359 364 6.469782 TTTTCCATAAGAATCATCCAAGGC 57.530 37.500 0.00 0.00 33.44 4.35
380 385 3.009723 ACGTCGCCTCATCATGATTTTT 58.990 40.909 5.16 0.00 0.00 1.94
381 386 2.632377 ACGTCGCCTCATCATGATTTT 58.368 42.857 5.16 0.00 0.00 1.82
382 387 2.315925 ACGTCGCCTCATCATGATTT 57.684 45.000 5.16 0.00 0.00 2.17
383 388 1.935873 CAACGTCGCCTCATCATGATT 59.064 47.619 5.16 0.00 0.00 2.57
384 389 1.134699 ACAACGTCGCCTCATCATGAT 60.135 47.619 1.18 1.18 0.00 2.45
385 390 0.246360 ACAACGTCGCCTCATCATGA 59.754 50.000 0.00 0.00 0.00 3.07
386 391 0.371301 CACAACGTCGCCTCATCATG 59.629 55.000 0.00 0.00 0.00 3.07
387 392 0.740868 CCACAACGTCGCCTCATCAT 60.741 55.000 0.00 0.00 0.00 2.45
388 393 1.374125 CCACAACGTCGCCTCATCA 60.374 57.895 0.00 0.00 0.00 3.07
389 394 2.100631 CCCACAACGTCGCCTCATC 61.101 63.158 0.00 0.00 0.00 2.92
390 395 2.047274 CCCACAACGTCGCCTCAT 60.047 61.111 0.00 0.00 0.00 2.90
391 396 4.980805 GCCCACAACGTCGCCTCA 62.981 66.667 0.00 0.00 0.00 3.86
392 397 4.681978 AGCCCACAACGTCGCCTC 62.682 66.667 0.00 0.00 0.00 4.70
393 398 3.767630 AAAGCCCACAACGTCGCCT 62.768 57.895 0.00 0.00 0.00 5.52
394 399 3.284449 AAAGCCCACAACGTCGCC 61.284 61.111 0.00 0.00 0.00 5.54
395 400 2.051345 CAAAGCCCACAACGTCGC 60.051 61.111 0.00 0.00 0.00 5.19
396 401 2.637025 CCAAAGCCCACAACGTCG 59.363 61.111 0.00 0.00 0.00 5.12
397 402 2.335011 GCCAAAGCCCACAACGTC 59.665 61.111 0.00 0.00 0.00 4.34
398 403 2.441164 TGCCAAAGCCCACAACGT 60.441 55.556 0.00 0.00 38.69 3.99
399 404 2.336088 CTGCCAAAGCCCACAACG 59.664 61.111 0.00 0.00 38.69 4.10
400 405 2.133641 ACCTGCCAAAGCCCACAAC 61.134 57.895 0.00 0.00 38.69 3.32
401 406 2.132996 CACCTGCCAAAGCCCACAA 61.133 57.895 0.00 0.00 38.69 3.33
402 407 2.521465 CACCTGCCAAAGCCCACA 60.521 61.111 0.00 0.00 38.69 4.17
403 408 3.994853 GCACCTGCCAAAGCCCAC 61.995 66.667 0.00 0.00 38.69 4.61
419 424 7.750145 TGTAAAATTACTACCAGCCCTTTGGC 61.750 42.308 5.05 0.00 44.87 4.52
420 425 5.712917 TGTAAAATTACTACCAGCCCTTTGG 59.287 40.000 5.05 0.00 38.07 3.28
421 426 6.827586 TGTAAAATTACTACCAGCCCTTTG 57.172 37.500 5.05 0.00 34.77 2.77
422 427 6.317893 CGATGTAAAATTACTACCAGCCCTTT 59.682 38.462 5.05 0.00 34.77 3.11
423 428 5.820947 CGATGTAAAATTACTACCAGCCCTT 59.179 40.000 5.05 0.00 34.77 3.95
424 429 5.365619 CGATGTAAAATTACTACCAGCCCT 58.634 41.667 5.05 0.00 34.77 5.19
425 430 4.024302 GCGATGTAAAATTACTACCAGCCC 60.024 45.833 5.05 0.00 34.77 5.19
426 431 4.318546 CGCGATGTAAAATTACTACCAGCC 60.319 45.833 0.00 0.00 34.77 4.85
427 432 4.505191 TCGCGATGTAAAATTACTACCAGC 59.495 41.667 3.71 3.46 34.77 4.85
428 433 5.747197 AGTCGCGATGTAAAATTACTACCAG 59.253 40.000 14.06 0.00 34.77 4.00
429 434 5.653507 AGTCGCGATGTAAAATTACTACCA 58.346 37.500 14.06 0.00 34.77 3.25
430 435 7.684062 TTAGTCGCGATGTAAAATTACTACC 57.316 36.000 14.06 0.00 34.77 3.18
431 436 9.564041 CAATTAGTCGCGATGTAAAATTACTAC 57.436 33.333 14.06 0.00 34.77 2.73
432 437 9.304731 ACAATTAGTCGCGATGTAAAATTACTA 57.695 29.630 14.06 2.09 34.77 1.82
433 438 8.193250 ACAATTAGTCGCGATGTAAAATTACT 57.807 30.769 14.06 3.22 34.77 2.24
434 439 8.816204 AACAATTAGTCGCGATGTAAAATTAC 57.184 30.769 14.06 0.00 0.00 1.89
435 440 9.828852 AAAACAATTAGTCGCGATGTAAAATTA 57.171 25.926 14.06 0.00 0.00 1.40
436 441 8.736751 AAAACAATTAGTCGCGATGTAAAATT 57.263 26.923 14.06 11.12 0.00 1.82
437 442 8.234546 AGAAAACAATTAGTCGCGATGTAAAAT 58.765 29.630 14.06 5.34 0.00 1.82
438 443 7.577979 AGAAAACAATTAGTCGCGATGTAAAA 58.422 30.769 14.06 2.93 0.00 1.52
439 444 7.124347 AGAAAACAATTAGTCGCGATGTAAA 57.876 32.000 14.06 4.90 0.00 2.01
440 445 6.715344 AGAAAACAATTAGTCGCGATGTAA 57.285 33.333 14.06 14.10 0.00 2.41
441 446 6.453265 CGAAGAAAACAATTAGTCGCGATGTA 60.453 38.462 14.06 4.31 0.00 2.29
442 447 5.607119 AAGAAAACAATTAGTCGCGATGT 57.393 34.783 14.06 9.64 0.00 3.06
443 448 4.719164 CGAAGAAAACAATTAGTCGCGATG 59.281 41.667 14.06 8.85 0.00 3.84
444 449 4.724036 GCGAAGAAAACAATTAGTCGCGAT 60.724 41.667 14.06 3.98 34.54 4.58
445 450 3.422603 GCGAAGAAAACAATTAGTCGCGA 60.423 43.478 3.71 3.71 34.54 5.87
446 451 2.832745 GCGAAGAAAACAATTAGTCGCG 59.167 45.455 0.00 0.00 34.54 5.87
447 452 3.805823 TGCGAAGAAAACAATTAGTCGC 58.194 40.909 8.10 8.10 43.22 5.19
448 453 6.359617 ACAAATGCGAAGAAAACAATTAGTCG 59.640 34.615 0.00 0.00 0.00 4.18
449 454 7.623268 ACAAATGCGAAGAAAACAATTAGTC 57.377 32.000 0.00 0.00 0.00 2.59
450 455 7.322699 CGTACAAATGCGAAGAAAACAATTAGT 59.677 33.333 0.00 0.00 35.74 2.24
451 456 7.201232 CCGTACAAATGCGAAGAAAACAATTAG 60.201 37.037 0.00 0.00 35.74 1.73
452 457 6.579292 CCGTACAAATGCGAAGAAAACAATTA 59.421 34.615 0.00 0.00 35.74 1.40
453 458 5.401079 CCGTACAAATGCGAAGAAAACAATT 59.599 36.000 0.00 0.00 35.74 2.32
454 459 4.915085 CCGTACAAATGCGAAGAAAACAAT 59.085 37.500 0.00 0.00 35.74 2.71
455 460 4.283678 CCGTACAAATGCGAAGAAAACAA 58.716 39.130 0.00 0.00 35.74 2.83
456 461 3.850374 GCCGTACAAATGCGAAGAAAACA 60.850 43.478 0.00 0.00 35.74 2.83
457 462 2.655001 GCCGTACAAATGCGAAGAAAAC 59.345 45.455 0.00 0.00 35.74 2.43
458 463 2.350964 GGCCGTACAAATGCGAAGAAAA 60.351 45.455 0.00 0.00 35.74 2.29
459 464 1.198178 GGCCGTACAAATGCGAAGAAA 59.802 47.619 0.00 0.00 35.74 2.52
460 465 0.800012 GGCCGTACAAATGCGAAGAA 59.200 50.000 0.00 0.00 35.74 2.52
461 466 0.320858 TGGCCGTACAAATGCGAAGA 60.321 50.000 0.00 0.00 35.74 2.87
462 467 0.732571 ATGGCCGTACAAATGCGAAG 59.267 50.000 0.00 0.00 35.74 3.79
463 468 1.135546 CAATGGCCGTACAAATGCGAA 60.136 47.619 0.00 0.00 35.74 4.70
464 469 0.449786 CAATGGCCGTACAAATGCGA 59.550 50.000 0.00 0.00 35.74 5.10
465 470 0.449786 TCAATGGCCGTACAAATGCG 59.550 50.000 0.00 0.00 0.00 4.73
466 471 2.859538 CAATCAATGGCCGTACAAATGC 59.140 45.455 0.00 0.00 0.00 3.56
467 472 3.446799 CCAATCAATGGCCGTACAAATG 58.553 45.455 0.00 0.00 43.80 2.32
468 473 3.799281 CCAATCAATGGCCGTACAAAT 57.201 42.857 0.00 0.00 43.80 2.32
479 484 1.747355 GAGGACCACAGCCAATCAATG 59.253 52.381 0.00 0.00 0.00 2.82
480 485 1.679944 CGAGGACCACAGCCAATCAAT 60.680 52.381 0.00 0.00 0.00 2.57
481 486 0.321564 CGAGGACCACAGCCAATCAA 60.322 55.000 0.00 0.00 0.00 2.57
482 487 1.296392 CGAGGACCACAGCCAATCA 59.704 57.895 0.00 0.00 0.00 2.57
483 488 1.450312 CCGAGGACCACAGCCAATC 60.450 63.158 0.00 0.00 0.00 2.67
484 489 1.918293 TCCGAGGACCACAGCCAAT 60.918 57.895 0.00 0.00 0.00 3.16
485 490 2.525629 TCCGAGGACCACAGCCAA 60.526 61.111 0.00 0.00 0.00 4.52
486 491 3.311110 GTCCGAGGACCACAGCCA 61.311 66.667 11.07 0.00 39.08 4.75
494 499 2.825861 TTGTAACAAGGTCCGAGGAC 57.174 50.000 13.61 13.61 43.87 3.85
495 500 3.581332 AGAATTGTAACAAGGTCCGAGGA 59.419 43.478 0.00 0.00 0.00 3.71
496 501 3.933332 GAGAATTGTAACAAGGTCCGAGG 59.067 47.826 0.00 0.00 0.00 4.63
497 502 4.822026 AGAGAATTGTAACAAGGTCCGAG 58.178 43.478 0.00 0.00 0.00 4.63
498 503 4.527038 AGAGAGAATTGTAACAAGGTCCGA 59.473 41.667 0.00 0.00 0.00 4.55
499 504 4.822026 AGAGAGAATTGTAACAAGGTCCG 58.178 43.478 0.00 0.00 0.00 4.79
500 505 8.794335 ATTAAGAGAGAATTGTAACAAGGTCC 57.206 34.615 0.00 0.00 0.00 4.46
526 531 9.434420 CAAGGTAAAAGATTTGGCATTTCATTA 57.566 29.630 0.00 0.00 0.00 1.90
527 532 7.938490 ACAAGGTAAAAGATTTGGCATTTCATT 59.062 29.630 0.00 0.00 0.00 2.57
528 533 7.452562 ACAAGGTAAAAGATTTGGCATTTCAT 58.547 30.769 0.00 0.00 0.00 2.57
529 534 6.825610 ACAAGGTAAAAGATTTGGCATTTCA 58.174 32.000 0.00 0.00 0.00 2.69
530 535 7.728847 AACAAGGTAAAAGATTTGGCATTTC 57.271 32.000 0.00 0.00 0.00 2.17
531 536 7.772757 TGAAACAAGGTAAAAGATTTGGCATTT 59.227 29.630 0.00 0.00 0.00 2.32
532 537 7.278875 TGAAACAAGGTAAAAGATTTGGCATT 58.721 30.769 0.00 0.00 0.00 3.56
533 538 6.825610 TGAAACAAGGTAAAAGATTTGGCAT 58.174 32.000 0.00 0.00 0.00 4.40
534 539 6.227298 TGAAACAAGGTAAAAGATTTGGCA 57.773 33.333 0.00 0.00 0.00 4.92
535 540 7.546778 TTTGAAACAAGGTAAAAGATTTGGC 57.453 32.000 0.00 0.00 0.00 4.52
625 630 2.742053 CCTTCGTTCGTGATCCATTTGT 59.258 45.455 0.00 0.00 0.00 2.83
635 640 1.620413 GGCGGTAACCTTCGTTCGTG 61.620 60.000 0.00 0.00 33.17 4.35
638 643 2.265683 CTTAGGCGGTAACCTTCGTTC 58.734 52.381 0.00 0.00 41.50 3.95
666 673 0.396435 AGGAAACGTCACATGGCAGA 59.604 50.000 0.00 0.00 0.00 4.26
673 680 3.558418 GCAGACTAAAAGGAAACGTCACA 59.442 43.478 0.00 0.00 0.00 3.58
675 682 3.799366 TGCAGACTAAAAGGAAACGTCA 58.201 40.909 0.00 0.00 0.00 4.35
677 684 9.826574 TTATATATGCAGACTAAAAGGAAACGT 57.173 29.630 0.00 0.00 0.00 3.99
758 779 4.354208 TTGAGATACTCCCTTCCTCCTT 57.646 45.455 0.00 0.00 0.00 3.36
760 781 3.775316 TGTTTGAGATACTCCCTTCCTCC 59.225 47.826 0.00 0.00 0.00 4.30
761 782 5.422214 TTGTTTGAGATACTCCCTTCCTC 57.578 43.478 0.00 0.00 0.00 3.71
762 783 4.226168 CCTTGTTTGAGATACTCCCTTCCT 59.774 45.833 0.00 0.00 0.00 3.36
764 785 3.942115 GCCTTGTTTGAGATACTCCCTTC 59.058 47.826 0.00 0.00 0.00 3.46
766 787 2.912956 TGCCTTGTTTGAGATACTCCCT 59.087 45.455 0.00 0.00 0.00 4.20
813 836 1.272212 GGAGGTCCCAAACGTACGTAA 59.728 52.381 23.12 2.30 34.14 3.18
866 891 2.104622 TGAATGTTGAGACAGCCAGACA 59.895 45.455 0.00 0.00 39.58 3.41
867 892 2.771089 TGAATGTTGAGACAGCCAGAC 58.229 47.619 0.00 0.00 39.58 3.51
868 893 3.708403 ATGAATGTTGAGACAGCCAGA 57.292 42.857 0.00 0.00 39.58 3.86
869 894 3.128242 GGAATGAATGTTGAGACAGCCAG 59.872 47.826 0.00 0.00 39.58 4.85
870 895 3.084039 GGAATGAATGTTGAGACAGCCA 58.916 45.455 0.00 0.00 39.58 4.75
871 896 3.084039 TGGAATGAATGTTGAGACAGCC 58.916 45.455 0.00 0.00 39.58 4.85
872 897 3.119708 GGTGGAATGAATGTTGAGACAGC 60.120 47.826 0.00 0.00 39.58 4.40
873 898 3.441572 GGGTGGAATGAATGTTGAGACAG 59.558 47.826 0.00 0.00 39.58 3.51
919 944 3.059461 GGTCTATCTCGAGCTAGTTCGTG 60.059 52.174 25.33 22.90 41.22 4.35
920 945 3.132925 GGTCTATCTCGAGCTAGTTCGT 58.867 50.000 25.33 11.56 41.22 3.85
921 946 2.481185 GGGTCTATCTCGAGCTAGTTCG 59.519 54.545 21.48 21.48 41.79 3.95
922 947 2.815503 GGGGTCTATCTCGAGCTAGTTC 59.184 54.545 19.79 14.53 0.00 3.01
923 948 2.175069 TGGGGTCTATCTCGAGCTAGTT 59.825 50.000 19.79 1.07 0.00 2.24
924 949 1.775459 TGGGGTCTATCTCGAGCTAGT 59.225 52.381 19.79 4.37 0.00 2.57
925 950 2.039216 TCTGGGGTCTATCTCGAGCTAG 59.961 54.545 15.64 15.64 0.00 3.42
926 951 2.055579 TCTGGGGTCTATCTCGAGCTA 58.944 52.381 7.81 0.85 0.00 3.32
927 952 0.847373 TCTGGGGTCTATCTCGAGCT 59.153 55.000 7.81 0.00 0.00 4.09
928 953 1.917872 ATCTGGGGTCTATCTCGAGC 58.082 55.000 7.81 0.00 0.00 5.03
970 1005 3.774216 AGCTAGGTTTCTGAGCTTCTGAT 59.226 43.478 0.00 0.00 44.08 2.90
1071 1110 2.203337 AAGCTTTGCGCCTGGACA 60.203 55.556 4.18 0.00 40.39 4.02
1170 1247 1.649664 AGAAGACGCATGAGCATGAC 58.350 50.000 14.27 5.03 41.20 3.06
1188 1268 1.541379 CCGGGGTTAAGGTTTGGAAG 58.459 55.000 0.00 0.00 0.00 3.46
1189 1269 0.540133 GCCGGGGTTAAGGTTTGGAA 60.540 55.000 2.18 0.00 0.00 3.53
1264 1350 1.667722 GTACTCCCCGTTCACCGTT 59.332 57.895 0.00 0.00 33.66 4.44
1324 1410 3.171828 ATGGTTGGTGACGCGGACA 62.172 57.895 12.47 7.72 0.00 4.02
1394 1480 1.375523 GACGATGACCCAGCCGTTT 60.376 57.895 0.00 0.00 35.22 3.60
1405 1491 0.306840 GACGCCATAGACGACGATGA 59.693 55.000 9.30 0.00 32.28 2.92
1411 1497 0.306840 GATGACGACGCCATAGACGA 59.693 55.000 0.00 0.00 33.85 4.20
1413 1499 0.029035 ACGATGACGACGCCATAGAC 59.971 55.000 10.90 0.00 42.66 2.59
1414 1500 0.306840 GACGATGACGACGCCATAGA 59.693 55.000 10.90 0.00 42.66 1.98
1415 1501 2.784712 GACGATGACGACGCCATAG 58.215 57.895 0.00 0.00 42.66 2.23
1434 1520 1.530293 ACGCCATAGACGACGATAGAC 59.470 52.381 0.00 0.00 41.38 2.59
1435 1521 1.797046 GACGCCATAGACGACGATAGA 59.203 52.381 0.00 0.00 41.38 1.98
1437 1523 1.585297 TGACGCCATAGACGACGATA 58.415 50.000 0.00 0.00 0.00 2.92
1438 1524 0.736636 TTGACGCCATAGACGACGAT 59.263 50.000 0.00 0.00 0.00 3.73
1442 1528 1.542472 TGAAGTTGACGCCATAGACGA 59.458 47.619 0.00 0.00 0.00 4.20
1443 1529 1.654105 GTGAAGTTGACGCCATAGACG 59.346 52.381 0.00 0.00 0.00 4.18
1444 1530 2.000447 GGTGAAGTTGACGCCATAGAC 59.000 52.381 0.00 0.00 37.78 2.59
1445 1531 1.899814 AGGTGAAGTTGACGCCATAGA 59.100 47.619 0.00 0.00 39.99 1.98
1449 1543 0.468226 AGAAGGTGAAGTTGACGCCA 59.532 50.000 0.00 0.00 39.99 5.69
1451 1545 1.149148 GGAGAAGGTGAAGTTGACGC 58.851 55.000 0.00 0.00 0.00 5.19
1453 1547 1.608283 CCCGGAGAAGGTGAAGTTGAC 60.608 57.143 0.73 0.00 0.00 3.18
1454 1548 0.685097 CCCGGAGAAGGTGAAGTTGA 59.315 55.000 0.73 0.00 0.00 3.18
1506 1600 1.216977 CCATAGACGGTGGCACGAA 59.783 57.895 12.17 0.00 37.61 3.85
1680 1782 5.449999 CCAGGAAGCCCATTTATCGTAAAAC 60.450 44.000 0.00 0.00 33.88 2.43
1737 1842 4.744631 CACTTGATTAACCAACCACAAAGC 59.255 41.667 0.00 0.00 0.00 3.51
1739 1844 4.442192 GGCACTTGATTAACCAACCACAAA 60.442 41.667 0.00 0.00 0.00 2.83
1745 1853 4.846779 TTGAGGCACTTGATTAACCAAC 57.153 40.909 0.00 0.00 41.55 3.77
1764 1872 8.178313 AGGTAACACTTTTTCCTCCTATTTTG 57.822 34.615 0.00 0.00 41.41 2.44
1809 1917 9.106977 TGGTATTACCCAAATCTATATGCACTA 57.893 33.333 10.37 0.00 37.50 2.74
1810 1918 7.984475 TGGTATTACCCAAATCTATATGCACT 58.016 34.615 10.37 0.00 37.50 4.40
1811 1919 8.807948 ATGGTATTACCCAAATCTATATGCAC 57.192 34.615 10.37 0.00 37.50 4.57
1812 1920 9.821240 AAATGGTATTACCCAAATCTATATGCA 57.179 29.630 10.37 0.00 37.50 3.96
1835 1943 6.584471 TGTATATACACCCAGGAACCAAAT 57.416 37.500 11.62 0.00 0.00 2.32
1945 2054 5.211266 TGTTCGTGAAAGTTTACACACTG 57.789 39.130 14.42 5.71 36.91 3.66
1949 2058 6.914760 TTGTTTGTTCGTGAAAGTTTACAC 57.085 33.333 7.65 7.65 0.00 2.90
1959 2068 3.186817 AGTCAACGTTTGTTTGTTCGTGA 59.813 39.130 0.00 0.00 35.72 4.35
1961 2070 3.817148 AGTCAACGTTTGTTTGTTCGT 57.183 38.095 0.00 0.00 35.72 3.85
1970 2079 1.961793 TCCCCTGAAGTCAACGTTTG 58.038 50.000 0.00 0.00 0.00 2.93
1972 2081 2.721425 TTTCCCCTGAAGTCAACGTT 57.279 45.000 0.00 0.00 0.00 3.99
1973 2082 2.721425 TTTTCCCCTGAAGTCAACGT 57.279 45.000 0.00 0.00 0.00 3.99
1997 2109 9.301153 GTGACCCTACAATAGCAATAATTTTTG 57.699 33.333 4.44 4.44 0.00 2.44
2002 2114 6.260700 TGGTGACCCTACAATAGCAATAAT 57.739 37.500 0.00 0.00 0.00 1.28
2004 2116 5.904984 ATGGTGACCCTACAATAGCAATA 57.095 39.130 0.00 0.00 0.00 1.90
2005 2117 4.796110 ATGGTGACCCTACAATAGCAAT 57.204 40.909 0.00 0.00 0.00 3.56
2007 2119 3.521531 TGAATGGTGACCCTACAATAGCA 59.478 43.478 0.00 0.00 0.00 3.49
2008 2120 3.877508 GTGAATGGTGACCCTACAATAGC 59.122 47.826 0.00 0.00 0.00 2.97
2009 2121 4.876107 GTGTGAATGGTGACCCTACAATAG 59.124 45.833 0.00 0.00 0.00 1.73
2010 2122 4.534500 AGTGTGAATGGTGACCCTACAATA 59.466 41.667 0.00 0.00 0.00 1.90
2011 2123 3.330701 AGTGTGAATGGTGACCCTACAAT 59.669 43.478 0.00 0.00 0.00 2.71
2013 2125 2.334977 AGTGTGAATGGTGACCCTACA 58.665 47.619 0.00 0.00 0.00 2.74
2014 2126 4.755266 ATAGTGTGAATGGTGACCCTAC 57.245 45.455 0.00 0.00 0.00 3.18
2015 2127 5.772393 AAATAGTGTGAATGGTGACCCTA 57.228 39.130 0.00 0.00 0.00 3.53
2016 2128 4.657814 AAATAGTGTGAATGGTGACCCT 57.342 40.909 0.00 0.00 0.00 4.34
2017 2129 4.618227 GCAAAATAGTGTGAATGGTGACCC 60.618 45.833 0.00 0.00 0.00 4.46
2018 2130 4.218417 AGCAAAATAGTGTGAATGGTGACC 59.782 41.667 0.00 0.00 0.00 4.02
2076 2188 4.757019 TTCCACAAAAAGTAAAACCCCC 57.243 40.909 0.00 0.00 0.00 5.40
2077 2189 6.174760 AGTTTTCCACAAAAAGTAAAACCCC 58.825 36.000 0.00 0.00 38.53 4.95
2212 2326 6.901300 TCTATATGTAGGTGGACTTTTGGTCT 59.099 38.462 0.00 0.00 43.97 3.85
2223 2337 8.881262 ACCTAGGAAAATTCTATATGTAGGTGG 58.119 37.037 17.98 0.00 0.00 4.61
2225 2339 9.670442 TGACCTAGGAAAATTCTATATGTAGGT 57.330 33.333 17.98 0.00 0.00 3.08
2376 2490 8.871862 TCAAGTCAAAATTTGATCAAGTTTGTG 58.128 29.630 28.17 24.09 42.47 3.33
2392 2506 5.300752 TGGCAGTTTTGTTTCAAGTCAAAA 58.699 33.333 0.00 0.00 39.93 2.44
2436 2554 8.009622 ACCATATGTCATGTCATTGCATTTAA 57.990 30.769 10.71 0.00 0.00 1.52
2482 2603 5.878406 AGGTGTAGGGTCATTAAGATCTG 57.122 43.478 0.00 0.00 0.00 2.90
2491 2612 2.844348 CCCAGTTAAGGTGTAGGGTCAT 59.156 50.000 0.00 0.00 0.00 3.06
2518 2639 4.949238 TGGCAGAATAGAAAGCATGCTTAA 59.051 37.500 32.12 20.59 34.84 1.85
2541 2662 5.999205 TTACAAATCCATGACATTGGCTT 57.001 34.783 0.00 0.00 36.66 4.35
2588 2709 0.025001 GCGTGTGTCATCATGTACGC 59.975 55.000 12.81 12.81 42.08 4.42
2614 2738 2.158667 GGGTTCCACCTTCAGTCTGAAA 60.159 50.000 15.97 0.00 38.64 2.69
2676 2801 1.197264 ACGGAGAAGAAGAACTCGTCG 59.803 52.381 0.00 0.00 37.59 5.12
2682 2807 0.974383 TGGGGACGGAGAAGAAGAAC 59.026 55.000 0.00 0.00 0.00 3.01
2683 2808 1.724545 TTGGGGACGGAGAAGAAGAA 58.275 50.000 0.00 0.00 0.00 2.52
2698 2823 2.677836 CGATGGTTAGTGTGTGATTGGG 59.322 50.000 0.00 0.00 0.00 4.12
2709 2834 0.731417 CGACCTCGACGATGGTTAGT 59.269 55.000 16.63 1.70 43.02 2.24
2712 2837 3.991999 TCGACCTCGACGATGGTT 58.008 55.556 16.63 4.95 44.22 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.