>input_sequence_69764
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
GGCCATGGTTATCTCCTCCGGTGTTCAAGCTCCTTGCTCTCTCCTCATGGCAACCTTGATGCTGCTCATTGTCCAGGCGC
AAAGCTTCACCAGGCACTACAATTTCAATGTAT----GTGTGCCACAGAT---------------------TTA----CG
CATGCGTTTCCGGCCGTAAGCTATC------T---TGCTTTCTCACGTCATGCTCATG--C-GTCTTCTTCCAAACCTTA
AC---CCCG---GCATATGCAGGTGCAAATGGCCAACGTGACGAGGCTGTGCGCCACCAAGAGCATCGTAACGGTGAACG
GGGAGTACCCCGGCCCGGCGCTCGTGGCGAGGGAAGGCGGCCGCGTCGTTGTCCGCGTCACCAACCATGTCGCGCGCGCA
CAACATGACGCTGCACTGGCACGGCGTCCGGCAGCTGCGAAACGGCTGGGTCATCGTCGTCTATGGCGTCGTCATCGTCG
TCTATCGTCGT--------CTATGGCGTCAACTTCACCTTCTCCGGGCAGCGTGGCACGCTGTGGTGGCACGCGCACATT
T--------CGTGCCACCGTCTATGGCGTCATCGTCGTCCTTCCCAAGCACGGCGTGCCTTACCCGTTCGCCGCGCCGCA
CATGGAGGTTCCGGTCATCTTCGGTGAATGGTGGAGGGCGGACACGGAGGCGGTGCTCAGCCAGGCGCTCCAGACGGGCG
GACCCCCGAATGTCTCCGACGGTTTTACGATAAATGGGCTTCCTGGGCCACTGTACAAC---TGCTCCGCCAAAGGTACA
TGCT---TTGTGGTTGGTTAA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr4A_1_TraesCS4A01G358300
CGTCCATGACGTCCTAGCTAGAATCACTCCAGAACTTGACCGGCCACTACCAATAAACTTGTGTATGGATGTTGCATGCA
ACTAATAATTTTCTATCTACATGCACGGCTGCACGCCTATGTCTAGCACTAACAAACTAACTGACTTACCGATTTTTCTC
TACTAATTTGTCCAGCCGCTTGATCCATCATGCGCTTGCTTGCCG----TCGGCAGTGCTGCATCGCACAACACCACGAC
ATCACACCTTGCACCGTTGCACGCCACATCATACGGCAGTTAACATCTCGCCCCGCCTACCTCCTTATGCTCTTGGAAAC
TTTAGAAGGAGAGGAACGCTAGGATCTTTCGAAACGTCTCTGCGCCTTGGATGATTCTTATGGAAAAAATCATGATGAGG
CGACGTTGTGGGCTTTGGCAGGTGCCAAAGGGCTGGTAGTAATTTTACATCGCGACTAATTGTTTTCTTCGCATTTGTAC
GGCCATTGATTGGCTGTGGTCCTCGGACCTTGTTACAATTCTCTCTTAATTAATGAAATGCCAAATCTTTTACCTTGTTT
CAAAAAACAAACAAATATGCAAATACAAGTAGTAATCAAGATAAAGCTAACATATATATAGTTCATCCAACAAATGGATC
ACGAACGAAGGTTACCGCCT--AAGCTGCGTATCTGCCATGTGACGTTTCC--------------TTTTAGTCTGCATAT
ATAAGTTGTCCAAAGTCAAACTTTGTAAAGAAAATAAATTTTATACATGGAGTGAAAAAAGGAGGAA--GGGAGTATCTC
AAACAAGGCAAGGCAAATGGCCCGGCCAGTACGTGTTACGTACGTTTGGGACCTCCAGCAGATA--ATATATAAACTCAC
CCCAAGTGCCTGTCTGGCTGTCTCAACATTCATTCCACCCTCCATCACCTGGATCGTACCCTCCACGAACTAGC------
----TCGAGATAGACCCCAGATTTTCCTTATCAAAAAGGAAAAAATCAGAAGCTCAGAAACCTAG----CTAAAAGCTAT
GGCCATGGTTATCTCCTCCGGTGTTCAAGCTCCTTGCTCTCTCCTCATGGCAACCTTGATGCTGCTCATTGTCCAGGCGC
AAAGCTTCACCAGGCACTACAATTTCAATGTAT----GTGTGCCACAGAT---------------------TTA----CG
CATGCGTTTCCGGCCGTAAGCTATC------T---TGCTTTCTCACGTCATGCTCATG--C-GTCTTCTTCCAAACCTTA
AC---CCCG---GCATATGCAGGTGCAAATGGCCAACGTGACGAGGCTGTGCGCCACCAAGAGCATCGTAACGGTGAACG
GGGAGTACCCCGGCCCGGCGCTCGTGGCGAGGGAAGGCGGCCGCGTCGTTGTCCGCGTCACCAACCATGTCGCGCGCGCA
CAACATGACGCTGCACTGGCACGGCGTCCGGCAGCTGCGAAACGGCTGGGTCATCGTCGTCTATGGCGTCGTCATCGTCG
TCTATCGTCGT--------CTATGGCGTCAACTTCACCTTCTCCGGGCAGCGTGGCACGCTGTGGTGGCACGCGCACATT
T--------CGTGCCACCGTCTATGGCGTCATCGTCGTCCTTCCCAAGCACGGCGTGCCTTACCCGTTCGCCGCGCCGCA
CATGGAGGTTCCGGTCATCTTCGGTGAATGGTGGAGGGCGGACACGGAGGCGGTGCTCAGCCAGGCGCTCCAGACGGGCG
GACCCCCGAATGTCTCCGACGGTTTTACGATAAATGGGCTTCCTGGGCCACTGTACAAC---TGCTCCGCCAAAGGTACA
TGCT---TTGTGGTTGGTTAATCAAGTGCCTCAAAATAGGAGGAAAAAGTGTTACCTTTTTGTTACTAAAATAATATAGT
GCATATAGATTTGGGTAATACCATTTGG-TTCCTGGGTGTATATACACCACATATGTGGGAAAAATAATAAATAAAATAA
AAGTCAAAAAAGTTAGAAGTTATTTTTAGAATAAACTTGACTTTCCTTCGCACCAGTGTGTAAACTTTCACGAACAAACA
AAC---GTTGACTTCAGGGGAAAAATATCAAAAATTATTGCTATTGTAGGGTCACCATTCACACTATTTTGCTCAATTTT
TTTGTTTTTTTCTAAAAGAAGTCAACGGGGGGTTTTACTTTTTGTGGAAAACTTTTTTACAAGTACAATTGAAGGTCAAT
TTTATTTAAAAAT--ATTTTCAGAATTTTTGACTTTTTATTTAATTACTAAATATTTTTGCCATATAGGGTGTATATACA
CCCATAGACCAAAAGTCCACCTACATATAGAATTTTCCTAGGTCAAGTTTTATTAAGTTTGTAGAAAAAATATAAATATT
TAAAATACCAAATAGACATGACATAAAAATGTATTTCATGATGAATCTAATGGTCTTGATTTGGCATTGTAGATGTTGAC
AGATTTTTCCACAAACTTGATCAAATTTTGACTTGAAACAAAACTGCCAT----GCACGCTCTCTTTCAGTTTTTAAATG
---CAATGACATGACATATGGTAATAAGAAGTAATCTACTAGCAGATCTTAATGACCCTACACCTTAACTGGGCTAGATT
AAGCATGCTTTCTATTCTGCCAAGCCAATGTCATGGATTTGTAAAACGTGCAAACTAATATAGAGATGGCGTACATGATG
ACAC---ACGCAGACACTTTCAGACTGAAGGTGGAACCCGGGAAA-CGTACATGCTGCGCCTCATCAATGCCGCGCTCGA
CGACGAGTTCTTCTTCTCCGTCCCCAATCACACACTAACCATCGTCGAGGTCGATGCCGTTTATGTCAAGCCTTTCAC
>chr5B_16
---------------AGCTAGAATCACTCCAGAACTTGACCGGCCACTATCAC---------------------------
------AAATTCCTCTCTACAAGCACGCCTA-------------------------------------------------
--------TGTCCAGCCGCTCGATCCATCATGCGCGTGCTTGCCGCTTTTCGGCAGTGCTGCATCGCACAACACCACGGC
ATCGCACCT--------TGCACGCTACATCATACGGCAGCTAGCATCTCGCCCCGCTGACCTATGCTAGTGGTA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CGGCCA----GTGGCACGTACGTTAGGGACCTCCAGTAGATAT-------------AC
CCCAAGTGCC--------TGTCTCAACATTCATTCCACCCTCCATCACCTGGATCGTACCCTC----------C------
----TCGAGATAGACCCCAGATTTTCCTTATCAAAAAGGAAAAACTCAGAAGCTCAGAAACCACCTAAAAGCT-AGCTAT
GTCCATGGTTATCTCCTCCGTTCTCCCAGCTCCTTGCTCTCTCCTCATGGCAACCTTGATGCTGCTCATCGTCCAGGCGC
AAAGCTTCACCAGGCACTACAATTTCAATGTAT----GTGTACCACAGGT---------------------CTATGCATG
CATGCGTTTCCGGCCGTACGCACGCTATCTTT---TGCTTTCTCACATCATGCTCATGATG-CGTCTTCTCCAAACCTTG
AC---CCCG---GC--ATGCAGGTGCAAATGGCGAACGTGACGAGGCTGTGCGCCACCAAGAGCATCGTGACGGTGAACG
GGGAGTACCCCGGCCCGGCGCTCGTGGCGAGGGAAGGCGACCGCGTCGCCGTCCGCGTCACCAACCACGT----CGCGCA
CAACATGACGCTGCACTGGCACGGCGTCCGGCAGCTGCGGAACGGCTGGGCCGACGGGCCGGCGTACGTCACCCAGTGCC
CGATCCGGACGGGCCAGACCTACGTCTACAACTTCACCGTCCTCGGGCAGCGTGGCACGCTGTGGTGGCACGCGCACATC
TCCTGGCTACGCGCCACCGTCTATGGCGCCATTGTCATCCTCCCCAAGCACGGCGTGCCTTACCCGTTCGCCGCGCCGCA
CATGGAGGTTCCGGTCATCTTCGGTGAATGGTGGAAGGCGGACACGGAGGCGGTGGTCAGCCAGGCGCTCCAGACGGGCG
GATCCCCGAATGTCTCCGACGCTTTTACAATAAATGGGCTCCCTGGGCCGCTCTACAAC---TGCTCTGCCCAAGGTACG
GACATGCTTGTGCTTGGTTAATCAAGTGTCTAAAAATAGGAGGAAAAAGTGTTACC-TTTTGTTACTAAATTAATA----
--ATATAGATTTGGGTAATACCCTTTGGGTTCCTGGGTGTGTATACACCACATATGAGGGAAAAATAATAAAT-AAATAA
AAGTCAAAAAAGTTGGAAGTTATTTTTAGAATAAACTTGACTTTCTTTTGCACTAGTATGTAAACTTCCGCGAACAAAAA
GGCAGTGTTGACTTCAGGGCAAAAAAATAAAAACTATTGCTACTATAT--GTCACTATTCATACTATTTTGGTCAAAAAA
-TTGTTTTTTTCTAAAAGAAGTCAACGA-GGGTTTTACTTTTTGTAGATTT-TTTTTTACAAGTACAATGGAAGGTCAAT
TTTATTTTAAAAAACATTTTCAATTTTTTTGACTTTTTATTTAGTTACTAAATATTTTTGCCATATAGGGTGTATATACA
CCCATCGACCAAAAGTTCCCCTCCATATAGATTTGTCCTAGGTCAAGTTCTATTAAGTTTGTAGAAAAAATGTAAATATT
TACAATACCAAATATATATGACATAAAAATGTATTTCATGATGAATCTAATGGTCTTGATTTGGCATTGTAGATGTTGAC
AGATTTTTCTACAAACTTGATCAAAATTTGACTTGAAACAAAACTGCCATGCATGCACGCTCTCTTTCAGTTTCTAAATG
CAACAATGACATGACATATGGTAATAAGAAGTAATCTACTAGTAGATCTTAGTGACCCTACACCTTAACTGGGCTAGACT
AAGCATGCTTTCTATTCTGCCTAGCCAATGTCATGGATTTGTAAAACGTGCAAACTAATATAGAGATGACGTACATGATG
ACACACTACGCAGACACATTCAGACTGAAGGTGGAACCCGGGAAAACGTACATGCTGCGCCTCATCAATGCCGCGCTCGA
TGACGAACTCTTCTTCTCCGTCGCCAATCACACGCTCACCATCGTCGAGGTCGATGCCGTTTATGTCAAGCCCTTCAC
>chr5D_565
AAAGCA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AATATGCAAATACAAT---TAATCAAGATTAAGCTAACAGATAA----TTCATCCAGCAAATGGATT
ACAAACGAAGGTTACCGCCTACAAGCTGCGTACCTGCCAAGCGCGACCATGTACTCCCTACGTGTTTTTAGTCTGTATGT
AAAATTTGTCAGAAATCAAGGTTCATAAAGAACACAAATTTTATACACGGAGTAAAAAGAAACGAAGGGGGGAGTATCTC
AAACA----------AATGGCCCGGCCA----GTGGTACGTACGTTTGGGACCTCCAGTAGAGAT-ATATATAAACTCAC
CCCAGGTGCC--------TGTCTCAACATTCATTCAACCCTCCATCACCTGGATCGTACCCTC----------CACGAGC
TAGCTCGAGATAGACCCCAAATTTTCCTTATCAAAAAGGATGAACTCAGAAACTCACTAGGTCAGAAACCTAAAAGCTAT
GTCCATGGTTATCTCCTCCGGTCTTCCAGCTCCTTGCTCTCTCCTCATGGCAACCTTGATGCTGCTCATCGTCCAGGCGC
AAAGCTTCACTAGGCACTACAATTTCAATGTATATATGTCTGCCACAGAT---------------------TTAT-----
-------------------GCTATC------T---TGCTTTCTCACATCATTCTCATGATG-CGTCTTC--CAAACCTTA
AC---CCCG---GC--ATGCAGGTGCAAATGGCCAACGTGACGAGGCTGTGCGCCACCAAGAGCATCGTGACGGTGAACG
GGGAGTACCCCGGCCCGGCGCTCGTGGCGAGGGAAGGCGACCGCGTCGTCGTCCGCGTCACCAACCACGT----CGCGCA
CAACATGACGCTGCACTGGCACGGCGTCCGGCAGCTGCGGAACGGCTGGGCCGACGGGACGGCGTACGTCACGCAGTGCC
CGATCCAGACGGGCCAGAGCTACGTCTACAACTTCACCGTCACCGGACAGCGTGGCACGCTGTGGTGGCACGCGCACATC
TCCTGGCTACGCGCCACCGTCCACGGCGCCATTGTCGTCCTCCCCAAGCACGGCGTGCCTTACCCGTTTGCCGCGCCGCA
CATGGAGGTTCCGGTCATCTTGGGTGAATGGTGGAGGGCGGACACGGAGGCGGTCATCACCCGGGCGCTTCACACAGGTG
GACCCTCGGATGTCTCCGATGCTTATACCATAAATGGGCTTCCCGGGCCGCTCTACAACGACTGCTGCGCCAAAGGTAC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr7A_820
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACGTTTGGGACCTCCTGTTCAGCACATATATATACTCAG
CCGAAGTGCT--------TGTCTCAACATTCATTCCACCCTCCATCATCTTGTCCTCTGCTCCT---------CAAGAGC
TGCCTCAAGATA----------------------------------CAGAAGCTCAAAAGGAGTAC-------AAGCTAT
GGCCATGGCTATCTCCTATGGCCTTCCAGCTCCGTGCTCTCTCCTCATGGCGACCCTGCTGCTGCTCATCGTCCAAGCCC
AGAGCGTCACCAGGCACTACAATTTCAACGTAT----GTCCACA----------------ATTCTTCCATCTTC----TG
CATGCATTTGCGGTCATCATCTTGATCTGATCACATTAATTCATGCATGGTGCTCGAGCTC-GTCTTGATCGAAACCTTA
ATACGTCTGCATGC--ATGCAGGTGCAAATGGCGAATGTGACGAGGCTGTGCGGCACCAAGAGCATAGTGACGGTGAACG
GGGAGTACCCCGGCCCGGCGCTGCTGGCGAGGGAAGGCGACCGCGTCGTCGTCCGCGTCACCAACCGCGT----CGCCCA
CAACGTGACGCTGCACTGGCACGGCATCCGCCAGCTGCGGACCGGCTGGGCCGACGGGCCGGCGTACGTCACGCAGTGCC
CCATCCAGACGGGTCAGAGCTACGTCTACGACTTCACCGTCACCGGGCAGCGCGGCACGCTGTGGTGGCACGCGCACATC
TCCTGGCTGCGCGCCACCGTCTACGGCGCCATCATCATCCTCCCCAAGCACGGCGTGCCTTACCCGTTCGCTGCGCCGCA
CAAAGAGGTCCCGGTGGTCTTCGGCGAGTGGTGGAAGGCCGACACGGAGGCGGTGGTCAGGCAGGCGCTTCGGACGGGCG
GAGCACCCAACATCTCCGACGCTTTCACGATCAACGGGCTCCCTGGGCCGCTCTACAAT---TGCTCTGCCAAAGGTAC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr7A_974
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AGAAGCTCAAAAGACCAC-------AAAGCTAT
GGCCATGGCTATCTCCTCCGGCCTTCCGGCTCCGTGCTCCCTCCTCATGGCGACCCTGCTGCTGCTCATCGTCCAAGCCC
AGAGCGTCACCAGACACTACAATTTCAATGTAT----GTCCACA----------------ATTCTTCCATCTTC----TG
CATGCATTTCCGGCCATCATCTTGATCTGATCACATTAATTCATGCATGGTGCTCGAGCTC-GTCTTGATCGAAACCTTA
CC---TCTGCATGC--ATGCAGGTGCAAATGGCGAATGTGACGAGGCTGTGCGGGACCAAGAGCATCGTGACGGTGAACG
GGGAGTACCCCGGCCCGACGCTGCTGGCGAGGGAAGGCGACCGCGTCGTCGTCCGCGTCACCAACCGCGT----CGCGCA
CAACGTCACGCTGCACTGGCACGGCGTCCGGCAGCTGCGGAGCGGCTGGGCCGACGGGCCGGCGTACGTCACGCAGTGCC
CCATCCAGACGGGTCGGAGCTACGTCTACGACTTCACCGTCACCGGGCAGCGTGGCACGCTGTGGTGGCACGCGCACATC
TCCTGGCTGCGCGCCACCGTCTACGGCGCCATCATCATCCTCCCCAAGCACGGCGTGCCTTACCCGTTCGTCGCGCCGCA
CAAGGAGGTCCCGGTCGTCTTCGGCGAGTGGTGGAAGGCTGACACGGAAGCGGTGGTCAGGCAGGCGCTTCGGACGGGCG
GAGCACCGAATATCTCCGACGCTTTCACGATCGACGGACTACCTGGGCCGCTCTACAAC---TGCTCCGCCAAAGGTAC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr7D_990
AGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TAC-------AAGCTAT
GGCCATGGCTATCTGCTCTGGCCTTCCTGCTCCGTGCTCTCTCCTCTTGGCAACCCTGCTGCTGCTCATCGTCCAAGCGC
AGAGCGTCACCAGACACTACGATTTCAATGTAT----GTCCACA----------------GTTCATTTCATCTAGT----
------------------ATCTTGATTTGATCACATCCTTGCATGCATGGCGTTCGCCTTGACCACG-------------
CC---TCTGCATGC--ACGCAGGTGCAAATGGCGAACGTGACGAGGCTGTGCGGCACCAAGAGCATCGTGACGGTGAACG
GGGAGTACCCCGGCCCGGCGCTGGTGGCGAGGGAAGGCGACCGCGTCGTCGTCCGCGTCACCAACCGCGT----CGCGCA
CAACGTGACGCTGCACTGGCACGGCATCCGCCAGCTGCGCACCGGCTGGGCCGACGGCCCGGCCTACGTCACGCAGTGCC
CCATCCAGACGGGCCAGAGCTACGTCTACGACTTCACCGTCACCGCGCAGCGCGGCACGCTGTGGTGGCACGCGCACATC
TCCTGGCTGCGCGCCACCGTCTACGGCGCCATCATCATCCTCCCCAAGCACGGCGTGCCTTACCCGTTCCCCGCGCCGCA
CAAGGAGGTCCCCGTCGTCTTCGGCGAGTGGTGGAGGGCCGACACGGAGGCGGTGGTCAGGCAGGCGCTCCGGACGGGCG
GAGCACCCAATATCTCCGACGCTTTCACCATCAACGGGCTCCCTGGGCCGCTCTACAAC---TGCTCTGCCAAAGGTAC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr2A_995
AAACTC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
GACCATGGCGATTTCCTCCCGTCTTCCGGCTCCATGCTCTCTCCTCATGGCGACTCTCATGCTACTCATCGTCCAGGCAC
AAAGCATCACTAGGCACTACGATTTCAATGTAC----GTATATATGCACGT-ACGTCCGCATTCATCTATGTTC----TA
CATGCATTT-------------------------------TCTCACATGGACGGG----GATCGTCTTC--ATAACCTTG
ATCTC------------TGCAGGTGCAAATGGCGAACGTGACGAGGCTGTGCGCCAGCAAGAGCATCGTGACGGTGAACG
GGGAGTACCCCGGCCCGACGCTGGTGGCGAGGGAGGGCGATCGCGTGCTCGTCCGCGTCACCAACCACGT----AGCGCA
CAACATGACGCTGCACTGGCACGGCATCCGGCAGCTGCGGAGCGGCTGGGCCGACGGGCCGGCGTACGTCACGCAGTGCC
CGATTCAGACGGGCCAGAGCTACGTCTACAACTTCACCGTCACCGGGCAGCGCGGCACACTCTGGTGGCACGCGCACATC
TCCTGGCTACGCGCCACCGTCTACGGCGTCATCGTCATCCTTCCCAAGCTCGGCGTGCTTTACCCCTTCGTTGCGCCACA
CAAGGAAGTTCCAGTTCTCTTCGGTGAGTGGTGGAGGGCGGACACGGAGGCACTGGTCAGCCAGGCGCTCCGGACGGGCG
GCGCCCCAAATATCTCAGACGCTTTCACCATCAATGGCCTCCCTGGGCCGCTATACAAC---TGCTCCGCTAAAGGTACA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr2D_1002
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
GGCCATGGCGATTTCCTCCCGTCTTCCGGCTGCTTGCTCTCTCCTCATGGCGACTCTGATGCTGCTCATCGTTCAGGCAC
AGAGCATCACTAGACGCTACGATTTCAATGTAA----GTATTATATGTATACACGTCCACATTCATCTATGCTC----TG
CATGCATTTCCGGGCGTG-------------CACCTGATTTCTCACATGGATGGGGTTTGATCGTCTTC--CAAACCTTG
ATCTC------------TGCAGGTGCAAATGGCGAACGTGACGAGGCTGTGCGCCAGCAAGAGCATCGTGACGGTGAACG
GGGAGTACCCCGGCCCGACGCTGGTGGCGAGGGAGGGCGATCGCGTGCTCGTCCGCGTCACCAACCACGT----CGCGCA
CAACATGACGCTGCACTGGCACGGCATTCGGCAGCTGCGGAGCGGCTGGGCCGACGGGCCGGCGTACGTTACGCAGTGCC
CGATTCAGACGGGCCAGAGCTACGTCTACAACTTCACCGTCGCCGGGCAGCGCGGCACGCTGTGGTGGCACGCGCACATC
TCCTGGCTACGCGCCACCGTATACGGCGCCATCGTCATCCTCCCCAAGCTCGGCGTGCCTTACCCGTTCGTTGCGCCGCA
CAAGGAACTTCCTCTTCTCTTCGGCGAGTGGTGGAGGGCGGACACGGAGGCATTGATCAGCCAGGCGCTCCGGACGGGCG
GCGCCCCAAACATCTCAGACGCTTTCACCATCAATGGCCTCCCTGGGCCGCTATACAAC---AGCTCCGCTAAAGGTACA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr2A_1213
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TGCAGGTGCAAATGGCGAACGTGACGAGGCTGTGCGCCAGCAAGAGCGTTGTGACGGTGAACG
GGGAGTACCCCGGCCCGACGCTGGTGGCGAGGGAGGGCGACCGCGTGCTCGTCCGCGTCACCAACCGCGT----AGCGCA
CAACATGACGCTGCACTGGCACGGTATCCGGCAGCTGCGGAGCGGCTGGGCCGACGGGCCGGCGTACGTTACGCAGTGCC
CGATTCAGACGGGCCAGAGCTACGTCTACAACTTCACCGTCGCCGGGCAGCGCGGCACGCTGTGGTGGCACGCGCACATC
TCCTGGCTACGCGCCACCGTATACGGCGCCATCGTCATCCTCCCCAAGCTCGGCGTGCCTTACCCGTTCGTTGCGCCGCA
CAAGGAAGTTCCTCTTCTCTTCGGCGAGTGGTGGAGGGCGGACACAGAGGCGGTGGTCAGCCAGGCGCTCCGGACGGGCG
GCGCCCCAAACATCTCAGATGCTTTCACCATCAATGGCCTTCCTGGGCCGCTATACAAC---TGCTCCGCTAAAGGTACA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr2B_1213
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TGCAGGTGCAAATGGCGAACGTGACGAGGCTGTGCGCCAGCAAGAGCATCGTGACGGTGAACG
GGGAGTACCCCGGCCCCACGCTGGTGGCGCGGGAGGGCGACCGCGTGCTCGTCCGCGTCACCAACCACGT----GGCGCA
CAACATGACGCTGCACTGGCACGGCATTCGGCAGCTGCGGAGCGGCTGGGCCGACGGGCCGGCGTACGTCACGCAGTGCC
CGATTCAGACGGGCCAGAGCTACGTCTACAACTTCACCATCACCGGGCAGCGCGGCACGCTGTGGTGGCACGCGCACATC
TCCTGGCTACGCGCCACCGTATACGGGGCCATCGTCATCCTCCCCAAACTCGGCGTGCCTTACCCGTTCGTTGCGCCCCA
CAAGGAAGTTCCAGTTCTCTTCGGCGAGTGGTGGAGGGCGGACACGGAGGCACTGGTCAACCAGGCGCTCCGGACGGGCG
GCGCCCCAAACATCTCAGACGCTTTCACCATCAATGGGCTCCCTGGGCCACTATACAAC---TGCTCCGCCAACGGTACA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>SNPs
S-S---SSSSSSSSS----------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--S--S--S------S-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------------S--------------S------------------------------------------S-
---S-----SSSSSSSS-------S--------------S--S-------------SS----SSSSSS-SSS-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS---------------SSSS----------S---------S---SSSSS--------S---------S
--S-----------------------------S------S-S-SSSSSSSS------------------------S--S-
-S--S-----SS--S----SS--SS-------S-S------------S-----S----S-SSS-S-S-------------
-----SSSSSSSSSS-------------SSSS---S----------------------S---------------------
----------SSSSSSSS---------------------------------------------SSSSSSSSSS-------
--------------------------------------------S-----------------S-----------------
----------------------S---S------------------------------------------S----------
------------------------------------------------------------------------------S-
----------------------------------------------S--------------------SS-----------
--------------SS-----------------------------------------------------S----------
---------------------------------------S---------S-----------------S--SSSS------
---------------------------------------S----------S-SS--S-SSSSSSSS----SS-SSSSS-S
S-SS---SSSS-----------S-S-SS----------S--S-------------------------------------S
-----------S--------------------------------------------------------------------
-------------------------------------------------------S------------------------
---------------------S------------------------------S---------------------------
-S-S--------S---------------S--S------------------------S-------------S-----SSSS
SS--------------------S-----------------S---------------S----------------S------
--------------S------------------------------S--S----S---S---------S-S--------S-
SS-----------------S-----S--S----S-SS-SSSSS-SSSSSS-----S-----S---------S----SSSS
S--------------------------SS----------------S--SSSS-----------------S----------
-------S----S---------SSS------------------S------------------------------------
-----S----------S-S---S--------S--S--------------S---------------------S--------
--S-----------S-S---------------------------------------------------------------
---------S---------------S-----------------------------------------------S------
------------------------------------------S--------S--------------------------S-
---------------------S----------------------------------------------S-----------
-----------------S--------------------------------------------------------------
S-----SS--------------S----------S--S-----------------------------------S-----
>forward_54
----------------------------------CTTGACCGGCCACTACCAAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_1499
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GTCTATGGCGTCGTCATCGT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>forward_128
--------------------------------------------------------------------------------
----------------------------CTGCACGCCTATGTCTAGCA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_1500
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TCTATGGCGTCGTCATCGTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>forward_130
--------------------------------------------------------------------------------
------------------------------GCACGCCTATGTCTAGCACT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_1543
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TGGCGTCAACTTCACCTTCT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>forward_1515
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GTCGTCTATGGCGTCGTCAT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_2709
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GCGTACATGATG
ACACACGC------------------------------------------------------------------------
------------------------------------------------------------------------------
