Multiple sequence alignment - TraesCS4A01G344200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G344200 chr4A 100.000 3709 0 0 1 3709 624120271 624123979 0.000000e+00 6850
1 TraesCS4A01G344200 chr4A 77.542 895 183 6 1015 1891 584272906 584273800 1.180000e-144 523
2 TraesCS4A01G344200 chr4A 84.943 352 40 4 2883 3233 624134814 624135153 9.860000e-91 344
3 TraesCS4A01G344200 chr4A 92.857 84 5 1 3232 3315 624122290 624122372 1.810000e-23 121
4 TraesCS4A01G344200 chr4A 92.857 84 5 1 2020 2102 624123502 624123585 1.810000e-23 121
5 TraesCS4A01G344200 chr5B 95.092 1467 61 5 744 2203 686469708 686471170 0.000000e+00 2300
6 TraesCS4A01G344200 chr5B 90.523 1129 64 26 2199 3313 686471326 686472425 0.000000e+00 1452
7 TraesCS4A01G344200 chr5B 85.901 993 114 8 952 1920 2562629 2561639 0.000000e+00 1035
8 TraesCS4A01G344200 chr5B 90.361 498 37 5 106 601 686469215 686469703 0.000000e+00 643
9 TraesCS4A01G344200 chr5B 90.476 84 7 1 3232 3315 686470987 686471069 3.920000e-20 110
10 TraesCS4A01G344200 chr5A 86.165 983 111 9 952 1912 2110552 2111531 0.000000e+00 1038
11 TraesCS4A01G344200 chr5D 85.554 983 117 9 952 1912 2671282 2670303 0.000000e+00 1005
12 TraesCS4A01G344200 chr3B 83.704 988 132 13 952 1911 720834113 720833127 0.000000e+00 905
13 TraesCS4A01G344200 chr3B 85.600 375 48 4 3316 3689 373519488 373519857 4.490000e-104 388
14 TraesCS4A01G344200 chr3B 86.408 309 40 2 3313 3620 717653131 717653438 1.650000e-88 337
15 TraesCS4A01G344200 chr2D 87.595 395 42 6 3316 3709 286001850 286001462 5.650000e-123 451
16 TraesCS4A01G344200 chr2D 83.291 395 39 17 3316 3709 625145225 625144857 4.590000e-89 339
17 TraesCS4A01G344200 chr2D 88.561 271 28 3 3316 3585 523167305 523167573 3.570000e-85 326
18 TraesCS4A01G344200 chr4B 86.364 396 42 9 3316 3709 115374347 115374732 4.430000e-114 422
19 TraesCS4A01G344200 chr6B 84.848 396 47 8 3316 3709 700383454 700383838 1.620000e-103 387
20 TraesCS4A01G344200 chr7B 84.328 402 49 11 3316 3709 673656822 673657217 7.520000e-102 381
21 TraesCS4A01G344200 chr3D 83.544 395 38 10 3316 3709 276912557 276912189 9.860000e-91 344


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G344200 chr4A 624120271 624123979 3708 False 2364.00 6850 95.238 1 3709 3 chr4A.!!$F3 3708
1 TraesCS4A01G344200 chr4A 584272906 584273800 894 False 523.00 523 77.542 1015 1891 1 chr4A.!!$F1 876
2 TraesCS4A01G344200 chr5B 686469215 686472425 3210 False 1126.25 2300 91.613 106 3315 4 chr5B.!!$F1 3209
3 TraesCS4A01G344200 chr5B 2561639 2562629 990 True 1035.00 1035 85.901 952 1920 1 chr5B.!!$R1 968
4 TraesCS4A01G344200 chr5A 2110552 2111531 979 False 1038.00 1038 86.165 952 1912 1 chr5A.!!$F1 960
5 TraesCS4A01G344200 chr5D 2670303 2671282 979 True 1005.00 1005 85.554 952 1912 1 chr5D.!!$R1 960
6 TraesCS4A01G344200 chr3B 720833127 720834113 986 True 905.00 905 83.704 952 1911 1 chr3B.!!$R1 959

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
729 732 0.178903 TCACCCTAGGACACTTGGCT 60.179 55.0 11.48 0.0 38.16 4.75 F
1375 1398 0.034896 GTTCCTCAAGAAGGCCGACA 59.965 55.0 0.00 0.0 45.78 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2671 2894 0.107945 GAGGGCAACAGCTACCTGAG 60.108 60.0 0.0 0.0 41.77 3.35 R
2939 3164 0.172578 TGGGTAGAAGTGACGCATCG 59.827 55.0 0.0 0.0 35.10 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.547171 AAGGGGAAGGTTGGACGAA 58.453 52.632 0.00 0.00 0.00 3.85
19 20 0.400594 AAGGGGAAGGTTGGACGAAG 59.599 55.000 0.00 0.00 0.00 3.79
23 24 0.685660 GGAAGGTTGGACGAAGGAGT 59.314 55.000 0.00 0.00 0.00 3.85
24 25 1.897802 GGAAGGTTGGACGAAGGAGTA 59.102 52.381 0.00 0.00 0.00 2.59
27 28 3.611766 AGGTTGGACGAAGGAGTAATG 57.388 47.619 0.00 0.00 0.00 1.90
28 29 2.236395 AGGTTGGACGAAGGAGTAATGG 59.764 50.000 0.00 0.00 0.00 3.16
29 30 2.629051 GTTGGACGAAGGAGTAATGGG 58.371 52.381 0.00 0.00 0.00 4.00
30 31 2.235402 GTTGGACGAAGGAGTAATGGGA 59.765 50.000 0.00 0.00 0.00 4.37
32 33 2.500098 TGGACGAAGGAGTAATGGGAAG 59.500 50.000 0.00 0.00 0.00 3.46
33 34 2.158943 GGACGAAGGAGTAATGGGAAGG 60.159 54.545 0.00 0.00 0.00 3.46
34 35 2.764572 GACGAAGGAGTAATGGGAAGGA 59.235 50.000 0.00 0.00 0.00 3.36
36 37 3.585732 ACGAAGGAGTAATGGGAAGGAAA 59.414 43.478 0.00 0.00 0.00 3.13
37 38 4.192317 CGAAGGAGTAATGGGAAGGAAAG 58.808 47.826 0.00 0.00 0.00 2.62
39 40 4.576330 AGGAGTAATGGGAAGGAAAGTG 57.424 45.455 0.00 0.00 0.00 3.16
40 41 4.175962 AGGAGTAATGGGAAGGAAAGTGA 58.824 43.478 0.00 0.00 0.00 3.41
41 42 4.601857 AGGAGTAATGGGAAGGAAAGTGAA 59.398 41.667 0.00 0.00 0.00 3.18
42 43 5.074515 AGGAGTAATGGGAAGGAAAGTGAAA 59.925 40.000 0.00 0.00 0.00 2.69
43 44 5.416013 GGAGTAATGGGAAGGAAAGTGAAAG 59.584 44.000 0.00 0.00 0.00 2.62
44 45 6.200878 AGTAATGGGAAGGAAAGTGAAAGA 57.799 37.500 0.00 0.00 0.00 2.52
45 46 6.794534 AGTAATGGGAAGGAAAGTGAAAGAT 58.205 36.000 0.00 0.00 0.00 2.40
46 47 5.990120 AATGGGAAGGAAAGTGAAAGATG 57.010 39.130 0.00 0.00 0.00 2.90
47 48 4.722526 TGGGAAGGAAAGTGAAAGATGA 57.277 40.909 0.00 0.00 0.00 2.92
48 49 5.060427 TGGGAAGGAAAGTGAAAGATGAA 57.940 39.130 0.00 0.00 0.00 2.57
49 50 5.454062 TGGGAAGGAAAGTGAAAGATGAAA 58.546 37.500 0.00 0.00 0.00 2.69
50 51 5.301805 TGGGAAGGAAAGTGAAAGATGAAAC 59.698 40.000 0.00 0.00 0.00 2.78
51 52 5.279006 GGGAAGGAAAGTGAAAGATGAAACC 60.279 44.000 0.00 0.00 0.00 3.27
52 53 5.536538 GGAAGGAAAGTGAAAGATGAAACCT 59.463 40.000 0.00 0.00 0.00 3.50
53 54 6.040955 GGAAGGAAAGTGAAAGATGAAACCTT 59.959 38.462 0.00 0.00 36.84 3.50
54 55 7.230712 GGAAGGAAAGTGAAAGATGAAACCTTA 59.769 37.037 0.00 0.00 34.77 2.69
55 56 7.511959 AGGAAAGTGAAAGATGAAACCTTAC 57.488 36.000 0.00 0.00 0.00 2.34
56 57 7.060421 AGGAAAGTGAAAGATGAAACCTTACA 58.940 34.615 0.00 0.00 0.00 2.41
57 58 7.725844 AGGAAAGTGAAAGATGAAACCTTACAT 59.274 33.333 0.00 0.00 0.00 2.29
58 59 8.360390 GGAAAGTGAAAGATGAAACCTTACATT 58.640 33.333 0.00 0.00 0.00 2.71
59 60 9.750125 GAAAGTGAAAGATGAAACCTTACATTT 57.250 29.630 0.00 0.00 0.00 2.32
238 239 9.573166 TGCTAGGCACTTTTCATTTGTATATAT 57.427 29.630 0.00 0.00 41.75 0.86
292 293 1.059584 TCTGGGCTGGTTCTGGTTCA 61.060 55.000 0.00 0.00 0.00 3.18
301 302 0.804989 GTTCTGGTTCATCGCCCTTG 59.195 55.000 0.00 0.00 0.00 3.61
302 303 0.960364 TTCTGGTTCATCGCCCTTGC 60.960 55.000 0.00 0.00 0.00 4.01
303 304 2.361104 TGGTTCATCGCCCTTGCC 60.361 61.111 0.00 0.00 0.00 4.52
305 306 2.044946 GTTCATCGCCCTTGCCCT 60.045 61.111 0.00 0.00 0.00 5.19
312 315 2.690510 GCCCTTGCCCTCCTCTCT 60.691 66.667 0.00 0.00 0.00 3.10
334 337 0.831307 CCCTCCCTCCTTCCTTTACG 59.169 60.000 0.00 0.00 0.00 3.18
353 356 1.120795 GCCCTCTCCATCTAGCTGCT 61.121 60.000 7.57 7.57 0.00 4.24
400 403 1.238439 CAACATCAACTCCGGTGCTT 58.762 50.000 0.00 0.00 0.00 3.91
429 432 3.618690 AGCAGGTACCATGTTCTTCTC 57.381 47.619 15.94 0.00 0.00 2.87
447 450 2.118683 CTCGTCCTCGTCTCTACTACG 58.881 57.143 0.00 0.00 41.64 3.51
555 558 1.152694 TGAAAACCAGGCTGCAGCT 60.153 52.632 35.82 20.32 41.70 4.24
557 560 2.151049 GAAAACCAGGCTGCAGCTGG 62.151 60.000 35.67 35.67 41.71 4.85
601 604 3.240171 GCTAAGCTTACTCGCGACTTTAC 59.760 47.826 3.71 0.00 34.40 2.01
602 605 3.572604 AAGCTTACTCGCGACTTTACT 57.427 42.857 3.71 0.00 34.40 2.24
604 607 3.243336 AGCTTACTCGCGACTTTACTTG 58.757 45.455 3.71 0.00 34.40 3.16
605 608 3.057736 AGCTTACTCGCGACTTTACTTGA 60.058 43.478 3.71 0.00 34.40 3.02
606 609 3.858238 GCTTACTCGCGACTTTACTTGAT 59.142 43.478 3.71 0.00 0.00 2.57
607 610 5.032863 GCTTACTCGCGACTTTACTTGATA 58.967 41.667 3.71 0.00 0.00 2.15
608 611 5.686397 GCTTACTCGCGACTTTACTTGATAT 59.314 40.000 3.71 0.00 0.00 1.63
609 612 6.345093 GCTTACTCGCGACTTTACTTGATATG 60.345 42.308 3.71 0.00 0.00 1.78
610 613 4.360563 ACTCGCGACTTTACTTGATATGG 58.639 43.478 3.71 0.00 0.00 2.74
611 614 4.097437 ACTCGCGACTTTACTTGATATGGA 59.903 41.667 3.71 0.00 0.00 3.41
612 615 5.196341 TCGCGACTTTACTTGATATGGAT 57.804 39.130 3.71 0.00 0.00 3.41
613 616 6.016527 ACTCGCGACTTTACTTGATATGGATA 60.017 38.462 3.71 0.00 0.00 2.59
614 617 6.920817 TCGCGACTTTACTTGATATGGATAT 58.079 36.000 3.71 0.00 0.00 1.63
615 618 6.806739 TCGCGACTTTACTTGATATGGATATG 59.193 38.462 3.71 0.00 0.00 1.78
616 619 6.586463 CGCGACTTTACTTGATATGGATATGT 59.414 38.462 0.00 0.00 0.00 2.29
617 620 7.116376 CGCGACTTTACTTGATATGGATATGTT 59.884 37.037 0.00 0.00 0.00 2.71
618 621 9.419297 GCGACTTTACTTGATATGGATATGTTA 57.581 33.333 0.00 0.00 0.00 2.41
624 627 9.725019 TTACTTGATATGGATATGTTAAGCAGG 57.275 33.333 0.00 0.00 0.00 4.85
625 628 7.977818 ACTTGATATGGATATGTTAAGCAGGA 58.022 34.615 0.00 0.00 0.00 3.86
626 629 7.880195 ACTTGATATGGATATGTTAAGCAGGAC 59.120 37.037 0.00 0.00 0.00 3.85
627 630 6.711277 TGATATGGATATGTTAAGCAGGACC 58.289 40.000 0.00 0.00 0.00 4.46
628 631 3.857157 TGGATATGTTAAGCAGGACCC 57.143 47.619 0.00 0.00 0.00 4.46
629 632 2.441750 TGGATATGTTAAGCAGGACCCC 59.558 50.000 0.00 0.00 0.00 4.95
630 633 2.711547 GGATATGTTAAGCAGGACCCCT 59.288 50.000 0.00 0.00 0.00 4.79
631 634 3.908103 GGATATGTTAAGCAGGACCCCTA 59.092 47.826 0.00 0.00 29.64 3.53
632 635 4.262938 GGATATGTTAAGCAGGACCCCTAC 60.263 50.000 0.00 0.00 29.64 3.18
633 636 2.337359 TGTTAAGCAGGACCCCTACT 57.663 50.000 0.00 0.00 29.64 2.57
634 637 2.185387 TGTTAAGCAGGACCCCTACTC 58.815 52.381 0.00 0.00 29.64 2.59
635 638 2.225547 TGTTAAGCAGGACCCCTACTCT 60.226 50.000 0.00 0.00 29.64 3.24
636 639 2.838813 GTTAAGCAGGACCCCTACTCTT 59.161 50.000 0.00 0.00 29.64 2.85
637 640 2.046280 AAGCAGGACCCCTACTCTTT 57.954 50.000 0.00 0.00 29.64 2.52
638 641 2.046280 AGCAGGACCCCTACTCTTTT 57.954 50.000 0.00 0.00 29.64 2.27
639 642 1.630878 AGCAGGACCCCTACTCTTTTG 59.369 52.381 0.00 0.00 29.64 2.44
640 643 1.351350 GCAGGACCCCTACTCTTTTGT 59.649 52.381 0.00 0.00 29.64 2.83
641 644 2.876079 GCAGGACCCCTACTCTTTTGTG 60.876 54.545 0.00 0.00 29.64 3.33
642 645 1.985895 AGGACCCCTACTCTTTTGTGG 59.014 52.381 0.00 0.00 28.47 4.17
643 646 1.982958 GGACCCCTACTCTTTTGTGGA 59.017 52.381 0.00 0.00 0.00 4.02
644 647 2.374170 GGACCCCTACTCTTTTGTGGAA 59.626 50.000 0.00 0.00 0.00 3.53
645 648 3.181437 GGACCCCTACTCTTTTGTGGAAA 60.181 47.826 0.00 0.00 0.00 3.13
646 649 4.508584 GGACCCCTACTCTTTTGTGGAAAT 60.509 45.833 0.00 0.00 0.00 2.17
647 650 5.074746 ACCCCTACTCTTTTGTGGAAATT 57.925 39.130 0.00 0.00 0.00 1.82
648 651 4.832823 ACCCCTACTCTTTTGTGGAAATTG 59.167 41.667 0.00 0.00 0.00 2.32
649 652 5.076873 CCCCTACTCTTTTGTGGAAATTGA 58.923 41.667 0.00 0.00 0.00 2.57
650 653 5.538433 CCCCTACTCTTTTGTGGAAATTGAA 59.462 40.000 0.00 0.00 0.00 2.69
651 654 6.041523 CCCCTACTCTTTTGTGGAAATTGAAA 59.958 38.462 0.00 0.00 0.00 2.69
652 655 7.256296 CCCCTACTCTTTTGTGGAAATTGAAAT 60.256 37.037 0.00 0.00 0.00 2.17
653 656 7.599998 CCCTACTCTTTTGTGGAAATTGAAATG 59.400 37.037 0.00 0.00 0.00 2.32
654 657 6.849588 ACTCTTTTGTGGAAATTGAAATGC 57.150 33.333 0.00 0.00 0.00 3.56
655 658 5.759763 ACTCTTTTGTGGAAATTGAAATGCC 59.240 36.000 0.00 0.00 0.00 4.40
656 659 4.749099 TCTTTTGTGGAAATTGAAATGCCG 59.251 37.500 0.00 0.00 0.00 5.69
657 660 2.077413 TGTGGAAATTGAAATGCCGC 57.923 45.000 0.00 0.00 0.00 6.53
658 661 1.342496 TGTGGAAATTGAAATGCCGCA 59.658 42.857 0.00 0.00 34.10 5.69
659 662 2.028294 TGTGGAAATTGAAATGCCGCAT 60.028 40.909 0.00 0.00 32.60 4.73
660 663 2.604462 GTGGAAATTGAAATGCCGCATC 59.396 45.455 6.27 0.00 0.00 3.91
661 664 2.496871 TGGAAATTGAAATGCCGCATCT 59.503 40.909 6.27 0.00 0.00 2.90
662 665 3.698539 TGGAAATTGAAATGCCGCATCTA 59.301 39.130 6.27 0.00 0.00 1.98
663 666 4.202040 TGGAAATTGAAATGCCGCATCTAG 60.202 41.667 6.27 0.00 0.00 2.43
664 667 4.202050 GGAAATTGAAATGCCGCATCTAGT 60.202 41.667 6.27 0.00 0.00 2.57
665 668 4.989279 AATTGAAATGCCGCATCTAGTT 57.011 36.364 6.27 0.00 0.00 2.24
666 669 4.989279 ATTGAAATGCCGCATCTAGTTT 57.011 36.364 6.27 0.00 0.00 2.66
667 670 3.763097 TGAAATGCCGCATCTAGTTTG 57.237 42.857 6.27 0.00 0.00 2.93
668 671 3.342719 TGAAATGCCGCATCTAGTTTGA 58.657 40.909 6.27 0.00 0.00 2.69
669 672 3.374988 TGAAATGCCGCATCTAGTTTGAG 59.625 43.478 6.27 0.00 0.00 3.02
670 673 2.988010 ATGCCGCATCTAGTTTGAGA 57.012 45.000 0.00 0.00 0.00 3.27
671 674 2.760634 TGCCGCATCTAGTTTGAGAA 57.239 45.000 0.00 0.00 0.00 2.87
672 675 3.266510 TGCCGCATCTAGTTTGAGAAT 57.733 42.857 0.00 0.00 0.00 2.40
673 676 4.400529 TGCCGCATCTAGTTTGAGAATA 57.599 40.909 0.00 0.00 0.00 1.75
674 677 4.371786 TGCCGCATCTAGTTTGAGAATAG 58.628 43.478 0.00 0.00 0.00 1.73
675 678 3.185391 GCCGCATCTAGTTTGAGAATAGC 59.815 47.826 0.00 0.00 0.00 2.97
676 679 4.626042 CCGCATCTAGTTTGAGAATAGCT 58.374 43.478 0.00 0.00 0.00 3.32
677 680 5.773575 CCGCATCTAGTTTGAGAATAGCTA 58.226 41.667 0.00 0.00 0.00 3.32
678 681 6.393990 CCGCATCTAGTTTGAGAATAGCTAT 58.606 40.000 0.00 0.00 0.00 2.97
679 682 6.870965 CCGCATCTAGTTTGAGAATAGCTATT 59.129 38.462 18.92 18.92 0.00 1.73
680 683 7.386299 CCGCATCTAGTTTGAGAATAGCTATTT 59.614 37.037 19.77 10.07 0.00 1.40
681 684 9.411801 CGCATCTAGTTTGAGAATAGCTATTTA 57.588 33.333 19.77 7.53 0.00 1.40
684 687 9.936759 ATCTAGTTTGAGAATAGCTATTTAGGC 57.063 33.333 19.77 7.51 0.00 3.93
685 688 9.148879 TCTAGTTTGAGAATAGCTATTTAGGCT 57.851 33.333 19.77 12.09 43.02 4.58
686 689 9.202273 CTAGTTTGAGAATAGCTATTTAGGCTG 57.798 37.037 19.77 3.00 40.52 4.85
687 690 6.484977 AGTTTGAGAATAGCTATTTAGGCTGC 59.515 38.462 19.77 5.78 40.52 5.25
688 691 5.815233 TGAGAATAGCTATTTAGGCTGCT 57.185 39.130 19.77 10.37 40.52 4.24
689 692 6.179906 TGAGAATAGCTATTTAGGCTGCTT 57.820 37.500 19.77 0.00 40.52 3.91
690 693 6.226787 TGAGAATAGCTATTTAGGCTGCTTC 58.773 40.000 19.77 4.54 40.52 3.86
691 694 6.179906 AGAATAGCTATTTAGGCTGCTTCA 57.820 37.500 19.77 0.00 40.52 3.02
692 695 6.777782 AGAATAGCTATTTAGGCTGCTTCAT 58.222 36.000 19.77 0.00 40.52 2.57
693 696 7.230027 AGAATAGCTATTTAGGCTGCTTCATT 58.770 34.615 19.77 0.00 40.52 2.57
694 697 7.390162 AGAATAGCTATTTAGGCTGCTTCATTC 59.610 37.037 19.77 6.43 40.52 2.67
695 698 4.140536 AGCTATTTAGGCTGCTTCATTCC 58.859 43.478 0.00 0.00 38.73 3.01
696 699 3.885297 GCTATTTAGGCTGCTTCATTCCA 59.115 43.478 0.00 0.00 0.00 3.53
697 700 4.261363 GCTATTTAGGCTGCTTCATTCCAC 60.261 45.833 0.00 0.00 0.00 4.02
698 701 2.877097 TTAGGCTGCTTCATTCCACA 57.123 45.000 0.00 0.00 0.00 4.17
699 702 3.370840 TTAGGCTGCTTCATTCCACAT 57.629 42.857 0.00 0.00 0.00 3.21
700 703 1.760192 AGGCTGCTTCATTCCACATC 58.240 50.000 0.00 0.00 0.00 3.06
701 704 1.284198 AGGCTGCTTCATTCCACATCT 59.716 47.619 0.00 0.00 0.00 2.90
702 705 2.507058 AGGCTGCTTCATTCCACATCTA 59.493 45.455 0.00 0.00 0.00 1.98
703 706 2.877168 GGCTGCTTCATTCCACATCTAG 59.123 50.000 0.00 0.00 0.00 2.43
704 707 3.539604 GCTGCTTCATTCCACATCTAGT 58.460 45.455 0.00 0.00 0.00 2.57
705 708 3.944015 GCTGCTTCATTCCACATCTAGTT 59.056 43.478 0.00 0.00 0.00 2.24
706 709 4.397417 GCTGCTTCATTCCACATCTAGTTT 59.603 41.667 0.00 0.00 0.00 2.66
707 710 5.675575 GCTGCTTCATTCCACATCTAGTTTG 60.676 44.000 0.00 0.00 0.00 2.93
708 711 4.156556 TGCTTCATTCCACATCTAGTTTGC 59.843 41.667 0.00 0.00 0.00 3.68
709 712 4.397417 GCTTCATTCCACATCTAGTTTGCT 59.603 41.667 0.00 0.00 0.00 3.91
710 713 5.105997 GCTTCATTCCACATCTAGTTTGCTT 60.106 40.000 0.00 0.00 0.00 3.91
711 714 6.500684 TTCATTCCACATCTAGTTTGCTTC 57.499 37.500 0.00 0.00 0.00 3.86
712 715 5.559770 TCATTCCACATCTAGTTTGCTTCA 58.440 37.500 0.00 0.00 0.00 3.02
713 716 5.412594 TCATTCCACATCTAGTTTGCTTCAC 59.587 40.000 0.00 0.00 0.00 3.18
714 717 3.674997 TCCACATCTAGTTTGCTTCACC 58.325 45.455 0.00 0.00 0.00 4.02
715 718 2.749621 CCACATCTAGTTTGCTTCACCC 59.250 50.000 0.00 0.00 0.00 4.61
716 719 3.560025 CCACATCTAGTTTGCTTCACCCT 60.560 47.826 0.00 0.00 0.00 4.34
717 720 4.323485 CCACATCTAGTTTGCTTCACCCTA 60.323 45.833 0.00 0.00 0.00 3.53
718 721 4.872691 CACATCTAGTTTGCTTCACCCTAG 59.127 45.833 0.00 0.00 0.00 3.02
719 722 4.080863 ACATCTAGTTTGCTTCACCCTAGG 60.081 45.833 0.06 0.06 0.00 3.02
720 723 3.786553 TCTAGTTTGCTTCACCCTAGGA 58.213 45.455 11.48 0.00 0.00 2.94
721 724 2.861147 AGTTTGCTTCACCCTAGGAC 57.139 50.000 11.48 0.00 0.00 3.85
722 725 2.054799 AGTTTGCTTCACCCTAGGACA 58.945 47.619 11.48 0.00 0.00 4.02
723 726 2.152016 GTTTGCTTCACCCTAGGACAC 58.848 52.381 11.48 0.00 0.00 3.67
724 727 1.729586 TTGCTTCACCCTAGGACACT 58.270 50.000 11.48 0.00 0.00 3.55
725 728 1.729586 TGCTTCACCCTAGGACACTT 58.270 50.000 11.48 0.00 0.00 3.16
726 729 1.347707 TGCTTCACCCTAGGACACTTG 59.652 52.381 11.48 0.00 0.00 3.16
727 730 1.339151 GCTTCACCCTAGGACACTTGG 60.339 57.143 11.48 0.00 39.05 3.61
728 731 0.690762 TTCACCCTAGGACACTTGGC 59.309 55.000 11.48 0.00 38.16 4.52
729 732 0.178903 TCACCCTAGGACACTTGGCT 60.179 55.000 11.48 0.00 38.16 4.75
730 733 1.078159 TCACCCTAGGACACTTGGCTA 59.922 52.381 11.48 0.00 38.16 3.93
731 734 1.207329 CACCCTAGGACACTTGGCTAC 59.793 57.143 11.48 0.00 38.16 3.58
732 735 1.078989 ACCCTAGGACACTTGGCTACT 59.921 52.381 11.48 0.00 38.16 2.57
733 736 2.188817 CCCTAGGACACTTGGCTACTT 58.811 52.381 11.48 0.00 38.16 2.24
734 737 3.245875 ACCCTAGGACACTTGGCTACTTA 60.246 47.826 11.48 0.00 38.16 2.24
735 738 3.385111 CCCTAGGACACTTGGCTACTTAG 59.615 52.174 11.48 0.00 38.16 2.18
736 739 4.279145 CCTAGGACACTTGGCTACTTAGA 58.721 47.826 1.05 0.00 32.96 2.10
737 740 4.896482 CCTAGGACACTTGGCTACTTAGAT 59.104 45.833 1.05 0.00 32.96 1.98
738 741 5.364157 CCTAGGACACTTGGCTACTTAGATT 59.636 44.000 1.05 0.00 32.96 2.40
739 742 5.763876 AGGACACTTGGCTACTTAGATTT 57.236 39.130 0.00 0.00 0.00 2.17
740 743 6.128138 AGGACACTTGGCTACTTAGATTTT 57.872 37.500 0.00 0.00 0.00 1.82
741 744 6.543735 AGGACACTTGGCTACTTAGATTTTT 58.456 36.000 0.00 0.00 0.00 1.94
742 745 7.686434 AGGACACTTGGCTACTTAGATTTTTA 58.314 34.615 0.00 0.00 0.00 1.52
745 748 8.685838 ACACTTGGCTACTTAGATTTTTACAA 57.314 30.769 0.00 0.00 0.00 2.41
760 763 6.371809 TTTTTACAAATCTCTGCTCAACGT 57.628 33.333 0.00 0.00 0.00 3.99
762 765 1.532868 ACAAATCTCTGCTCAACGTGC 59.467 47.619 0.00 0.00 0.00 5.34
792 795 5.768752 TCATACACCTACCACATACTACCA 58.231 41.667 0.00 0.00 0.00 3.25
931 934 7.413438 CGATTAATCTTCTTCAGGGAACAAGTG 60.413 40.741 13.45 0.00 0.00 3.16
951 954 1.677217 GCAGGCCAGGAAGACAAGTAG 60.677 57.143 5.01 0.00 0.00 2.57
1238 1258 0.466189 ACCTTCACCAAGCACACCAG 60.466 55.000 0.00 0.00 0.00 4.00
1375 1398 0.034896 GTTCCTCAAGAAGGCCGACA 59.965 55.000 0.00 0.00 45.78 4.35
1390 1413 1.867919 CGACAAGCTCGACAGGGAGT 61.868 60.000 0.00 0.00 46.14 3.85
1522 1545 4.459089 GGAGGACGCTGGGTCTGC 62.459 72.222 21.89 14.48 45.35 4.26
1662 1685 0.834687 TCTTCAGTACCAACCGGGCT 60.835 55.000 6.32 0.00 42.05 5.19
1689 1712 4.307032 AGTGCCACATACATCTCCTTTT 57.693 40.909 0.00 0.00 0.00 2.27
1752 1775 2.125753 GCTGCTGTGAGAGTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
1753 1776 2.936912 GCTGCTGTGAGAGTCCCGT 61.937 63.158 0.00 0.00 0.00 5.28
1765 1788 0.674895 AGTCCCGTTGCTGCATCTTC 60.675 55.000 1.84 0.00 0.00 2.87
1779 1814 4.410099 TGCATCTTCCAAACTTTCATCCT 58.590 39.130 0.00 0.00 0.00 3.24
1842 1877 3.135348 TCCCATCTGATAGTGCAAGGAAG 59.865 47.826 0.00 0.00 0.00 3.46
1912 1947 4.616553 TGCTACTACACTTTCCCCTGATA 58.383 43.478 0.00 0.00 0.00 2.15
1917 1953 7.556635 GCTACTACACTTTCCCCTGATATTTTT 59.443 37.037 0.00 0.00 0.00 1.94
1921 1957 9.681062 CTACACTTTCCCCTGATATTTTTAGAA 57.319 33.333 0.00 0.00 0.00 2.10
1938 1974 7.639113 TTTTAGAACACCATTTGTCTTGAGT 57.361 32.000 0.00 0.00 37.51 3.41
1939 1975 7.639113 TTTAGAACACCATTTGTCTTGAGTT 57.361 32.000 0.00 0.00 37.51 3.01
1940 1976 8.740123 TTTAGAACACCATTTGTCTTGAGTTA 57.260 30.769 0.00 0.00 37.51 2.24
1941 1977 8.740123 TTAGAACACCATTTGTCTTGAGTTAA 57.260 30.769 0.00 0.00 37.51 2.01
1942 1978 7.823745 AGAACACCATTTGTCTTGAGTTAAT 57.176 32.000 0.00 0.00 37.51 1.40
1943 1979 8.237811 AGAACACCATTTGTCTTGAGTTAATT 57.762 30.769 0.00 0.00 37.51 1.40
1944 1980 8.695456 AGAACACCATTTGTCTTGAGTTAATTT 58.305 29.630 0.00 0.00 37.51 1.82
1945 1981 9.959749 GAACACCATTTGTCTTGAGTTAATTTA 57.040 29.630 0.00 0.00 37.51 1.40
2003 2039 1.172175 TGTTTGTTCACTGCTGCACA 58.828 45.000 0.00 0.00 0.00 4.57
2004 2040 1.135431 TGTTTGTTCACTGCTGCACAC 60.135 47.619 0.00 0.00 0.00 3.82
2012 2048 3.475575 TCACTGCTGCACACTGAATAAA 58.524 40.909 0.00 0.00 0.00 1.40
2049 2085 6.672147 ACTGCAAACAACAAGAAATAGCTAG 58.328 36.000 0.00 0.00 0.00 3.42
2089 2125 5.002464 GCATGAAACCATATGCAAGTCTT 57.998 39.130 0.00 0.00 46.72 3.01
2110 2146 6.907212 GTCTTGAACACTTTGTACACATCTTG 59.093 38.462 0.00 0.00 0.00 3.02
2115 2151 6.317789 ACACTTTGTACACATCTTGAATGG 57.682 37.500 0.00 0.00 0.00 3.16
2117 2153 6.205464 ACACTTTGTACACATCTTGAATGGAG 59.795 38.462 0.00 0.00 0.00 3.86
2125 2161 3.698040 ACATCTTGAATGGAGTGGAATGC 59.302 43.478 0.00 0.00 0.00 3.56
2147 2183 1.153369 TTAGCATGCTCCCTGCGAC 60.153 57.895 26.57 0.00 46.63 5.19
2199 2235 9.736023 GGTGTTATTTCATAATTTGCTTAGAGG 57.264 33.333 0.00 0.00 0.00 3.69
2315 2512 8.615878 AACTACATAAATTAGCACTGTGTTCA 57.384 30.769 9.86 0.00 0.00 3.18
2421 2619 9.220767 GAACATAAATCAACCTTCTCTGTAGTT 57.779 33.333 0.00 0.00 0.00 2.24
2422 2620 9.574516 AACATAAATCAACCTTCTCTGTAGTTT 57.425 29.630 0.00 0.00 0.00 2.66
2456 2654 3.896648 TTTCAGTCGAAAAGCCATGTC 57.103 42.857 0.00 0.00 38.19 3.06
2474 2678 5.760253 CCATGTCAAAGAGTTCTAACAGTGT 59.240 40.000 0.00 0.00 0.00 3.55
2475 2679 6.293081 CCATGTCAAAGAGTTCTAACAGTGTG 60.293 42.308 0.00 0.00 0.00 3.82
2476 2680 4.570772 TGTCAAAGAGTTCTAACAGTGTGC 59.429 41.667 0.00 0.00 0.00 4.57
2477 2681 4.811557 GTCAAAGAGTTCTAACAGTGTGCT 59.188 41.667 0.00 0.00 0.00 4.40
2478 2682 5.050490 TCAAAGAGTTCTAACAGTGTGCTC 58.950 41.667 0.00 0.56 0.00 4.26
2479 2683 3.669251 AGAGTTCTAACAGTGTGCTCC 57.331 47.619 0.00 0.00 0.00 4.70
2480 2684 3.235200 AGAGTTCTAACAGTGTGCTCCT 58.765 45.455 0.00 0.00 0.00 3.69
2481 2685 3.257127 AGAGTTCTAACAGTGTGCTCCTC 59.743 47.826 0.00 0.00 0.00 3.71
2482 2686 3.235200 AGTTCTAACAGTGTGCTCCTCT 58.765 45.455 0.00 0.00 0.00 3.69
2483 2687 3.006323 AGTTCTAACAGTGTGCTCCTCTG 59.994 47.826 0.00 6.55 35.60 3.35
2484 2688 2.876581 TCTAACAGTGTGCTCCTCTGA 58.123 47.619 0.00 0.00 33.93 3.27
2485 2689 3.230976 TCTAACAGTGTGCTCCTCTGAA 58.769 45.455 0.00 3.16 33.93 3.02
2486 2690 3.834813 TCTAACAGTGTGCTCCTCTGAAT 59.165 43.478 0.00 6.03 33.93 2.57
2487 2691 5.016831 TCTAACAGTGTGCTCCTCTGAATA 58.983 41.667 0.00 6.62 33.93 1.75
2488 2692 4.623932 AACAGTGTGCTCCTCTGAATAA 57.376 40.909 0.00 0.00 33.93 1.40
2489 2693 3.931578 ACAGTGTGCTCCTCTGAATAAC 58.068 45.455 12.64 0.00 33.93 1.89
2490 2694 3.580458 ACAGTGTGCTCCTCTGAATAACT 59.420 43.478 12.64 0.00 33.93 2.24
2491 2695 3.931468 CAGTGTGCTCCTCTGAATAACTG 59.069 47.826 3.12 0.00 0.00 3.16
2492 2696 2.675348 GTGTGCTCCTCTGAATAACTGC 59.325 50.000 0.00 0.00 0.00 4.40
2493 2697 2.568956 TGTGCTCCTCTGAATAACTGCT 59.431 45.455 0.00 0.00 0.00 4.24
2494 2698 3.769300 TGTGCTCCTCTGAATAACTGCTA 59.231 43.478 0.00 0.00 0.00 3.49
2495 2699 4.116238 GTGCTCCTCTGAATAACTGCTAC 58.884 47.826 0.00 0.00 0.00 3.58
2496 2700 3.133003 TGCTCCTCTGAATAACTGCTACC 59.867 47.826 0.00 0.00 0.00 3.18
2497 2701 3.797184 GCTCCTCTGAATAACTGCTACCG 60.797 52.174 0.00 0.00 0.00 4.02
2498 2702 2.693591 TCCTCTGAATAACTGCTACCGG 59.306 50.000 0.00 0.00 0.00 5.28
2499 2703 2.474816 CTCTGAATAACTGCTACCGGC 58.525 52.381 0.00 0.00 42.22 6.13
2520 2724 6.418141 CGGCACTTTGTTTTCTTTTAAATGG 58.582 36.000 1.63 0.00 0.00 3.16
2522 2726 7.406553 GGCACTTTGTTTTCTTTTAAATGGAC 58.593 34.615 1.63 0.59 0.00 4.02
2532 2736 3.436577 TTTAAATGGACCTGGGCGTTA 57.563 42.857 0.00 0.00 0.00 3.18
2533 2737 3.436577 TTAAATGGACCTGGGCGTTAA 57.563 42.857 0.00 0.00 0.00 2.01
2534 2738 1.834188 AAATGGACCTGGGCGTTAAG 58.166 50.000 0.00 0.00 0.00 1.85
2545 2767 3.061093 GCGTTAAGCCCAGTCCTAC 57.939 57.895 0.00 0.00 40.81 3.18
2609 2832 3.316029 TGGTGTATTAGCATGCATTCTGC 59.684 43.478 21.98 5.84 45.29 4.26
2694 2919 0.543749 GGTAGCTGTTGCCCTCTCAT 59.456 55.000 0.00 0.00 40.80 2.90
2699 2924 3.512516 GTTGCCCTCTCATGCGGC 61.513 66.667 0.00 0.00 43.32 6.53
2719 2944 5.404946 CGGCAATTCTTGAAGAATCAATGT 58.595 37.500 19.66 2.29 43.67 2.71
2772 2997 0.465705 CCCTGGATTTAGCTCTGCGA 59.534 55.000 0.00 0.00 0.00 5.10
2851 3076 1.374758 CCTGAGGACGCAGACAACC 60.375 63.158 4.58 0.00 38.14 3.77
2863 3088 0.456221 AGACAACCTCGCTACCATCG 59.544 55.000 0.00 0.00 0.00 3.84
2896 3121 2.332514 CAGCCAAGGTGCACAACG 59.667 61.111 20.43 5.38 0.00 4.10
2914 3139 1.521457 GCCAAGCCATGATCGACGA 60.521 57.895 0.00 0.00 0.00 4.20
2919 3144 0.383590 AGCCATGATCGACGAGTCTG 59.616 55.000 3.01 0.14 0.00 3.51
2939 3164 3.047877 CCAACTTCGCCCGACACC 61.048 66.667 0.00 0.00 0.00 4.16
2985 3212 5.995446 AGAAGTACTCCTTGATCCAAATCC 58.005 41.667 0.00 0.00 32.03 3.01
2995 3222 7.309091 TCCTTGATCCAAATCCTACTCTCTAT 58.691 38.462 0.00 0.00 0.00 1.98
3030 3257 1.222567 CCCTATAGGTGCCCCAAAGT 58.777 55.000 17.72 0.00 0.00 2.66
3038 3265 0.759060 GTGCCCCAAAGTCCCAAACT 60.759 55.000 0.00 0.00 41.10 2.66
3146 3373 8.190122 TGGATTTGTGCTAAGTTATGCTATTTG 58.810 33.333 6.09 0.00 0.00 2.32
3150 3377 9.443323 TTTGTGCTAAGTTATGCTATTTGTCTA 57.557 29.630 6.09 0.00 0.00 2.59
3151 3378 8.648557 TGTGCTAAGTTATGCTATTTGTCTAG 57.351 34.615 6.09 0.00 0.00 2.43
3165 3392 6.854496 ATTTGTCTAGAAACGTGTGCTTAA 57.146 33.333 0.00 0.00 0.00 1.85
3166 3393 6.854496 TTTGTCTAGAAACGTGTGCTTAAT 57.146 33.333 0.00 0.00 0.00 1.40
3168 3395 7.949903 TTGTCTAGAAACGTGTGCTTAATTA 57.050 32.000 0.00 0.00 0.00 1.40
3169 3396 7.342318 TGTCTAGAAACGTGTGCTTAATTAC 57.658 36.000 0.00 0.00 0.00 1.89
3170 3397 6.366877 TGTCTAGAAACGTGTGCTTAATTACC 59.633 38.462 0.00 0.00 0.00 2.85
3171 3398 6.589139 GTCTAGAAACGTGTGCTTAATTACCT 59.411 38.462 0.00 0.00 0.00 3.08
3172 3399 7.117379 GTCTAGAAACGTGTGCTTAATTACCTT 59.883 37.037 0.00 0.00 0.00 3.50
3173 3400 5.997385 AGAAACGTGTGCTTAATTACCTTG 58.003 37.500 0.00 0.00 0.00 3.61
3218 3446 4.272018 GCGAACACAATGCTATCTTGATCT 59.728 41.667 0.00 0.00 0.00 2.75
3273 3501 7.524698 GCAAGAAATAGCTAGCTATACACTCCT 60.525 40.741 32.30 20.14 38.20 3.69
3313 3541 7.094634 CCATATGCAAGTCTAGAACACTTTTGT 60.095 37.037 0.00 0.00 37.67 2.83
3314 3542 8.935844 CATATGCAAGTCTAGAACACTTTTGTA 58.064 33.333 0.00 0.00 33.55 2.41
3315 3543 6.844696 TGCAAGTCTAGAACACTTTTGTAG 57.155 37.500 0.00 0.00 33.55 2.74
3316 3544 6.346096 TGCAAGTCTAGAACACTTTTGTAGT 58.654 36.000 0.00 0.00 33.55 2.73
3317 3545 6.821665 TGCAAGTCTAGAACACTTTTGTAGTT 59.178 34.615 0.00 0.00 33.55 2.24
3318 3546 7.011109 TGCAAGTCTAGAACACTTTTGTAGTTC 59.989 37.037 0.00 0.00 38.99 3.01
3319 3547 7.224949 GCAAGTCTAGAACACTTTTGTAGTTCT 59.775 37.037 11.23 11.23 44.60 3.01
3320 3548 8.756864 CAAGTCTAGAACACTTTTGTAGTTCTC 58.243 37.037 9.98 0.00 43.15 2.87
3321 3549 8.008513 AGTCTAGAACACTTTTGTAGTTCTCA 57.991 34.615 9.98 0.00 43.15 3.27
3322 3550 8.475639 AGTCTAGAACACTTTTGTAGTTCTCAA 58.524 33.333 9.98 0.00 43.15 3.02
3323 3551 9.262358 GTCTAGAACACTTTTGTAGTTCTCAAT 57.738 33.333 9.98 0.00 43.15 2.57
3324 3552 9.832445 TCTAGAACACTTTTGTAGTTCTCAATT 57.168 29.630 9.98 0.00 43.15 2.32
3328 3556 9.997482 GAACACTTTTGTAGTTCTCAATTTACA 57.003 29.630 0.00 0.00 37.42 2.41
3360 3588 9.885743 GTTTGGAATTTCGAAATTTATTCATCG 57.114 29.630 30.92 2.08 38.64 3.84
3361 3589 7.678194 TGGAATTTCGAAATTTATTCATCGC 57.322 32.000 30.92 17.44 38.64 4.58
3362 3590 7.479980 TGGAATTTCGAAATTTATTCATCGCT 58.520 30.769 30.92 9.82 38.64 4.93
3363 3591 7.973388 TGGAATTTCGAAATTTATTCATCGCTT 59.027 29.630 30.92 10.33 38.64 4.68
3364 3592 8.472236 GGAATTTCGAAATTTATTCATCGCTTC 58.528 33.333 30.92 17.15 38.64 3.86
3365 3593 8.909708 AATTTCGAAATTTATTCATCGCTTCA 57.090 26.923 26.51 0.00 35.16 3.02
3366 3594 8.909708 ATTTCGAAATTTATTCATCGCTTCAA 57.090 26.923 17.60 0.00 35.39 2.69
3367 3595 8.735303 TTTCGAAATTTATTCATCGCTTCAAA 57.265 26.923 6.47 0.00 35.39 2.69
3368 3596 8.735303 TTCGAAATTTATTCATCGCTTCAAAA 57.265 26.923 0.00 0.00 35.39 2.44
3369 3597 8.735303 TCGAAATTTATTCATCGCTTCAAAAA 57.265 26.923 0.00 0.00 35.39 1.94
3393 3621 8.791327 AAATGTTTTTGGAGTTTTCTTCATGT 57.209 26.923 0.00 0.00 35.06 3.21
3394 3622 8.791327 AATGTTTTTGGAGTTTTCTTCATGTT 57.209 26.923 0.00 0.00 35.06 2.71
3395 3623 7.826260 TGTTTTTGGAGTTTTCTTCATGTTC 57.174 32.000 0.00 0.00 35.06 3.18
3396 3624 7.610865 TGTTTTTGGAGTTTTCTTCATGTTCT 58.389 30.769 0.00 0.00 35.06 3.01
3397 3625 7.545265 TGTTTTTGGAGTTTTCTTCATGTTCTG 59.455 33.333 0.00 0.00 35.06 3.02
3398 3626 7.403312 TTTTGGAGTTTTCTTCATGTTCTGA 57.597 32.000 0.00 0.00 35.06 3.27
3399 3627 7.403312 TTTGGAGTTTTCTTCATGTTCTGAA 57.597 32.000 0.00 0.00 41.61 3.02
3400 3628 7.403312 TTGGAGTTTTCTTCATGTTCTGAAA 57.597 32.000 0.00 0.00 43.20 2.69
3401 3629 7.403312 TGGAGTTTTCTTCATGTTCTGAAAA 57.597 32.000 0.00 10.99 43.20 2.29
3402 3630 7.835822 TGGAGTTTTCTTCATGTTCTGAAAAA 58.164 30.769 14.26 4.45 43.20 1.94
3403 3631 7.759433 TGGAGTTTTCTTCATGTTCTGAAAAAC 59.241 33.333 14.26 12.41 43.20 2.43
3404 3632 7.044052 GGAGTTTTCTTCATGTTCTGAAAAACG 60.044 37.037 14.26 0.00 43.27 3.60
3405 3633 7.312899 AGTTTTCTTCATGTTCTGAAAAACGT 58.687 30.769 14.26 0.00 43.27 3.99
3406 3634 7.812669 AGTTTTCTTCATGTTCTGAAAAACGTT 59.187 29.630 0.00 0.00 43.27 3.99
3407 3635 7.734538 TTTCTTCATGTTCTGAAAAACGTTC 57.265 32.000 0.00 0.00 43.20 3.95
3408 3636 5.498159 TCTTCATGTTCTGAAAAACGTTCG 58.502 37.500 0.00 0.00 43.20 3.95
3409 3637 4.203950 TCATGTTCTGAAAAACGTTCGG 57.796 40.909 0.00 0.00 31.58 4.30
3410 3638 3.872182 TCATGTTCTGAAAAACGTTCGGA 59.128 39.130 0.00 0.00 32.41 4.55
3411 3639 4.333095 TCATGTTCTGAAAAACGTTCGGAA 59.667 37.500 0.00 3.32 40.40 4.30
3412 3640 4.886247 TGTTCTGAAAAACGTTCGGAAT 57.114 36.364 11.98 0.00 43.30 3.01
3413 3641 5.238006 TGTTCTGAAAAACGTTCGGAATT 57.762 34.783 11.98 0.00 43.30 2.17
3414 3642 5.642686 TGTTCTGAAAAACGTTCGGAATTT 58.357 33.333 11.98 4.23 43.30 1.82
3415 3643 6.783162 TGTTCTGAAAAACGTTCGGAATTTA 58.217 32.000 11.98 2.07 43.30 1.40
3416 3644 7.419204 TGTTCTGAAAAACGTTCGGAATTTAT 58.581 30.769 11.98 0.00 43.30 1.40
3417 3645 8.557864 TGTTCTGAAAAACGTTCGGAATTTATA 58.442 29.630 11.98 0.00 43.30 0.98
3418 3646 9.047871 GTTCTGAAAAACGTTCGGAATTTATAG 57.952 33.333 11.98 6.56 43.30 1.31
3419 3647 8.314143 TCTGAAAAACGTTCGGAATTTATAGT 57.686 30.769 0.00 0.00 31.42 2.12
3420 3648 8.776470 TCTGAAAAACGTTCGGAATTTATAGTT 58.224 29.630 0.00 0.00 31.42 2.24
3421 3649 9.389570 CTGAAAAACGTTCGGAATTTATAGTTT 57.610 29.630 0.00 0.00 32.78 2.66
3422 3650 9.733219 TGAAAAACGTTCGGAATTTATAGTTTT 57.267 25.926 0.00 4.55 40.73 2.43
3423 3651 9.983431 GAAAAACGTTCGGAATTTATAGTTTTG 57.017 29.630 0.00 0.00 39.50 2.44
3424 3652 9.518906 AAAAACGTTCGGAATTTATAGTTTTGT 57.481 25.926 0.00 7.67 39.50 2.83
3425 3653 9.518906 AAAACGTTCGGAATTTATAGTTTTGTT 57.481 25.926 0.00 0.00 38.56 2.83
3426 3654 8.718047 AACGTTCGGAATTTATAGTTTTGTTC 57.282 30.769 0.00 0.00 0.00 3.18
3427 3655 7.863666 ACGTTCGGAATTTATAGTTTTGTTCA 58.136 30.769 0.00 0.00 0.00 3.18
3428 3656 7.799914 ACGTTCGGAATTTATAGTTTTGTTCAC 59.200 33.333 0.00 0.00 0.00 3.18
3429 3657 7.799447 CGTTCGGAATTTATAGTTTTGTTCACA 59.201 33.333 0.00 0.00 0.00 3.58
3430 3658 9.620660 GTTCGGAATTTATAGTTTTGTTCACAT 57.379 29.630 0.00 0.00 0.00 3.21
3448 3676 9.897744 TGTTCACATTTTTAAAAATTGTTTGCA 57.102 22.222 20.92 13.55 36.52 4.08
3484 3712 8.885494 ATGTTCGAAATTTCCAAAGAAAATCA 57.115 26.923 12.54 5.51 44.91 2.57
3485 3713 8.885494 TGTTCGAAATTTCCAAAGAAAATCAT 57.115 26.923 12.54 0.00 44.91 2.45
3486 3714 8.763356 TGTTCGAAATTTCCAAAGAAAATCATG 58.237 29.630 12.54 0.00 44.91 3.07
3487 3715 7.350110 TCGAAATTTCCAAAGAAAATCATGC 57.650 32.000 12.54 0.00 44.91 4.06
3488 3716 6.927936 TCGAAATTTCCAAAGAAAATCATGCA 59.072 30.769 12.54 0.00 44.91 3.96
3489 3717 7.116662 TCGAAATTTCCAAAGAAAATCATGCAG 59.883 33.333 12.54 0.00 44.91 4.41
3490 3718 7.116662 CGAAATTTCCAAAGAAAATCATGCAGA 59.883 33.333 12.54 0.00 44.91 4.26
3491 3719 8.680039 AAATTTCCAAAGAAAATCATGCAGAA 57.320 26.923 0.00 0.00 44.91 3.02
3492 3720 8.680039 AATTTCCAAAGAAAATCATGCAGAAA 57.320 26.923 0.00 0.00 44.91 2.52
3493 3721 8.680039 ATTTCCAAAGAAAATCATGCAGAAAA 57.320 26.923 0.00 0.00 44.91 2.29
3494 3722 8.503458 TTTCCAAAGAAAATCATGCAGAAAAA 57.497 26.923 0.00 0.00 39.05 1.94
3495 3723 8.680039 TTCCAAAGAAAATCATGCAGAAAAAT 57.320 26.923 0.00 0.00 0.00 1.82
3496 3724 9.775854 TTCCAAAGAAAATCATGCAGAAAAATA 57.224 25.926 0.00 0.00 0.00 1.40
3497 3725 9.775854 TCCAAAGAAAATCATGCAGAAAAATAA 57.224 25.926 0.00 0.00 0.00 1.40
3498 3726 9.815936 CCAAAGAAAATCATGCAGAAAAATAAC 57.184 29.630 0.00 0.00 0.00 1.89
3501 3729 8.767478 AGAAAATCATGCAGAAAAATAACTGG 57.233 30.769 0.00 0.00 35.05 4.00
3502 3730 8.587608 AGAAAATCATGCAGAAAAATAACTGGA 58.412 29.630 0.00 0.00 38.65 3.86
3503 3731 8.767478 AAAATCATGCAGAAAAATAACTGGAG 57.233 30.769 0.00 0.00 37.82 3.86
3504 3732 7.472334 AATCATGCAGAAAAATAACTGGAGT 57.528 32.000 0.00 0.00 37.82 3.85
3505 3733 6.899393 TCATGCAGAAAAATAACTGGAGTT 57.101 33.333 0.00 0.00 37.82 3.01
3506 3734 7.994425 TCATGCAGAAAAATAACTGGAGTTA 57.006 32.000 1.79 1.79 43.71 2.24
3507 3735 7.816640 TCATGCAGAAAAATAACTGGAGTTAC 58.183 34.615 1.31 0.00 42.55 2.50
3508 3736 6.236017 TGCAGAAAAATAACTGGAGTTACG 57.764 37.500 1.31 0.00 42.55 3.18
3509 3737 5.992829 TGCAGAAAAATAACTGGAGTTACGA 59.007 36.000 1.31 0.00 42.55 3.43
3510 3738 6.483974 TGCAGAAAAATAACTGGAGTTACGAA 59.516 34.615 1.31 0.00 42.55 3.85
3511 3739 7.012515 TGCAGAAAAATAACTGGAGTTACGAAA 59.987 33.333 1.31 0.00 42.55 3.46
3512 3740 8.021396 GCAGAAAAATAACTGGAGTTACGAAAT 58.979 33.333 1.31 0.00 42.55 2.17
3513 3741 9.893305 CAGAAAAATAACTGGAGTTACGAAATT 57.107 29.630 1.31 0.00 42.55 1.82
3519 3747 9.673454 AATAACTGGAGTTACGAAATTTTGTTC 57.327 29.630 16.17 8.08 42.55 3.18
3520 3748 7.346695 TAACTGGAGTTACGAAATTTTGTTCG 58.653 34.615 16.17 6.06 45.27 3.95
3521 3749 7.988704 TAACTGGAGTTACGAAATTTTGTTCGC 60.989 37.037 16.17 11.15 44.58 4.70
3530 3758 6.196535 CGAAATTTTGTTCGCATTTTCAGA 57.803 33.333 0.00 0.00 43.38 3.27
3531 3759 6.635522 CGAAATTTTGTTCGCATTTTCAGAA 58.364 32.000 0.00 0.00 43.38 3.02
3532 3760 7.116186 CGAAATTTTGTTCGCATTTTCAGAAA 58.884 30.769 0.00 0.00 43.38 2.52
3533 3761 7.634048 CGAAATTTTGTTCGCATTTTCAGAAAA 59.366 29.630 10.80 10.80 43.38 2.29
3534 3762 9.437045 GAAATTTTGTTCGCATTTTCAGAAAAT 57.563 25.926 14.43 14.43 41.57 1.82
3575 3803 9.822185 AAAAATGCTCTCACTTCTAAATTTTGT 57.178 25.926 0.00 0.00 0.00 2.83
3576 3804 9.822185 AAAATGCTCTCACTTCTAAATTTTGTT 57.178 25.926 0.00 0.00 0.00 2.83
3577 3805 9.822185 AAATGCTCTCACTTCTAAATTTTGTTT 57.178 25.926 0.00 0.00 0.00 2.83
3578 3806 8.807667 ATGCTCTCACTTCTAAATTTTGTTTG 57.192 30.769 0.00 0.00 0.00 2.93
3579 3807 7.771183 TGCTCTCACTTCTAAATTTTGTTTGT 58.229 30.769 0.00 0.00 0.00 2.83
3580 3808 7.701924 TGCTCTCACTTCTAAATTTTGTTTGTG 59.298 33.333 0.00 6.14 0.00 3.33
3581 3809 7.702348 GCTCTCACTTCTAAATTTTGTTTGTGT 59.298 33.333 0.00 0.00 0.00 3.72
3582 3810 9.573133 CTCTCACTTCTAAATTTTGTTTGTGTT 57.427 29.630 0.00 0.00 0.00 3.32
3583 3811 9.567848 TCTCACTTCTAAATTTTGTTTGTGTTC 57.432 29.630 0.00 0.00 0.00 3.18
3584 3812 9.573133 CTCACTTCTAAATTTTGTTTGTGTTCT 57.427 29.630 0.00 0.00 0.00 3.01
3585 3813 9.352784 TCACTTCTAAATTTTGTTTGTGTTCTG 57.647 29.630 0.00 0.00 0.00 3.02
3586 3814 9.352784 CACTTCTAAATTTTGTTTGTGTTCTGA 57.647 29.630 0.00 0.00 0.00 3.27
3587 3815 9.921637 ACTTCTAAATTTTGTTTGTGTTCTGAA 57.078 25.926 0.00 0.00 0.00 3.02
3687 3915 7.848223 AAAAAGTCTGGAGGTTCAAATTTTG 57.152 32.000 2.59 2.59 0.00 2.44
3688 3916 6.544928 AAAGTCTGGAGGTTCAAATTTTGT 57.455 33.333 8.89 0.00 0.00 2.83
3689 3917 5.520376 AGTCTGGAGGTTCAAATTTTGTG 57.480 39.130 8.89 0.00 0.00 3.33
3690 3918 4.956075 AGTCTGGAGGTTCAAATTTTGTGT 59.044 37.500 8.89 0.00 0.00 3.72
3691 3919 5.043248 GTCTGGAGGTTCAAATTTTGTGTG 58.957 41.667 8.89 0.00 0.00 3.82
3692 3920 4.709397 TCTGGAGGTTCAAATTTTGTGTGT 59.291 37.500 8.89 0.00 0.00 3.72
3693 3921 5.186797 TCTGGAGGTTCAAATTTTGTGTGTT 59.813 36.000 8.89 0.00 0.00 3.32
3694 3922 5.799213 TGGAGGTTCAAATTTTGTGTGTTT 58.201 33.333 8.89 0.00 0.00 2.83
3695 3923 6.234177 TGGAGGTTCAAATTTTGTGTGTTTT 58.766 32.000 8.89 0.00 0.00 2.43
3696 3924 6.712547 TGGAGGTTCAAATTTTGTGTGTTTTT 59.287 30.769 8.89 0.00 0.00 1.94
3697 3925 7.095017 TGGAGGTTCAAATTTTGTGTGTTTTTC 60.095 33.333 8.89 0.00 0.00 2.29
3698 3926 6.826612 AGGTTCAAATTTTGTGTGTTTTTCG 58.173 32.000 8.89 0.00 0.00 3.46
3699 3927 6.647067 AGGTTCAAATTTTGTGTGTTTTTCGA 59.353 30.769 8.89 0.00 0.00 3.71
3700 3928 7.171678 AGGTTCAAATTTTGTGTGTTTTTCGAA 59.828 29.630 8.89 0.00 0.00 3.71
3701 3929 7.798982 GGTTCAAATTTTGTGTGTTTTTCGAAA 59.201 29.630 6.47 6.47 0.00 3.46
3702 3930 9.323963 GTTCAAATTTTGTGTGTTTTTCGAAAT 57.676 25.926 12.12 0.00 0.00 2.17
3703 3931 9.884465 TTCAAATTTTGTGTGTTTTTCGAAATT 57.116 22.222 12.12 0.00 37.00 1.82
3704 3932 9.884465 TCAAATTTTGTGTGTTTTTCGAAATTT 57.116 22.222 12.12 1.86 41.63 1.82
3705 3933 9.920043 CAAATTTTGTGTGTTTTTCGAAATTTG 57.080 25.926 12.12 19.00 45.52 2.32
3706 3934 9.670719 AAATTTTGTGTGTTTTTCGAAATTTGT 57.329 22.222 12.12 0.00 40.51 2.83
3707 3935 9.670719 AATTTTGTGTGTTTTTCGAAATTTGTT 57.329 22.222 12.12 0.00 33.86 2.83
3708 3936 8.700994 TTTTGTGTGTTTTTCGAAATTTGTTC 57.299 26.923 12.12 2.99 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.400594 CTTCGTCCAACCTTCCCCTT 59.599 55.000 0.00 0.00 0.00 3.95
4 5 0.685660 ACTCCTTCGTCCAACCTTCC 59.314 55.000 0.00 0.00 0.00 3.46
5 6 3.672767 TTACTCCTTCGTCCAACCTTC 57.327 47.619 0.00 0.00 0.00 3.46
9 10 2.235402 TCCCATTACTCCTTCGTCCAAC 59.765 50.000 0.00 0.00 0.00 3.77
10 11 2.542550 TCCCATTACTCCTTCGTCCAA 58.457 47.619 0.00 0.00 0.00 3.53
11 12 2.241281 TCCCATTACTCCTTCGTCCA 57.759 50.000 0.00 0.00 0.00 4.02
14 15 2.829023 TCCTTCCCATTACTCCTTCGT 58.171 47.619 0.00 0.00 0.00 3.85
15 16 3.906720 TTCCTTCCCATTACTCCTTCG 57.093 47.619 0.00 0.00 0.00 3.79
18 19 4.175962 TCACTTTCCTTCCCATTACTCCT 58.824 43.478 0.00 0.00 0.00 3.69
19 20 4.569719 TCACTTTCCTTCCCATTACTCC 57.430 45.455 0.00 0.00 0.00 3.85
23 24 6.789268 TCATCTTTCACTTTCCTTCCCATTA 58.211 36.000 0.00 0.00 0.00 1.90
24 25 5.644188 TCATCTTTCACTTTCCTTCCCATT 58.356 37.500 0.00 0.00 0.00 3.16
27 28 5.279006 GGTTTCATCTTTCACTTTCCTTCCC 60.279 44.000 0.00 0.00 0.00 3.97
28 29 5.536538 AGGTTTCATCTTTCACTTTCCTTCC 59.463 40.000 0.00 0.00 0.00 3.46
29 30 6.641169 AGGTTTCATCTTTCACTTTCCTTC 57.359 37.500 0.00 0.00 0.00 3.46
30 31 7.559897 TGTAAGGTTTCATCTTTCACTTTCCTT 59.440 33.333 0.00 0.00 35.97 3.36
32 33 7.272037 TGTAAGGTTTCATCTTTCACTTTCC 57.728 36.000 0.00 0.00 0.00 3.13
33 34 9.750125 AAATGTAAGGTTTCATCTTTCACTTTC 57.250 29.630 0.00 0.00 0.00 2.62
202 203 7.739825 TGAAAAGTGCCTAGCAATCTATATCT 58.260 34.615 0.00 0.00 41.47 1.98
212 213 7.880160 ATATACAAATGAAAAGTGCCTAGCA 57.120 32.000 0.00 0.00 35.60 3.49
243 244 9.003658 CAACACACATATTACTTTCTTCCTCTT 57.996 33.333 0.00 0.00 0.00 2.85
244 245 8.157476 ACAACACACATATTACTTTCTTCCTCT 58.843 33.333 0.00 0.00 0.00 3.69
245 246 8.324163 ACAACACACATATTACTTTCTTCCTC 57.676 34.615 0.00 0.00 0.00 3.71
246 247 8.157476 AGACAACACACATATTACTTTCTTCCT 58.843 33.333 0.00 0.00 0.00 3.36
292 293 3.483869 GAGGAGGGCAAGGGCGAT 61.484 66.667 0.00 0.00 42.47 4.58
301 302 1.341913 GGAGGGAAAGAGAGGAGGGC 61.342 65.000 0.00 0.00 0.00 5.19
302 303 0.692756 GGGAGGGAAAGAGAGGAGGG 60.693 65.000 0.00 0.00 0.00 4.30
303 304 0.341609 AGGGAGGGAAAGAGAGGAGG 59.658 60.000 0.00 0.00 0.00 4.30
305 306 0.340208 GGAGGGAGGGAAAGAGAGGA 59.660 60.000 0.00 0.00 0.00 3.71
312 315 2.149521 AAAGGAAGGAGGGAGGGAAA 57.850 50.000 0.00 0.00 0.00 3.13
334 337 1.120795 AGCAGCTAGATGGAGAGGGC 61.121 60.000 10.52 0.00 0.00 5.19
378 381 1.303317 ACCGGAGTTGATGTTGGGC 60.303 57.895 9.46 0.00 0.00 5.36
386 389 2.281484 GGCAAGCACCGGAGTTGA 60.281 61.111 9.46 0.00 0.00 3.18
400 403 2.434331 GTACCTGCTTGTGGGGCA 59.566 61.111 0.00 0.00 38.10 5.36
429 432 1.207390 CCGTAGTAGAGACGAGGACG 58.793 60.000 0.00 0.00 42.98 4.79
447 450 0.389687 GAGAGACTGCACTGTCTGCC 60.390 60.000 12.92 0.77 46.11 4.85
555 558 3.203263 TGTCAAATATTTCCGGGATCCCA 59.797 43.478 30.42 11.55 35.37 4.37
557 560 4.321230 GCATGTCAAATATTTCCGGGATCC 60.321 45.833 1.92 1.92 0.00 3.36
601 604 7.335422 GGTCCTGCTTAACATATCCATATCAAG 59.665 40.741 0.00 0.00 0.00 3.02
602 605 7.168219 GGTCCTGCTTAACATATCCATATCAA 58.832 38.462 0.00 0.00 0.00 2.57
604 607 6.116126 GGGTCCTGCTTAACATATCCATATC 58.884 44.000 0.00 0.00 0.00 1.63
605 608 5.044846 GGGGTCCTGCTTAACATATCCATAT 60.045 44.000 0.00 0.00 0.00 1.78
606 609 4.288626 GGGGTCCTGCTTAACATATCCATA 59.711 45.833 0.00 0.00 0.00 2.74
607 610 3.074538 GGGGTCCTGCTTAACATATCCAT 59.925 47.826 0.00 0.00 0.00 3.41
608 611 2.441750 GGGGTCCTGCTTAACATATCCA 59.558 50.000 0.00 0.00 0.00 3.41
609 612 2.711547 AGGGGTCCTGCTTAACATATCC 59.288 50.000 0.00 0.00 29.57 2.59
610 613 4.593634 AGTAGGGGTCCTGCTTAACATATC 59.406 45.833 0.00 0.00 43.90 1.63
611 614 4.567857 AGTAGGGGTCCTGCTTAACATAT 58.432 43.478 0.00 0.00 43.90 1.78
612 615 3.965347 GAGTAGGGGTCCTGCTTAACATA 59.035 47.826 6.05 0.00 46.22 2.29
613 616 2.772515 GAGTAGGGGTCCTGCTTAACAT 59.227 50.000 6.05 0.00 46.22 2.71
614 617 2.185387 GAGTAGGGGTCCTGCTTAACA 58.815 52.381 6.05 0.00 46.22 2.41
615 618 2.468915 AGAGTAGGGGTCCTGCTTAAC 58.531 52.381 6.05 0.00 46.22 2.01
616 619 2.942604 AGAGTAGGGGTCCTGCTTAA 57.057 50.000 6.05 0.00 46.22 1.85
617 620 2.942604 AAGAGTAGGGGTCCTGCTTA 57.057 50.000 6.05 0.00 46.22 3.09
618 621 2.040412 CAAAAGAGTAGGGGTCCTGCTT 59.960 50.000 6.05 0.63 46.22 3.91
620 623 1.351350 ACAAAAGAGTAGGGGTCCTGC 59.649 52.381 0.00 0.00 36.48 4.85
621 624 2.290323 CCACAAAAGAGTAGGGGTCCTG 60.290 54.545 0.00 0.00 34.61 3.86
622 625 1.985895 CCACAAAAGAGTAGGGGTCCT 59.014 52.381 0.00 0.00 37.71 3.85
623 626 1.982958 TCCACAAAAGAGTAGGGGTCC 59.017 52.381 0.00 0.00 0.00 4.46
624 627 3.782656 TTCCACAAAAGAGTAGGGGTC 57.217 47.619 0.00 0.00 0.00 4.46
625 628 4.741928 ATTTCCACAAAAGAGTAGGGGT 57.258 40.909 0.00 0.00 0.00 4.95
626 629 5.076873 TCAATTTCCACAAAAGAGTAGGGG 58.923 41.667 0.00 0.00 0.00 4.79
627 630 6.648879 TTCAATTTCCACAAAAGAGTAGGG 57.351 37.500 0.00 0.00 0.00 3.53
628 631 7.116805 GCATTTCAATTTCCACAAAAGAGTAGG 59.883 37.037 0.00 0.00 0.00 3.18
629 632 7.116805 GGCATTTCAATTTCCACAAAAGAGTAG 59.883 37.037 0.00 0.00 0.00 2.57
630 633 6.928492 GGCATTTCAATTTCCACAAAAGAGTA 59.072 34.615 0.00 0.00 0.00 2.59
631 634 5.759763 GGCATTTCAATTTCCACAAAAGAGT 59.240 36.000 0.00 0.00 0.00 3.24
632 635 5.107375 CGGCATTTCAATTTCCACAAAAGAG 60.107 40.000 0.00 0.00 0.00 2.85
633 636 4.749099 CGGCATTTCAATTTCCACAAAAGA 59.251 37.500 0.00 0.00 0.00 2.52
634 637 4.611130 GCGGCATTTCAATTTCCACAAAAG 60.611 41.667 0.00 0.00 0.00 2.27
635 638 3.249559 GCGGCATTTCAATTTCCACAAAA 59.750 39.130 0.00 0.00 0.00 2.44
636 639 2.805099 GCGGCATTTCAATTTCCACAAA 59.195 40.909 0.00 0.00 0.00 2.83
637 640 2.224137 TGCGGCATTTCAATTTCCACAA 60.224 40.909 0.00 0.00 0.00 3.33
638 641 1.342496 TGCGGCATTTCAATTTCCACA 59.658 42.857 0.00 0.00 0.00 4.17
639 642 2.077413 TGCGGCATTTCAATTTCCAC 57.923 45.000 0.00 0.00 0.00 4.02
640 643 2.496871 AGATGCGGCATTTCAATTTCCA 59.503 40.909 17.78 0.00 0.00 3.53
641 644 3.169355 AGATGCGGCATTTCAATTTCC 57.831 42.857 17.78 0.56 0.00 3.13
642 645 4.925068 ACTAGATGCGGCATTTCAATTTC 58.075 39.130 17.78 2.20 0.00 2.17
643 646 4.989279 ACTAGATGCGGCATTTCAATTT 57.011 36.364 17.78 0.00 0.00 1.82
644 647 4.989279 AACTAGATGCGGCATTTCAATT 57.011 36.364 17.78 5.85 0.00 2.32
645 648 4.398988 TCAAACTAGATGCGGCATTTCAAT 59.601 37.500 17.78 1.44 0.00 2.57
646 649 3.755905 TCAAACTAGATGCGGCATTTCAA 59.244 39.130 17.78 2.44 0.00 2.69
647 650 3.342719 TCAAACTAGATGCGGCATTTCA 58.657 40.909 17.78 4.56 0.00 2.69
648 651 3.623060 TCTCAAACTAGATGCGGCATTTC 59.377 43.478 17.78 6.18 0.00 2.17
649 652 3.609853 TCTCAAACTAGATGCGGCATTT 58.390 40.909 17.78 14.17 0.00 2.32
650 653 3.266510 TCTCAAACTAGATGCGGCATT 57.733 42.857 17.78 9.56 0.00 3.56
651 654 2.988010 TCTCAAACTAGATGCGGCAT 57.012 45.000 16.65 16.65 0.00 4.40
652 655 2.760634 TTCTCAAACTAGATGCGGCA 57.239 45.000 4.58 4.58 0.00 5.69
653 656 3.185391 GCTATTCTCAAACTAGATGCGGC 59.815 47.826 0.00 0.00 0.00 6.53
654 657 4.626042 AGCTATTCTCAAACTAGATGCGG 58.374 43.478 0.00 0.00 0.00 5.69
655 658 7.881643 AATAGCTATTCTCAAACTAGATGCG 57.118 36.000 13.37 0.00 0.00 4.73
658 661 9.936759 GCCTAAATAGCTATTCTCAAACTAGAT 57.063 33.333 19.11 2.16 0.00 1.98
659 662 9.148879 AGCCTAAATAGCTATTCTCAAACTAGA 57.851 33.333 19.11 0.00 39.29 2.43
660 663 9.202273 CAGCCTAAATAGCTATTCTCAAACTAG 57.798 37.037 19.11 13.89 38.95 2.57
661 664 7.657761 GCAGCCTAAATAGCTATTCTCAAACTA 59.342 37.037 19.11 5.66 38.95 2.24
662 665 6.484977 GCAGCCTAAATAGCTATTCTCAAACT 59.515 38.462 19.11 9.50 38.95 2.66
663 666 6.484977 AGCAGCCTAAATAGCTATTCTCAAAC 59.515 38.462 19.11 7.55 38.95 2.93
664 667 6.595682 AGCAGCCTAAATAGCTATTCTCAAA 58.404 36.000 19.11 3.01 38.95 2.69
665 668 6.179906 AGCAGCCTAAATAGCTATTCTCAA 57.820 37.500 19.11 5.26 38.95 3.02
666 669 5.815233 AGCAGCCTAAATAGCTATTCTCA 57.185 39.130 19.11 7.22 38.95 3.27
667 670 6.226787 TGAAGCAGCCTAAATAGCTATTCTC 58.773 40.000 19.11 8.78 38.95 2.87
668 671 6.179906 TGAAGCAGCCTAAATAGCTATTCT 57.820 37.500 19.11 9.23 38.95 2.40
669 672 7.361628 GGAATGAAGCAGCCTAAATAGCTATTC 60.362 40.741 19.11 7.07 38.95 1.75
670 673 6.432472 GGAATGAAGCAGCCTAAATAGCTATT 59.568 38.462 13.37 13.37 38.95 1.73
671 674 5.942826 GGAATGAAGCAGCCTAAATAGCTAT 59.057 40.000 0.00 0.00 38.95 2.97
672 675 5.163205 TGGAATGAAGCAGCCTAAATAGCTA 60.163 40.000 0.00 0.00 38.95 3.32
673 676 4.140536 GGAATGAAGCAGCCTAAATAGCT 58.859 43.478 0.00 0.00 42.70 3.32
674 677 3.885297 TGGAATGAAGCAGCCTAAATAGC 59.115 43.478 0.00 0.00 0.00 2.97
675 678 4.883585 TGTGGAATGAAGCAGCCTAAATAG 59.116 41.667 0.00 0.00 0.00 1.73
676 679 4.854173 TGTGGAATGAAGCAGCCTAAATA 58.146 39.130 0.00 0.00 0.00 1.40
677 680 3.700538 TGTGGAATGAAGCAGCCTAAAT 58.299 40.909 0.00 0.00 0.00 1.40
678 681 3.153369 TGTGGAATGAAGCAGCCTAAA 57.847 42.857 0.00 0.00 0.00 1.85
679 682 2.877097 TGTGGAATGAAGCAGCCTAA 57.123 45.000 0.00 0.00 0.00 2.69
680 683 2.507058 AGATGTGGAATGAAGCAGCCTA 59.493 45.455 0.00 0.00 0.00 3.93
681 684 1.284198 AGATGTGGAATGAAGCAGCCT 59.716 47.619 0.00 0.00 0.00 4.58
682 685 1.760192 AGATGTGGAATGAAGCAGCC 58.240 50.000 0.00 0.00 0.00 4.85
683 686 3.539604 ACTAGATGTGGAATGAAGCAGC 58.460 45.455 0.00 0.00 0.00 5.25
684 687 5.675575 GCAAACTAGATGTGGAATGAAGCAG 60.676 44.000 0.00 0.00 0.00 4.24
685 688 4.156556 GCAAACTAGATGTGGAATGAAGCA 59.843 41.667 0.00 0.00 0.00 3.91
686 689 4.397417 AGCAAACTAGATGTGGAATGAAGC 59.603 41.667 0.00 0.00 0.00 3.86
687 690 6.149973 TGAAGCAAACTAGATGTGGAATGAAG 59.850 38.462 0.00 0.00 0.00 3.02
688 691 6.003326 TGAAGCAAACTAGATGTGGAATGAA 58.997 36.000 0.00 0.00 0.00 2.57
689 692 5.412594 GTGAAGCAAACTAGATGTGGAATGA 59.587 40.000 0.00 0.00 0.00 2.57
690 693 5.392380 GGTGAAGCAAACTAGATGTGGAATG 60.392 44.000 0.00 0.00 0.00 2.67
691 694 4.702131 GGTGAAGCAAACTAGATGTGGAAT 59.298 41.667 0.00 0.00 0.00 3.01
692 695 4.072131 GGTGAAGCAAACTAGATGTGGAA 58.928 43.478 0.00 0.00 0.00 3.53
693 696 3.559171 GGGTGAAGCAAACTAGATGTGGA 60.559 47.826 0.00 0.00 0.00 4.02
694 697 2.749621 GGGTGAAGCAAACTAGATGTGG 59.250 50.000 0.00 0.00 0.00 4.17
695 698 3.679389 AGGGTGAAGCAAACTAGATGTG 58.321 45.455 0.00 0.00 0.00 3.21
696 699 4.080863 CCTAGGGTGAAGCAAACTAGATGT 60.081 45.833 0.00 0.00 34.50 3.06
697 700 4.162320 TCCTAGGGTGAAGCAAACTAGATG 59.838 45.833 9.46 0.00 34.50 2.90
698 701 4.162509 GTCCTAGGGTGAAGCAAACTAGAT 59.837 45.833 9.46 0.00 34.50 1.98
699 702 3.514309 GTCCTAGGGTGAAGCAAACTAGA 59.486 47.826 9.46 0.00 34.50 2.43
700 703 3.260884 TGTCCTAGGGTGAAGCAAACTAG 59.739 47.826 9.46 0.00 0.00 2.57
701 704 3.007614 GTGTCCTAGGGTGAAGCAAACTA 59.992 47.826 9.46 0.00 0.00 2.24
702 705 2.054799 TGTCCTAGGGTGAAGCAAACT 58.945 47.619 9.46 0.00 0.00 2.66
703 706 2.152016 GTGTCCTAGGGTGAAGCAAAC 58.848 52.381 9.46 0.00 0.00 2.93
704 707 2.054799 AGTGTCCTAGGGTGAAGCAAA 58.945 47.619 9.46 0.00 0.00 3.68
705 708 1.729586 AGTGTCCTAGGGTGAAGCAA 58.270 50.000 9.46 0.00 0.00 3.91
706 709 1.347707 CAAGTGTCCTAGGGTGAAGCA 59.652 52.381 9.46 0.00 0.00 3.91
707 710 1.339151 CCAAGTGTCCTAGGGTGAAGC 60.339 57.143 9.46 0.00 0.00 3.86
708 711 1.339151 GCCAAGTGTCCTAGGGTGAAG 60.339 57.143 9.46 0.00 0.00 3.02
709 712 0.690762 GCCAAGTGTCCTAGGGTGAA 59.309 55.000 9.46 0.00 0.00 3.18
710 713 0.178903 AGCCAAGTGTCCTAGGGTGA 60.179 55.000 9.46 0.00 0.00 4.02
711 714 1.207329 GTAGCCAAGTGTCCTAGGGTG 59.793 57.143 9.46 0.00 33.33 4.61
712 715 1.078989 AGTAGCCAAGTGTCCTAGGGT 59.921 52.381 9.46 0.00 35.74 4.34
713 716 1.867363 AGTAGCCAAGTGTCCTAGGG 58.133 55.000 9.46 0.00 0.00 3.53
714 717 4.279145 TCTAAGTAGCCAAGTGTCCTAGG 58.721 47.826 0.82 0.82 0.00 3.02
715 718 6.472686 AATCTAAGTAGCCAAGTGTCCTAG 57.527 41.667 0.00 0.00 0.00 3.02
716 719 6.869206 AAATCTAAGTAGCCAAGTGTCCTA 57.131 37.500 0.00 0.00 0.00 2.94
717 720 5.763876 AAATCTAAGTAGCCAAGTGTCCT 57.236 39.130 0.00 0.00 0.00 3.85
718 721 6.819397 AAAAATCTAAGTAGCCAAGTGTCC 57.181 37.500 0.00 0.00 0.00 4.02
719 722 8.319143 TGTAAAAATCTAAGTAGCCAAGTGTC 57.681 34.615 0.00 0.00 0.00 3.67
720 723 8.685838 TTGTAAAAATCTAAGTAGCCAAGTGT 57.314 30.769 0.00 0.00 0.00 3.55
725 728 9.959721 AGAGATTTGTAAAAATCTAAGTAGCCA 57.040 29.630 18.93 0.00 46.33 4.75
727 730 9.709600 GCAGAGATTTGTAAAAATCTAAGTAGC 57.290 33.333 18.93 14.33 46.33 3.58
730 733 9.507329 TGAGCAGAGATTTGTAAAAATCTAAGT 57.493 29.630 18.93 6.28 46.33 2.24
733 736 8.443160 CGTTGAGCAGAGATTTGTAAAAATCTA 58.557 33.333 18.93 2.11 46.33 1.98
735 738 7.059945 CACGTTGAGCAGAGATTTGTAAAAATC 59.940 37.037 10.00 10.00 38.98 2.17
736 739 6.857964 CACGTTGAGCAGAGATTTGTAAAAAT 59.142 34.615 0.00 0.00 0.00 1.82
737 740 6.198687 CACGTTGAGCAGAGATTTGTAAAAA 58.801 36.000 0.00 0.00 0.00 1.94
738 741 5.747565 CACGTTGAGCAGAGATTTGTAAAA 58.252 37.500 0.00 0.00 0.00 1.52
739 742 4.319477 GCACGTTGAGCAGAGATTTGTAAA 60.319 41.667 0.00 0.00 0.00 2.01
740 743 3.186409 GCACGTTGAGCAGAGATTTGTAA 59.814 43.478 0.00 0.00 0.00 2.41
741 744 2.736721 GCACGTTGAGCAGAGATTTGTA 59.263 45.455 0.00 0.00 0.00 2.41
742 745 1.532868 GCACGTTGAGCAGAGATTTGT 59.467 47.619 0.00 0.00 0.00 2.83
745 748 2.005451 GATGCACGTTGAGCAGAGATT 58.995 47.619 5.26 0.00 46.36 2.40
760 763 3.517500 TGGTAGGTGTATGAACTGATGCA 59.482 43.478 0.00 0.00 0.00 3.96
762 765 5.084818 TGTGGTAGGTGTATGAACTGATG 57.915 43.478 0.00 0.00 0.00 3.07
792 795 9.533831 AAAGAACATAAATTCAGGTACTTCCAT 57.466 29.630 0.00 0.00 34.60 3.41
878 881 4.332828 TCAGTCCGAGTGTGAGAATAAGA 58.667 43.478 3.12 0.00 0.00 2.10
931 934 0.324943 TACTTGTCTTCCTGGCCTGC 59.675 55.000 3.32 0.00 0.00 4.85
951 954 6.746364 CCTAACTATAGAGTGTCGTTGTTGTC 59.254 42.308 6.78 0.00 35.52 3.18
1238 1258 0.866061 CATGACGATGTCGACGGTCC 60.866 60.000 23.04 8.99 43.02 4.46
1375 1398 0.605589 CTCAACTCCCTGTCGAGCTT 59.394 55.000 0.00 0.00 32.79 3.74
1390 1413 1.884464 GCGATCGCATGAGGCTCAA 60.884 57.895 33.89 5.00 41.67 3.02
1404 1427 2.835431 CCGGTCTCCTCCTGCGAT 60.835 66.667 0.00 0.00 0.00 4.58
1522 1545 2.159282 GCATCCAGAAAGCACATTCCTG 60.159 50.000 0.00 0.00 0.00 3.86
1662 1685 8.435931 AAGGAGATGTATGTGGCACTATAATA 57.564 34.615 19.83 5.24 0.00 0.98
1689 1712 1.899437 GAACAGGGTGGATCCTCGCA 61.899 60.000 26.80 0.00 34.31 5.10
1752 1775 3.375782 AAGTTTGGAAGATGCAGCAAC 57.624 42.857 4.07 0.00 0.00 4.17
1753 1776 3.384146 TGAAAGTTTGGAAGATGCAGCAA 59.616 39.130 4.07 0.00 0.00 3.91
1842 1877 0.445436 CGAGTTCATGAGCAAGCCAC 59.555 55.000 12.41 0.00 0.00 5.01
1875 1910 1.600511 TAGCAACCTGATCGGCGACA 61.601 55.000 13.76 11.83 35.61 4.35
1912 1947 8.695456 ACTCAAGACAAATGGTGTTCTAAAAAT 58.305 29.630 0.00 0.00 41.96 1.82
1917 1953 8.918202 ATTAACTCAAGACAAATGGTGTTCTA 57.082 30.769 0.00 0.00 41.96 2.10
1980 2016 4.142293 TGTGCAGCAGTGAACAAACATTAA 60.142 37.500 0.00 0.00 39.51 1.40
1984 2020 1.135431 GTGTGCAGCAGTGAACAAACA 60.135 47.619 0.00 0.00 44.43 2.83
1995 2031 6.319405 ACATATCATTTATTCAGTGTGCAGCA 59.681 34.615 0.00 0.00 0.00 4.41
2003 2039 9.793252 GCAGTTTTCACATATCATTTATTCAGT 57.207 29.630 0.00 0.00 0.00 3.41
2004 2040 9.791820 TGCAGTTTTCACATATCATTTATTCAG 57.208 29.630 0.00 0.00 0.00 3.02
2012 2048 7.208777 TGTTGTTTGCAGTTTTCACATATCAT 58.791 30.769 0.00 0.00 0.00 2.45
2026 2062 5.570589 GCTAGCTATTTCTTGTTGTTTGCAG 59.429 40.000 7.70 0.00 0.00 4.41
2033 2069 7.096023 CGGTGTATAGCTAGCTATTTCTTGTTG 60.096 40.741 35.66 17.70 39.65 3.33
2049 2085 1.135527 TGCACTACACCGGTGTATAGC 59.864 52.381 38.44 38.44 44.15 2.97
2089 2125 6.993786 TTCAAGATGTGTACAAAGTGTTCA 57.006 33.333 0.00 0.00 0.00 3.18
2110 2146 2.134789 ACCTGCATTCCACTCCATTC 57.865 50.000 0.00 0.00 0.00 2.67
2115 2151 2.113860 TGCTAACCTGCATTCCACTC 57.886 50.000 0.00 0.00 38.12 3.51
2125 2161 1.099879 GCAGGGAGCATGCTAACCTG 61.100 60.000 40.42 40.42 45.91 4.00
2134 2170 2.045926 GGTTGTCGCAGGGAGCAT 60.046 61.111 0.00 0.00 46.13 3.79
2219 2416 4.142730 GCTTGACTTAACCTGCATCAGAAG 60.143 45.833 0.00 0.00 32.44 2.85
2226 2423 4.651778 ACTTATGCTTGACTTAACCTGCA 58.348 39.130 0.00 0.00 34.88 4.41
2227 2424 5.629079 AACTTATGCTTGACTTAACCTGC 57.371 39.130 0.00 0.00 0.00 4.85
2290 2487 8.615878 TGAACACAGTGCTAATTTATGTAGTT 57.384 30.769 0.00 0.00 0.00 2.24
2292 2489 7.693951 GCTTGAACACAGTGCTAATTTATGTAG 59.306 37.037 0.00 0.00 0.00 2.74
2313 2510 6.650807 CCTCTTTTTACTGATGTGTAGCTTGA 59.349 38.462 0.00 0.00 0.00 3.02
2315 2512 6.769512 TCCTCTTTTTACTGATGTGTAGCTT 58.230 36.000 0.00 0.00 0.00 3.74
2449 2647 4.757149 ACTGTTAGAACTCTTTGACATGGC 59.243 41.667 0.00 0.00 0.00 4.40
2456 2654 4.212214 GGAGCACACTGTTAGAACTCTTTG 59.788 45.833 0.00 0.00 0.00 2.77
2474 2678 3.133003 GGTAGCAGTTATTCAGAGGAGCA 59.867 47.826 0.00 0.00 0.00 4.26
2475 2679 3.723260 GGTAGCAGTTATTCAGAGGAGC 58.277 50.000 0.00 0.00 0.00 4.70
2476 2680 3.243569 CCGGTAGCAGTTATTCAGAGGAG 60.244 52.174 0.00 0.00 0.00 3.69
2477 2681 2.693591 CCGGTAGCAGTTATTCAGAGGA 59.306 50.000 0.00 0.00 0.00 3.71
2478 2682 2.803492 GCCGGTAGCAGTTATTCAGAGG 60.803 54.545 1.90 0.00 42.97 3.69
2479 2683 2.474816 GCCGGTAGCAGTTATTCAGAG 58.525 52.381 1.90 0.00 42.97 3.35
2480 2684 2.596904 GCCGGTAGCAGTTATTCAGA 57.403 50.000 1.90 0.00 42.97 3.27
2491 2695 1.607148 AGAAAACAAAGTGCCGGTAGC 59.393 47.619 1.90 0.00 44.14 3.58
2492 2696 3.982576 AAGAAAACAAAGTGCCGGTAG 57.017 42.857 1.90 0.00 0.00 3.18
2493 2697 4.722361 AAAAGAAAACAAAGTGCCGGTA 57.278 36.364 1.90 0.00 0.00 4.02
2494 2698 3.603158 AAAAGAAAACAAAGTGCCGGT 57.397 38.095 1.90 0.00 0.00 5.28
2495 2699 6.418141 CATTTAAAAGAAAACAAAGTGCCGG 58.582 36.000 0.00 0.00 0.00 6.13
2496 2700 6.256757 TCCATTTAAAAGAAAACAAAGTGCCG 59.743 34.615 0.00 0.00 0.00 5.69
2497 2701 7.406553 GTCCATTTAAAAGAAAACAAAGTGCC 58.593 34.615 0.00 0.00 0.00 5.01
2498 2702 7.279981 AGGTCCATTTAAAAGAAAACAAAGTGC 59.720 33.333 0.00 0.00 0.00 4.40
2499 2703 8.603181 CAGGTCCATTTAAAAGAAAACAAAGTG 58.397 33.333 0.00 0.00 0.00 3.16
2500 2704 7.768582 CCAGGTCCATTTAAAAGAAAACAAAGT 59.231 33.333 0.00 0.00 0.00 2.66
2501 2705 7.226523 CCCAGGTCCATTTAAAAGAAAACAAAG 59.773 37.037 0.00 0.00 0.00 2.77
2502 2706 7.051000 CCCAGGTCCATTTAAAAGAAAACAAA 58.949 34.615 0.00 0.00 0.00 2.83
2503 2707 6.587273 CCCAGGTCCATTTAAAAGAAAACAA 58.413 36.000 0.00 0.00 0.00 2.83
2504 2708 5.454045 GCCCAGGTCCATTTAAAAGAAAACA 60.454 40.000 0.00 0.00 0.00 2.83
2505 2709 4.994852 GCCCAGGTCCATTTAAAAGAAAAC 59.005 41.667 0.00 0.00 0.00 2.43
2506 2710 4.262249 CGCCCAGGTCCATTTAAAAGAAAA 60.262 41.667 0.00 0.00 0.00 2.29
2507 2711 3.257127 CGCCCAGGTCCATTTAAAAGAAA 59.743 43.478 0.00 0.00 0.00 2.52
2545 2767 7.763985 AGGTAAGTTTTTGTGAATGTCCTTTTG 59.236 33.333 0.00 0.00 0.00 2.44
2648 2871 9.987726 TGAGAAGAGTACCATATATGATCTCAT 57.012 33.333 14.54 10.60 35.84 2.90
2670 2893 0.545309 AGGGCAACAGCTACCTGAGA 60.545 55.000 0.00 0.00 41.77 3.27
2671 2894 0.107945 GAGGGCAACAGCTACCTGAG 60.108 60.000 0.00 0.00 41.77 3.35
2699 2924 7.061905 GTGCTCACATTGATTCTTCAAGAATTG 59.938 37.037 14.02 10.78 44.41 2.32
2719 2944 1.130561 CGTCAGTAGATCACGTGCTCA 59.869 52.381 20.51 5.01 0.00 4.26
2772 2997 3.370840 TGTATTGCCATTTCAGCCTCT 57.629 42.857 0.00 0.00 0.00 3.69
2800 3025 1.000896 CCCCCACCCTGTTGACATC 60.001 63.158 0.00 0.00 0.00 3.06
2851 3076 1.876799 AGATGAGTCGATGGTAGCGAG 59.123 52.381 0.00 0.00 38.59 5.03
2896 3121 1.493950 CTCGTCGATCATGGCTTGGC 61.494 60.000 0.00 0.00 0.00 4.52
2899 3124 1.107114 AGACTCGTCGATCATGGCTT 58.893 50.000 0.00 0.00 34.09 4.35
2914 3139 2.032681 GCGAAGTTGGGGCAGACT 59.967 61.111 0.00 0.00 0.00 3.24
2939 3164 0.172578 TGGGTAGAAGTGACGCATCG 59.827 55.000 0.00 0.00 35.10 3.84
2970 3197 5.533112 AGAGAGTAGGATTTGGATCAAGGA 58.467 41.667 0.00 0.00 33.77 3.36
2985 3212 5.448360 GCAAGCAAAGGCAAATAGAGAGTAG 60.448 44.000 0.00 0.00 44.61 2.57
2995 3222 1.145819 GGGTGCAAGCAAAGGCAAA 59.854 52.632 0.00 0.00 42.45 3.68
3030 3257 2.430332 CAGCAAAGGAAACAGTTTGGGA 59.570 45.455 2.34 0.00 34.75 4.37
3038 3265 0.386476 CAGCAGCAGCAAAGGAAACA 59.614 50.000 3.17 0.00 45.49 2.83
3146 3373 6.589139 AGGTAATTAAGCACACGTTTCTAGAC 59.411 38.462 0.00 0.00 0.00 2.59
3150 3377 5.529800 ACAAGGTAATTAAGCACACGTTTCT 59.470 36.000 0.00 0.00 0.00 2.52
3151 3378 5.623673 CACAAGGTAATTAAGCACACGTTTC 59.376 40.000 0.00 0.00 0.00 2.78
3169 3396 1.003355 ACCGAGATGCACCACAAGG 60.003 57.895 0.00 0.00 42.21 3.61
3170 3397 1.915614 GCACCGAGATGCACCACAAG 61.916 60.000 0.00 0.00 45.39 3.16
3171 3398 1.965930 GCACCGAGATGCACCACAA 60.966 57.895 0.00 0.00 45.39 3.33
3172 3399 2.358615 GCACCGAGATGCACCACA 60.359 61.111 0.00 0.00 45.39 4.17
3218 3446 4.024387 GCAGTTTTCACGAACATACCAAGA 60.024 41.667 0.00 0.00 31.94 3.02
3273 3501 4.898829 GCATATGGTTTCATGCACTACA 57.101 40.909 4.56 0.00 45.51 2.74
3284 3512 6.476378 AGTGTTCTAGACTTGCATATGGTTT 58.524 36.000 4.56 0.00 0.00 3.27
3314 3542 9.883142 TCCAAACATTTTTGTAAATTGAGAACT 57.117 25.926 3.78 0.00 40.61 3.01
3334 3562 9.885743 CGATGAATAAATTTCGAAATTCCAAAC 57.114 29.630 30.59 21.28 37.62 2.93
3335 3563 8.591312 GCGATGAATAAATTTCGAAATTCCAAA 58.409 29.630 30.59 18.85 37.62 3.28
3336 3564 7.973388 AGCGATGAATAAATTTCGAAATTCCAA 59.027 29.630 30.59 20.89 37.62 3.53
3337 3565 7.479980 AGCGATGAATAAATTTCGAAATTCCA 58.520 30.769 30.59 24.43 37.62 3.53
3338 3566 7.914537 AGCGATGAATAAATTTCGAAATTCC 57.085 32.000 30.59 20.83 37.62 3.01
3339 3567 9.009327 TGAAGCGATGAATAAATTTCGAAATTC 57.991 29.630 30.59 21.33 37.62 2.17
3340 3568 8.909708 TGAAGCGATGAATAAATTTCGAAATT 57.090 26.923 26.51 26.51 40.15 1.82
3341 3569 8.909708 TTGAAGCGATGAATAAATTTCGAAAT 57.090 26.923 17.60 17.60 33.59 2.17
3342 3570 8.735303 TTTGAAGCGATGAATAAATTTCGAAA 57.265 26.923 13.91 13.91 33.59 3.46
3343 3571 8.735303 TTTTGAAGCGATGAATAAATTTCGAA 57.265 26.923 0.00 0.00 33.59 3.71
3344 3572 8.735303 TTTTTGAAGCGATGAATAAATTTCGA 57.265 26.923 0.00 0.00 33.59 3.71
3367 3595 9.230122 ACATGAAGAAAACTCCAAAAACATTTT 57.770 25.926 0.00 0.00 0.00 1.82
3368 3596 8.791327 ACATGAAGAAAACTCCAAAAACATTT 57.209 26.923 0.00 0.00 0.00 2.32
3369 3597 8.791327 AACATGAAGAAAACTCCAAAAACATT 57.209 26.923 0.00 0.00 0.00 2.71
3370 3598 8.260114 AGAACATGAAGAAAACTCCAAAAACAT 58.740 29.630 0.00 0.00 0.00 2.71
3371 3599 7.545265 CAGAACATGAAGAAAACTCCAAAAACA 59.455 33.333 0.00 0.00 0.00 2.83
3372 3600 7.759433 TCAGAACATGAAGAAAACTCCAAAAAC 59.241 33.333 0.00 0.00 34.02 2.43
3373 3601 7.835822 TCAGAACATGAAGAAAACTCCAAAAA 58.164 30.769 0.00 0.00 34.02 1.94
3374 3602 7.403312 TCAGAACATGAAGAAAACTCCAAAA 57.597 32.000 0.00 0.00 34.02 2.44
3375 3603 7.403312 TTCAGAACATGAAGAAAACTCCAAA 57.597 32.000 0.00 0.00 43.09 3.28
3387 3615 4.333095 TCCGAACGTTTTTCAGAACATGAA 59.667 37.500 0.46 0.00 46.31 2.57
3388 3616 3.872182 TCCGAACGTTTTTCAGAACATGA 59.128 39.130 0.46 0.00 35.62 3.07
3389 3617 4.203950 TCCGAACGTTTTTCAGAACATG 57.796 40.909 0.46 0.00 0.00 3.21
3390 3618 4.886247 TTCCGAACGTTTTTCAGAACAT 57.114 36.364 0.46 0.00 0.00 2.71
3391 3619 4.886247 ATTCCGAACGTTTTTCAGAACA 57.114 36.364 0.46 0.00 0.00 3.18
3392 3620 7.847166 ATAAATTCCGAACGTTTTTCAGAAC 57.153 32.000 0.46 0.00 0.00 3.01
3393 3621 8.776470 ACTATAAATTCCGAACGTTTTTCAGAA 58.224 29.630 0.46 2.23 0.00 3.02
3394 3622 8.314143 ACTATAAATTCCGAACGTTTTTCAGA 57.686 30.769 0.46 0.00 0.00 3.27
3395 3623 8.944212 AACTATAAATTCCGAACGTTTTTCAG 57.056 30.769 0.46 2.87 0.00 3.02
3396 3624 9.733219 AAAACTATAAATTCCGAACGTTTTTCA 57.267 25.926 0.46 0.00 31.58 2.69
3397 3625 9.983431 CAAAACTATAAATTCCGAACGTTTTTC 57.017 29.630 0.46 0.00 32.83 2.29
3398 3626 9.518906 ACAAAACTATAAATTCCGAACGTTTTT 57.481 25.926 0.46 0.82 32.83 1.94
3399 3627 9.518906 AACAAAACTATAAATTCCGAACGTTTT 57.481 25.926 0.46 0.00 34.72 2.43
3400 3628 9.172820 GAACAAAACTATAAATTCCGAACGTTT 57.827 29.630 0.46 0.00 0.00 3.60
3401 3629 8.344098 TGAACAAAACTATAAATTCCGAACGTT 58.656 29.630 0.00 0.00 0.00 3.99
3402 3630 7.799914 GTGAACAAAACTATAAATTCCGAACGT 59.200 33.333 0.00 0.00 0.00 3.99
3403 3631 7.799447 TGTGAACAAAACTATAAATTCCGAACG 59.201 33.333 0.00 0.00 0.00 3.95
3404 3632 9.620660 ATGTGAACAAAACTATAAATTCCGAAC 57.379 29.630 0.00 0.00 0.00 3.95
3422 3650 9.897744 TGCAAACAATTTTTAAAAATGTGAACA 57.102 22.222 23.34 15.47 38.53 3.18
3458 3686 9.323985 TGATTTTCTTTGGAAATTTCGAACATT 57.676 25.926 14.34 0.00 40.57 2.71
3459 3687 8.885494 TGATTTTCTTTGGAAATTTCGAACAT 57.115 26.923 14.34 9.27 40.57 2.71
3460 3688 8.763356 CATGATTTTCTTTGGAAATTTCGAACA 58.237 29.630 14.34 8.42 40.57 3.18
3461 3689 7.741652 GCATGATTTTCTTTGGAAATTTCGAAC 59.258 33.333 14.34 3.47 40.57 3.95
3462 3690 7.440556 TGCATGATTTTCTTTGGAAATTTCGAA 59.559 29.630 11.14 11.14 40.57 3.71
3463 3691 6.927936 TGCATGATTTTCTTTGGAAATTTCGA 59.072 30.769 11.95 5.40 40.57 3.71
3464 3692 7.116662 TCTGCATGATTTTCTTTGGAAATTTCG 59.883 33.333 11.95 0.00 40.57 3.46
3465 3693 8.314143 TCTGCATGATTTTCTTTGGAAATTTC 57.686 30.769 9.83 9.83 40.57 2.17
3466 3694 8.680039 TTCTGCATGATTTTCTTTGGAAATTT 57.320 26.923 0.00 0.00 40.57 1.82
3467 3695 8.680039 TTTCTGCATGATTTTCTTTGGAAATT 57.320 26.923 0.00 0.00 40.57 1.82
3468 3696 8.680039 TTTTCTGCATGATTTTCTTTGGAAAT 57.320 26.923 0.00 0.00 40.57 2.17
3469 3697 8.503458 TTTTTCTGCATGATTTTCTTTGGAAA 57.497 26.923 0.00 0.00 39.38 3.13
3470 3698 8.680039 ATTTTTCTGCATGATTTTCTTTGGAA 57.320 26.923 0.00 0.00 0.00 3.53
3471 3699 9.775854 TTATTTTTCTGCATGATTTTCTTTGGA 57.224 25.926 0.00 0.00 0.00 3.53
3472 3700 9.815936 GTTATTTTTCTGCATGATTTTCTTTGG 57.184 29.630 0.00 0.00 0.00 3.28
3475 3703 9.211485 CCAGTTATTTTTCTGCATGATTTTCTT 57.789 29.630 0.00 0.00 0.00 2.52
3476 3704 8.587608 TCCAGTTATTTTTCTGCATGATTTTCT 58.412 29.630 0.00 0.00 0.00 2.52
3477 3705 8.761575 TCCAGTTATTTTTCTGCATGATTTTC 57.238 30.769 0.00 0.00 0.00 2.29
3478 3706 8.370182 ACTCCAGTTATTTTTCTGCATGATTTT 58.630 29.630 0.00 0.00 0.00 1.82
3479 3707 7.899973 ACTCCAGTTATTTTTCTGCATGATTT 58.100 30.769 0.00 0.00 0.00 2.17
3480 3708 7.472334 ACTCCAGTTATTTTTCTGCATGATT 57.528 32.000 0.00 0.00 0.00 2.57
3481 3709 7.472334 AACTCCAGTTATTTTTCTGCATGAT 57.528 32.000 0.00 0.00 36.32 2.45
3482 3710 6.899393 AACTCCAGTTATTTTTCTGCATGA 57.101 33.333 0.00 0.00 36.32 3.07
3483 3711 6.742718 CGTAACTCCAGTTATTTTTCTGCATG 59.257 38.462 2.54 0.00 41.85 4.06
3484 3712 6.653320 TCGTAACTCCAGTTATTTTTCTGCAT 59.347 34.615 2.54 0.00 41.85 3.96
3485 3713 5.992829 TCGTAACTCCAGTTATTTTTCTGCA 59.007 36.000 2.54 0.00 41.85 4.41
3486 3714 6.476243 TCGTAACTCCAGTTATTTTTCTGC 57.524 37.500 2.54 0.00 41.85 4.26
3487 3715 9.893305 AATTTCGTAACTCCAGTTATTTTTCTG 57.107 29.630 2.54 0.00 41.85 3.02
3493 3721 9.673454 GAACAAAATTTCGTAACTCCAGTTATT 57.327 29.630 2.54 0.00 41.85 1.40
3494 3722 8.013378 CGAACAAAATTTCGTAACTCCAGTTAT 58.987 33.333 2.54 0.00 42.78 1.89
3495 3723 7.346695 CGAACAAAATTTCGTAACTCCAGTTA 58.653 34.615 0.00 0.00 42.78 2.24
3496 3724 6.196571 CGAACAAAATTTCGTAACTCCAGTT 58.803 36.000 0.00 0.00 42.78 3.16
3497 3725 5.744490 CGAACAAAATTTCGTAACTCCAGT 58.256 37.500 0.00 0.00 42.78 4.00
3508 3736 8.819152 TTTTCTGAAAATGCGAACAAAATTTC 57.181 26.923 11.33 0.00 32.18 2.17
3549 3777 9.822185 ACAAAATTTAGAAGTGAGAGCATTTTT 57.178 25.926 0.00 0.00 0.00 1.94
3550 3778 9.822185 AACAAAATTTAGAAGTGAGAGCATTTT 57.178 25.926 0.00 0.00 0.00 1.82
3551 3779 9.822185 AAACAAAATTTAGAAGTGAGAGCATTT 57.178 25.926 0.00 0.00 0.00 2.32
3552 3780 9.252962 CAAACAAAATTTAGAAGTGAGAGCATT 57.747 29.630 0.00 0.00 0.00 3.56
3553 3781 8.416329 ACAAACAAAATTTAGAAGTGAGAGCAT 58.584 29.630 0.00 0.00 0.00 3.79
3554 3782 7.701924 CACAAACAAAATTTAGAAGTGAGAGCA 59.298 33.333 0.00 0.00 0.00 4.26
3555 3783 7.702348 ACACAAACAAAATTTAGAAGTGAGAGC 59.298 33.333 13.92 0.00 0.00 4.09
3556 3784 9.573133 AACACAAACAAAATTTAGAAGTGAGAG 57.427 29.630 13.92 0.00 0.00 3.20
3557 3785 9.567848 GAACACAAACAAAATTTAGAAGTGAGA 57.432 29.630 13.92 0.00 0.00 3.27
3558 3786 9.573133 AGAACACAAACAAAATTTAGAAGTGAG 57.427 29.630 13.92 2.84 0.00 3.51
3559 3787 9.352784 CAGAACACAAACAAAATTTAGAAGTGA 57.647 29.630 13.92 0.00 0.00 3.41
3560 3788 9.352784 TCAGAACACAAACAAAATTTAGAAGTG 57.647 29.630 0.00 0.54 0.00 3.16
3561 3789 9.921637 TTCAGAACACAAACAAAATTTAGAAGT 57.078 25.926 0.00 0.00 0.00 3.01
3663 3891 7.334171 CACAAAATTTGAACCTCCAGACTTTTT 59.666 33.333 13.19 0.00 0.00 1.94
3664 3892 6.818142 CACAAAATTTGAACCTCCAGACTTTT 59.182 34.615 13.19 0.00 0.00 2.27
3665 3893 6.070824 ACACAAAATTTGAACCTCCAGACTTT 60.071 34.615 13.19 0.00 0.00 2.66
3666 3894 5.422012 ACACAAAATTTGAACCTCCAGACTT 59.578 36.000 13.19 0.00 0.00 3.01
3667 3895 4.956075 ACACAAAATTTGAACCTCCAGACT 59.044 37.500 13.19 0.00 0.00 3.24
3668 3896 5.043248 CACACAAAATTTGAACCTCCAGAC 58.957 41.667 13.19 0.00 0.00 3.51
3669 3897 4.709397 ACACACAAAATTTGAACCTCCAGA 59.291 37.500 13.19 0.00 0.00 3.86
3670 3898 5.009854 ACACACAAAATTTGAACCTCCAG 57.990 39.130 13.19 0.00 0.00 3.86
3671 3899 5.413309 AACACACAAAATTTGAACCTCCA 57.587 34.783 13.19 0.00 0.00 3.86
3672 3900 6.735678 AAAACACACAAAATTTGAACCTCC 57.264 33.333 13.19 0.00 0.00 4.30
3673 3901 6.953189 CGAAAAACACACAAAATTTGAACCTC 59.047 34.615 13.19 0.00 0.00 3.85
3674 3902 6.647067 TCGAAAAACACACAAAATTTGAACCT 59.353 30.769 13.19 0.00 0.00 3.50
3675 3903 6.822506 TCGAAAAACACACAAAATTTGAACC 58.177 32.000 13.19 0.00 0.00 3.62
3676 3904 8.700994 TTTCGAAAAACACACAAAATTTGAAC 57.299 26.923 13.19 0.00 0.00 3.18
3677 3905 9.884465 AATTTCGAAAAACACACAAAATTTGAA 57.116 22.222 15.66 0.00 0.00 2.69
3678 3906 9.884465 AAATTTCGAAAAACACACAAAATTTGA 57.116 22.222 15.66 0.00 35.00 2.69
3679 3907 9.920043 CAAATTTCGAAAAACACACAAAATTTG 57.080 25.926 15.66 11.79 41.85 2.32
3680 3908 9.670719 ACAAATTTCGAAAAACACACAAAATTT 57.329 22.222 15.66 3.45 36.05 1.82
3681 3909 9.670719 AACAAATTTCGAAAAACACACAAAATT 57.329 22.222 15.66 0.00 0.00 1.82
3682 3910 9.323963 GAACAAATTTCGAAAAACACACAAAAT 57.676 25.926 15.66 0.00 0.00 1.82
3683 3911 8.700994 GAACAAATTTCGAAAAACACACAAAA 57.299 26.923 15.66 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.