Multiple sequence alignment - TraesCS4A01G339500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G339500 chr4A 100.000 2811 0 0 1 2811 621167849 621170659 0.000000e+00 5192.0
1 TraesCS4A01G339500 chr4A 100.000 172 0 0 3020 3191 621170868 621171039 5.140000e-83 318.0
2 TraesCS4A01G339500 chr4A 84.722 72 8 3 720 790 713378647 713378578 5.710000e-08 69.4
3 TraesCS4A01G339500 chr7B 91.524 1227 67 15 985 2199 192094002 192092801 0.000000e+00 1655.0
4 TraesCS4A01G339500 chr7B 90.309 1228 73 17 985 2199 644536697 644535503 0.000000e+00 1567.0
5 TraesCS4A01G339500 chr7B 89.024 328 24 5 985 1312 651735648 651735963 2.310000e-106 396.0
6 TraesCS4A01G339500 chr7B 88.110 328 27 4 985 1312 651560636 651560951 2.320000e-101 379.0
7 TraesCS4A01G339500 chr5D 90.537 1247 79 16 972 2199 549629674 549630900 0.000000e+00 1613.0
8 TraesCS4A01G339500 chr5D 89.725 545 24 11 2289 2810 549631063 549631598 0.000000e+00 667.0
9 TraesCS4A01G339500 chr5D 95.270 148 7 0 3044 3191 549631670 549631817 5.320000e-58 235.0
10 TraesCS4A01G339500 chr5D 92.593 81 6 0 554 634 160871048 160870968 2.010000e-22 117.0
11 TraesCS4A01G339500 chr5D 92.593 81 6 0 555 635 432144089 432144169 2.010000e-22 117.0
12 TraesCS4A01G339500 chr5D 91.463 82 7 0 554 635 312135984 312135903 2.600000e-21 113.0
13 TraesCS4A01G339500 chr5D 96.552 58 1 1 2202 2259 549630928 549630984 9.420000e-16 95.3
14 TraesCS4A01G339500 chr5B 90.309 1228 73 17 985 2199 680714769 680713575 0.000000e+00 1567.0
15 TraesCS4A01G339500 chr5B 86.667 1440 116 37 804 2199 701172546 701173953 0.000000e+00 1526.0
16 TraesCS4A01G339500 chr5B 92.937 538 30 5 2267 2803 701174079 701174609 0.000000e+00 776.0
17 TraesCS4A01G339500 chr5B 84.514 381 44 2 188 553 701171805 701172185 2.340000e-96 363.0
18 TraesCS4A01G339500 chr5B 93.846 65 3 1 2202 2266 701173981 701174044 2.620000e-16 97.1
19 TraesCS4A01G339500 chr6A 90.139 1227 76 17 985 2199 479106227 479107420 0.000000e+00 1554.0
20 TraesCS4A01G339500 chr6A 79.744 390 57 11 181 553 309866137 309865753 2.440000e-66 263.0
21 TraesCS4A01G339500 chr6A 92.265 181 12 2 3 182 146946964 146947143 4.080000e-64 255.0
22 TraesCS4A01G339500 chr6A 91.463 82 5 1 555 636 20212036 20212115 9.360000e-21 111.0
23 TraesCS4A01G339500 chr3B 88.673 927 71 18 985 1904 799006548 799005649 0.000000e+00 1099.0
24 TraesCS4A01G339500 chr3B 88.112 429 39 4 985 1413 24502631 24502215 1.710000e-137 499.0
25 TraesCS4A01G339500 chr3B 95.833 168 6 1 2032 2199 799005648 799005482 1.460000e-68 270.0
26 TraesCS4A01G339500 chr3B 83.730 252 40 1 303 553 250804547 250804798 1.480000e-58 237.0
27 TraesCS4A01G339500 chr4B 88.110 328 27 4 985 1312 667298112 667298427 2.320000e-101 379.0
28 TraesCS4A01G339500 chr4B 86.280 328 33 4 985 1312 667282953 667283268 2.360000e-91 346.0
29 TraesCS4A01G339500 chr4B 92.857 182 10 3 3 182 86536308 86536488 8.780000e-66 261.0
30 TraesCS4A01G339500 chr2A 88.110 328 27 6 985 1312 500244355 500244670 2.320000e-101 379.0
31 TraesCS4A01G339500 chr2A 91.667 84 7 0 552 635 156622360 156622443 2.010000e-22 117.0
32 TraesCS4A01G339500 chr3D 77.279 691 97 31 1219 1905 523262498 523263132 5.060000e-93 351.0
33 TraesCS4A01G339500 chr3D 84.064 251 40 0 303 553 609559237 609559487 3.180000e-60 243.0
34 TraesCS4A01G339500 chr6B 84.024 338 34 11 985 1312 608037285 608037612 1.110000e-79 307.0
35 TraesCS4A01G339500 chr6B 91.489 188 12 4 3 187 296023832 296023646 4.080000e-64 255.0
36 TraesCS4A01G339500 chr6B 91.071 168 14 1 985 1152 52022191 52022357 3.200000e-55 226.0
37 TraesCS4A01G339500 chr2B 93.514 185 9 3 1 183 172626682 172626865 4.060000e-69 272.0
38 TraesCS4A01G339500 chr6D 80.106 377 53 11 181 553 202263262 202263620 8.780000e-66 261.0
39 TraesCS4A01G339500 chr6D 92.857 182 10 3 3 182 459334495 459334315 8.780000e-66 261.0
40 TraesCS4A01G339500 chr6D 92.350 183 11 3 2 182 195108990 195109171 1.140000e-64 257.0
41 TraesCS4A01G339500 chr1A 92.857 182 10 3 3 182 282838726 282838546 8.780000e-66 261.0
42 TraesCS4A01G339500 chr4D 92.391 184 11 3 1 182 26420653 26420471 3.160000e-65 259.0
43 TraesCS4A01G339500 chr1B 91.053 190 13 4 3 190 277909446 277909633 1.470000e-63 254.0
44 TraesCS4A01G339500 chr1B 92.593 81 6 0 555 635 549719639 549719559 2.010000e-22 117.0
45 TraesCS4A01G339500 chr2D 73.694 517 81 24 1343 1856 595906485 595906949 1.980000e-32 150.0
46 TraesCS4A01G339500 chr2D 92.683 82 6 0 554 635 446347858 446347777 5.590000e-23 119.0
47 TraesCS4A01G339500 chr2D 92.405 79 6 0 555 633 446347668 446347590 2.600000e-21 113.0
48 TraesCS4A01G339500 chr5A 92.593 81 6 0 555 635 495049955 495049875 2.010000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G339500 chr4A 621167849 621171039 3190 False 2755.000 5192 100.000 1 3191 2 chr4A.!!$F1 3190
1 TraesCS4A01G339500 chr7B 192092801 192094002 1201 True 1655.000 1655 91.524 985 2199 1 chr7B.!!$R1 1214
2 TraesCS4A01G339500 chr7B 644535503 644536697 1194 True 1567.000 1567 90.309 985 2199 1 chr7B.!!$R2 1214
3 TraesCS4A01G339500 chr5D 549629674 549631817 2143 False 652.575 1613 93.021 972 3191 4 chr5D.!!$F2 2219
4 TraesCS4A01G339500 chr5B 680713575 680714769 1194 True 1567.000 1567 90.309 985 2199 1 chr5B.!!$R1 1214
5 TraesCS4A01G339500 chr5B 701171805 701174609 2804 False 690.525 1526 89.491 188 2803 4 chr5B.!!$F1 2615
6 TraesCS4A01G339500 chr6A 479106227 479107420 1193 False 1554.000 1554 90.139 985 2199 1 chr6A.!!$F3 1214
7 TraesCS4A01G339500 chr3B 799005482 799006548 1066 True 684.500 1099 92.253 985 2199 2 chr3B.!!$R2 1214
8 TraesCS4A01G339500 chr3D 523262498 523263132 634 False 351.000 351 77.279 1219 1905 1 chr3D.!!$F1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
959 1159 0.042188 CGACGCTGTTGGAGTGTTTG 60.042 55.0 0.0 0.0 45.82 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2602 2948 0.396556 AGTGAACCAACCAACCCACC 60.397 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.340537 ACTTGTTACTTGTTACTCGTTGTG 57.659 37.500 0.00 0.00 0.00 3.33
24 25 6.101332 ACTTGTTACTTGTTACTCGTTGTGA 58.899 36.000 0.00 0.00 0.00 3.58
25 26 6.591062 ACTTGTTACTTGTTACTCGTTGTGAA 59.409 34.615 0.00 0.00 0.00 3.18
26 27 7.279313 ACTTGTTACTTGTTACTCGTTGTGAAT 59.721 33.333 0.00 0.00 0.00 2.57
27 28 7.542534 TGTTACTTGTTACTCGTTGTGAATT 57.457 32.000 0.00 0.00 0.00 2.17
28 29 8.645730 TGTTACTTGTTACTCGTTGTGAATTA 57.354 30.769 0.00 0.00 0.00 1.40
29 30 8.542132 TGTTACTTGTTACTCGTTGTGAATTAC 58.458 33.333 0.00 0.00 0.00 1.89
30 31 6.535274 ACTTGTTACTCGTTGTGAATTACC 57.465 37.500 0.00 0.00 0.00 2.85
31 32 6.285990 ACTTGTTACTCGTTGTGAATTACCT 58.714 36.000 0.00 0.00 0.00 3.08
32 33 6.764560 ACTTGTTACTCGTTGTGAATTACCTT 59.235 34.615 0.00 0.00 0.00 3.50
33 34 6.533819 TGTTACTCGTTGTGAATTACCTTG 57.466 37.500 0.00 0.00 0.00 3.61
34 35 5.049954 TGTTACTCGTTGTGAATTACCTTGC 60.050 40.000 0.00 0.00 0.00 4.01
35 36 2.812011 ACTCGTTGTGAATTACCTTGCC 59.188 45.455 0.00 0.00 0.00 4.52
36 37 2.811431 CTCGTTGTGAATTACCTTGCCA 59.189 45.455 0.00 0.00 0.00 4.92
37 38 2.550606 TCGTTGTGAATTACCTTGCCAC 59.449 45.455 0.00 0.00 0.00 5.01
38 39 2.351350 CGTTGTGAATTACCTTGCCACC 60.351 50.000 0.00 0.00 0.00 4.61
39 40 2.625790 GTTGTGAATTACCTTGCCACCA 59.374 45.455 0.00 0.00 0.00 4.17
40 41 2.950781 TGTGAATTACCTTGCCACCAA 58.049 42.857 0.00 0.00 0.00 3.67
41 42 3.300388 TGTGAATTACCTTGCCACCAAA 58.700 40.909 0.00 0.00 0.00 3.28
42 43 3.068873 TGTGAATTACCTTGCCACCAAAC 59.931 43.478 0.00 0.00 0.00 2.93
43 44 3.320826 GTGAATTACCTTGCCACCAAACT 59.679 43.478 0.00 0.00 0.00 2.66
44 45 4.521256 GTGAATTACCTTGCCACCAAACTA 59.479 41.667 0.00 0.00 0.00 2.24
45 46 5.185056 GTGAATTACCTTGCCACCAAACTAT 59.815 40.000 0.00 0.00 0.00 2.12
46 47 5.417580 TGAATTACCTTGCCACCAAACTATC 59.582 40.000 0.00 0.00 0.00 2.08
47 48 2.215942 ACCTTGCCACCAAACTATCC 57.784 50.000 0.00 0.00 0.00 2.59
48 49 1.710809 ACCTTGCCACCAAACTATCCT 59.289 47.619 0.00 0.00 0.00 3.24
49 50 2.094675 CCTTGCCACCAAACTATCCTG 58.905 52.381 0.00 0.00 0.00 3.86
50 51 2.555227 CCTTGCCACCAAACTATCCTGT 60.555 50.000 0.00 0.00 0.00 4.00
51 52 2.969821 TGCCACCAAACTATCCTGTT 57.030 45.000 0.00 0.00 0.00 3.16
52 53 4.331968 CTTGCCACCAAACTATCCTGTTA 58.668 43.478 0.00 0.00 0.00 2.41
53 54 3.681593 TGCCACCAAACTATCCTGTTAC 58.318 45.455 0.00 0.00 0.00 2.50
54 55 3.014623 GCCACCAAACTATCCTGTTACC 58.985 50.000 0.00 0.00 0.00 2.85
55 56 3.267483 CCACCAAACTATCCTGTTACCG 58.733 50.000 0.00 0.00 0.00 4.02
56 57 3.055675 CCACCAAACTATCCTGTTACCGA 60.056 47.826 0.00 0.00 0.00 4.69
57 58 4.383770 CCACCAAACTATCCTGTTACCGAT 60.384 45.833 0.00 0.00 0.00 4.18
58 59 5.163385 CCACCAAACTATCCTGTTACCGATA 60.163 44.000 0.00 0.00 0.00 2.92
59 60 6.463897 CCACCAAACTATCCTGTTACCGATAT 60.464 42.308 0.00 0.00 0.00 1.63
60 61 6.990349 CACCAAACTATCCTGTTACCGATATT 59.010 38.462 0.00 0.00 0.00 1.28
61 62 7.497909 CACCAAACTATCCTGTTACCGATATTT 59.502 37.037 0.00 0.00 0.00 1.40
62 63 8.050930 ACCAAACTATCCTGTTACCGATATTTT 58.949 33.333 0.00 0.00 29.09 1.82
63 64 8.557029 CCAAACTATCCTGTTACCGATATTTTC 58.443 37.037 0.00 0.00 27.51 2.29
64 65 9.104965 CAAACTATCCTGTTACCGATATTTTCA 57.895 33.333 0.00 0.00 27.51 2.69
65 66 8.888579 AACTATCCTGTTACCGATATTTTCAG 57.111 34.615 0.00 0.00 0.00 3.02
66 67 8.019656 ACTATCCTGTTACCGATATTTTCAGT 57.980 34.615 0.00 0.00 0.00 3.41
67 68 7.926555 ACTATCCTGTTACCGATATTTTCAGTG 59.073 37.037 0.00 0.00 0.00 3.66
68 69 4.873827 TCCTGTTACCGATATTTTCAGTGC 59.126 41.667 0.00 0.00 0.00 4.40
69 70 4.876107 CCTGTTACCGATATTTTCAGTGCT 59.124 41.667 0.00 0.00 0.00 4.40
70 71 5.354234 CCTGTTACCGATATTTTCAGTGCTT 59.646 40.000 0.00 0.00 0.00 3.91
71 72 6.176975 TGTTACCGATATTTTCAGTGCTTG 57.823 37.500 0.00 0.00 0.00 4.01
72 73 3.764885 ACCGATATTTTCAGTGCTTGC 57.235 42.857 0.00 0.00 0.00 4.01
73 74 3.081061 ACCGATATTTTCAGTGCTTGCA 58.919 40.909 0.00 0.00 0.00 4.08
74 75 3.127548 ACCGATATTTTCAGTGCTTGCAG 59.872 43.478 0.00 0.00 0.00 4.41
75 76 3.374988 CCGATATTTTCAGTGCTTGCAGA 59.625 43.478 0.00 0.00 0.00 4.26
76 77 4.495349 CCGATATTTTCAGTGCTTGCAGAG 60.495 45.833 0.00 0.00 0.00 3.35
77 78 4.330894 CGATATTTTCAGTGCTTGCAGAGA 59.669 41.667 0.00 0.00 0.00 3.10
78 79 5.163824 CGATATTTTCAGTGCTTGCAGAGAA 60.164 40.000 0.00 0.75 0.00 2.87
79 80 6.457934 CGATATTTTCAGTGCTTGCAGAGAAT 60.458 38.462 9.42 7.68 0.00 2.40
80 81 7.254556 CGATATTTTCAGTGCTTGCAGAGAATA 60.255 37.037 9.42 9.14 0.00 1.75
81 82 5.362556 TTTTCAGTGCTTGCAGAGAATAC 57.637 39.130 9.42 0.00 0.00 1.89
82 83 2.977914 TCAGTGCTTGCAGAGAATACC 58.022 47.619 0.00 0.00 0.00 2.73
83 84 2.568956 TCAGTGCTTGCAGAGAATACCT 59.431 45.455 0.00 0.00 0.00 3.08
84 85 3.008375 TCAGTGCTTGCAGAGAATACCTT 59.992 43.478 0.00 0.00 0.00 3.50
85 86 4.222810 TCAGTGCTTGCAGAGAATACCTTA 59.777 41.667 0.00 0.00 0.00 2.69
86 87 4.331168 CAGTGCTTGCAGAGAATACCTTAC 59.669 45.833 0.00 0.00 0.00 2.34
87 88 4.223923 AGTGCTTGCAGAGAATACCTTACT 59.776 41.667 0.00 0.00 0.00 2.24
88 89 4.331168 GTGCTTGCAGAGAATACCTTACTG 59.669 45.833 0.00 0.00 0.00 2.74
89 90 4.222810 TGCTTGCAGAGAATACCTTACTGA 59.777 41.667 0.00 0.00 0.00 3.41
90 91 5.178797 GCTTGCAGAGAATACCTTACTGAA 58.821 41.667 0.00 0.00 0.00 3.02
91 92 5.643777 GCTTGCAGAGAATACCTTACTGAAA 59.356 40.000 0.00 0.00 0.00 2.69
92 93 6.149474 GCTTGCAGAGAATACCTTACTGAAAA 59.851 38.462 0.00 0.00 0.00 2.29
93 94 7.435068 TTGCAGAGAATACCTTACTGAAAAC 57.565 36.000 0.00 0.00 0.00 2.43
94 95 5.938125 TGCAGAGAATACCTTACTGAAAACC 59.062 40.000 0.00 0.00 0.00 3.27
95 96 5.063564 GCAGAGAATACCTTACTGAAAACCG 59.936 44.000 0.00 0.00 0.00 4.44
96 97 5.063564 CAGAGAATACCTTACTGAAAACCGC 59.936 44.000 0.00 0.00 0.00 5.68
97 98 5.046520 AGAGAATACCTTACTGAAAACCGCT 60.047 40.000 0.00 0.00 0.00 5.52
98 99 6.154021 AGAGAATACCTTACTGAAAACCGCTA 59.846 38.462 0.00 0.00 0.00 4.26
99 100 6.338937 AGAATACCTTACTGAAAACCGCTAG 58.661 40.000 0.00 0.00 0.00 3.42
100 101 5.672421 ATACCTTACTGAAAACCGCTAGT 57.328 39.130 0.00 0.00 0.00 2.57
101 102 3.922910 ACCTTACTGAAAACCGCTAGTC 58.077 45.455 0.00 0.00 0.00 2.59
102 103 3.322828 ACCTTACTGAAAACCGCTAGTCA 59.677 43.478 0.00 0.00 0.00 3.41
103 104 4.020485 ACCTTACTGAAAACCGCTAGTCAT 60.020 41.667 0.00 0.00 0.00 3.06
104 105 4.935808 CCTTACTGAAAACCGCTAGTCATT 59.064 41.667 0.00 0.00 0.00 2.57
105 106 5.411669 CCTTACTGAAAACCGCTAGTCATTT 59.588 40.000 0.00 0.00 0.00 2.32
106 107 6.402226 CCTTACTGAAAACCGCTAGTCATTTC 60.402 42.308 0.00 0.00 0.00 2.17
107 108 3.751698 ACTGAAAACCGCTAGTCATTTCC 59.248 43.478 0.00 0.00 30.80 3.13
108 109 4.003648 CTGAAAACCGCTAGTCATTTCCT 58.996 43.478 0.00 0.00 30.80 3.36
109 110 4.394729 TGAAAACCGCTAGTCATTTCCTT 58.605 39.130 0.00 0.00 30.80 3.36
110 111 4.454504 TGAAAACCGCTAGTCATTTCCTTC 59.545 41.667 0.00 0.00 30.80 3.46
111 112 3.983044 AACCGCTAGTCATTTCCTTCT 57.017 42.857 0.00 0.00 0.00 2.85
112 113 5.416271 AAACCGCTAGTCATTTCCTTCTA 57.584 39.130 0.00 0.00 0.00 2.10
113 114 4.388378 ACCGCTAGTCATTTCCTTCTAC 57.612 45.455 0.00 0.00 0.00 2.59
114 115 4.024670 ACCGCTAGTCATTTCCTTCTACT 58.975 43.478 0.00 0.00 0.00 2.57
115 116 4.098196 ACCGCTAGTCATTTCCTTCTACTC 59.902 45.833 0.00 0.00 0.00 2.59
116 117 4.500035 CCGCTAGTCATTTCCTTCTACTCC 60.500 50.000 0.00 0.00 0.00 3.85
117 118 4.339814 CGCTAGTCATTTCCTTCTACTCCT 59.660 45.833 0.00 0.00 0.00 3.69
118 119 5.506649 CGCTAGTCATTTCCTTCTACTCCTC 60.507 48.000 0.00 0.00 0.00 3.71
119 120 4.993029 AGTCATTTCCTTCTACTCCTCG 57.007 45.455 0.00 0.00 0.00 4.63
120 121 4.345854 AGTCATTTCCTTCTACTCCTCGT 58.654 43.478 0.00 0.00 0.00 4.18
121 122 4.773149 AGTCATTTCCTTCTACTCCTCGTT 59.227 41.667 0.00 0.00 0.00 3.85
122 123 4.865365 GTCATTTCCTTCTACTCCTCGTTG 59.135 45.833 0.00 0.00 0.00 4.10
123 124 3.955650 TTTCCTTCTACTCCTCGTTGG 57.044 47.619 0.00 0.00 37.10 3.77
124 125 1.848652 TCCTTCTACTCCTCGTTGGG 58.151 55.000 0.00 0.00 36.20 4.12
125 126 1.076677 TCCTTCTACTCCTCGTTGGGT 59.923 52.381 0.00 0.00 36.20 4.51
126 127 1.900486 CCTTCTACTCCTCGTTGGGTT 59.100 52.381 0.00 0.00 36.20 4.11
127 128 2.094130 CCTTCTACTCCTCGTTGGGTTC 60.094 54.545 0.00 0.00 36.20 3.62
128 129 1.171308 TCTACTCCTCGTTGGGTTCG 58.829 55.000 0.00 0.00 36.20 3.95
129 130 1.171308 CTACTCCTCGTTGGGTTCGA 58.829 55.000 0.00 0.00 36.20 3.71
130 131 0.883833 TACTCCTCGTTGGGTTCGAC 59.116 55.000 0.00 0.00 36.20 4.20
131 132 1.111116 ACTCCTCGTTGGGTTCGACA 61.111 55.000 0.00 0.00 36.20 4.35
132 133 0.666577 CTCCTCGTTGGGTTCGACAC 60.667 60.000 0.00 0.00 36.20 3.67
133 134 1.111116 TCCTCGTTGGGTTCGACACT 61.111 55.000 0.00 0.00 36.20 3.55
134 135 0.666577 CCTCGTTGGGTTCGACACTC 60.667 60.000 0.00 0.00 33.71 3.51
135 136 0.314302 CTCGTTGGGTTCGACACTCT 59.686 55.000 0.00 0.00 33.71 3.24
136 137 0.748450 TCGTTGGGTTCGACACTCTT 59.252 50.000 0.00 0.00 32.30 2.85
137 138 1.955778 TCGTTGGGTTCGACACTCTTA 59.044 47.619 0.00 0.00 32.30 2.10
138 139 2.056577 CGTTGGGTTCGACACTCTTAC 58.943 52.381 0.00 0.00 0.00 2.34
139 140 2.288030 CGTTGGGTTCGACACTCTTACT 60.288 50.000 0.00 0.00 0.00 2.24
140 141 3.725490 GTTGGGTTCGACACTCTTACTT 58.275 45.455 0.00 0.00 0.00 2.24
141 142 4.557296 CGTTGGGTTCGACACTCTTACTTA 60.557 45.833 0.00 0.00 0.00 2.24
142 143 5.476614 GTTGGGTTCGACACTCTTACTTAT 58.523 41.667 0.00 0.00 0.00 1.73
143 144 5.320549 TGGGTTCGACACTCTTACTTATC 57.679 43.478 0.00 0.00 0.00 1.75
144 145 4.142534 TGGGTTCGACACTCTTACTTATCG 60.143 45.833 0.00 0.00 0.00 2.92
145 146 4.095483 GGGTTCGACACTCTTACTTATCGA 59.905 45.833 0.00 0.00 36.85 3.59
146 147 5.392380 GGGTTCGACACTCTTACTTATCGAA 60.392 44.000 2.99 2.99 43.90 3.71
147 148 6.088824 GGTTCGACACTCTTACTTATCGAAA 58.911 40.000 8.30 0.00 46.48 3.46
148 149 6.250951 GGTTCGACACTCTTACTTATCGAAAG 59.749 42.308 8.30 0.00 46.48 2.62
149 150 5.877031 TCGACACTCTTACTTATCGAAAGG 58.123 41.667 10.65 0.00 35.80 3.11
150 151 4.499758 CGACACTCTTACTTATCGAAAGGC 59.500 45.833 10.65 0.00 0.00 4.35
151 152 5.652518 GACACTCTTACTTATCGAAAGGCT 58.347 41.667 10.65 0.00 0.00 4.58
152 153 6.457934 CGACACTCTTACTTATCGAAAGGCTA 60.458 42.308 10.65 0.00 0.00 3.93
153 154 6.562518 ACACTCTTACTTATCGAAAGGCTAC 58.437 40.000 10.65 0.00 0.00 3.58
154 155 6.152323 ACACTCTTACTTATCGAAAGGCTACA 59.848 38.462 10.65 0.00 0.00 2.74
155 156 7.033791 CACTCTTACTTATCGAAAGGCTACAA 58.966 38.462 10.65 0.00 0.00 2.41
156 157 7.707035 CACTCTTACTTATCGAAAGGCTACAAT 59.293 37.037 10.65 0.00 0.00 2.71
157 158 8.258708 ACTCTTACTTATCGAAAGGCTACAATT 58.741 33.333 10.65 0.00 0.00 2.32
158 159 8.420374 TCTTACTTATCGAAAGGCTACAATTG 57.580 34.615 3.24 3.24 0.00 2.32
159 160 8.255206 TCTTACTTATCGAAAGGCTACAATTGA 58.745 33.333 13.59 0.00 0.00 2.57
160 161 8.958119 TTACTTATCGAAAGGCTACAATTGAT 57.042 30.769 13.59 0.00 0.00 2.57
161 162 7.484035 ACTTATCGAAAGGCTACAATTGATC 57.516 36.000 13.59 0.17 0.00 2.92
162 163 6.483640 ACTTATCGAAAGGCTACAATTGATCC 59.516 38.462 13.59 9.59 0.00 3.36
163 164 3.541632 TCGAAAGGCTACAATTGATCCC 58.458 45.455 13.59 8.53 0.00 3.85
164 165 3.199946 TCGAAAGGCTACAATTGATCCCT 59.800 43.478 13.59 10.67 0.00 4.20
165 166 4.407621 TCGAAAGGCTACAATTGATCCCTA 59.592 41.667 13.59 0.00 0.00 3.53
166 167 5.071788 TCGAAAGGCTACAATTGATCCCTAT 59.928 40.000 13.59 3.06 0.00 2.57
167 168 6.269077 TCGAAAGGCTACAATTGATCCCTATA 59.731 38.462 13.59 0.00 0.00 1.31
168 169 6.369065 CGAAAGGCTACAATTGATCCCTATAC 59.631 42.308 13.59 7.78 0.00 1.47
169 170 7.394144 AAAGGCTACAATTGATCCCTATACT 57.606 36.000 13.59 0.00 0.00 2.12
170 171 7.394144 AAGGCTACAATTGATCCCTATACTT 57.606 36.000 13.59 1.45 0.00 2.24
171 172 6.773638 AGGCTACAATTGATCCCTATACTTG 58.226 40.000 13.59 0.00 0.00 3.16
172 173 6.330250 AGGCTACAATTGATCCCTATACTTGT 59.670 38.462 13.59 0.00 0.00 3.16
173 174 6.428159 GGCTACAATTGATCCCTATACTTGTG 59.572 42.308 13.59 0.00 0.00 3.33
174 175 6.428159 GCTACAATTGATCCCTATACTTGTGG 59.572 42.308 13.59 0.00 0.00 4.17
175 176 5.694995 ACAATTGATCCCTATACTTGTGGG 58.305 41.667 13.59 0.00 42.20 4.61
176 177 5.193728 ACAATTGATCCCTATACTTGTGGGT 59.806 40.000 13.59 0.00 41.58 4.51
177 178 5.568620 ATTGATCCCTATACTTGTGGGTC 57.431 43.478 0.00 0.00 41.58 4.46
178 179 4.002256 TGATCCCTATACTTGTGGGTCA 57.998 45.455 0.00 0.00 41.58 4.02
179 180 4.566837 TGATCCCTATACTTGTGGGTCAT 58.433 43.478 0.00 0.00 41.58 3.06
180 181 4.593206 TGATCCCTATACTTGTGGGTCATC 59.407 45.833 0.00 0.00 41.58 2.92
181 182 4.002256 TCCCTATACTTGTGGGTCATCA 57.998 45.455 0.00 0.00 41.58 3.07
182 183 4.566837 TCCCTATACTTGTGGGTCATCAT 58.433 43.478 0.00 0.00 41.58 2.45
183 184 4.975147 TCCCTATACTTGTGGGTCATCATT 59.025 41.667 0.00 0.00 41.58 2.57
184 185 5.071788 TCCCTATACTTGTGGGTCATCATTC 59.928 44.000 0.00 0.00 41.58 2.67
185 186 5.072329 CCCTATACTTGTGGGTCATCATTCT 59.928 44.000 0.00 0.00 36.32 2.40
186 187 6.226787 CCTATACTTGTGGGTCATCATTCTC 58.773 44.000 0.00 0.00 0.00 2.87
208 209 0.824109 GCAACTTTAGGCCCCATTCC 59.176 55.000 0.00 0.00 0.00 3.01
217 218 0.748367 GGCCCCATTCCGAAGTTCTC 60.748 60.000 0.56 0.00 0.00 2.87
255 268 3.437795 CCAGCCAAGCCAGCTTCG 61.438 66.667 0.90 0.00 38.95 3.79
301 317 1.803519 GACTGCTTCTGCTCCGTCG 60.804 63.158 0.00 0.00 40.48 5.12
331 347 1.642513 TAGAGGAGAGGCACGGGCTA 61.643 60.000 10.74 0.00 38.98 3.93
338 354 2.184579 GGCACGGGCTAGTCTGAC 59.815 66.667 10.74 0.00 40.87 3.51
344 360 1.901085 GGGCTAGTCTGACACTGGG 59.099 63.158 10.88 0.00 36.43 4.45
346 362 0.905337 GGCTAGTCTGACACTGGGGT 60.905 60.000 10.88 0.00 36.43 4.95
360 376 2.657237 GGGTCGTGAGGTCACTGG 59.343 66.667 8.44 0.00 44.34 4.00
366 382 0.532862 CGTGAGGTCACTGGTTTGCT 60.533 55.000 8.44 0.00 44.34 3.91
371 387 0.108585 GGTCACTGGTTTGCTCAGGA 59.891 55.000 0.00 0.00 36.62 3.86
376 392 1.202698 ACTGGTTTGCTCAGGAGTGTC 60.203 52.381 0.00 0.00 36.62 3.67
379 395 2.147150 GGTTTGCTCAGGAGTGTCTTC 58.853 52.381 0.00 0.00 0.00 2.87
386 402 4.774726 TGCTCAGGAGTGTCTTCTCTAATT 59.225 41.667 0.00 0.00 35.11 1.40
391 407 7.911651 TCAGGAGTGTCTTCTCTAATTGAAAT 58.088 34.615 0.00 0.00 35.11 2.17
422 438 4.154942 AGTCACTTTGGAATGGCATTCTT 58.845 39.130 32.48 14.15 39.24 2.52
467 483 0.797249 CGTCGTTTGGAGGAGCTACG 60.797 60.000 0.00 0.00 32.22 3.51
471 487 1.360820 GTTTGGAGGAGCTACGCTTC 58.639 55.000 0.00 0.00 39.88 3.86
474 490 2.278923 GAGGAGCTACGCTTCCGC 60.279 66.667 0.00 0.00 39.88 5.54
490 506 1.577328 CCGCTGCTCCACGAAATTGT 61.577 55.000 0.00 0.00 0.00 2.71
491 507 0.453282 CGCTGCTCCACGAAATTGTG 60.453 55.000 0.00 0.00 39.60 3.33
505 521 1.847798 ATTGTGTTGCGGGAGGGCTA 61.848 55.000 0.00 0.00 0.00 3.93
506 522 1.847798 TTGTGTTGCGGGAGGGCTAT 61.848 55.000 0.00 0.00 0.00 2.97
513 529 2.143419 CGGGAGGGCTATGCTTCCT 61.143 63.158 11.22 0.00 34.50 3.36
516 532 1.774856 GGGAGGGCTATGCTTCCTAAA 59.225 52.381 11.22 0.00 34.50 1.85
531 547 1.696832 CTAAAGCTGGCTTCGCGGAC 61.697 60.000 6.13 0.00 34.84 4.79
548 564 1.598701 GACCTGGGCTGTTTGGCATC 61.599 60.000 0.00 0.00 43.83 3.91
553 569 2.042831 GGCTGTTTGGCATCGCTCT 61.043 57.895 0.00 0.00 41.37 4.09
554 570 1.589716 GGCTGTTTGGCATCGCTCTT 61.590 55.000 0.00 0.00 41.37 2.85
555 571 0.455633 GCTGTTTGGCATCGCTCTTG 60.456 55.000 0.00 0.00 0.00 3.02
556 572 0.877071 CTGTTTGGCATCGCTCTTGT 59.123 50.000 0.00 0.00 0.00 3.16
557 573 1.267806 CTGTTTGGCATCGCTCTTGTT 59.732 47.619 0.00 0.00 0.00 2.83
558 574 1.001487 TGTTTGGCATCGCTCTTGTTG 60.001 47.619 0.00 0.00 0.00 3.33
559 575 1.266718 GTTTGGCATCGCTCTTGTTGA 59.733 47.619 0.00 0.00 0.00 3.18
560 576 0.874390 TTGGCATCGCTCTTGTTGAC 59.126 50.000 0.00 0.00 0.00 3.18
562 578 1.291877 GGCATCGCTCTTGTTGACGT 61.292 55.000 0.00 0.00 0.00 4.34
563 579 1.346365 GCATCGCTCTTGTTGACGTA 58.654 50.000 0.00 0.00 0.00 3.57
564 580 1.927174 GCATCGCTCTTGTTGACGTAT 59.073 47.619 0.00 0.00 0.00 3.06
565 581 3.113322 GCATCGCTCTTGTTGACGTATA 58.887 45.455 0.00 0.00 0.00 1.47
566 582 3.550275 GCATCGCTCTTGTTGACGTATAA 59.450 43.478 0.00 0.00 0.00 0.98
567 583 4.032445 GCATCGCTCTTGTTGACGTATAAA 59.968 41.667 0.00 0.00 0.00 1.40
570 586 5.165676 TCGCTCTTGTTGACGTATAAATGT 58.834 37.500 0.00 0.00 0.00 2.71
572 588 6.976349 TCGCTCTTGTTGACGTATAAATGTAT 59.024 34.615 0.00 0.00 0.00 2.29
573 589 7.490079 TCGCTCTTGTTGACGTATAAATGTATT 59.510 33.333 0.00 0.00 0.00 1.89
576 592 9.901724 CTCTTGTTGACGTATAAATGTATTGTC 57.098 33.333 0.00 2.48 0.00 3.18
577 593 9.647797 TCTTGTTGACGTATAAATGTATTGTCT 57.352 29.630 0.00 0.00 30.71 3.41
598 614 8.693120 TGTCTAGTCTATTTTATCAGATCGGT 57.307 34.615 0.00 0.00 0.00 4.69
599 615 9.132923 TGTCTAGTCTATTTTATCAGATCGGTT 57.867 33.333 0.00 0.00 0.00 4.44
600 616 9.968870 GTCTAGTCTATTTTATCAGATCGGTTT 57.031 33.333 0.00 0.00 0.00 3.27
621 637 4.701956 TTTTAGTTGCATTGGCTAGAGC 57.298 40.909 0.00 0.00 41.91 4.09
622 638 3.348647 TTAGTTGCATTGGCTAGAGCA 57.651 42.857 3.54 0.00 44.36 4.26
623 639 2.431954 AGTTGCATTGGCTAGAGCAT 57.568 45.000 3.54 0.00 44.36 3.79
624 640 2.022195 AGTTGCATTGGCTAGAGCATG 58.978 47.619 3.54 0.90 44.36 4.06
625 641 0.742505 TTGCATTGGCTAGAGCATGC 59.257 50.000 10.51 10.51 45.25 4.06
626 642 2.411535 GCATTGGCTAGAGCATGCA 58.588 52.632 21.98 0.00 44.74 3.96
627 643 0.959553 GCATTGGCTAGAGCATGCAT 59.040 50.000 21.98 10.70 44.74 3.96
628 644 1.340248 GCATTGGCTAGAGCATGCATT 59.660 47.619 21.98 9.90 44.74 3.56
629 645 2.223971 GCATTGGCTAGAGCATGCATTT 60.224 45.455 21.98 7.16 44.74 2.32
630 646 3.639538 CATTGGCTAGAGCATGCATTTC 58.360 45.455 21.98 9.02 44.36 2.17
631 647 2.723322 TGGCTAGAGCATGCATTTCT 57.277 45.000 21.98 16.34 44.36 2.52
632 648 3.843893 TGGCTAGAGCATGCATTTCTA 57.156 42.857 21.98 16.60 44.36 2.10
633 649 3.470709 TGGCTAGAGCATGCATTTCTAC 58.529 45.455 21.98 11.95 44.36 2.59
634 650 3.118298 TGGCTAGAGCATGCATTTCTACA 60.118 43.478 21.98 10.42 44.36 2.74
635 651 3.497640 GGCTAGAGCATGCATTTCTACAG 59.502 47.826 21.98 10.20 44.36 2.74
636 652 3.059051 GCTAGAGCATGCATTTCTACAGC 60.059 47.826 21.98 15.83 41.59 4.40
637 653 3.278668 AGAGCATGCATTTCTACAGCT 57.721 42.857 21.98 6.88 0.00 4.24
638 654 3.204526 AGAGCATGCATTTCTACAGCTC 58.795 45.455 21.98 19.78 45.32 4.09
639 655 3.204526 GAGCATGCATTTCTACAGCTCT 58.795 45.455 21.98 0.00 42.60 4.09
640 656 4.375272 GAGCATGCATTTCTACAGCTCTA 58.625 43.478 21.98 0.00 42.60 2.43
641 657 4.125703 AGCATGCATTTCTACAGCTCTAC 58.874 43.478 21.98 0.00 0.00 2.59
642 658 3.060003 GCATGCATTTCTACAGCTCTACG 60.060 47.826 14.21 0.00 0.00 3.51
643 659 2.540515 TGCATTTCTACAGCTCTACGC 58.459 47.619 0.00 0.00 39.57 4.42
644 660 2.094234 TGCATTTCTACAGCTCTACGCA 60.094 45.455 0.00 0.00 42.61 5.24
645 661 3.126831 GCATTTCTACAGCTCTACGCAT 58.873 45.455 0.00 0.00 42.61 4.73
646 662 3.060003 GCATTTCTACAGCTCTACGCATG 60.060 47.826 0.00 0.00 42.61 4.06
647 663 2.871182 TTCTACAGCTCTACGCATGG 57.129 50.000 0.00 0.00 42.61 3.66
648 664 2.052782 TCTACAGCTCTACGCATGGA 57.947 50.000 0.00 0.00 42.61 3.41
649 665 1.950216 TCTACAGCTCTACGCATGGAG 59.050 52.381 0.00 0.00 42.61 3.86
658 674 0.395724 TACGCATGGAGCTGGAGAGA 60.396 55.000 0.00 0.00 42.61 3.10
660 676 0.107993 CGCATGGAGCTGGAGAGAAA 60.108 55.000 0.00 0.00 42.61 2.52
662 678 2.016096 GCATGGAGCTGGAGAGAAACC 61.016 57.143 0.00 0.00 41.15 3.27
665 681 0.174617 GGAGCTGGAGAGAAACCGAG 59.825 60.000 0.00 0.00 0.00 4.63
667 683 1.188219 AGCTGGAGAGAAACCGAGCA 61.188 55.000 0.00 0.00 35.58 4.26
682 698 1.406069 CGAGCAGGCCATAAGTTGACT 60.406 52.381 5.01 0.00 0.00 3.41
703 719 0.466372 GAGGATGGCAAGTTAGGGGC 60.466 60.000 0.00 0.00 0.00 5.80
707 723 0.972471 ATGGCAAGTTAGGGGCAAGC 60.972 55.000 0.00 0.00 43.13 4.01
709 725 1.598701 GGCAAGTTAGGGGCAAGCTG 61.599 60.000 0.00 0.00 0.00 4.24
733 749 5.447818 GCTGAAGCACGAAAGTTATTATGCT 60.448 40.000 0.00 0.00 46.40 3.79
744 764 9.081997 CGAAAGTTATTATGCTTGGCAATTAAA 57.918 29.630 0.00 0.00 43.62 1.52
759 779 5.048083 GGCAATTAAAGTTGTCATCCTCACA 60.048 40.000 0.00 0.00 33.97 3.58
763 783 8.464404 CAATTAAAGTTGTCATCCTCACATCAT 58.536 33.333 0.00 0.00 0.00 2.45
764 784 7.615582 TTAAAGTTGTCATCCTCACATCATC 57.384 36.000 0.00 0.00 0.00 2.92
773 793 2.743664 TCCTCACATCATCAAACTTGCG 59.256 45.455 0.00 0.00 0.00 4.85
776 797 3.402110 TCACATCATCAAACTTGCGTCT 58.598 40.909 0.00 0.00 0.00 4.18
792 813 0.108756 GTCTAAAGCCGTTCGGAGCT 60.109 55.000 15.69 2.86 42.40 4.09
793 814 0.108804 TCTAAAGCCGTTCGGAGCTG 60.109 55.000 15.69 1.13 39.87 4.24
798 819 2.436646 CCGTTCGGAGCTGGCATT 60.437 61.111 5.19 0.00 0.00 3.56
801 997 1.796796 GTTCGGAGCTGGCATTGTC 59.203 57.895 0.00 0.00 0.00 3.18
802 998 0.674895 GTTCGGAGCTGGCATTGTCT 60.675 55.000 0.00 0.00 0.00 3.41
805 1001 1.219124 GGAGCTGGCATTGTCTCGA 59.781 57.895 0.00 0.00 0.00 4.04
811 1007 1.126846 CTGGCATTGTCTCGAACGTTC 59.873 52.381 18.47 18.47 0.00 3.95
828 1024 6.971337 AACGTTCGATACTTATCAGATTCG 57.029 37.500 0.00 0.00 32.98 3.34
829 1025 6.057627 ACGTTCGATACTTATCAGATTCGT 57.942 37.500 0.00 6.56 32.94 3.85
830 1026 7.182361 ACGTTCGATACTTATCAGATTCGTA 57.818 36.000 0.00 0.00 32.59 3.43
831 1027 7.633621 ACGTTCGATACTTATCAGATTCGTAA 58.366 34.615 0.00 0.00 32.59 3.18
864 1064 2.202878 CGTGTATGGAGTGGCCCG 60.203 66.667 0.00 0.00 34.97 6.13
865 1065 2.717044 CGTGTATGGAGTGGCCCGA 61.717 63.158 0.00 0.00 34.97 5.14
875 1075 2.359850 TGGCCCGACATTGCAGAC 60.360 61.111 0.00 0.00 0.00 3.51
878 1078 2.740714 GCCCGACATTGCAGACGAC 61.741 63.158 0.00 0.00 0.00 4.34
890 1090 1.603678 GCAGACGACGACTGGGTAAAA 60.604 52.381 24.66 0.00 36.09 1.52
894 1094 3.992427 AGACGACGACTGGGTAAAATTTC 59.008 43.478 0.00 0.00 0.00 2.17
915 1115 6.922980 TTCGTCTTGTTATAACTCTTGACG 57.077 37.500 26.89 26.89 44.64 4.35
916 1116 6.005583 TCGTCTTGTTATAACTCTTGACGT 57.994 37.500 28.78 0.00 43.98 4.34
918 1118 5.628193 CGTCTTGTTATAACTCTTGACGTGT 59.372 40.000 25.79 0.00 40.40 4.49
919 1119 6.183359 CGTCTTGTTATAACTCTTGACGTGTC 60.183 42.308 25.79 0.00 40.40 3.67
920 1120 5.854866 TCTTGTTATAACTCTTGACGTGTCG 59.145 40.000 16.33 0.00 0.00 4.35
921 1121 5.361135 TGTTATAACTCTTGACGTGTCGA 57.639 39.130 16.33 0.00 0.00 4.20
954 1154 2.050351 CGACGACGCTGTTGGAGT 60.050 61.111 0.00 0.00 0.00 3.85
955 1155 2.365068 CGACGACGCTGTTGGAGTG 61.365 63.158 0.00 0.00 38.26 3.51
957 1157 0.874607 GACGACGCTGTTGGAGTGTT 60.875 55.000 0.00 0.00 45.82 3.32
958 1158 0.461339 ACGACGCTGTTGGAGTGTTT 60.461 50.000 0.00 0.00 45.82 2.83
959 1159 0.042188 CGACGCTGTTGGAGTGTTTG 60.042 55.000 0.00 0.00 45.82 2.93
960 1160 1.014352 GACGCTGTTGGAGTGTTTGT 58.986 50.000 0.00 0.00 45.82 2.83
971 1171 2.515757 TGTTTGTCGCTGCTGCCA 60.516 55.556 10.24 0.00 35.36 4.92
1168 1383 4.245660 CTGTTGCTCGGTTCTGAATCTAA 58.754 43.478 0.00 0.00 0.00 2.10
1169 1384 4.245660 TGTTGCTCGGTTCTGAATCTAAG 58.754 43.478 0.00 0.00 0.00 2.18
1170 1385 2.893637 TGCTCGGTTCTGAATCTAAGC 58.106 47.619 14.42 14.42 0.00 3.09
1171 1386 1.855360 GCTCGGTTCTGAATCTAAGCG 59.145 52.381 12.01 12.01 45.27 4.68
1437 1664 1.134699 AGACACTGATACACATGCCCG 60.135 52.381 0.00 0.00 0.00 6.13
1442 1669 3.002656 CACTGATACACATGCCCGATTTC 59.997 47.826 0.00 0.00 0.00 2.17
1458 1685 4.274459 CCGATTTCCCATCTGACAGAAATC 59.726 45.833 9.70 19.16 45.68 2.17
1502 1751 5.467035 ACTAATCACCAACCCAAATGTTG 57.533 39.130 0.00 0.00 44.12 3.33
1541 1790 5.810587 TCAGCTTATCGTCCACTAATTTCAC 59.189 40.000 0.00 0.00 0.00 3.18
1582 1834 6.183360 ACCATGAAATGTTTGCTTGACTGTAA 60.183 34.615 0.00 0.00 44.81 2.41
1662 1914 5.957842 TGAAAGTCAATGTAATCACACCC 57.042 39.130 0.00 0.00 37.54 4.61
1668 1920 3.091545 CAATGTAATCACACCCTGGCTT 58.908 45.455 0.00 0.00 37.54 4.35
1831 2083 3.765026 CTCGTCAGAGTAAGCCTTCTTC 58.235 50.000 0.00 0.00 39.60 2.87
1833 2085 2.494073 CGTCAGAGTAAGCCTTCTTCCT 59.506 50.000 0.00 0.00 33.85 3.36
1880 2132 1.368641 TCACGGAAATCCTGAATGCG 58.631 50.000 0.00 0.00 0.00 4.73
1953 2206 3.087031 CAAGCACAAGATCAGGGTGAAT 58.913 45.455 13.53 1.35 34.52 2.57
2160 2413 2.183300 GACGGCGCACAGTCCATA 59.817 61.111 10.83 0.00 0.00 2.74
2200 2477 2.504175 TCCTTCCTGTAGGTATGGTTGC 59.496 50.000 0.00 0.00 36.63 4.17
2253 2530 6.037610 GGATGACTCCTGATATGTTGTTTGTC 59.962 42.308 0.00 0.00 38.65 3.18
2292 2618 7.380602 GTCTCTGTGAATGCAATAATTAATGGC 59.619 37.037 2.79 1.73 34.77 4.40
2313 2639 7.523293 TGGCAGAGTAAAGATCAAATTTGAA 57.477 32.000 23.91 5.21 41.13 2.69
2316 2642 8.919661 GGCAGAGTAAAGATCAAATTTGAAAAG 58.080 33.333 23.91 7.15 41.13 2.27
2339 2665 2.012673 CTACCCAGAAGCAACATGAGC 58.987 52.381 0.00 2.85 0.00 4.26
2446 2781 6.014242 GGACTCATACAGGATCATAACCATCA 60.014 42.308 0.00 0.00 0.00 3.07
2447 2782 7.310921 GGACTCATACAGGATCATAACCATCAT 60.311 40.741 0.00 0.00 0.00 2.45
2448 2783 7.619050 ACTCATACAGGATCATAACCATCATC 58.381 38.462 0.00 0.00 0.00 2.92
2455 2790 1.410882 TCATAACCATCATCGCCGACA 59.589 47.619 0.00 0.00 0.00 4.35
2490 2825 7.168219 ACTCTTGAAACTGATTGTATGCCTTA 58.832 34.615 0.00 0.00 0.00 2.69
2508 2843 5.128827 TGCCTTAATAGTTCTGGAACGAGAT 59.871 40.000 7.67 1.60 45.50 2.75
2530 2865 2.560542 ACGCAAAGCCCATCACATAAAA 59.439 40.909 0.00 0.00 0.00 1.52
2566 2902 3.325425 TCAGGTGAAAGAACGGGTAATGA 59.675 43.478 0.00 0.00 0.00 2.57
2754 3100 3.570638 CTCGATGCCCTGCAAGCG 61.571 66.667 4.11 7.95 43.62 4.68
3084 3454 1.765904 GGACCTTCCTCCCTCAAGATC 59.234 57.143 0.00 0.00 32.53 2.75
3150 3520 1.962807 TGCAATGGAAGTTGGAACCAG 59.037 47.619 0.00 0.00 37.12 4.00
3152 3522 3.648339 CAATGGAAGTTGGAACCAGTG 57.352 47.619 0.00 0.00 41.83 3.66
3176 3546 8.665685 GTGGGTCAGTACTCAATTATGTAAAAG 58.334 37.037 0.00 0.00 38.01 2.27
3177 3547 8.380099 TGGGTCAGTACTCAATTATGTAAAAGT 58.620 33.333 0.00 0.00 31.40 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.578020 TCACAACGAGTAACAAGTAACAAG 57.422 37.500 0.00 0.00 0.00 3.16
2 3 6.964741 TTCACAACGAGTAACAAGTAACAA 57.035 33.333 0.00 0.00 0.00 2.83
3 4 7.542534 AATTCACAACGAGTAACAAGTAACA 57.457 32.000 0.00 0.00 0.00 2.41
5 6 7.927629 AGGTAATTCACAACGAGTAACAAGTAA 59.072 33.333 0.00 0.00 0.00 2.24
6 7 7.436118 AGGTAATTCACAACGAGTAACAAGTA 58.564 34.615 0.00 0.00 0.00 2.24
8 9 6.780706 AGGTAATTCACAACGAGTAACAAG 57.219 37.500 0.00 0.00 0.00 3.16
9 10 6.512091 GCAAGGTAATTCACAACGAGTAACAA 60.512 38.462 0.00 0.00 0.00 2.83
10 11 5.049954 GCAAGGTAATTCACAACGAGTAACA 60.050 40.000 0.00 0.00 0.00 2.41
11 12 5.379827 GCAAGGTAATTCACAACGAGTAAC 58.620 41.667 0.00 0.00 0.00 2.50
12 13 4.453136 GGCAAGGTAATTCACAACGAGTAA 59.547 41.667 0.00 0.00 0.00 2.24
13 14 3.998341 GGCAAGGTAATTCACAACGAGTA 59.002 43.478 0.00 0.00 0.00 2.59
14 15 2.812011 GGCAAGGTAATTCACAACGAGT 59.188 45.455 0.00 0.00 0.00 4.18
15 16 2.811431 TGGCAAGGTAATTCACAACGAG 59.189 45.455 0.00 0.00 0.00 4.18
16 17 2.550606 GTGGCAAGGTAATTCACAACGA 59.449 45.455 0.00 0.00 0.00 3.85
17 18 2.351350 GGTGGCAAGGTAATTCACAACG 60.351 50.000 0.00 0.00 0.00 4.10
18 19 2.625790 TGGTGGCAAGGTAATTCACAAC 59.374 45.455 0.00 0.00 0.00 3.32
19 20 2.950781 TGGTGGCAAGGTAATTCACAA 58.049 42.857 0.00 0.00 0.00 3.33
20 21 2.666272 TGGTGGCAAGGTAATTCACA 57.334 45.000 0.00 0.00 0.00 3.58
21 22 3.320826 AGTTTGGTGGCAAGGTAATTCAC 59.679 43.478 0.00 0.00 0.00 3.18
22 23 3.571590 AGTTTGGTGGCAAGGTAATTCA 58.428 40.909 0.00 0.00 0.00 2.57
23 24 5.163550 GGATAGTTTGGTGGCAAGGTAATTC 60.164 44.000 0.00 0.00 0.00 2.17
24 25 4.709886 GGATAGTTTGGTGGCAAGGTAATT 59.290 41.667 0.00 0.00 0.00 1.40
25 26 4.017499 AGGATAGTTTGGTGGCAAGGTAAT 60.017 41.667 0.00 0.00 0.00 1.89
26 27 3.332485 AGGATAGTTTGGTGGCAAGGTAA 59.668 43.478 0.00 0.00 0.00 2.85
27 28 2.916934 AGGATAGTTTGGTGGCAAGGTA 59.083 45.455 0.00 0.00 0.00 3.08
28 29 1.710809 AGGATAGTTTGGTGGCAAGGT 59.289 47.619 0.00 0.00 0.00 3.50
29 30 2.094675 CAGGATAGTTTGGTGGCAAGG 58.905 52.381 0.00 0.00 0.00 3.61
30 31 2.795329 ACAGGATAGTTTGGTGGCAAG 58.205 47.619 0.00 0.00 0.00 4.01
31 32 2.969821 ACAGGATAGTTTGGTGGCAA 57.030 45.000 0.00 0.00 0.00 4.52
32 33 2.969821 AACAGGATAGTTTGGTGGCA 57.030 45.000 0.00 0.00 0.00 4.92
33 34 3.014623 GGTAACAGGATAGTTTGGTGGC 58.985 50.000 0.00 0.00 33.07 5.01
34 35 3.055675 TCGGTAACAGGATAGTTTGGTGG 60.056 47.826 0.00 0.00 33.07 4.61
35 36 4.196626 TCGGTAACAGGATAGTTTGGTG 57.803 45.455 0.00 0.00 33.07 4.17
36 37 6.742559 ATATCGGTAACAGGATAGTTTGGT 57.257 37.500 0.00 0.00 33.07 3.67
37 38 8.446599 AAAATATCGGTAACAGGATAGTTTGG 57.553 34.615 5.89 0.00 40.09 3.28
38 39 9.104965 TGAAAATATCGGTAACAGGATAGTTTG 57.895 33.333 10.11 0.00 41.03 2.93
39 40 9.326413 CTGAAAATATCGGTAACAGGATAGTTT 57.674 33.333 6.27 6.27 42.59 2.66
40 41 8.483758 ACTGAAAATATCGGTAACAGGATAGTT 58.516 33.333 0.00 0.00 46.04 2.24
41 42 7.926555 CACTGAAAATATCGGTAACAGGATAGT 59.073 37.037 0.00 0.00 46.15 2.12
42 43 7.095607 GCACTGAAAATATCGGTAACAGGATAG 60.096 40.741 0.00 0.00 46.15 2.08
43 44 6.704493 GCACTGAAAATATCGGTAACAGGATA 59.296 38.462 0.00 0.00 46.15 2.59
44 45 5.527582 GCACTGAAAATATCGGTAACAGGAT 59.472 40.000 0.00 0.00 46.15 3.24
45 46 4.873827 GCACTGAAAATATCGGTAACAGGA 59.126 41.667 0.00 0.00 46.15 3.86
46 47 4.876107 AGCACTGAAAATATCGGTAACAGG 59.124 41.667 0.00 0.00 46.15 4.00
47 48 6.250819 CAAGCACTGAAAATATCGGTAACAG 58.749 40.000 0.00 0.00 46.15 3.16
48 49 5.391523 GCAAGCACTGAAAATATCGGTAACA 60.392 40.000 0.00 0.00 46.15 2.41
49 50 5.028375 GCAAGCACTGAAAATATCGGTAAC 58.972 41.667 0.00 0.00 46.15 2.50
50 51 4.697828 TGCAAGCACTGAAAATATCGGTAA 59.302 37.500 0.00 0.00 46.15 2.85
51 52 4.257731 TGCAAGCACTGAAAATATCGGTA 58.742 39.130 0.00 0.00 46.15 4.02
53 54 3.374988 TCTGCAAGCACTGAAAATATCGG 59.625 43.478 0.00 0.00 40.53 4.18
54 55 4.330894 TCTCTGCAAGCACTGAAAATATCG 59.669 41.667 0.00 0.00 0.00 2.92
55 56 5.808042 TCTCTGCAAGCACTGAAAATATC 57.192 39.130 0.00 0.00 0.00 1.63
56 57 6.770746 ATTCTCTGCAAGCACTGAAAATAT 57.229 33.333 8.38 0.00 0.00 1.28
57 58 6.094048 GGTATTCTCTGCAAGCACTGAAAATA 59.906 38.462 8.38 0.00 0.00 1.40
58 59 5.105997 GGTATTCTCTGCAAGCACTGAAAAT 60.106 40.000 8.38 0.46 0.00 1.82
59 60 4.216257 GGTATTCTCTGCAAGCACTGAAAA 59.784 41.667 8.38 0.00 0.00 2.29
60 61 3.753272 GGTATTCTCTGCAAGCACTGAAA 59.247 43.478 8.38 0.00 0.00 2.69
61 62 3.008375 AGGTATTCTCTGCAAGCACTGAA 59.992 43.478 7.21 7.21 0.00 3.02
62 63 2.568956 AGGTATTCTCTGCAAGCACTGA 59.431 45.455 0.00 0.00 0.00 3.41
63 64 2.983229 AGGTATTCTCTGCAAGCACTG 58.017 47.619 0.00 0.00 0.00 3.66
64 65 3.710209 AAGGTATTCTCTGCAAGCACT 57.290 42.857 0.00 0.00 0.00 4.40
65 66 4.331168 CAGTAAGGTATTCTCTGCAAGCAC 59.669 45.833 0.00 0.00 0.00 4.40
66 67 4.222810 TCAGTAAGGTATTCTCTGCAAGCA 59.777 41.667 0.00 0.00 0.00 3.91
67 68 4.759782 TCAGTAAGGTATTCTCTGCAAGC 58.240 43.478 0.00 0.00 0.00 4.01
68 69 7.361286 GGTTTTCAGTAAGGTATTCTCTGCAAG 60.361 40.741 0.00 0.00 0.00 4.01
69 70 6.430000 GGTTTTCAGTAAGGTATTCTCTGCAA 59.570 38.462 0.00 0.00 0.00 4.08
70 71 5.938125 GGTTTTCAGTAAGGTATTCTCTGCA 59.062 40.000 0.00 0.00 0.00 4.41
71 72 5.063564 CGGTTTTCAGTAAGGTATTCTCTGC 59.936 44.000 0.00 0.00 0.00 4.26
72 73 5.063564 GCGGTTTTCAGTAAGGTATTCTCTG 59.936 44.000 0.00 0.00 0.00 3.35
73 74 5.046520 AGCGGTTTTCAGTAAGGTATTCTCT 60.047 40.000 0.00 0.00 0.00 3.10
74 75 5.176592 AGCGGTTTTCAGTAAGGTATTCTC 58.823 41.667 0.00 0.00 0.00 2.87
75 76 5.161943 AGCGGTTTTCAGTAAGGTATTCT 57.838 39.130 0.00 0.00 0.00 2.40
76 77 6.104665 ACTAGCGGTTTTCAGTAAGGTATTC 58.895 40.000 0.00 0.00 0.00 1.75
77 78 6.046290 ACTAGCGGTTTTCAGTAAGGTATT 57.954 37.500 0.00 0.00 0.00 1.89
78 79 5.186409 TGACTAGCGGTTTTCAGTAAGGTAT 59.814 40.000 0.00 0.00 0.00 2.73
79 80 4.523943 TGACTAGCGGTTTTCAGTAAGGTA 59.476 41.667 0.00 0.00 0.00 3.08
80 81 3.322828 TGACTAGCGGTTTTCAGTAAGGT 59.677 43.478 0.00 0.00 0.00 3.50
81 82 3.921677 TGACTAGCGGTTTTCAGTAAGG 58.078 45.455 0.00 0.00 0.00 2.69
82 83 6.402226 GGAAATGACTAGCGGTTTTCAGTAAG 60.402 42.308 10.01 0.00 30.43 2.34
83 84 5.410439 GGAAATGACTAGCGGTTTTCAGTAA 59.590 40.000 10.01 0.00 30.43 2.24
84 85 4.933400 GGAAATGACTAGCGGTTTTCAGTA 59.067 41.667 10.01 0.00 30.43 2.74
85 86 3.751698 GGAAATGACTAGCGGTTTTCAGT 59.248 43.478 10.01 0.00 30.43 3.41
86 87 4.003648 AGGAAATGACTAGCGGTTTTCAG 58.996 43.478 10.01 0.00 30.43 3.02
87 88 4.015872 AGGAAATGACTAGCGGTTTTCA 57.984 40.909 10.01 5.84 30.43 2.69
88 89 4.695928 AGAAGGAAATGACTAGCGGTTTTC 59.304 41.667 0.00 0.00 0.00 2.29
89 90 4.652822 AGAAGGAAATGACTAGCGGTTTT 58.347 39.130 0.00 0.00 0.00 2.43
90 91 4.287766 AGAAGGAAATGACTAGCGGTTT 57.712 40.909 0.00 0.00 0.00 3.27
91 92 3.983044 AGAAGGAAATGACTAGCGGTT 57.017 42.857 0.00 0.00 0.00 4.44
92 93 4.024670 AGTAGAAGGAAATGACTAGCGGT 58.975 43.478 0.00 0.00 0.00 5.68
93 94 4.500035 GGAGTAGAAGGAAATGACTAGCGG 60.500 50.000 0.00 0.00 0.00 5.52
94 95 4.339814 AGGAGTAGAAGGAAATGACTAGCG 59.660 45.833 0.00 0.00 0.00 4.26
95 96 5.506649 CGAGGAGTAGAAGGAAATGACTAGC 60.507 48.000 0.00 0.00 0.00 3.42
96 97 5.591067 ACGAGGAGTAGAAGGAAATGACTAG 59.409 44.000 0.00 0.00 0.00 2.57
97 98 5.507637 ACGAGGAGTAGAAGGAAATGACTA 58.492 41.667 0.00 0.00 0.00 2.59
98 99 4.345854 ACGAGGAGTAGAAGGAAATGACT 58.654 43.478 0.00 0.00 0.00 3.41
99 100 4.722361 ACGAGGAGTAGAAGGAAATGAC 57.278 45.455 0.00 0.00 0.00 3.06
100 101 4.081642 CCAACGAGGAGTAGAAGGAAATGA 60.082 45.833 0.00 0.00 41.22 2.57
101 102 4.184629 CCAACGAGGAGTAGAAGGAAATG 58.815 47.826 0.00 0.00 41.22 2.32
102 103 3.197983 CCCAACGAGGAGTAGAAGGAAAT 59.802 47.826 0.00 0.00 41.22 2.17
103 104 2.565834 CCCAACGAGGAGTAGAAGGAAA 59.434 50.000 0.00 0.00 41.22 3.13
104 105 2.176889 CCCAACGAGGAGTAGAAGGAA 58.823 52.381 0.00 0.00 41.22 3.36
105 106 1.076677 ACCCAACGAGGAGTAGAAGGA 59.923 52.381 0.00 0.00 41.22 3.36
106 107 1.558233 ACCCAACGAGGAGTAGAAGG 58.442 55.000 0.00 0.00 41.22 3.46
107 108 2.415625 CGAACCCAACGAGGAGTAGAAG 60.416 54.545 0.00 0.00 41.22 2.85
108 109 1.542915 CGAACCCAACGAGGAGTAGAA 59.457 52.381 0.00 0.00 41.22 2.10
109 110 1.171308 CGAACCCAACGAGGAGTAGA 58.829 55.000 0.00 0.00 41.22 2.59
110 111 1.135460 GTCGAACCCAACGAGGAGTAG 60.135 57.143 0.00 0.00 41.22 2.57
111 112 0.883833 GTCGAACCCAACGAGGAGTA 59.116 55.000 0.00 0.00 41.22 2.59
112 113 1.111116 TGTCGAACCCAACGAGGAGT 61.111 55.000 0.00 0.00 41.22 3.85
113 114 0.666577 GTGTCGAACCCAACGAGGAG 60.667 60.000 0.00 0.00 41.22 3.69
114 115 1.111116 AGTGTCGAACCCAACGAGGA 61.111 55.000 0.00 0.00 41.22 3.71
115 116 0.666577 GAGTGTCGAACCCAACGAGG 60.667 60.000 0.00 0.00 40.37 4.63
116 117 0.314302 AGAGTGTCGAACCCAACGAG 59.686 55.000 0.00 0.00 40.37 4.18
117 118 0.748450 AAGAGTGTCGAACCCAACGA 59.252 50.000 0.00 0.00 37.43 3.85
118 119 2.056577 GTAAGAGTGTCGAACCCAACG 58.943 52.381 0.00 0.00 0.00 4.10
119 120 3.382048 AGTAAGAGTGTCGAACCCAAC 57.618 47.619 0.00 0.00 0.00 3.77
120 121 5.620654 CGATAAGTAAGAGTGTCGAACCCAA 60.621 44.000 0.00 0.00 0.00 4.12
121 122 4.142534 CGATAAGTAAGAGTGTCGAACCCA 60.143 45.833 0.00 0.00 0.00 4.51
122 123 4.095483 TCGATAAGTAAGAGTGTCGAACCC 59.905 45.833 0.00 0.00 35.48 4.11
123 124 5.227238 TCGATAAGTAAGAGTGTCGAACC 57.773 43.478 0.00 0.00 35.48 3.62
124 125 6.250951 CCTTTCGATAAGTAAGAGTGTCGAAC 59.749 42.308 7.42 0.00 44.53 3.95
125 126 6.320171 CCTTTCGATAAGTAAGAGTGTCGAA 58.680 40.000 4.17 4.17 43.60 3.71
126 127 5.675575 GCCTTTCGATAAGTAAGAGTGTCGA 60.676 44.000 0.00 0.00 36.46 4.20
127 128 4.499758 GCCTTTCGATAAGTAAGAGTGTCG 59.500 45.833 0.00 0.00 29.89 4.35
128 129 5.652518 AGCCTTTCGATAAGTAAGAGTGTC 58.347 41.667 0.00 0.00 29.89 3.67
129 130 5.662674 AGCCTTTCGATAAGTAAGAGTGT 57.337 39.130 0.00 0.00 29.89 3.55
130 131 6.561614 TGTAGCCTTTCGATAAGTAAGAGTG 58.438 40.000 0.00 0.00 29.89 3.51
131 132 6.770746 TGTAGCCTTTCGATAAGTAAGAGT 57.229 37.500 0.00 0.00 29.89 3.24
132 133 8.543774 CAATTGTAGCCTTTCGATAAGTAAGAG 58.456 37.037 0.00 0.00 29.89 2.85
133 134 8.255206 TCAATTGTAGCCTTTCGATAAGTAAGA 58.745 33.333 5.13 0.00 29.89 2.10
134 135 8.420374 TCAATTGTAGCCTTTCGATAAGTAAG 57.580 34.615 5.13 0.00 0.00 2.34
135 136 8.958119 ATCAATTGTAGCCTTTCGATAAGTAA 57.042 30.769 5.13 0.00 0.00 2.24
136 137 7.656137 GGATCAATTGTAGCCTTTCGATAAGTA 59.344 37.037 5.13 0.00 0.00 2.24
137 138 6.483640 GGATCAATTGTAGCCTTTCGATAAGT 59.516 38.462 5.13 0.00 0.00 2.24
138 139 6.073003 GGGATCAATTGTAGCCTTTCGATAAG 60.073 42.308 5.13 0.00 0.00 1.73
139 140 5.763204 GGGATCAATTGTAGCCTTTCGATAA 59.237 40.000 5.13 0.00 0.00 1.75
140 141 5.071788 AGGGATCAATTGTAGCCTTTCGATA 59.928 40.000 5.13 0.00 0.00 2.92
141 142 4.137543 GGGATCAATTGTAGCCTTTCGAT 58.862 43.478 5.13 0.00 0.00 3.59
142 143 3.199946 AGGGATCAATTGTAGCCTTTCGA 59.800 43.478 5.13 0.00 0.00 3.71
143 144 3.545703 AGGGATCAATTGTAGCCTTTCG 58.454 45.455 5.13 0.00 0.00 3.46
144 145 7.454225 AGTATAGGGATCAATTGTAGCCTTTC 58.546 38.462 5.13 0.00 0.00 2.62
145 146 7.394144 AGTATAGGGATCAATTGTAGCCTTT 57.606 36.000 5.13 1.39 0.00 3.11
146 147 7.147302 ACAAGTATAGGGATCAATTGTAGCCTT 60.147 37.037 5.13 3.96 0.00 4.35
147 148 6.330250 ACAAGTATAGGGATCAATTGTAGCCT 59.670 38.462 5.13 0.00 0.00 4.58
148 149 6.428159 CACAAGTATAGGGATCAATTGTAGCC 59.572 42.308 5.13 4.61 0.00 3.93
149 150 6.428159 CCACAAGTATAGGGATCAATTGTAGC 59.572 42.308 5.13 0.00 0.00 3.58
150 151 6.936900 CCCACAAGTATAGGGATCAATTGTAG 59.063 42.308 5.13 0.00 45.80 2.74
151 152 6.388689 ACCCACAAGTATAGGGATCAATTGTA 59.611 38.462 5.13 0.00 45.80 2.41
152 153 5.193728 ACCCACAAGTATAGGGATCAATTGT 59.806 40.000 5.13 0.00 45.80 2.71
153 154 5.694995 ACCCACAAGTATAGGGATCAATTG 58.305 41.667 3.32 0.00 45.80 2.32
154 155 5.431731 TGACCCACAAGTATAGGGATCAATT 59.568 40.000 3.32 0.00 45.80 2.32
155 156 4.975147 TGACCCACAAGTATAGGGATCAAT 59.025 41.667 3.32 0.00 45.80 2.57
156 157 4.367166 TGACCCACAAGTATAGGGATCAA 58.633 43.478 3.32 0.00 45.80 2.57
157 158 4.002256 TGACCCACAAGTATAGGGATCA 57.998 45.455 3.32 1.38 45.80 2.92
158 159 4.593206 TGATGACCCACAAGTATAGGGATC 59.407 45.833 3.32 0.00 45.80 3.36
159 160 4.566837 TGATGACCCACAAGTATAGGGAT 58.433 43.478 3.32 0.00 45.80 3.85
160 161 4.002256 TGATGACCCACAAGTATAGGGA 57.998 45.455 3.32 0.00 45.80 4.20
162 163 6.042552 AGAGAATGATGACCCACAAGTATAGG 59.957 42.308 0.00 0.00 0.00 2.57
163 164 6.927936 CAGAGAATGATGACCCACAAGTATAG 59.072 42.308 0.00 0.00 0.00 1.31
164 165 6.183361 CCAGAGAATGATGACCCACAAGTATA 60.183 42.308 0.00 0.00 0.00 1.47
165 166 5.397221 CCAGAGAATGATGACCCACAAGTAT 60.397 44.000 0.00 0.00 0.00 2.12
166 167 4.080919 CCAGAGAATGATGACCCACAAGTA 60.081 45.833 0.00 0.00 0.00 2.24
167 168 3.307975 CCAGAGAATGATGACCCACAAGT 60.308 47.826 0.00 0.00 0.00 3.16
168 169 3.276857 CCAGAGAATGATGACCCACAAG 58.723 50.000 0.00 0.00 0.00 3.16
169 170 2.618816 GCCAGAGAATGATGACCCACAA 60.619 50.000 0.00 0.00 0.00 3.33
170 171 1.065199 GCCAGAGAATGATGACCCACA 60.065 52.381 0.00 0.00 0.00 4.17
171 172 1.065199 TGCCAGAGAATGATGACCCAC 60.065 52.381 0.00 0.00 0.00 4.61
172 173 1.288188 TGCCAGAGAATGATGACCCA 58.712 50.000 0.00 0.00 0.00 4.51
173 174 2.019984 GTTGCCAGAGAATGATGACCC 58.980 52.381 0.00 0.00 0.00 4.46
174 175 2.996631 AGTTGCCAGAGAATGATGACC 58.003 47.619 0.00 0.00 0.00 4.02
175 176 5.065731 CCTAAAGTTGCCAGAGAATGATGAC 59.934 44.000 0.00 0.00 0.00 3.06
176 177 5.188434 CCTAAAGTTGCCAGAGAATGATGA 58.812 41.667 0.00 0.00 0.00 2.92
177 178 4.201990 GCCTAAAGTTGCCAGAGAATGATG 60.202 45.833 0.00 0.00 0.00 3.07
178 179 3.950395 GCCTAAAGTTGCCAGAGAATGAT 59.050 43.478 0.00 0.00 0.00 2.45
179 180 3.347216 GCCTAAAGTTGCCAGAGAATGA 58.653 45.455 0.00 0.00 0.00 2.57
180 181 3.772060 GCCTAAAGTTGCCAGAGAATG 57.228 47.619 0.00 0.00 0.00 2.67
204 205 2.355209 GGAAGCCAGAGAACTTCGGAAT 60.355 50.000 0.00 0.00 42.62 3.01
208 209 0.321671 TGGGAAGCCAGAGAACTTCG 59.678 55.000 0.00 0.00 42.62 3.79
217 218 2.278330 GGCCAGTTTGGGAAGCCAG 61.278 63.158 0.00 0.00 43.32 4.85
255 268 3.050275 GCTTCACCACTCCCGTGC 61.050 66.667 0.00 0.00 39.86 5.34
264 277 2.203084 TTGCCGAACGCTTCACCA 60.203 55.556 0.00 0.00 38.78 4.17
280 293 1.373497 CGGAGCAGAAGCAGTCGTT 60.373 57.895 0.00 0.00 45.49 3.85
281 294 2.259818 CGGAGCAGAAGCAGTCGT 59.740 61.111 0.00 0.00 45.49 4.34
283 296 1.803519 CGACGGAGCAGAAGCAGTC 60.804 63.158 0.00 0.00 45.49 3.51
284 297 2.259818 CGACGGAGCAGAAGCAGT 59.740 61.111 0.00 0.00 45.49 4.40
286 299 4.742201 GCCGACGGAGCAGAAGCA 62.742 66.667 20.50 0.00 45.49 3.91
289 302 2.125552 CATGCCGACGGAGCAGAA 60.126 61.111 20.50 0.00 44.90 3.02
312 328 1.642513 TAGCCCGTGCCTCTCCTCTA 61.643 60.000 0.00 0.00 38.69 2.43
331 347 1.152525 ACGACCCCAGTGTCAGACT 60.153 57.895 1.31 0.00 34.88 3.24
338 354 2.207229 TGACCTCACGACCCCAGTG 61.207 63.158 0.00 0.00 40.71 3.66
360 376 3.063485 GAGAAGACACTCCTGAGCAAAC 58.937 50.000 0.00 0.00 0.00 2.93
366 382 6.918067 TTCAATTAGAGAAGACACTCCTGA 57.082 37.500 0.00 0.00 37.60 3.86
371 387 7.545965 CGTACCATTTCAATTAGAGAAGACACT 59.454 37.037 0.00 0.00 0.00 3.55
376 392 6.662414 TGCGTACCATTTCAATTAGAGAAG 57.338 37.500 0.00 0.00 0.00 2.85
379 395 6.092122 TGACTTGCGTACCATTTCAATTAGAG 59.908 38.462 0.00 0.00 0.00 2.43
386 402 3.120321 AGTGACTTGCGTACCATTTCA 57.880 42.857 0.00 0.00 0.00 2.69
391 407 1.139256 TCCAAAGTGACTTGCGTACCA 59.861 47.619 0.00 0.00 0.00 3.25
408 424 5.999205 ATTTACACAAGAATGCCATTCCA 57.001 34.783 13.69 0.00 40.13 3.53
409 425 6.397272 TGAATTTACACAAGAATGCCATTCC 58.603 36.000 13.69 0.00 40.13 3.01
422 438 9.897744 GAAGAATGAGTTGAATGAATTTACACA 57.102 29.630 0.00 0.00 0.00 3.72
471 487 1.135315 CAATTTCGTGGAGCAGCGG 59.865 57.895 0.00 0.00 0.00 5.52
474 490 2.653890 CAACACAATTTCGTGGAGCAG 58.346 47.619 1.48 0.00 41.38 4.24
490 506 2.589540 CATAGCCCTCCCGCAACA 59.410 61.111 0.00 0.00 0.00 3.33
491 507 2.893682 AAGCATAGCCCTCCCGCAAC 62.894 60.000 0.00 0.00 0.00 4.17
531 547 2.703798 CGATGCCAAACAGCCCAGG 61.704 63.158 0.00 0.00 0.00 4.45
535 551 1.589716 AAGAGCGATGCCAAACAGCC 61.590 55.000 0.00 0.00 0.00 4.85
538 554 1.001487 CAACAAGAGCGATGCCAAACA 60.001 47.619 0.00 0.00 0.00 2.83
542 558 1.291184 CGTCAACAAGAGCGATGCCA 61.291 55.000 0.00 0.00 0.00 4.92
548 564 5.450376 ACATTTATACGTCAACAAGAGCG 57.550 39.130 0.00 0.00 0.00 5.03
572 588 9.132923 ACCGATCTGATAAAATAGACTAGACAA 57.867 33.333 0.00 0.00 0.00 3.18
573 589 8.693120 ACCGATCTGATAAAATAGACTAGACA 57.307 34.615 0.00 0.00 0.00 3.41
599 615 4.522405 TGCTCTAGCCAATGCAACTAAAAA 59.478 37.500 0.00 0.00 41.13 1.94
600 616 4.078537 TGCTCTAGCCAATGCAACTAAAA 58.921 39.130 0.00 0.00 41.13 1.52
601 617 3.684908 TGCTCTAGCCAATGCAACTAAA 58.315 40.909 0.00 0.00 41.13 1.85
602 618 3.348647 TGCTCTAGCCAATGCAACTAA 57.651 42.857 0.00 0.00 41.13 2.24
603 619 3.208594 CATGCTCTAGCCAATGCAACTA 58.791 45.455 0.00 0.00 41.13 2.24
604 620 2.022195 CATGCTCTAGCCAATGCAACT 58.978 47.619 0.00 0.00 41.13 3.16
605 621 1.535437 GCATGCTCTAGCCAATGCAAC 60.535 52.381 11.37 2.38 44.74 4.17
606 622 0.742505 GCATGCTCTAGCCAATGCAA 59.257 50.000 11.37 0.00 44.74 4.08
607 623 2.411535 GCATGCTCTAGCCAATGCA 58.588 52.632 11.37 0.00 44.74 3.96
608 624 0.959553 ATGCATGCTCTAGCCAATGC 59.040 50.000 20.33 16.33 45.25 3.56
609 625 3.318275 AGAAATGCATGCTCTAGCCAATG 59.682 43.478 20.33 0.00 41.18 2.82
610 626 3.563223 AGAAATGCATGCTCTAGCCAAT 58.437 40.909 20.33 0.00 41.18 3.16
611 627 3.008835 AGAAATGCATGCTCTAGCCAA 57.991 42.857 20.33 0.00 41.18 4.52
612 628 2.723322 AGAAATGCATGCTCTAGCCA 57.277 45.000 20.33 0.00 41.18 4.75
613 629 3.470709 TGTAGAAATGCATGCTCTAGCC 58.529 45.455 20.33 7.53 41.18 3.93
614 630 3.059051 GCTGTAGAAATGCATGCTCTAGC 60.059 47.826 20.33 15.25 42.50 3.42
615 631 4.378774 AGCTGTAGAAATGCATGCTCTAG 58.621 43.478 20.33 9.63 0.00 2.43
616 632 4.375272 GAGCTGTAGAAATGCATGCTCTA 58.625 43.478 20.33 14.61 41.26 2.43
617 633 3.204526 GAGCTGTAGAAATGCATGCTCT 58.795 45.455 20.33 15.68 41.26 4.09
618 634 3.204526 AGAGCTGTAGAAATGCATGCTC 58.795 45.455 20.33 19.78 43.77 4.26
619 635 3.278668 AGAGCTGTAGAAATGCATGCT 57.721 42.857 20.33 1.86 0.00 3.79
620 636 3.060003 CGTAGAGCTGTAGAAATGCATGC 60.060 47.826 11.82 11.82 0.00 4.06
621 637 3.060003 GCGTAGAGCTGTAGAAATGCATG 60.060 47.826 0.00 0.00 44.04 4.06
622 638 3.126831 GCGTAGAGCTGTAGAAATGCAT 58.873 45.455 0.00 0.00 44.04 3.96
623 639 2.540515 GCGTAGAGCTGTAGAAATGCA 58.459 47.619 0.00 0.00 44.04 3.96
642 658 1.377536 GTTTCTCTCCAGCTCCATGC 58.622 55.000 0.00 0.00 43.29 4.06
643 659 1.741732 CGGTTTCTCTCCAGCTCCATG 60.742 57.143 0.00 0.00 0.00 3.66
644 660 0.539051 CGGTTTCTCTCCAGCTCCAT 59.461 55.000 0.00 0.00 0.00 3.41
645 661 0.541998 TCGGTTTCTCTCCAGCTCCA 60.542 55.000 0.00 0.00 0.00 3.86
646 662 0.174617 CTCGGTTTCTCTCCAGCTCC 59.825 60.000 0.00 0.00 0.00 4.70
647 663 0.459411 GCTCGGTTTCTCTCCAGCTC 60.459 60.000 0.00 0.00 0.00 4.09
648 664 1.188219 TGCTCGGTTTCTCTCCAGCT 61.188 55.000 0.00 0.00 33.57 4.24
649 665 0.739112 CTGCTCGGTTTCTCTCCAGC 60.739 60.000 0.00 0.00 33.27 4.85
650 666 0.108424 CCTGCTCGGTTTCTCTCCAG 60.108 60.000 0.00 0.00 0.00 3.86
651 667 1.975327 CCTGCTCGGTTTCTCTCCA 59.025 57.895 0.00 0.00 0.00 3.86
652 668 1.448717 GCCTGCTCGGTTTCTCTCC 60.449 63.158 0.00 0.00 34.25 3.71
658 674 0.328258 ACTTATGGCCTGCTCGGTTT 59.672 50.000 3.32 0.00 34.25 3.27
660 676 0.392998 CAACTTATGGCCTGCTCGGT 60.393 55.000 3.32 0.00 34.25 4.69
662 678 1.009829 GTCAACTTATGGCCTGCTCG 58.990 55.000 3.32 0.00 0.00 5.03
665 681 3.462021 CTCTAGTCAACTTATGGCCTGC 58.538 50.000 3.32 0.00 32.58 4.85
667 683 3.995636 TCCTCTAGTCAACTTATGGCCT 58.004 45.455 3.32 0.00 32.58 5.19
682 698 2.408565 CCCCTAACTTGCCATCCTCTA 58.591 52.381 0.00 0.00 0.00 2.43
709 725 4.730521 GCATAATAACTTTCGTGCTTCAGC 59.269 41.667 0.00 0.00 42.50 4.26
720 736 9.942850 ACTTTAATTGCCAAGCATAATAACTTT 57.057 25.926 0.00 0.00 38.76 2.66
728 744 6.338214 TGACAACTTTAATTGCCAAGCATA 57.662 33.333 0.00 0.00 38.76 3.14
733 749 5.538053 TGAGGATGACAACTTTAATTGCCAA 59.462 36.000 0.00 0.00 32.47 4.52
744 764 4.831674 TGATGATGTGAGGATGACAACT 57.168 40.909 0.00 0.00 34.53 3.16
773 793 0.108756 AGCTCCGAACGGCTTTAGAC 60.109 55.000 8.48 0.00 34.96 2.59
776 797 1.079405 CCAGCTCCGAACGGCTTTA 60.079 57.895 8.48 0.00 36.59 1.85
792 813 1.144969 GAACGTTCGAGACAATGCCA 58.855 50.000 13.36 0.00 0.00 4.92
793 814 3.949313 GAACGTTCGAGACAATGCC 57.051 52.632 13.36 0.00 0.00 4.40
805 1001 6.493116 ACGAATCTGATAAGTATCGAACGTT 58.507 36.000 13.74 0.00 34.16 3.99
821 1017 8.687301 GTTGGTGTTACAAAATTTACGAATCTG 58.313 33.333 0.00 0.00 31.17 2.90
822 1018 7.588488 CGTTGGTGTTACAAAATTTACGAATCT 59.412 33.333 0.00 0.00 31.17 2.40
825 1021 6.468319 CACGTTGGTGTTACAAAATTTACGAA 59.532 34.615 9.13 0.00 39.38 3.85
826 1022 5.964168 CACGTTGGTGTTACAAAATTTACGA 59.036 36.000 9.13 0.00 39.38 3.43
827 1023 6.175425 CACGTTGGTGTTACAAAATTTACG 57.825 37.500 0.00 0.00 39.38 3.18
842 1042 0.321298 GCCACTCCATACACGTTGGT 60.321 55.000 4.73 0.00 35.64 3.67
856 1056 2.360350 CTGCAATGTCGGGCCACT 60.360 61.111 4.39 0.00 0.00 4.00
864 1064 0.710567 CAGTCGTCGTCTGCAATGTC 59.289 55.000 6.56 0.00 0.00 3.06
865 1065 0.667487 CCAGTCGTCGTCTGCAATGT 60.667 55.000 13.15 0.00 0.00 2.71
875 1075 2.733026 ACGAAATTTTACCCAGTCGTCG 59.267 45.455 0.00 0.00 37.12 5.12
878 1078 4.212636 ACAAGACGAAATTTTACCCAGTCG 59.787 41.667 0.00 0.00 32.96 4.18
927 1127 4.430423 CGTCGTCGCCTTTGCAGC 62.430 66.667 0.00 0.00 37.32 5.25
946 1146 1.013596 CAGCGACAAACACTCCAACA 58.986 50.000 0.00 0.00 0.00 3.33
947 1147 0.317020 GCAGCGACAAACACTCCAAC 60.317 55.000 0.00 0.00 0.00 3.77
951 1151 1.082496 GCAGCAGCGACAAACACTC 60.082 57.895 0.00 0.00 0.00 3.51
952 1152 2.546494 GGCAGCAGCGACAAACACT 61.546 57.895 0.00 0.00 43.41 3.55
953 1153 2.050985 GGCAGCAGCGACAAACAC 60.051 61.111 0.00 0.00 43.41 3.32
954 1154 2.515757 TGGCAGCAGCGACAAACA 60.516 55.556 0.00 0.00 43.41 2.83
955 1155 2.253452 CTGGCAGCAGCGACAAAC 59.747 61.111 0.00 0.00 43.41 2.93
956 1156 3.663176 GCTGGCAGCAGCGACAAA 61.663 61.111 33.33 0.00 41.89 2.83
971 1171 1.298014 CTTCTTGCTCTTCCCGGCT 59.702 57.895 0.00 0.00 0.00 5.52
973 1173 1.078143 CCCTTCTTGCTCTTCCCGG 60.078 63.158 0.00 0.00 0.00 5.73
974 1174 1.078143 CCCCTTCTTGCTCTTCCCG 60.078 63.158 0.00 0.00 0.00 5.14
975 1175 0.698818 TTCCCCTTCTTGCTCTTCCC 59.301 55.000 0.00 0.00 0.00 3.97
977 1177 2.441410 CCTTTCCCCTTCTTGCTCTTC 58.559 52.381 0.00 0.00 0.00 2.87
978 1178 1.076187 CCCTTTCCCCTTCTTGCTCTT 59.924 52.381 0.00 0.00 0.00 2.85
979 1179 0.701147 CCCTTTCCCCTTCTTGCTCT 59.299 55.000 0.00 0.00 0.00 4.09
980 1180 0.323816 CCCCTTTCCCCTTCTTGCTC 60.324 60.000 0.00 0.00 0.00 4.26
981 1181 0.776080 TCCCCTTTCCCCTTCTTGCT 60.776 55.000 0.00 0.00 0.00 3.91
982 1182 0.336392 ATCCCCTTTCCCCTTCTTGC 59.664 55.000 0.00 0.00 0.00 4.01
983 1183 1.342374 CCATCCCCTTTCCCCTTCTTG 60.342 57.143 0.00 0.00 0.00 3.02
1363 1586 2.915659 TTGACCAGGGCGTCGAGT 60.916 61.111 0.00 0.00 35.40 4.18
1437 1664 7.401955 AAAGATTTCTGTCAGATGGGAAATC 57.598 36.000 18.21 18.21 46.68 2.17
1442 1669 6.430925 TGTGTAAAAGATTTCTGTCAGATGGG 59.569 38.462 2.68 0.00 0.00 4.00
1458 1685 1.066929 GGGCTTGGGCATGTGTAAAAG 60.067 52.381 0.00 0.00 40.87 2.27
1527 1776 3.694566 GTCCATGGGTGAAATTAGTGGAC 59.305 47.826 13.02 5.95 44.84 4.02
1541 1790 0.698238 TGGTCAAAGAGGTCCATGGG 59.302 55.000 13.02 0.00 0.00 4.00
1582 1834 1.130054 TCTTGCACTTCCCCTGCTCT 61.130 55.000 0.00 0.00 35.53 4.09
1662 1914 2.315925 TCGCCTTTATCAGAAGCCAG 57.684 50.000 0.00 0.00 0.00 4.85
1859 2111 2.355756 CGCATTCAGGATTTCCGTGATT 59.644 45.455 0.00 0.00 42.08 2.57
1860 2112 1.942657 CGCATTCAGGATTTCCGTGAT 59.057 47.619 0.00 0.00 42.08 3.06
1880 2132 6.500684 ACAAAGAACATCATGGTCATGTAC 57.499 37.500 11.36 0.00 36.30 2.90
1914 2167 3.983494 CCGAGCTCCATCGCCGAT 61.983 66.667 8.47 0.00 41.37 4.18
2029 2282 2.911143 CAGCGGCATTACCTCCCT 59.089 61.111 1.45 0.00 35.61 4.20
2250 2527 3.056821 CAGAGACCCACTGTTATTCGACA 60.057 47.826 0.00 0.00 0.00 4.35
2253 2530 3.056821 TCACAGAGACCCACTGTTATTCG 60.057 47.826 0.00 0.00 44.69 3.34
2308 2634 4.142038 GCTTCTGGGTAGTCCTTTTCAAA 58.858 43.478 0.00 0.00 36.20 2.69
2313 2639 2.441750 TGTTGCTTCTGGGTAGTCCTTT 59.558 45.455 0.00 0.00 36.20 3.11
2316 2642 2.027192 TCATGTTGCTTCTGGGTAGTCC 60.027 50.000 0.00 0.00 0.00 3.85
2446 2781 2.552315 AGTTTGTTTTGATGTCGGCGAT 59.448 40.909 14.79 0.00 0.00 4.58
2447 2782 1.944024 AGTTTGTTTTGATGTCGGCGA 59.056 42.857 4.99 4.99 0.00 5.54
2448 2783 2.032030 AGAGTTTGTTTTGATGTCGGCG 60.032 45.455 0.00 0.00 0.00 6.46
2455 2790 9.090692 CAATCAGTTTCAAGAGTTTGTTTTGAT 57.909 29.630 0.00 0.00 35.73 2.57
2490 2825 4.097437 TGCGTATCTCGTTCCAGAACTATT 59.903 41.667 8.77 0.00 42.13 1.73
2508 2843 2.700722 TATGTGATGGGCTTTGCGTA 57.299 45.000 0.00 0.00 0.00 4.42
2530 2865 3.565307 TCACCTGAAGTTTTGCTCCAAT 58.435 40.909 0.00 0.00 0.00 3.16
2566 2902 2.433604 CCTATGCTGACTCACTCCACAT 59.566 50.000 0.00 0.00 0.00 3.21
2599 2945 0.750249 GAACCAACCAACCCACCAAG 59.250 55.000 0.00 0.00 0.00 3.61
2602 2948 0.396556 AGTGAACCAACCAACCCACC 60.397 55.000 0.00 0.00 0.00 4.61
2603 2949 1.029681 GAGTGAACCAACCAACCCAC 58.970 55.000 0.00 0.00 0.00 4.61
2604 2950 0.464735 CGAGTGAACCAACCAACCCA 60.465 55.000 0.00 0.00 0.00 4.51
2605 2951 0.464916 ACGAGTGAACCAACCAACCC 60.465 55.000 0.00 0.00 0.00 4.11
2754 3100 7.007725 CACAATGCTTCTTATGATTTTGACGAC 59.992 37.037 0.00 0.00 0.00 4.34
3019 3365 3.610585 CGTTTCCTTTTGTGTGTGTGTGT 60.611 43.478 0.00 0.00 0.00 3.72
3020 3366 2.914214 CGTTTCCTTTTGTGTGTGTGTG 59.086 45.455 0.00 0.00 0.00 3.82
3021 3367 2.554893 ACGTTTCCTTTTGTGTGTGTGT 59.445 40.909 0.00 0.00 0.00 3.72
3022 3368 3.210358 ACGTTTCCTTTTGTGTGTGTG 57.790 42.857 0.00 0.00 0.00 3.82
3023 3369 3.926821 AACGTTTCCTTTTGTGTGTGT 57.073 38.095 0.00 0.00 0.00 3.72
3024 3370 5.910723 GGTATAACGTTTCCTTTTGTGTGTG 59.089 40.000 5.91 0.00 0.00 3.82
3025 3371 5.824097 AGGTATAACGTTTCCTTTTGTGTGT 59.176 36.000 5.91 0.00 0.00 3.72
3026 3372 6.308371 AGGTATAACGTTTCCTTTTGTGTG 57.692 37.500 5.91 0.00 0.00 3.82
3027 3373 6.543100 TGAAGGTATAACGTTTCCTTTTGTGT 59.457 34.615 23.08 8.79 39.91 3.72
3028 3374 6.961576 TGAAGGTATAACGTTTCCTTTTGTG 58.038 36.000 23.08 0.00 39.91 3.33
3029 3375 7.571080 TTGAAGGTATAACGTTTCCTTTTGT 57.429 32.000 23.08 9.57 39.91 2.83
3030 3376 8.859517 TTTTGAAGGTATAACGTTTCCTTTTG 57.140 30.769 23.08 0.00 39.91 2.44
3075 3445 3.443037 CTGTGCTAAGACGATCTTGAGG 58.557 50.000 9.58 3.29 37.29 3.86
3084 3454 4.201724 GGAATTGTAAGCTGTGCTAAGACG 60.202 45.833 0.00 0.00 38.25 4.18
3136 3506 0.185175 ACCCACTGGTTCCAACTTCC 59.815 55.000 0.00 0.00 44.75 3.46
3150 3520 8.556213 TTTTACATAATTGAGTACTGACCCAC 57.444 34.615 0.00 0.00 0.00 4.61
3152 3522 8.665685 CACTTTTACATAATTGAGTACTGACCC 58.334 37.037 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.