Multiple sequence alignment - TraesCS4A01G338000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G338000 chr4A 100.000 2510 0 0 1 2510 620291336 620288827 0.000000e+00 4636.0
1 TraesCS4A01G338000 chr5D 95.574 1446 52 4 865 2304 548954127 548952688 0.000000e+00 2305.0
2 TraesCS4A01G338000 chr5D 93.478 276 13 2 331 605 548954625 548954354 3.010000e-109 405.0
3 TraesCS4A01G338000 chr5D 86.283 226 17 7 698 909 548954078 548954303 1.500000e-57 233.0
4 TraesCS4A01G338000 chr5D 95.789 95 4 0 653 747 548954353 548954259 1.200000e-33 154.0
5 TraesCS4A01G338000 chr5D 100.000 68 0 0 2443 2510 548952179 548952112 2.620000e-25 126.0
6 TraesCS4A01G338000 chr5D 97.917 48 0 1 2258 2304 548954814 548954767 5.750000e-12 82.4
7 TraesCS4A01G338000 chr5B 91.884 1454 63 14 865 2304 700418000 700416588 0.000000e+00 1980.0
8 TraesCS4A01G338000 chr5B 91.716 338 21 5 327 662 700425209 700424877 1.760000e-126 462.0
9 TraesCS4A01G338000 chr5B 90.751 173 12 2 698 866 700417951 700418123 6.980000e-56 228.0
10 TraesCS4A01G338000 chr5B 97.059 68 2 0 2443 2510 700414777 700414710 5.670000e-22 115.0
11 TraesCS4A01G338000 chr5B 92.593 54 4 0 2444 2497 700438163 700438110 7.440000e-11 78.7
12 TraesCS4A01G338000 chr5B 100.000 31 0 0 828 858 700392140 700392170 9.700000e-05 58.4
13 TraesCS4A01G338000 chr3B 93.009 329 23 0 1 329 43823987 43823659 4.860000e-132 481.0
14 TraesCS4A01G338000 chr2D 92.401 329 25 0 1 329 605183447 605183775 1.050000e-128 470.0
15 TraesCS4A01G338000 chr7A 92.097 329 26 0 1 329 63917058 63917386 4.890000e-127 464.0
16 TraesCS4A01G338000 chr4B 92.097 329 26 0 1 329 639592180 639591852 4.890000e-127 464.0
17 TraesCS4A01G338000 chr2A 92.097 329 26 0 1 329 117353874 117353546 4.890000e-127 464.0
18 TraesCS4A01G338000 chr2A 86.207 145 20 0 2302 2446 136947574 136947430 9.290000e-35 158.0
19 TraesCS4A01G338000 chr1D 92.097 329 26 0 1 329 111511753 111511425 4.890000e-127 464.0
20 TraesCS4A01G338000 chr1B 92.097 329 26 0 1 329 629687161 629686833 4.890000e-127 464.0
21 TraesCS4A01G338000 chr1A 92.097 329 26 0 1 329 464124032 464124360 4.890000e-127 464.0
22 TraesCS4A01G338000 chr1A 92.121 330 24 2 1 329 571868313 571867985 4.890000e-127 464.0
23 TraesCS4A01G338000 chr6A 92.466 146 11 0 2301 2446 84983765 84983620 2.530000e-50 209.0
24 TraesCS4A01G338000 chr6A 90.441 136 13 0 2302 2437 606077546 606077681 1.980000e-41 180.0
25 TraesCS4A01G338000 chr6A 90.385 52 4 1 701 751 608285391 608285442 1.610000e-07 67.6
26 TraesCS4A01G338000 chr7D 90.411 146 10 3 2302 2446 602674662 602674804 3.300000e-44 189.0
27 TraesCS4A01G338000 chr3A 89.655 145 14 1 2302 2445 657092356 657092212 1.530000e-42 183.0
28 TraesCS4A01G338000 chr3A 86.986 146 19 0 2301 2446 69959448 69959303 5.550000e-37 165.0
29 TraesCS4A01G338000 chrUn 89.313 131 13 1 2316 2446 79229969 79229840 2.000000e-36 163.0
30 TraesCS4A01G338000 chr6B 86.364 132 16 2 2316 2447 588079970 588079841 2.600000e-30 143.0
31 TraesCS4A01G338000 chr6B 92.308 52 3 1 701 751 703389515 703389566 3.460000e-09 73.1
32 TraesCS4A01G338000 chr6D 90.385 52 4 1 701 751 461501444 461501495 1.610000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G338000 chr4A 620288827 620291336 2509 True 4636.00 4636 100.0000 1 2510 1 chr4A.!!$R1 2509
1 TraesCS4A01G338000 chr5D 548952112 548954814 2702 True 614.48 2305 96.5516 331 2510 5 chr5D.!!$R1 2179
2 TraesCS4A01G338000 chr5B 700414710 700418000 3290 True 1047.50 1980 94.4715 865 2510 2 chr5B.!!$R3 1645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.03601 CCACCGCCTCAATGACTTCT 60.036 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 2220 0.031178 GCAACAACAGCACTGGAAGG 59.969 55.0 2.21 0.0 39.3 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.653557 ATCAAAAGCAACCGTCCCC 58.346 52.632 0.00 0.00 0.00 4.81
22 23 1.396607 AAAAGCAACCGTCCCCCAAC 61.397 55.000 0.00 0.00 0.00 3.77
23 24 2.292785 AAAGCAACCGTCCCCCAACT 62.293 55.000 0.00 0.00 0.00 3.16
26 27 1.302511 CAACCGTCCCCCAACTGAG 60.303 63.158 0.00 0.00 0.00 3.35
29 30 2.266055 CGTCCCCCAACTGAGAGC 59.734 66.667 0.00 0.00 0.00 4.09
41 42 2.985406 CTGAGAGCAGTTTGCCTTTC 57.015 50.000 0.00 0.00 46.52 2.62
42 43 1.538950 CTGAGAGCAGTTTGCCTTTCC 59.461 52.381 0.00 0.00 46.52 3.13
43 44 1.133823 TGAGAGCAGTTTGCCTTTCCA 60.134 47.619 0.00 0.00 46.52 3.53
45 46 1.683385 AGAGCAGTTTGCCTTTCCAAC 59.317 47.619 0.00 0.00 46.52 3.77
47 48 1.410153 AGCAGTTTGCCTTTCCAACTG 59.590 47.619 6.87 6.87 46.52 3.16
48 49 1.856802 CAGTTTGCCTTTCCAACTGC 58.143 50.000 0.00 0.00 0.00 4.40
49 50 1.410153 CAGTTTGCCTTTCCAACTGCT 59.590 47.619 0.00 0.00 0.00 4.24
50 51 2.110578 AGTTTGCCTTTCCAACTGCTT 58.889 42.857 0.00 0.00 0.00 3.91
52 53 3.704061 AGTTTGCCTTTCCAACTGCTTAA 59.296 39.130 0.00 0.00 0.00 1.85
53 54 3.726291 TTGCCTTTCCAACTGCTTAAC 57.274 42.857 0.00 0.00 0.00 2.01
54 55 1.960689 TGCCTTTCCAACTGCTTAACC 59.039 47.619 0.00 0.00 0.00 2.85
55 56 1.068541 GCCTTTCCAACTGCTTAACCG 60.069 52.381 0.00 0.00 0.00 4.44
56 57 2.227194 CCTTTCCAACTGCTTAACCGT 58.773 47.619 0.00 0.00 0.00 4.83
57 58 2.621526 CCTTTCCAACTGCTTAACCGTT 59.378 45.455 0.00 0.00 0.00 4.44
58 59 3.067601 CCTTTCCAACTGCTTAACCGTTT 59.932 43.478 0.00 0.00 0.00 3.60
59 60 3.974871 TTCCAACTGCTTAACCGTTTC 57.025 42.857 0.00 0.00 0.00 2.78
60 61 3.202829 TCCAACTGCTTAACCGTTTCT 57.797 42.857 0.00 0.00 0.00 2.52
61 62 3.135994 TCCAACTGCTTAACCGTTTCTC 58.864 45.455 0.00 0.00 0.00 2.87
62 63 3.139077 CCAACTGCTTAACCGTTTCTCT 58.861 45.455 0.00 0.00 0.00 3.10
63 64 4.039488 TCCAACTGCTTAACCGTTTCTCTA 59.961 41.667 0.00 0.00 0.00 2.43
64 65 4.389077 CCAACTGCTTAACCGTTTCTCTAG 59.611 45.833 0.00 0.00 0.00 2.43
65 66 5.227908 CAACTGCTTAACCGTTTCTCTAGA 58.772 41.667 0.00 0.00 0.00 2.43
66 67 4.807443 ACTGCTTAACCGTTTCTCTAGAC 58.193 43.478 0.00 0.00 0.00 2.59
67 68 3.829948 TGCTTAACCGTTTCTCTAGACG 58.170 45.455 0.00 0.00 38.90 4.18
70 71 2.633199 AACCGTTTCTCTAGACGCTC 57.367 50.000 0.00 0.00 37.91 5.03
71 72 0.810016 ACCGTTTCTCTAGACGCTCC 59.190 55.000 0.00 0.00 37.91 4.70
72 73 1.096416 CCGTTTCTCTAGACGCTCCT 58.904 55.000 0.00 0.00 37.91 3.69
73 74 1.064357 CCGTTTCTCTAGACGCTCCTC 59.936 57.143 0.00 0.00 37.91 3.71
75 76 3.196463 CGTTTCTCTAGACGCTCCTCTA 58.804 50.000 0.00 0.00 32.11 2.43
77 78 3.908643 TTCTCTAGACGCTCCTCTACA 57.091 47.619 0.00 0.00 0.00 2.74
79 80 3.734463 TCTCTAGACGCTCCTCTACATG 58.266 50.000 0.00 0.00 0.00 3.21
81 82 2.158740 TCTAGACGCTCCTCTACATGCT 60.159 50.000 0.00 0.00 0.00 3.79
83 84 1.407258 AGACGCTCCTCTACATGCTTC 59.593 52.381 0.00 0.00 0.00 3.86
85 86 0.461548 CGCTCCTCTACATGCTTCCA 59.538 55.000 0.00 0.00 0.00 3.53
86 87 1.804372 CGCTCCTCTACATGCTTCCAC 60.804 57.143 0.00 0.00 0.00 4.02
88 89 2.482839 GCTCCTCTACATGCTTCCACTC 60.483 54.545 0.00 0.00 0.00 3.51
89 90 3.030291 CTCCTCTACATGCTTCCACTCT 58.970 50.000 0.00 0.00 0.00 3.24
90 91 2.762887 TCCTCTACATGCTTCCACTCTG 59.237 50.000 0.00 0.00 0.00 3.35
91 92 2.548875 CTCTACATGCTTCCACTCTGC 58.451 52.381 0.00 0.00 0.00 4.26
93 94 2.302733 TCTACATGCTTCCACTCTGCAA 59.697 45.455 0.00 0.00 40.24 4.08
96 97 1.134367 CATGCTTCCACTCTGCAATGG 59.866 52.381 5.17 5.17 40.24 3.16
97 98 0.111061 TGCTTCCACTCTGCAATGGT 59.889 50.000 10.30 0.00 37.27 3.55
99 100 1.883638 GCTTCCACTCTGCAATGGTGA 60.884 52.381 12.87 3.62 37.27 4.02
102 103 1.310933 CCACTCTGCAATGGTGAGGC 61.311 60.000 12.87 0.00 33.32 4.70
103 104 1.376424 ACTCTGCAATGGTGAGGCG 60.376 57.895 5.07 0.00 32.58 5.52
104 105 2.747460 TCTGCAATGGTGAGGCGC 60.747 61.111 0.00 0.00 0.00 6.53
105 106 3.818787 CTGCAATGGTGAGGCGCC 61.819 66.667 21.89 21.89 34.12 6.53
108 109 3.499737 CAATGGTGAGGCGCCGAC 61.500 66.667 23.20 21.35 36.72 4.79
109 110 4.015406 AATGGTGAGGCGCCGACA 62.015 61.111 26.66 24.25 36.72 4.35
110 111 3.545124 AATGGTGAGGCGCCGACAA 62.545 57.895 26.66 19.56 36.72 3.18
111 112 2.819984 AATGGTGAGGCGCCGACAAT 62.820 55.000 26.66 20.74 36.72 2.71
112 113 3.499737 GGTGAGGCGCCGACAATG 61.500 66.667 26.66 0.00 0.00 2.82
114 115 2.032634 GTGAGGCGCCGACAATGAA 61.033 57.895 25.59 5.46 0.00 2.57
116 117 1.089481 TGAGGCGCCGACAATGAATC 61.089 55.000 23.20 10.37 0.00 2.52
127 128 5.567234 CGACAATGAATCGGTATTCTCAG 57.433 43.478 0.00 0.00 41.83 3.35
129 130 5.923114 CGACAATGAATCGGTATTCTCAGAT 59.077 40.000 0.00 0.00 41.83 2.90
130 131 7.084486 CGACAATGAATCGGTATTCTCAGATA 58.916 38.462 0.00 0.00 41.83 1.98
131 132 7.757173 CGACAATGAATCGGTATTCTCAGATAT 59.243 37.037 0.00 0.00 41.83 1.63
132 133 9.429359 GACAATGAATCGGTATTCTCAGATATT 57.571 33.333 0.00 0.00 41.83 1.28
133 134 9.784531 ACAATGAATCGGTATTCTCAGATATTT 57.215 29.630 0.00 0.00 41.83 1.40
139 140 9.587772 AATCGGTATTCTCAGATATTTAATCGG 57.412 33.333 0.00 0.00 0.00 4.18
140 141 7.544622 TCGGTATTCTCAGATATTTAATCGGG 58.455 38.462 0.00 0.00 0.00 5.14
141 142 7.395206 TCGGTATTCTCAGATATTTAATCGGGA 59.605 37.037 0.00 0.00 0.00 5.14
142 143 8.033038 CGGTATTCTCAGATATTTAATCGGGAA 58.967 37.037 0.00 0.00 0.00 3.97
143 144 9.892130 GGTATTCTCAGATATTTAATCGGGAAT 57.108 33.333 0.00 0.00 31.74 3.01
146 147 8.621532 TTCTCAGATATTTAATCGGGAATTGG 57.378 34.615 0.00 0.00 0.00 3.16
147 148 7.973402 TCTCAGATATTTAATCGGGAATTGGA 58.027 34.615 0.00 0.00 0.00 3.53
148 149 7.878127 TCTCAGATATTTAATCGGGAATTGGAC 59.122 37.037 0.00 0.00 0.00 4.02
150 151 8.163408 TCAGATATTTAATCGGGAATTGGACAT 58.837 33.333 0.00 0.00 0.00 3.06
152 153 7.944554 AGATATTTAATCGGGAATTGGACATGT 59.055 33.333 0.00 0.00 0.00 3.21
154 155 6.687081 TTTAATCGGGAATTGGACATGTAC 57.313 37.500 0.00 0.00 0.00 2.90
155 156 2.303163 TCGGGAATTGGACATGTACG 57.697 50.000 3.00 0.00 0.00 3.67
156 157 0.655733 CGGGAATTGGACATGTACGC 59.344 55.000 3.00 0.00 0.00 4.42
157 158 1.745232 GGGAATTGGACATGTACGCA 58.255 50.000 3.00 0.00 0.00 5.24
158 159 2.088423 GGGAATTGGACATGTACGCAA 58.912 47.619 3.00 0.00 0.00 4.85
159 160 2.159435 GGGAATTGGACATGTACGCAAC 60.159 50.000 3.00 0.00 0.00 4.17
161 162 2.192664 ATTGGACATGTACGCAACCA 57.807 45.000 3.00 0.12 0.00 3.67
163 164 1.968704 TGGACATGTACGCAACCAAA 58.031 45.000 3.00 0.00 0.00 3.28
164 165 2.509569 TGGACATGTACGCAACCAAAT 58.490 42.857 3.00 0.00 0.00 2.32
165 166 3.676093 TGGACATGTACGCAACCAAATA 58.324 40.909 3.00 0.00 0.00 1.40
166 167 3.687212 TGGACATGTACGCAACCAAATAG 59.313 43.478 3.00 0.00 0.00 1.73
167 168 3.064820 GGACATGTACGCAACCAAATAGG 59.935 47.826 0.00 0.00 45.67 2.57
181 182 3.502211 CCAAATAGGTCACCATAATCGGC 59.498 47.826 0.00 0.00 0.00 5.54
182 183 3.418684 AATAGGTCACCATAATCGGCC 57.581 47.619 0.00 0.00 0.00 6.13
183 184 1.796017 TAGGTCACCATAATCGGCCA 58.204 50.000 2.24 0.00 0.00 5.36
185 186 0.818040 GGTCACCATAATCGGCCACC 60.818 60.000 2.24 0.00 0.00 4.61
197 198 2.045926 GCCACCGCCTCAATGACT 60.046 61.111 0.00 0.00 0.00 3.41
198 199 1.675641 GCCACCGCCTCAATGACTT 60.676 57.895 0.00 0.00 0.00 3.01
199 200 1.648467 GCCACCGCCTCAATGACTTC 61.648 60.000 0.00 0.00 0.00 3.01
200 201 0.036010 CCACCGCCTCAATGACTTCT 60.036 55.000 0.00 0.00 0.00 2.85
201 202 1.363744 CACCGCCTCAATGACTTCTC 58.636 55.000 0.00 0.00 0.00 2.87
202 203 0.250513 ACCGCCTCAATGACTTCTCC 59.749 55.000 0.00 0.00 0.00 3.71
203 204 0.250234 CCGCCTCAATGACTTCTCCA 59.750 55.000 0.00 0.00 0.00 3.86
204 205 1.339055 CCGCCTCAATGACTTCTCCAA 60.339 52.381 0.00 0.00 0.00 3.53
205 206 2.426522 CGCCTCAATGACTTCTCCAAA 58.573 47.619 0.00 0.00 0.00 3.28
206 207 2.417933 CGCCTCAATGACTTCTCCAAAG 59.582 50.000 0.00 0.00 0.00 2.77
207 208 2.163211 GCCTCAATGACTTCTCCAAAGC 59.837 50.000 0.00 0.00 0.00 3.51
208 209 3.415212 CCTCAATGACTTCTCCAAAGCA 58.585 45.455 0.00 0.00 0.00 3.91
209 210 3.439476 CCTCAATGACTTCTCCAAAGCAG 59.561 47.826 0.00 0.00 0.00 4.24
210 211 4.321718 CTCAATGACTTCTCCAAAGCAGA 58.678 43.478 0.00 0.00 0.00 4.26
211 212 4.717877 TCAATGACTTCTCCAAAGCAGAA 58.282 39.130 0.00 0.00 0.00 3.02
212 213 4.516698 TCAATGACTTCTCCAAAGCAGAAC 59.483 41.667 0.00 0.00 0.00 3.01
213 214 2.483876 TGACTTCTCCAAAGCAGAACG 58.516 47.619 0.00 0.00 0.00 3.95
214 215 2.102420 TGACTTCTCCAAAGCAGAACGA 59.898 45.455 0.00 0.00 0.00 3.85
215 216 3.244215 TGACTTCTCCAAAGCAGAACGAT 60.244 43.478 0.00 0.00 0.00 3.73
216 217 3.744660 ACTTCTCCAAAGCAGAACGATT 58.255 40.909 0.00 0.00 0.00 3.34
217 218 3.748568 ACTTCTCCAAAGCAGAACGATTC 59.251 43.478 0.00 0.00 0.00 2.52
218 219 3.401033 TCTCCAAAGCAGAACGATTCA 57.599 42.857 0.00 0.00 0.00 2.57
219 220 3.067106 TCTCCAAAGCAGAACGATTCAC 58.933 45.455 0.00 0.00 0.00 3.18
220 221 3.070018 CTCCAAAGCAGAACGATTCACT 58.930 45.455 0.00 0.00 0.00 3.41
221 222 3.476552 TCCAAAGCAGAACGATTCACTT 58.523 40.909 0.00 0.00 32.02 3.16
222 223 3.882888 TCCAAAGCAGAACGATTCACTTT 59.117 39.130 0.00 1.74 38.22 2.66
223 224 4.338118 TCCAAAGCAGAACGATTCACTTTT 59.662 37.500 0.00 0.00 36.68 2.27
224 225 5.529430 TCCAAAGCAGAACGATTCACTTTTA 59.471 36.000 0.00 0.00 36.68 1.52
225 226 6.206634 TCCAAAGCAGAACGATTCACTTTTAT 59.793 34.615 0.00 0.00 36.68 1.40
226 227 6.306356 CCAAAGCAGAACGATTCACTTTTATG 59.694 38.462 0.00 0.00 36.68 1.90
227 228 5.551760 AGCAGAACGATTCACTTTTATGG 57.448 39.130 0.00 0.00 0.00 2.74
228 229 5.245531 AGCAGAACGATTCACTTTTATGGA 58.754 37.500 0.00 0.00 0.00 3.41
229 230 5.705441 AGCAGAACGATTCACTTTTATGGAA 59.295 36.000 0.00 0.00 0.00 3.53
230 231 6.024049 GCAGAACGATTCACTTTTATGGAAG 58.976 40.000 0.00 0.00 0.00 3.46
231 232 6.348540 GCAGAACGATTCACTTTTATGGAAGT 60.349 38.462 0.00 0.00 40.37 3.01
232 233 7.148474 GCAGAACGATTCACTTTTATGGAAGTA 60.148 37.037 0.00 0.00 37.76 2.24
233 234 8.883731 CAGAACGATTCACTTTTATGGAAGTAT 58.116 33.333 0.00 0.00 37.76 2.12
246 247 9.983024 TTTTATGGAAGTATATTTTGAGACCCA 57.017 29.630 0.00 0.00 0.00 4.51
247 248 9.627123 TTTATGGAAGTATATTTTGAGACCCAG 57.373 33.333 0.00 0.00 0.00 4.45
248 249 5.437060 TGGAAGTATATTTTGAGACCCAGC 58.563 41.667 0.00 0.00 0.00 4.85
249 250 5.045213 TGGAAGTATATTTTGAGACCCAGCA 60.045 40.000 0.00 0.00 0.00 4.41
250 251 6.064717 GGAAGTATATTTTGAGACCCAGCAT 58.935 40.000 0.00 0.00 0.00 3.79
251 252 6.547510 GGAAGTATATTTTGAGACCCAGCATT 59.452 38.462 0.00 0.00 0.00 3.56
252 253 7.068716 GGAAGTATATTTTGAGACCCAGCATTT 59.931 37.037 0.00 0.00 0.00 2.32
253 254 7.338800 AGTATATTTTGAGACCCAGCATTTG 57.661 36.000 0.00 0.00 0.00 2.32
254 255 2.818130 TTTTGAGACCCAGCATTTGC 57.182 45.000 0.00 0.00 42.49 3.68
265 266 3.477504 GCATTTGCTCAAACGCTGA 57.522 47.368 6.20 0.00 36.66 4.26
266 267 1.769733 GCATTTGCTCAAACGCTGAA 58.230 45.000 6.20 0.00 36.66 3.02
267 268 2.126467 GCATTTGCTCAAACGCTGAAA 58.874 42.857 6.20 0.00 36.66 2.69
268 269 2.154389 GCATTTGCTCAAACGCTGAAAG 59.846 45.455 6.20 0.00 36.66 2.62
269 270 2.154389 CATTTGCTCAAACGCTGAAAGC 59.846 45.455 0.00 0.00 44.05 3.51
270 271 2.223782 ATTTGCTCAAACGCTGAAAGCA 60.224 40.909 0.00 0.00 46.27 3.91
271 272 3.737663 ATTTGCTCAAACGCTGAAAGCAA 60.738 39.130 4.12 4.12 46.27 3.91
272 273 5.551580 ATTTGCTCAAACGCTGAAAGCAAG 61.552 41.667 7.96 0.00 46.27 4.01
273 274 7.675455 ATTTGCTCAAACGCTGAAAGCAAGA 62.675 40.000 7.96 1.85 46.27 3.02
285 286 5.659440 TGAAAGCAAGAGTTTCAGGTTTT 57.341 34.783 0.00 0.00 38.66 2.43
286 287 5.410067 TGAAAGCAAGAGTTTCAGGTTTTG 58.590 37.500 0.00 0.00 38.66 2.44
287 288 5.184864 TGAAAGCAAGAGTTTCAGGTTTTGA 59.815 36.000 0.00 0.00 38.66 2.69
288 289 4.907879 AGCAAGAGTTTCAGGTTTTGAG 57.092 40.909 0.00 0.00 37.07 3.02
289 290 3.067320 AGCAAGAGTTTCAGGTTTTGAGC 59.933 43.478 0.00 0.00 37.07 4.26
290 291 3.796844 GCAAGAGTTTCAGGTTTTGAGCC 60.797 47.826 0.00 0.00 37.07 4.70
291 292 3.584733 AGAGTTTCAGGTTTTGAGCCT 57.415 42.857 0.00 0.00 37.07 4.58
292 293 3.903467 AGAGTTTCAGGTTTTGAGCCTT 58.097 40.909 0.00 0.00 37.07 4.35
293 294 3.633986 AGAGTTTCAGGTTTTGAGCCTTG 59.366 43.478 0.00 0.00 37.07 3.61
294 295 3.365472 AGTTTCAGGTTTTGAGCCTTGT 58.635 40.909 0.00 0.00 37.07 3.16
295 296 3.381590 AGTTTCAGGTTTTGAGCCTTGTC 59.618 43.478 0.00 0.00 37.07 3.18
296 297 1.981256 TCAGGTTTTGAGCCTTGTCC 58.019 50.000 0.00 0.00 33.31 4.02
297 298 1.214175 TCAGGTTTTGAGCCTTGTCCA 59.786 47.619 0.00 0.00 33.31 4.02
298 299 1.610522 CAGGTTTTGAGCCTTGTCCAG 59.389 52.381 0.00 0.00 33.31 3.86
299 300 1.494721 AGGTTTTGAGCCTTGTCCAGA 59.505 47.619 0.00 0.00 31.04 3.86
300 301 2.108952 AGGTTTTGAGCCTTGTCCAGAT 59.891 45.455 0.00 0.00 31.04 2.90
301 302 2.489722 GGTTTTGAGCCTTGTCCAGATC 59.510 50.000 0.00 0.00 0.00 2.75
302 303 3.149196 GTTTTGAGCCTTGTCCAGATCA 58.851 45.455 0.00 0.00 0.00 2.92
303 304 3.726557 TTTGAGCCTTGTCCAGATCAT 57.273 42.857 0.00 0.00 0.00 2.45
304 305 2.704464 TGAGCCTTGTCCAGATCATG 57.296 50.000 0.00 0.00 0.00 3.07
305 306 1.911357 TGAGCCTTGTCCAGATCATGT 59.089 47.619 0.00 0.00 0.00 3.21
306 307 2.306805 TGAGCCTTGTCCAGATCATGTT 59.693 45.455 0.00 0.00 0.00 2.71
307 308 2.941720 GAGCCTTGTCCAGATCATGTTC 59.058 50.000 0.00 0.00 0.00 3.18
308 309 2.019984 GCCTTGTCCAGATCATGTTCC 58.980 52.381 0.00 0.00 0.00 3.62
309 310 2.618816 GCCTTGTCCAGATCATGTTCCA 60.619 50.000 0.00 0.00 0.00 3.53
310 311 3.894759 CCTTGTCCAGATCATGTTCCAT 58.105 45.455 0.00 0.00 0.00 3.41
311 312 4.686944 GCCTTGTCCAGATCATGTTCCATA 60.687 45.833 0.00 0.00 0.00 2.74
312 313 5.439721 CCTTGTCCAGATCATGTTCCATAA 58.560 41.667 0.00 0.00 0.00 1.90
313 314 5.887598 CCTTGTCCAGATCATGTTCCATAAA 59.112 40.000 0.00 0.00 0.00 1.40
314 315 6.377996 CCTTGTCCAGATCATGTTCCATAAAA 59.622 38.462 0.00 0.00 0.00 1.52
315 316 7.093814 CCTTGTCCAGATCATGTTCCATAAAAA 60.094 37.037 0.00 0.00 0.00 1.94
316 317 7.395190 TGTCCAGATCATGTTCCATAAAAAG 57.605 36.000 0.00 0.00 0.00 2.27
317 318 7.174413 TGTCCAGATCATGTTCCATAAAAAGA 58.826 34.615 0.00 0.00 0.00 2.52
318 319 7.669304 TGTCCAGATCATGTTCCATAAAAAGAA 59.331 33.333 0.00 0.00 0.00 2.52
319 320 8.689972 GTCCAGATCATGTTCCATAAAAAGAAT 58.310 33.333 0.00 0.00 0.00 2.40
320 321 8.906867 TCCAGATCATGTTCCATAAAAAGAATC 58.093 33.333 0.00 0.00 0.00 2.52
321 322 7.859377 CCAGATCATGTTCCATAAAAAGAATCG 59.141 37.037 0.00 0.00 0.00 3.34
322 323 8.400947 CAGATCATGTTCCATAAAAAGAATCGT 58.599 33.333 0.00 0.00 0.00 3.73
323 324 8.960591 AGATCATGTTCCATAAAAAGAATCGTT 58.039 29.630 0.00 0.00 0.00 3.85
324 325 9.573133 GATCATGTTCCATAAAAAGAATCGTTT 57.427 29.630 0.00 0.00 0.00 3.60
325 326 8.964420 TCATGTTCCATAAAAAGAATCGTTTC 57.036 30.769 0.00 0.00 0.00 2.78
326 327 8.572185 TCATGTTCCATAAAAAGAATCGTTTCA 58.428 29.630 8.83 0.00 34.08 2.69
327 328 9.357652 CATGTTCCATAAAAAGAATCGTTTCAT 57.642 29.630 8.83 0.00 34.08 2.57
328 329 8.964420 TGTTCCATAAAAAGAATCGTTTCATC 57.036 30.769 8.83 0.00 34.08 2.92
329 330 8.026607 TGTTCCATAAAAAGAATCGTTTCATCC 58.973 33.333 8.83 0.00 34.08 3.51
330 331 7.695480 TCCATAAAAAGAATCGTTTCATCCA 57.305 32.000 8.83 0.00 34.08 3.41
331 332 8.292444 TCCATAAAAAGAATCGTTTCATCCAT 57.708 30.769 8.83 0.00 34.08 3.41
332 333 8.748412 TCCATAAAAAGAATCGTTTCATCCATT 58.252 29.630 8.83 0.22 34.08 3.16
333 334 9.023967 CCATAAAAAGAATCGTTTCATCCATTC 57.976 33.333 8.83 0.00 34.08 2.67
334 335 9.571810 CATAAAAAGAATCGTTTCATCCATTCA 57.428 29.630 8.83 0.00 34.08 2.57
335 336 9.793252 ATAAAAAGAATCGTTTCATCCATTCAG 57.207 29.630 8.83 0.00 34.08 3.02
336 337 6.824305 AAAGAATCGTTTCATCCATTCAGT 57.176 33.333 8.83 0.00 34.08 3.41
337 338 7.921786 AAAGAATCGTTTCATCCATTCAGTA 57.078 32.000 8.83 0.00 34.08 2.74
338 339 7.921786 AAGAATCGTTTCATCCATTCAGTAA 57.078 32.000 8.83 0.00 34.08 2.24
339 340 8.511604 AAGAATCGTTTCATCCATTCAGTAAT 57.488 30.769 8.83 0.00 34.08 1.89
384 385 7.394816 TCTTTAAGAACATTTCTTCCCGATCT 58.605 34.615 4.45 0.00 46.62 2.75
458 459 7.822161 TTATATTGCAACTATGTTCTGCCAT 57.178 32.000 0.00 0.00 35.13 4.40
479 480 6.385843 CCATATCTCTCCTCTTGTAACGATG 58.614 44.000 0.00 0.00 0.00 3.84
487 488 6.602009 TCTCCTCTTGTAACGATGTAATCAGA 59.398 38.462 0.00 0.00 45.97 3.27
491 492 7.545965 CCTCTTGTAACGATGTAATCAGAACTT 59.454 37.037 0.00 0.00 45.97 2.66
519 520 7.822822 GGCTTATTGTTTCACTACTTCCTTCTA 59.177 37.037 0.00 0.00 0.00 2.10
572 574 8.934697 ACATCTTAAATCCTGTGGCTAAGTATA 58.065 33.333 0.00 0.00 0.00 1.47
573 575 9.950496 CATCTTAAATCCTGTGGCTAAGTATAT 57.050 33.333 0.00 0.00 0.00 0.86
596 598 5.554822 ATTACTTTGTTGTGTCACGTGTT 57.445 34.783 16.51 0.00 0.00 3.32
602 604 6.147492 ACTTTGTTGTGTCACGTGTTTTACTA 59.853 34.615 16.51 5.08 0.00 1.82
605 607 5.811100 TGTTGTGTCACGTGTTTTACTATCA 59.189 36.000 16.51 5.08 0.00 2.15
606 608 6.313164 TGTTGTGTCACGTGTTTTACTATCAA 59.687 34.615 16.51 10.12 0.00 2.57
607 609 6.905544 TGTGTCACGTGTTTTACTATCAAA 57.094 33.333 16.51 0.00 0.00 2.69
608 610 6.707711 TGTGTCACGTGTTTTACTATCAAAC 58.292 36.000 16.51 1.75 35.11 2.93
609 611 6.535865 TGTGTCACGTGTTTTACTATCAAACT 59.464 34.615 16.51 0.00 35.50 2.66
610 612 7.064847 TGTGTCACGTGTTTTACTATCAAACTT 59.935 33.333 16.51 0.00 35.50 2.66
611 613 7.372396 GTGTCACGTGTTTTACTATCAAACTTG 59.628 37.037 16.51 0.00 35.50 3.16
612 614 7.278203 TGTCACGTGTTTTACTATCAAACTTGA 59.722 33.333 16.51 0.00 42.14 3.02
614 616 8.832521 TCACGTGTTTTACTATCAAACTTGATT 58.167 29.630 16.51 0.00 45.13 2.57
627 629 8.812513 ATCAAACTTGATTATTGATCCTCACA 57.187 30.769 0.00 0.00 45.13 3.58
628 630 8.272545 TCAAACTTGATTATTGATCCTCACAG 57.727 34.615 0.00 0.00 33.60 3.66
629 631 8.102676 TCAAACTTGATTATTGATCCTCACAGA 58.897 33.333 0.00 0.00 33.60 3.41
630 632 8.733458 CAAACTTGATTATTGATCCTCACAGAA 58.267 33.333 0.00 0.00 33.60 3.02
631 633 8.503458 AACTTGATTATTGATCCTCACAGAAG 57.497 34.615 0.00 0.00 33.60 2.85
632 634 7.855375 ACTTGATTATTGATCCTCACAGAAGA 58.145 34.615 0.00 0.00 33.60 2.87
633 635 8.324306 ACTTGATTATTGATCCTCACAGAAGAA 58.676 33.333 0.00 0.00 33.60 2.52
634 636 9.170734 CTTGATTATTGATCCTCACAGAAGAAA 57.829 33.333 0.00 0.00 33.60 2.52
635 637 8.728337 TGATTATTGATCCTCACAGAAGAAAG 57.272 34.615 0.00 0.00 33.60 2.62
636 638 8.542926 TGATTATTGATCCTCACAGAAGAAAGA 58.457 33.333 0.00 0.00 33.60 2.52
637 639 9.558396 GATTATTGATCCTCACAGAAGAAAGAT 57.442 33.333 0.00 0.00 0.00 2.40
638 640 8.728337 TTATTGATCCTCACAGAAGAAAGATG 57.272 34.615 0.00 0.00 0.00 2.90
639 641 4.511527 TGATCCTCACAGAAGAAAGATGC 58.488 43.478 0.00 0.00 0.00 3.91
640 642 2.964740 TCCTCACAGAAGAAAGATGCG 58.035 47.619 0.00 0.00 0.00 4.73
641 643 2.562738 TCCTCACAGAAGAAAGATGCGA 59.437 45.455 0.00 0.00 0.00 5.10
642 644 2.670414 CCTCACAGAAGAAAGATGCGAC 59.330 50.000 0.00 0.00 0.00 5.19
643 645 3.583806 CTCACAGAAGAAAGATGCGACT 58.416 45.455 0.00 0.00 0.00 4.18
644 646 3.993081 CTCACAGAAGAAAGATGCGACTT 59.007 43.478 0.00 0.00 0.00 3.01
645 647 4.380531 TCACAGAAGAAAGATGCGACTTT 58.619 39.130 7.49 7.49 41.86 2.66
646 648 4.816385 TCACAGAAGAAAGATGCGACTTTT 59.184 37.500 8.83 0.00 39.71 2.27
647 649 5.296780 TCACAGAAGAAAGATGCGACTTTTT 59.703 36.000 8.83 2.06 39.71 1.94
754 756 8.773404 AAAGATATCGAAATAAATACTCCCGG 57.227 34.615 0.00 0.00 0.00 5.73
755 757 6.875076 AGATATCGAAATAAATACTCCCGGG 58.125 40.000 16.85 16.85 0.00 5.73
757 759 2.701951 TCGAAATAAATACTCCCGGGCT 59.298 45.455 18.49 5.53 0.00 5.19
758 760 2.806244 CGAAATAAATACTCCCGGGCTG 59.194 50.000 18.49 14.05 0.00 4.85
759 761 2.951229 AATAAATACTCCCGGGCTGG 57.049 50.000 18.49 11.14 37.55 4.85
760 762 0.400594 ATAAATACTCCCGGGCTGGC 59.599 55.000 18.49 0.00 35.87 4.85
761 763 0.693092 TAAATACTCCCGGGCTGGCT 60.693 55.000 18.49 0.24 35.87 4.75
762 764 1.984288 AAATACTCCCGGGCTGGCTC 61.984 60.000 18.49 0.00 35.87 4.70
764 766 2.898472 ATACTCCCGGGCTGGCTCTT 62.898 60.000 18.49 0.00 35.87 2.85
766 768 2.285069 TCCCGGGCTGGCTCTTTA 60.285 61.111 18.49 0.00 35.87 1.85
767 769 1.910580 CTCCCGGGCTGGCTCTTTAA 61.911 60.000 18.49 0.00 35.87 1.52
769 771 1.313091 CCCGGGCTGGCTCTTTAAAC 61.313 60.000 8.08 0.00 35.87 2.01
770 772 1.313091 CCGGGCTGGCTCTTTAAACC 61.313 60.000 0.00 0.00 0.00 3.27
772 774 0.888619 GGGCTGGCTCTTTAAACCAC 59.111 55.000 0.00 0.00 0.00 4.16
773 775 1.616159 GGCTGGCTCTTTAAACCACA 58.384 50.000 0.00 0.00 0.00 4.17
775 777 1.069227 GCTGGCTCTTTAAACCACACG 60.069 52.381 0.00 0.00 0.00 4.49
776 778 0.948678 TGGCTCTTTAAACCACACGC 59.051 50.000 0.00 0.00 0.00 5.34
778 780 1.539827 GGCTCTTTAAACCACACGCAT 59.460 47.619 0.00 0.00 0.00 4.73
779 781 2.030274 GGCTCTTTAAACCACACGCATT 60.030 45.455 0.00 0.00 0.00 3.56
781 783 3.425193 GCTCTTTAAACCACACGCATTTG 59.575 43.478 0.00 0.00 0.00 2.32
782 784 4.606961 CTCTTTAAACCACACGCATTTGT 58.393 39.130 0.00 0.00 0.00 2.83
792 794 4.829064 ACACGCATTTGTGAACATAACT 57.171 36.364 0.24 0.00 42.55 2.24
794 796 5.587289 ACACGCATTTGTGAACATAACTTT 58.413 33.333 0.24 0.00 42.55 2.66
795 797 6.730175 ACACGCATTTGTGAACATAACTTTA 58.270 32.000 0.24 0.00 42.55 1.85
796 798 7.197017 ACACGCATTTGTGAACATAACTTTAA 58.803 30.769 0.24 0.00 42.55 1.52
799 801 8.132362 ACGCATTTGTGAACATAACTTTAAAGA 58.868 29.630 21.92 0.30 0.00 2.52
828 830 7.672983 ATATTGCCCTTATAAACACAGATCG 57.327 36.000 0.00 0.00 0.00 3.69
830 832 5.601583 TGCCCTTATAAACACAGATCGTA 57.398 39.130 0.00 0.00 0.00 3.43
831 833 6.169557 TGCCCTTATAAACACAGATCGTAT 57.830 37.500 0.00 0.00 0.00 3.06
832 834 6.220930 TGCCCTTATAAACACAGATCGTATC 58.779 40.000 0.00 0.00 0.00 2.24
833 835 6.041637 TGCCCTTATAAACACAGATCGTATCT 59.958 38.462 0.00 0.00 41.15 1.98
836 838 8.765219 CCCTTATAAACACAGATCGTATCTTTG 58.235 37.037 8.52 8.52 41.61 2.77
837 839 8.765219 CCTTATAAACACAGATCGTATCTTTGG 58.235 37.037 12.49 2.86 40.49 3.28
838 840 9.314321 CTTATAAACACAGATCGTATCTTTGGT 57.686 33.333 12.49 6.08 38.58 3.67
841 843 7.972832 AAACACAGATCGTATCTTTGGTTAA 57.027 32.000 10.57 0.00 43.17 2.01
842 844 8.561738 AAACACAGATCGTATCTTTGGTTAAT 57.438 30.769 10.57 0.00 43.17 1.40
843 845 7.772332 ACACAGATCGTATCTTTGGTTAATC 57.228 36.000 12.49 0.00 40.49 1.75
846 848 8.116753 CACAGATCGTATCTTTGGTTAATCAAC 58.883 37.037 0.00 0.00 37.58 3.18
847 849 7.822334 ACAGATCGTATCTTTGGTTAATCAACA 59.178 33.333 0.00 0.00 37.58 3.33
848 850 8.830580 CAGATCGTATCTTTGGTTAATCAACAT 58.169 33.333 0.00 0.00 37.58 2.71
849 851 8.830580 AGATCGTATCTTTGGTTAATCAACATG 58.169 33.333 0.00 0.00 35.76 3.21
851 853 6.372937 TCGTATCTTTGGTTAATCAACATGCA 59.627 34.615 0.00 0.00 36.29 3.96
855 857 5.534278 TCTTTGGTTAATCAACATGCAGTGA 59.466 36.000 0.00 0.00 36.29 3.41
858 860 4.158209 TGGTTAATCAACATGCAGTGATGG 59.842 41.667 10.19 0.00 36.29 3.51
859 861 2.953466 AATCAACATGCAGTGATGGC 57.047 45.000 10.19 0.00 31.98 4.40
860 862 1.108776 ATCAACATGCAGTGATGGCC 58.891 50.000 8.97 0.00 31.98 5.36
861 863 0.966875 TCAACATGCAGTGATGGCCC 60.967 55.000 0.00 0.00 31.98 5.80
862 864 0.968901 CAACATGCAGTGATGGCCCT 60.969 55.000 0.00 0.00 0.00 5.19
863 865 0.968901 AACATGCAGTGATGGCCCTG 60.969 55.000 0.00 0.35 0.00 4.45
878 894 6.664816 TGATGGCCCTGATTTATTTGGATATC 59.335 38.462 0.00 0.00 0.00 1.63
976 998 3.818210 TCCTCGCAAAAAGCTTTGTATGA 59.182 39.130 13.54 7.45 43.34 2.15
1092 1114 3.212685 TGTCATCAACACAACATGCTCA 58.787 40.909 0.00 0.00 31.20 4.26
1282 1304 4.084013 ACGCTTGCATCGGTTATTATAAGC 60.084 41.667 12.49 4.26 36.77 3.09
1356 1378 7.115520 CGAGATGCTGAACTGATATACGAAAAT 59.884 37.037 0.00 0.00 0.00 1.82
1381 1403 0.178932 TCAGGCCTCATATACGCCCT 60.179 55.000 0.00 0.00 44.13 5.19
1398 1420 3.189287 CGCCCTTAGATTGTGATATTGCC 59.811 47.826 0.00 0.00 0.00 4.52
1569 1591 9.421399 TCTATCATGTGAATAAAGAGGTGTCTA 57.579 33.333 0.00 0.00 30.45 2.59
1766 1796 4.392940 ACTCTTGTCCTCCAAAACATGAG 58.607 43.478 0.00 13.61 45.77 2.90
1786 1816 2.253414 GATCACGCGTTTCTTGCCCC 62.253 60.000 10.22 0.00 0.00 5.80
1976 2006 6.890268 ACTGAATGTAGTAGGATAGTGTGTCA 59.110 38.462 0.00 0.00 0.00 3.58
1985 2015 1.482593 GATAGTGTGTCAGGAGGTGGG 59.517 57.143 0.00 0.00 0.00 4.61
2072 2102 3.065306 CCCAACTGTCCTGCCGTA 58.935 61.111 0.00 0.00 0.00 4.02
2108 2138 1.903877 CGAGGATGGCTGGAACCTGT 61.904 60.000 0.00 0.00 32.53 4.00
2149 2179 3.173240 GAACTCGCGCTCGTCACC 61.173 66.667 5.56 0.00 36.96 4.02
2179 2209 2.287915 CCTCGATTTCATTACGGGCTTG 59.712 50.000 0.00 0.00 0.00 4.01
2221 2251 1.153524 TTGTTGCTGGGCAGGATGT 59.846 52.632 0.00 0.00 40.61 3.06
2222 2252 0.403655 TTGTTGCTGGGCAGGATGTA 59.596 50.000 0.00 0.00 40.61 2.29
2223 2253 0.625316 TGTTGCTGGGCAGGATGTAT 59.375 50.000 0.00 0.00 40.61 2.29
2224 2254 1.027357 GTTGCTGGGCAGGATGTATG 58.973 55.000 0.00 0.00 40.61 2.39
2225 2255 0.918258 TTGCTGGGCAGGATGTATGA 59.082 50.000 0.00 0.00 40.61 2.15
2254 2284 0.317160 ACGAAGCCATCACTCGTTCA 59.683 50.000 0.00 0.00 32.90 3.18
2255 2285 1.270094 ACGAAGCCATCACTCGTTCAA 60.270 47.619 0.00 0.00 32.90 2.69
2376 3077 4.128580 CCCCGAGGCCCAATTTTT 57.871 55.556 0.00 0.00 0.00 1.94
2377 3078 3.291497 CCCCGAGGCCCAATTTTTA 57.709 52.632 0.00 0.00 0.00 1.52
2378 3079 0.821517 CCCCGAGGCCCAATTTTTAC 59.178 55.000 0.00 0.00 0.00 2.01
2380 3081 0.179148 CCGAGGCCCAATTTTTACGC 60.179 55.000 0.00 0.00 0.00 4.42
2385 3086 1.887301 CCCAATTTTTACGCCGGCT 59.113 52.632 26.68 14.27 0.00 5.52
2386 3087 0.179148 CCCAATTTTTACGCCGGCTC 60.179 55.000 26.68 0.00 0.00 4.70
2387 3088 0.523966 CCAATTTTTACGCCGGCTCA 59.476 50.000 26.68 9.08 0.00 4.26
2388 3089 1.613270 CAATTTTTACGCCGGCTCAC 58.387 50.000 26.68 0.00 0.00 3.51
2389 3090 0.524414 AATTTTTACGCCGGCTCACC 59.476 50.000 26.68 0.00 0.00 4.02
2390 3091 1.310216 ATTTTTACGCCGGCTCACCC 61.310 55.000 26.68 0.00 0.00 4.61
2406 3107 3.873781 CCCTCAGGTGGCGATTTTA 57.126 52.632 0.00 0.00 0.00 1.52
2408 3109 1.668419 CCTCAGGTGGCGATTTTAGG 58.332 55.000 0.00 0.00 0.00 2.69
2409 3110 1.017387 CTCAGGTGGCGATTTTAGGC 58.983 55.000 0.00 0.00 0.00 3.93
2417 3118 1.448497 CGATTTTAGGCGCCCCCTA 59.552 57.895 26.15 6.25 44.08 3.53
2418 3119 0.036306 CGATTTTAGGCGCCCCCTAT 59.964 55.000 26.15 12.38 45.53 2.57
2419 3120 1.276989 CGATTTTAGGCGCCCCCTATA 59.723 52.381 26.15 5.33 45.53 1.31
2421 3122 1.061546 TTTTAGGCGCCCCCTATAGG 58.938 55.000 26.15 12.27 45.53 2.57
2431 3132 3.563512 CCTATAGGGCCAACCGCT 58.436 61.111 11.33 0.00 46.96 5.52
2432 3133 1.071471 CCTATAGGGCCAACCGCTG 59.929 63.158 11.33 0.00 46.96 5.18
2441 3142 3.805267 CAACCGCTGGAGATGCTC 58.195 61.111 1.50 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.395826 TTGGGGGACGGTTGCTTTTG 61.396 55.000 0.00 0.00 0.00 2.44
3 4 1.075896 TTGGGGGACGGTTGCTTTT 60.076 52.632 0.00 0.00 0.00 2.27
4 5 1.830847 GTTGGGGGACGGTTGCTTT 60.831 57.895 0.00 0.00 0.00 3.51
5 6 2.203437 GTTGGGGGACGGTTGCTT 60.203 61.111 0.00 0.00 0.00 3.91
7 8 2.983592 CAGTTGGGGGACGGTTGC 60.984 66.667 0.00 0.00 0.00 4.17
8 9 1.302511 CTCAGTTGGGGGACGGTTG 60.303 63.158 0.00 0.00 0.00 3.77
9 10 1.460689 TCTCAGTTGGGGGACGGTT 60.461 57.895 0.00 0.00 0.00 4.44
10 11 1.913762 CTCTCAGTTGGGGGACGGT 60.914 63.158 0.00 0.00 0.00 4.83
11 12 2.982130 CTCTCAGTTGGGGGACGG 59.018 66.667 0.00 0.00 0.00 4.79
12 13 2.266055 GCTCTCAGTTGGGGGACG 59.734 66.667 0.00 0.00 0.00 4.79
14 15 3.811702 CTGCTCTCAGTTGGGGGA 58.188 61.111 0.00 0.00 35.61 4.81
22 23 1.538950 GGAAAGGCAAACTGCTCTCAG 59.461 52.381 0.00 0.00 44.28 3.35
23 24 1.133823 TGGAAAGGCAAACTGCTCTCA 60.134 47.619 0.00 0.00 44.28 3.27
26 27 1.683385 AGTTGGAAAGGCAAACTGCTC 59.317 47.619 0.00 0.00 44.28 4.26
32 33 3.181470 GGTTAAGCAGTTGGAAAGGCAAA 60.181 43.478 0.00 0.00 30.36 3.68
34 35 1.960689 GGTTAAGCAGTTGGAAAGGCA 59.039 47.619 0.00 0.00 30.36 4.75
35 36 1.068541 CGGTTAAGCAGTTGGAAAGGC 60.069 52.381 5.38 0.00 0.00 4.35
37 38 3.982576 AACGGTTAAGCAGTTGGAAAG 57.017 42.857 5.38 0.00 34.32 2.62
38 39 3.949113 AGAAACGGTTAAGCAGTTGGAAA 59.051 39.130 13.02 0.00 35.73 3.13
39 40 3.547746 AGAAACGGTTAAGCAGTTGGAA 58.452 40.909 13.02 0.00 35.73 3.53
40 41 3.135994 GAGAAACGGTTAAGCAGTTGGA 58.864 45.455 13.02 0.00 35.73 3.53
41 42 3.139077 AGAGAAACGGTTAAGCAGTTGG 58.861 45.455 13.02 0.00 35.73 3.77
42 43 5.118817 GTCTAGAGAAACGGTTAAGCAGTTG 59.881 44.000 13.02 0.00 35.73 3.16
43 44 5.228665 GTCTAGAGAAACGGTTAAGCAGTT 58.771 41.667 5.38 7.18 37.09 3.16
45 46 3.852536 CGTCTAGAGAAACGGTTAAGCAG 59.147 47.826 5.38 0.52 35.32 4.24
47 48 2.597748 GCGTCTAGAGAAACGGTTAAGC 59.402 50.000 0.00 0.00 39.24 3.09
48 49 4.094090 AGCGTCTAGAGAAACGGTTAAG 57.906 45.455 0.00 0.00 46.28 1.85
53 54 1.064357 GAGGAGCGTCTAGAGAAACGG 59.936 57.143 0.00 0.00 39.24 4.44
54 55 2.011222 AGAGGAGCGTCTAGAGAAACG 58.989 52.381 0.00 0.00 41.68 3.60
55 56 3.940221 TGTAGAGGAGCGTCTAGAGAAAC 59.060 47.826 0.00 0.00 29.38 2.78
56 57 4.217836 TGTAGAGGAGCGTCTAGAGAAA 57.782 45.455 0.00 0.00 29.38 2.52
57 58 3.908643 TGTAGAGGAGCGTCTAGAGAA 57.091 47.619 0.00 0.00 29.38 2.87
58 59 3.734463 CATGTAGAGGAGCGTCTAGAGA 58.266 50.000 0.00 0.00 29.38 3.10
59 60 2.225491 GCATGTAGAGGAGCGTCTAGAG 59.775 54.545 0.00 0.00 29.38 2.43
60 61 2.158740 AGCATGTAGAGGAGCGTCTAGA 60.159 50.000 0.00 0.00 29.38 2.43
61 62 2.226330 AGCATGTAGAGGAGCGTCTAG 58.774 52.381 0.00 0.00 29.38 2.43
62 63 2.350057 AGCATGTAGAGGAGCGTCTA 57.650 50.000 0.00 0.00 0.00 2.59
63 64 1.407258 GAAGCATGTAGAGGAGCGTCT 59.593 52.381 0.00 0.00 33.65 4.18
64 65 1.537135 GGAAGCATGTAGAGGAGCGTC 60.537 57.143 0.00 0.00 35.28 5.19
65 66 0.461961 GGAAGCATGTAGAGGAGCGT 59.538 55.000 0.00 0.00 0.00 5.07
66 67 0.461548 TGGAAGCATGTAGAGGAGCG 59.538 55.000 0.00 0.00 0.00 5.03
67 68 1.484240 AGTGGAAGCATGTAGAGGAGC 59.516 52.381 0.00 0.00 0.00 4.70
70 71 2.741228 GCAGAGTGGAAGCATGTAGAGG 60.741 54.545 0.00 0.00 0.00 3.69
71 72 2.093816 TGCAGAGTGGAAGCATGTAGAG 60.094 50.000 0.00 0.00 32.55 2.43
72 73 1.901833 TGCAGAGTGGAAGCATGTAGA 59.098 47.619 0.00 0.00 32.55 2.59
73 74 2.391616 TGCAGAGTGGAAGCATGTAG 57.608 50.000 0.00 0.00 32.55 2.74
75 76 1.816835 CATTGCAGAGTGGAAGCATGT 59.183 47.619 0.00 0.00 38.19 3.21
77 78 1.272313 ACCATTGCAGAGTGGAAGCAT 60.272 47.619 18.29 0.00 38.19 3.79
79 80 0.524862 CACCATTGCAGAGTGGAAGC 59.475 55.000 18.29 0.00 38.86 3.86
81 82 1.271543 CCTCACCATTGCAGAGTGGAA 60.272 52.381 18.29 7.73 38.86 3.53
83 84 1.310933 GCCTCACCATTGCAGAGTGG 61.311 60.000 11.88 11.88 41.35 4.00
85 86 1.376424 CGCCTCACCATTGCAGAGT 60.376 57.895 0.00 0.00 0.00 3.24
86 87 2.758089 GCGCCTCACCATTGCAGAG 61.758 63.158 0.00 0.00 0.00 3.35
88 89 3.818787 GGCGCCTCACCATTGCAG 61.819 66.667 22.15 0.00 0.00 4.41
91 92 3.499737 GTCGGCGCCTCACCATTG 61.500 66.667 26.68 6.06 0.00 2.82
93 94 3.329542 ATTGTCGGCGCCTCACCAT 62.330 57.895 26.68 14.90 0.00 3.55
96 97 1.369091 ATTCATTGTCGGCGCCTCAC 61.369 55.000 26.68 20.90 0.00 3.51
97 98 1.078497 ATTCATTGTCGGCGCCTCA 60.078 52.632 26.68 20.28 0.00 3.86
99 100 2.173669 CGATTCATTGTCGGCGCCT 61.174 57.895 26.68 0.86 35.55 5.52
105 106 5.281727 TCTGAGAATACCGATTCATTGTCG 58.718 41.667 0.87 0.00 43.51 4.35
106 107 8.994429 ATATCTGAGAATACCGATTCATTGTC 57.006 34.615 0.00 0.00 43.51 3.18
107 108 9.784531 AAATATCTGAGAATACCGATTCATTGT 57.215 29.630 0.00 0.00 43.51 2.71
114 115 8.198109 CCCGATTAAATATCTGAGAATACCGAT 58.802 37.037 0.00 0.00 0.00 4.18
116 117 7.544622 TCCCGATTAAATATCTGAGAATACCG 58.455 38.462 0.00 0.00 0.00 4.02
120 121 9.236006 CCAATTCCCGATTAAATATCTGAGAAT 57.764 33.333 0.00 0.00 0.00 2.40
122 123 7.878127 GTCCAATTCCCGATTAAATATCTGAGA 59.122 37.037 0.00 0.00 0.00 3.27
123 124 7.661437 TGTCCAATTCCCGATTAAATATCTGAG 59.339 37.037 0.00 0.00 0.00 3.35
124 125 7.513856 TGTCCAATTCCCGATTAAATATCTGA 58.486 34.615 0.00 0.00 0.00 3.27
125 126 7.744087 TGTCCAATTCCCGATTAAATATCTG 57.256 36.000 0.00 0.00 0.00 2.90
126 127 7.944554 ACATGTCCAATTCCCGATTAAATATCT 59.055 33.333 0.00 0.00 0.00 1.98
127 128 8.110860 ACATGTCCAATTCCCGATTAAATATC 57.889 34.615 0.00 0.00 0.00 1.63
129 130 7.171848 CGTACATGTCCAATTCCCGATTAAATA 59.828 37.037 0.00 0.00 0.00 1.40
130 131 6.017440 CGTACATGTCCAATTCCCGATTAAAT 60.017 38.462 0.00 0.00 0.00 1.40
131 132 5.294799 CGTACATGTCCAATTCCCGATTAAA 59.705 40.000 0.00 0.00 0.00 1.52
132 133 4.812091 CGTACATGTCCAATTCCCGATTAA 59.188 41.667 0.00 0.00 0.00 1.40
133 134 4.373527 CGTACATGTCCAATTCCCGATTA 58.626 43.478 0.00 0.00 0.00 1.75
135 136 2.833794 CGTACATGTCCAATTCCCGAT 58.166 47.619 0.00 0.00 0.00 4.18
136 137 1.741055 GCGTACATGTCCAATTCCCGA 60.741 52.381 0.00 0.00 0.00 5.14
137 138 0.655733 GCGTACATGTCCAATTCCCG 59.344 55.000 0.00 0.00 0.00 5.14
138 139 1.745232 TGCGTACATGTCCAATTCCC 58.255 50.000 0.00 0.00 0.00 3.97
139 140 2.159435 GGTTGCGTACATGTCCAATTCC 60.159 50.000 0.00 0.18 0.00 3.01
140 141 2.486203 TGGTTGCGTACATGTCCAATTC 59.514 45.455 0.00 3.09 0.00 2.17
141 142 2.509569 TGGTTGCGTACATGTCCAATT 58.490 42.857 0.00 0.00 0.00 2.32
142 143 2.192664 TGGTTGCGTACATGTCCAAT 57.807 45.000 0.00 0.00 0.00 3.16
143 144 1.968704 TTGGTTGCGTACATGTCCAA 58.031 45.000 0.00 5.93 32.71 3.53
144 145 1.968704 TTTGGTTGCGTACATGTCCA 58.031 45.000 0.00 0.00 0.00 4.02
145 146 3.064820 CCTATTTGGTTGCGTACATGTCC 59.935 47.826 0.00 0.00 0.00 4.02
146 147 4.273005 CCTATTTGGTTGCGTACATGTC 57.727 45.455 0.00 0.00 0.00 3.06
159 160 3.502211 GCCGATTATGGTGACCTATTTGG 59.498 47.826 2.11 4.46 42.93 3.28
161 162 3.137544 TGGCCGATTATGGTGACCTATTT 59.862 43.478 2.11 0.00 0.00 1.40
163 164 2.038557 GTGGCCGATTATGGTGACCTAT 59.961 50.000 2.11 0.00 0.00 2.57
164 165 1.414919 GTGGCCGATTATGGTGACCTA 59.585 52.381 2.11 0.00 0.00 3.08
165 166 0.180406 GTGGCCGATTATGGTGACCT 59.820 55.000 2.11 0.00 0.00 3.85
166 167 0.818040 GGTGGCCGATTATGGTGACC 60.818 60.000 0.00 0.00 0.00 4.02
167 168 2.702847 GGTGGCCGATTATGGTGAC 58.297 57.895 0.00 0.00 0.00 3.67
181 182 0.036010 AGAAGTCATTGAGGCGGTGG 60.036 55.000 0.00 0.00 0.00 4.61
182 183 1.363744 GAGAAGTCATTGAGGCGGTG 58.636 55.000 0.00 0.00 0.00 4.94
183 184 0.250513 GGAGAAGTCATTGAGGCGGT 59.749 55.000 0.00 0.00 0.00 5.68
185 186 2.099141 TTGGAGAAGTCATTGAGGCG 57.901 50.000 0.00 0.00 0.00 5.52
186 187 2.163211 GCTTTGGAGAAGTCATTGAGGC 59.837 50.000 0.00 0.00 0.00 4.70
187 188 3.415212 TGCTTTGGAGAAGTCATTGAGG 58.585 45.455 0.00 0.00 0.00 3.86
188 189 4.321718 TCTGCTTTGGAGAAGTCATTGAG 58.678 43.478 0.00 0.00 29.82 3.02
189 190 4.356405 TCTGCTTTGGAGAAGTCATTGA 57.644 40.909 0.00 0.00 29.82 2.57
190 191 4.612259 CGTTCTGCTTTGGAGAAGTCATTG 60.612 45.833 1.87 0.00 30.01 2.82
191 192 3.499918 CGTTCTGCTTTGGAGAAGTCATT 59.500 43.478 1.87 0.00 30.01 2.57
192 193 3.070018 CGTTCTGCTTTGGAGAAGTCAT 58.930 45.455 1.87 0.00 30.01 3.06
193 194 2.102420 TCGTTCTGCTTTGGAGAAGTCA 59.898 45.455 1.87 0.00 30.01 3.41
195 196 2.910688 TCGTTCTGCTTTGGAGAAGT 57.089 45.000 1.87 0.00 30.01 3.01
196 197 3.748048 TGAATCGTTCTGCTTTGGAGAAG 59.252 43.478 1.87 0.00 30.01 2.85
197 198 3.498397 GTGAATCGTTCTGCTTTGGAGAA 59.502 43.478 0.00 0.00 0.00 2.87
198 199 3.067106 GTGAATCGTTCTGCTTTGGAGA 58.933 45.455 0.00 0.00 0.00 3.71
199 200 3.070018 AGTGAATCGTTCTGCTTTGGAG 58.930 45.455 0.00 0.00 0.00 3.86
200 201 3.126001 AGTGAATCGTTCTGCTTTGGA 57.874 42.857 0.00 0.00 0.00 3.53
201 202 3.904136 AAGTGAATCGTTCTGCTTTGG 57.096 42.857 0.00 0.00 0.00 3.28
202 203 6.306356 CCATAAAAGTGAATCGTTCTGCTTTG 59.694 38.462 14.39 8.44 36.50 2.77
203 204 6.206634 TCCATAAAAGTGAATCGTTCTGCTTT 59.793 34.615 11.10 11.10 37.26 3.51
204 205 5.705441 TCCATAAAAGTGAATCGTTCTGCTT 59.295 36.000 0.00 0.00 0.00 3.91
205 206 5.245531 TCCATAAAAGTGAATCGTTCTGCT 58.754 37.500 0.00 0.00 0.00 4.24
206 207 5.545658 TCCATAAAAGTGAATCGTTCTGC 57.454 39.130 0.00 0.00 0.00 4.26
207 208 7.133891 ACTTCCATAAAAGTGAATCGTTCTG 57.866 36.000 0.00 0.00 38.06 3.02
220 221 9.983024 TGGGTCTCAAAATATACTTCCATAAAA 57.017 29.630 0.00 0.00 0.00 1.52
221 222 9.627123 CTGGGTCTCAAAATATACTTCCATAAA 57.373 33.333 0.00 0.00 0.00 1.40
222 223 7.719633 GCTGGGTCTCAAAATATACTTCCATAA 59.280 37.037 0.00 0.00 0.00 1.90
223 224 7.147391 TGCTGGGTCTCAAAATATACTTCCATA 60.147 37.037 0.00 0.00 0.00 2.74
224 225 6.064717 GCTGGGTCTCAAAATATACTTCCAT 58.935 40.000 0.00 0.00 0.00 3.41
225 226 5.045213 TGCTGGGTCTCAAAATATACTTCCA 60.045 40.000 0.00 0.00 0.00 3.53
226 227 5.437060 TGCTGGGTCTCAAAATATACTTCC 58.563 41.667 0.00 0.00 0.00 3.46
227 228 7.573968 AATGCTGGGTCTCAAAATATACTTC 57.426 36.000 0.00 0.00 0.00 3.01
228 229 7.631377 GCAAATGCTGGGTCTCAAAATATACTT 60.631 37.037 0.00 0.00 38.21 2.24
229 230 6.183360 GCAAATGCTGGGTCTCAAAATATACT 60.183 38.462 0.00 0.00 38.21 2.12
230 231 5.979517 GCAAATGCTGGGTCTCAAAATATAC 59.020 40.000 0.00 0.00 38.21 1.47
231 232 6.147864 GCAAATGCTGGGTCTCAAAATATA 57.852 37.500 0.00 0.00 38.21 0.86
232 233 5.014808 GCAAATGCTGGGTCTCAAAATAT 57.985 39.130 0.00 0.00 38.21 1.28
233 234 4.454728 GCAAATGCTGGGTCTCAAAATA 57.545 40.909 0.00 0.00 38.21 1.40
234 235 3.323751 GCAAATGCTGGGTCTCAAAAT 57.676 42.857 0.00 0.00 38.21 1.82
235 236 2.818130 GCAAATGCTGGGTCTCAAAA 57.182 45.000 0.00 0.00 38.21 2.44
248 249 2.154389 GCTTTCAGCGTTTGAGCAAATG 59.846 45.455 10.10 10.10 39.61 2.32
249 250 2.223782 TGCTTTCAGCGTTTGAGCAAAT 60.224 40.909 0.00 0.00 46.26 2.32
250 251 1.133982 TGCTTTCAGCGTTTGAGCAAA 59.866 42.857 0.00 0.00 46.26 3.68
251 252 0.737804 TGCTTTCAGCGTTTGAGCAA 59.262 45.000 0.00 0.00 46.26 3.91
252 253 0.737804 TTGCTTTCAGCGTTTGAGCA 59.262 45.000 0.00 0.00 46.26 4.26
253 254 1.002468 TCTTGCTTTCAGCGTTTGAGC 60.002 47.619 0.00 0.00 46.26 4.26
254 255 2.289002 ACTCTTGCTTTCAGCGTTTGAG 59.711 45.455 0.00 0.00 46.26 3.02
255 256 2.288666 ACTCTTGCTTTCAGCGTTTGA 58.711 42.857 0.00 0.00 46.26 2.69
256 257 2.763249 ACTCTTGCTTTCAGCGTTTG 57.237 45.000 0.00 0.00 46.26 2.93
257 258 3.128589 TGAAACTCTTGCTTTCAGCGTTT 59.871 39.130 0.00 0.80 46.26 3.60
258 259 2.682856 TGAAACTCTTGCTTTCAGCGTT 59.317 40.909 0.00 0.00 46.26 4.84
259 260 2.288666 TGAAACTCTTGCTTTCAGCGT 58.711 42.857 0.00 0.00 46.26 5.07
260 261 2.913613 CTGAAACTCTTGCTTTCAGCG 58.086 47.619 11.15 0.00 46.26 5.18
263 264 5.184864 TCAAAACCTGAAACTCTTGCTTTCA 59.815 36.000 0.00 0.00 36.44 2.69
264 265 5.650543 TCAAAACCTGAAACTCTTGCTTTC 58.349 37.500 0.00 0.00 0.00 2.62
265 266 5.654497 CTCAAAACCTGAAACTCTTGCTTT 58.346 37.500 0.00 0.00 32.17 3.51
266 267 4.440663 GCTCAAAACCTGAAACTCTTGCTT 60.441 41.667 0.00 0.00 32.17 3.91
267 268 3.067320 GCTCAAAACCTGAAACTCTTGCT 59.933 43.478 0.00 0.00 32.17 3.91
268 269 3.375642 GCTCAAAACCTGAAACTCTTGC 58.624 45.455 0.00 0.00 32.17 4.01
269 270 3.633986 AGGCTCAAAACCTGAAACTCTTG 59.366 43.478 0.00 0.00 35.72 3.02
270 271 3.903467 AGGCTCAAAACCTGAAACTCTT 58.097 40.909 0.00 0.00 35.72 2.85
271 272 3.584733 AGGCTCAAAACCTGAAACTCT 57.415 42.857 0.00 0.00 35.72 3.24
272 273 3.381590 ACAAGGCTCAAAACCTGAAACTC 59.618 43.478 0.00 0.00 37.67 3.01
273 274 3.365472 ACAAGGCTCAAAACCTGAAACT 58.635 40.909 0.00 0.00 37.67 2.66
274 275 3.490933 GGACAAGGCTCAAAACCTGAAAC 60.491 47.826 0.00 0.00 37.67 2.78
275 276 2.693074 GGACAAGGCTCAAAACCTGAAA 59.307 45.455 0.00 0.00 37.67 2.69
276 277 2.306847 GGACAAGGCTCAAAACCTGAA 58.693 47.619 0.00 0.00 37.67 3.02
277 278 1.214175 TGGACAAGGCTCAAAACCTGA 59.786 47.619 0.00 0.00 37.67 3.86
278 279 1.610522 CTGGACAAGGCTCAAAACCTG 59.389 52.381 0.00 0.00 37.67 4.00
279 280 1.494721 TCTGGACAAGGCTCAAAACCT 59.505 47.619 0.00 0.00 40.02 3.50
280 281 1.981256 TCTGGACAAGGCTCAAAACC 58.019 50.000 0.00 0.00 0.00 3.27
281 282 3.149196 TGATCTGGACAAGGCTCAAAAC 58.851 45.455 0.00 0.00 0.00 2.43
282 283 3.507162 TGATCTGGACAAGGCTCAAAA 57.493 42.857 0.00 0.00 0.00 2.44
283 284 3.245016 ACATGATCTGGACAAGGCTCAAA 60.245 43.478 0.00 0.00 0.00 2.69
284 285 2.306805 ACATGATCTGGACAAGGCTCAA 59.693 45.455 0.00 0.00 0.00 3.02
285 286 1.911357 ACATGATCTGGACAAGGCTCA 59.089 47.619 0.00 0.00 0.00 4.26
286 287 2.706339 ACATGATCTGGACAAGGCTC 57.294 50.000 0.00 0.00 0.00 4.70
287 288 2.356535 GGAACATGATCTGGACAAGGCT 60.357 50.000 0.00 0.00 0.00 4.58
288 289 2.019984 GGAACATGATCTGGACAAGGC 58.980 52.381 0.00 0.00 0.00 4.35
289 290 3.354948 TGGAACATGATCTGGACAAGG 57.645 47.619 0.00 0.00 0.00 3.61
299 300 9.573133 GAAACGATTCTTTTTATGGAACATGAT 57.427 29.630 0.00 0.00 36.32 2.45
300 301 8.572185 TGAAACGATTCTTTTTATGGAACATGA 58.428 29.630 0.00 0.00 38.84 3.07
301 302 8.741101 TGAAACGATTCTTTTTATGGAACATG 57.259 30.769 6.98 0.00 38.84 3.21
302 303 9.573133 GATGAAACGATTCTTTTTATGGAACAT 57.427 29.630 6.98 0.00 38.84 2.71
303 304 8.026607 GGATGAAACGATTCTTTTTATGGAACA 58.973 33.333 6.98 0.00 38.66 3.18
304 305 8.026607 TGGATGAAACGATTCTTTTTATGGAAC 58.973 33.333 6.98 0.00 36.48 3.62
305 306 8.116651 TGGATGAAACGATTCTTTTTATGGAA 57.883 30.769 6.98 0.00 36.48 3.53
306 307 7.695480 TGGATGAAACGATTCTTTTTATGGA 57.305 32.000 6.98 0.00 36.48 3.41
307 308 8.931385 AATGGATGAAACGATTCTTTTTATGG 57.069 30.769 6.98 0.00 36.48 2.74
308 309 9.571810 TGAATGGATGAAACGATTCTTTTTATG 57.428 29.630 6.98 0.00 36.47 1.90
309 310 9.793252 CTGAATGGATGAAACGATTCTTTTTAT 57.207 29.630 6.98 0.00 36.47 1.40
310 311 8.792633 ACTGAATGGATGAAACGATTCTTTTTA 58.207 29.630 6.98 0.00 36.47 1.52
311 312 7.661040 ACTGAATGGATGAAACGATTCTTTTT 58.339 30.769 6.98 0.00 36.47 1.94
312 313 7.219484 ACTGAATGGATGAAACGATTCTTTT 57.781 32.000 6.98 0.00 36.47 2.27
313 314 6.824305 ACTGAATGGATGAAACGATTCTTT 57.176 33.333 6.98 0.00 36.47 2.52
314 315 7.921786 TTACTGAATGGATGAAACGATTCTT 57.078 32.000 6.98 0.07 36.47 2.52
315 316 9.613428 TTATTACTGAATGGATGAAACGATTCT 57.387 29.630 6.98 0.00 36.47 2.40
316 317 9.869844 CTTATTACTGAATGGATGAAACGATTC 57.130 33.333 0.00 0.00 36.20 2.52
317 318 9.396022 ACTTATTACTGAATGGATGAAACGATT 57.604 29.630 0.00 0.00 0.00 3.34
318 319 8.830580 CACTTATTACTGAATGGATGAAACGAT 58.169 33.333 0.00 0.00 0.00 3.73
319 320 7.201609 GCACTTATTACTGAATGGATGAAACGA 60.202 37.037 0.00 0.00 0.00 3.85
320 321 6.907212 GCACTTATTACTGAATGGATGAAACG 59.093 38.462 0.00 0.00 0.00 3.60
321 322 7.761409 TGCACTTATTACTGAATGGATGAAAC 58.239 34.615 0.00 0.00 0.00 2.78
322 323 7.936496 TGCACTTATTACTGAATGGATGAAA 57.064 32.000 0.00 0.00 0.00 2.69
323 324 8.523915 AATGCACTTATTACTGAATGGATGAA 57.476 30.769 0.00 0.00 0.00 2.57
324 325 8.523915 AAATGCACTTATTACTGAATGGATGA 57.476 30.769 0.00 0.00 0.00 2.92
325 326 9.241317 GAAAATGCACTTATTACTGAATGGATG 57.759 33.333 0.00 0.00 0.00 3.51
326 327 8.970020 TGAAAATGCACTTATTACTGAATGGAT 58.030 29.630 0.00 0.00 0.00 3.41
327 328 8.347004 TGAAAATGCACTTATTACTGAATGGA 57.653 30.769 0.00 0.00 0.00 3.41
328 329 9.590451 AATGAAAATGCACTTATTACTGAATGG 57.410 29.630 0.00 0.00 0.00 3.16
330 331 9.507280 CGAATGAAAATGCACTTATTACTGAAT 57.493 29.630 0.00 0.00 0.00 2.57
331 332 8.511321 ACGAATGAAAATGCACTTATTACTGAA 58.489 29.630 0.00 0.00 0.00 3.02
332 333 8.039603 ACGAATGAAAATGCACTTATTACTGA 57.960 30.769 0.00 0.00 0.00 3.41
333 334 8.673626 AACGAATGAAAATGCACTTATTACTG 57.326 30.769 0.00 0.00 0.00 2.74
334 335 9.341899 GAAACGAATGAAAATGCACTTATTACT 57.658 29.630 0.00 0.00 0.00 2.24
335 336 9.341899 AGAAACGAATGAAAATGCACTTATTAC 57.658 29.630 0.00 0.00 0.00 1.89
336 337 9.906660 AAGAAACGAATGAAAATGCACTTATTA 57.093 25.926 0.00 0.00 0.00 0.98
337 338 8.816640 AAGAAACGAATGAAAATGCACTTATT 57.183 26.923 0.00 0.00 0.00 1.40
338 339 8.816640 AAAGAAACGAATGAAAATGCACTTAT 57.183 26.923 0.00 0.00 0.00 1.73
339 340 9.737427 TTAAAGAAACGAATGAAAATGCACTTA 57.263 25.926 0.00 0.00 0.00 2.24
384 385 6.283544 TGAATTATTTTGCTGGCAGATCAA 57.716 33.333 20.86 11.16 0.00 2.57
458 459 8.693120 ATTACATCGTTACAAGAGGAGAGATA 57.307 34.615 0.00 0.00 0.00 1.98
479 480 6.759497 ACAATAAGCCCAAGTTCTGATTAC 57.241 37.500 0.00 0.00 0.00 1.89
487 488 6.068670 AGTAGTGAAACAATAAGCCCAAGTT 58.931 36.000 0.00 0.00 41.43 2.66
491 492 5.007682 GGAAGTAGTGAAACAATAAGCCCA 58.992 41.667 0.00 0.00 41.43 5.36
572 574 6.854496 ACACGTGACACAACAAAGTAATAT 57.146 33.333 25.01 0.00 0.00 1.28
573 575 6.665474 AACACGTGACACAACAAAGTAATA 57.335 33.333 25.01 0.00 0.00 0.98
574 576 5.554822 AACACGTGACACAACAAAGTAAT 57.445 34.783 25.01 0.00 0.00 1.89
575 577 5.359716 AAACACGTGACACAACAAAGTAA 57.640 34.783 25.01 0.00 0.00 2.24
618 620 3.555139 CGCATCTTTCTTCTGTGAGGATC 59.445 47.826 0.00 0.00 0.00 3.36
619 621 3.196469 TCGCATCTTTCTTCTGTGAGGAT 59.804 43.478 0.00 0.00 0.00 3.24
620 622 2.562738 TCGCATCTTTCTTCTGTGAGGA 59.437 45.455 0.00 0.00 0.00 3.71
621 623 2.670414 GTCGCATCTTTCTTCTGTGAGG 59.330 50.000 0.00 0.00 30.66 3.86
622 624 3.583806 AGTCGCATCTTTCTTCTGTGAG 58.416 45.455 0.00 0.00 30.66 3.51
623 625 3.667497 AGTCGCATCTTTCTTCTGTGA 57.333 42.857 0.00 0.00 0.00 3.58
624 626 4.739046 AAAGTCGCATCTTTCTTCTGTG 57.261 40.909 0.00 0.00 33.05 3.66
625 627 5.757850 AAAAAGTCGCATCTTTCTTCTGT 57.242 34.783 4.06 0.00 36.75 3.41
649 651 8.889717 CGTATCTTTGGTTTATTAATGACCAGT 58.110 33.333 18.95 12.37 43.72 4.00
650 652 9.104965 TCGTATCTTTGGTTTATTAATGACCAG 57.895 33.333 18.95 12.38 43.72 4.00
651 653 9.621629 ATCGTATCTTTGGTTTATTAATGACCA 57.378 29.630 17.01 17.01 41.46 4.02
663 665 6.433093 ACAAAAGGCTTATCGTATCTTTGGTT 59.567 34.615 0.00 0.00 30.10 3.67
696 698 6.624423 TGCATGATTCTCTTTCCTTTTTAGC 58.376 36.000 0.00 0.00 0.00 3.09
738 740 3.146847 CCAGCCCGGGAGTATTTATTTC 58.853 50.000 29.31 0.36 0.00 2.17
748 750 1.910580 TTAAAGAGCCAGCCCGGGAG 61.911 60.000 29.31 16.35 34.06 4.30
749 751 1.493854 TTTAAAGAGCCAGCCCGGGA 61.494 55.000 29.31 0.00 34.06 5.14
750 752 1.001393 TTTAAAGAGCCAGCCCGGG 60.001 57.895 19.09 19.09 34.06 5.73
751 753 1.313091 GGTTTAAAGAGCCAGCCCGG 61.313 60.000 0.00 0.00 38.11 5.73
753 755 0.888619 GTGGTTTAAAGAGCCAGCCC 59.111 55.000 0.00 0.00 39.54 5.19
754 756 1.269723 GTGTGGTTTAAAGAGCCAGCC 59.730 52.381 0.00 0.00 39.54 4.85
755 757 1.069227 CGTGTGGTTTAAAGAGCCAGC 60.069 52.381 0.00 0.00 39.54 4.85
757 759 0.948678 GCGTGTGGTTTAAAGAGCCA 59.051 50.000 0.00 0.00 36.12 4.75
758 760 0.948678 TGCGTGTGGTTTAAAGAGCC 59.051 50.000 0.00 0.00 0.00 4.70
759 761 2.989422 ATGCGTGTGGTTTAAAGAGC 57.011 45.000 0.00 0.00 0.00 4.09
760 762 4.440758 CACAAATGCGTGTGGTTTAAAGAG 59.559 41.667 0.13 0.00 44.29 2.85
761 763 4.355437 CACAAATGCGTGTGGTTTAAAGA 58.645 39.130 0.13 0.00 44.29 2.52
762 764 4.690731 CACAAATGCGTGTGGTTTAAAG 57.309 40.909 0.13 0.00 44.29 1.85
772 774 7.616103 TTAAAGTTATGTTCACAAATGCGTG 57.384 32.000 0.00 0.00 38.29 5.34
773 775 8.132362 TCTTTAAAGTTATGTTCACAAATGCGT 58.868 29.630 14.74 0.00 0.00 5.24
802 804 8.567948 CGATCTGTGTTTATAAGGGCAATATTT 58.432 33.333 0.00 0.00 0.00 1.40
803 805 7.719633 ACGATCTGTGTTTATAAGGGCAATATT 59.280 33.333 0.00 0.00 0.00 1.28
804 806 7.224297 ACGATCTGTGTTTATAAGGGCAATAT 58.776 34.615 0.00 0.00 0.00 1.28
809 811 6.456501 AGATACGATCTGTGTTTATAAGGGC 58.543 40.000 0.00 0.00 38.44 5.19
810 812 8.765219 CAAAGATACGATCTGTGTTTATAAGGG 58.235 37.037 0.00 0.00 39.34 3.95
811 813 8.765219 CCAAAGATACGATCTGTGTTTATAAGG 58.235 37.037 11.62 0.00 42.02 2.69
812 814 9.314321 ACCAAAGATACGATCTGTGTTTATAAG 57.686 33.333 11.62 1.68 42.02 1.73
813 815 9.661563 AACCAAAGATACGATCTGTGTTTATAA 57.338 29.630 11.62 0.00 42.02 0.98
817 819 7.972832 TTAACCAAAGATACGATCTGTGTTT 57.027 32.000 11.62 7.97 42.02 2.83
820 822 7.770801 TGATTAACCAAAGATACGATCTGTG 57.229 36.000 7.63 7.63 43.00 3.66
822 824 8.196802 TGTTGATTAACCAAAGATACGATCTG 57.803 34.615 0.00 0.00 36.47 2.90
823 825 8.830580 CATGTTGATTAACCAAAGATACGATCT 58.169 33.333 0.00 0.00 37.31 2.75
824 826 7.587757 GCATGTTGATTAACCAAAGATACGATC 59.412 37.037 0.00 0.00 35.92 3.69
825 827 7.066887 TGCATGTTGATTAACCAAAGATACGAT 59.933 33.333 0.00 0.00 35.92 3.73
826 828 6.372937 TGCATGTTGATTAACCAAAGATACGA 59.627 34.615 0.00 0.00 35.92 3.43
827 829 6.550843 TGCATGTTGATTAACCAAAGATACG 58.449 36.000 0.00 0.00 35.92 3.06
828 830 7.485913 CACTGCATGTTGATTAACCAAAGATAC 59.514 37.037 0.00 0.00 35.92 2.24
830 832 6.209192 TCACTGCATGTTGATTAACCAAAGAT 59.791 34.615 0.00 0.00 35.92 2.40
831 833 5.534278 TCACTGCATGTTGATTAACCAAAGA 59.466 36.000 0.00 0.00 35.92 2.52
832 834 5.771469 TCACTGCATGTTGATTAACCAAAG 58.229 37.500 0.00 0.00 35.92 2.77
833 835 5.781210 TCACTGCATGTTGATTAACCAAA 57.219 34.783 0.00 0.00 35.92 3.28
836 838 4.675510 CCATCACTGCATGTTGATTAACC 58.324 43.478 0.00 0.00 35.92 2.85
837 839 4.107622 GCCATCACTGCATGTTGATTAAC 58.892 43.478 3.47 0.00 37.32 2.01
838 840 3.130869 GGCCATCACTGCATGTTGATTAA 59.869 43.478 0.00 0.00 30.60 1.40
840 842 1.479323 GGCCATCACTGCATGTTGATT 59.521 47.619 0.00 0.00 30.60 2.57
841 843 1.108776 GGCCATCACTGCATGTTGAT 58.891 50.000 0.00 0.00 30.60 2.57
842 844 0.966875 GGGCCATCACTGCATGTTGA 60.967 55.000 4.39 0.00 30.60 3.18
843 845 0.968901 AGGGCCATCACTGCATGTTG 60.969 55.000 6.18 0.00 0.00 3.33
846 848 0.467474 ATCAGGGCCATCACTGCATG 60.467 55.000 6.18 0.00 34.76 4.06
847 849 0.260816 AATCAGGGCCATCACTGCAT 59.739 50.000 6.18 0.00 34.76 3.96
848 850 0.040058 AAATCAGGGCCATCACTGCA 59.960 50.000 6.18 0.00 34.76 4.41
849 851 2.057137 TAAATCAGGGCCATCACTGC 57.943 50.000 6.18 0.00 34.76 4.40
851 853 3.962718 CCAAATAAATCAGGGCCATCACT 59.037 43.478 6.18 0.00 0.00 3.41
855 857 6.808357 AGATATCCAAATAAATCAGGGCCAT 58.192 36.000 6.18 0.00 0.00 4.40
858 860 9.077885 TGTAAAGATATCCAAATAAATCAGGGC 57.922 33.333 0.00 0.00 0.00 5.19
892 908 4.162320 ACCGAGCAAGGAAAGAGAATCATA 59.838 41.667 4.39 0.00 33.94 2.15
1092 1114 7.079048 AGTGGTAGGATATCTCAGGAATCTTT 58.921 38.462 2.05 0.00 0.00 2.52
1282 1304 5.335113 CGGCCACTATCAAATCAACCATATG 60.335 44.000 2.24 0.00 0.00 1.78
1381 1403 8.347004 TCAAACAAGGCAATATCACAATCTAA 57.653 30.769 0.00 0.00 0.00 2.10
1398 1420 0.321671 TCTCGGCTCCCTCAAACAAG 59.678 55.000 0.00 0.00 0.00 3.16
1563 1585 3.675228 CGACATGTAAGGGGTGTAGACAC 60.675 52.174 0.00 4.13 45.72 3.67
1569 1591 1.001633 GACACGACATGTAAGGGGTGT 59.998 52.381 14.84 14.84 43.56 4.16
1766 1796 1.134694 GGCAAGAAACGCGTGATCC 59.865 57.895 14.98 4.93 0.00 3.36
1786 1816 7.553881 AGAACCCAGTGAATTTGTATATTCG 57.446 36.000 0.00 0.00 37.34 3.34
1835 1865 6.676237 AACAATTCCATTTTTGTGGTTGTC 57.324 33.333 3.40 0.00 37.43 3.18
1868 1898 9.137459 CTGGTTCTCAGATAAGGAGTTAATCTA 57.863 37.037 0.00 0.00 46.18 1.98
2045 2075 3.134623 CAGGACAGTTGGGCATAGTGATA 59.865 47.826 0.62 0.00 0.00 2.15
2072 2102 1.744368 CGCAGACAGATTGCAGGCT 60.744 57.895 0.00 0.00 41.59 4.58
2108 2138 0.685097 AGACTTTGGCTCGCAACCTA 59.315 50.000 0.00 0.00 0.00 3.08
2149 2179 5.051907 CGTAATGAAATCGAGGGAAACTACG 60.052 44.000 0.00 0.00 0.00 3.51
2150 2180 5.233689 CCGTAATGAAATCGAGGGAAACTAC 59.766 44.000 0.00 0.00 0.00 2.73
2182 2212 2.738521 CACTGGAAGGCCGTCACG 60.739 66.667 20.72 12.31 39.30 4.35
2186 2216 3.120086 AACAGCACTGGAAGGCCGT 62.120 57.895 0.00 0.00 39.30 5.68
2190 2220 0.031178 GCAACAACAGCACTGGAAGG 59.969 55.000 2.21 0.00 39.30 3.46
2221 2251 1.570813 CTTCGTCCGCAATGCTCATA 58.429 50.000 2.94 0.00 0.00 2.15
2222 2252 1.709147 GCTTCGTCCGCAATGCTCAT 61.709 55.000 2.94 0.00 0.00 2.90
2223 2253 2.390599 GCTTCGTCCGCAATGCTCA 61.391 57.895 2.94 0.00 0.00 4.26
2224 2254 2.401195 GCTTCGTCCGCAATGCTC 59.599 61.111 2.94 0.00 0.00 4.26
2225 2255 3.127533 GGCTTCGTCCGCAATGCT 61.128 61.111 2.94 0.00 0.00 3.79
2255 2285 9.838339 CTATTGACCTTCCTAGATTAAACATGT 57.162 33.333 0.00 0.00 0.00 3.21
2304 2334 2.498078 CCCCCAGGCGCTTTTAAAAATA 59.502 45.455 7.64 0.00 0.00 1.40
2305 2335 1.277842 CCCCCAGGCGCTTTTAAAAAT 59.722 47.619 7.64 0.00 0.00 1.82
2306 2336 0.682292 CCCCCAGGCGCTTTTAAAAA 59.318 50.000 7.64 0.00 0.00 1.94
2307 2337 2.356992 CCCCCAGGCGCTTTTAAAA 58.643 52.632 7.64 0.00 0.00 1.52
2344 3045 3.961414 GGGCGAGTTGGTCCCCAA 61.961 66.667 0.00 0.00 41.69 4.12
2359 3060 0.821517 GTAAAAATTGGGCCTCGGGG 59.178 55.000 4.53 0.00 0.00 5.73
2360 3061 0.454196 CGTAAAAATTGGGCCTCGGG 59.546 55.000 4.53 0.00 0.00 5.14
2361 3062 0.179148 GCGTAAAAATTGGGCCTCGG 60.179 55.000 4.53 0.00 0.00 4.63
2363 3064 0.179148 CGGCGTAAAAATTGGGCCTC 60.179 55.000 4.53 0.00 41.58 4.70
2364 3065 1.600511 CCGGCGTAAAAATTGGGCCT 61.601 55.000 4.53 0.00 41.58 5.19
2368 3069 0.523966 TGAGCCGGCGTAAAAATTGG 59.476 50.000 23.20 0.00 0.00 3.16
2369 3070 1.613270 GTGAGCCGGCGTAAAAATTG 58.387 50.000 23.20 0.00 0.00 2.32
2370 3071 0.524414 GGTGAGCCGGCGTAAAAATT 59.476 50.000 23.20 0.00 0.00 1.82
2371 3072 1.310216 GGGTGAGCCGGCGTAAAAAT 61.310 55.000 23.20 0.00 34.97 1.82
2372 3073 1.967494 GGGTGAGCCGGCGTAAAAA 60.967 57.895 23.20 0.72 34.97 1.94
2373 3074 2.358984 GGGTGAGCCGGCGTAAAA 60.359 61.111 23.20 2.78 34.97 1.52
2374 3075 3.305177 GAGGGTGAGCCGGCGTAAA 62.305 63.158 23.20 4.88 34.97 2.01
2375 3076 3.766691 GAGGGTGAGCCGGCGTAA 61.767 66.667 23.20 7.86 34.97 3.18
2388 3089 1.668419 CTAAAATCGCCACCTGAGGG 58.332 55.000 2.38 0.00 38.88 4.30
2389 3090 1.668419 CCTAAAATCGCCACCTGAGG 58.332 55.000 0.00 0.00 0.00 3.86
2390 3091 1.017387 GCCTAAAATCGCCACCTGAG 58.983 55.000 0.00 0.00 0.00 3.35
2393 3094 2.112815 GCGCCTAAAATCGCCACCT 61.113 57.895 0.00 0.00 45.01 4.00
2394 3095 2.407616 GCGCCTAAAATCGCCACC 59.592 61.111 0.00 0.00 45.01 4.61
2399 3100 0.036306 ATAGGGGGCGCCTAAAATCG 59.964 55.000 30.94 0.00 0.00 3.34
2402 3103 1.061546 CCTATAGGGGGCGCCTAAAA 58.938 55.000 30.94 21.19 0.00 1.52
2403 3104 2.768046 CCTATAGGGGGCGCCTAAA 58.232 57.895 30.94 14.74 0.00 1.85
2414 3115 1.071471 CAGCGGTTGGCCCTATAGG 59.929 63.158 12.27 12.27 45.17 2.57
2416 3117 3.236391 CCAGCGGTTGGCCCTATA 58.764 61.111 0.00 0.00 45.17 1.31
2424 3125 3.805267 GAGCATCTCCAGCGGTTG 58.195 61.111 0.00 0.00 37.01 3.77
2437 3138 2.502947 AGATGCCACATGTCTTAGAGCA 59.497 45.455 0.00 0.00 0.00 4.26
2438 3139 3.191078 AGATGCCACATGTCTTAGAGC 57.809 47.619 0.00 0.00 0.00 4.09
2439 3140 4.763073 TCAAGATGCCACATGTCTTAGAG 58.237 43.478 0.00 0.00 31.40 2.43
2440 3141 4.824479 TCAAGATGCCACATGTCTTAGA 57.176 40.909 0.00 0.00 31.40 2.10
2441 3142 6.127814 ACAATTCAAGATGCCACATGTCTTAG 60.128 38.462 0.00 0.00 31.40 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.