>input_sequence_77910
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-------------------------------------------------------------ATGCAGACTCTTACCGTGC
TCTTCTTCCTCACCCTAGCCATGCTCCCGGGCCTCATAGCCAGCACCTCGTCTGTCATCAACACAACATGCTCAAAGATT
CCTGAGATATCCTACCACTATTGTGTTGGCGTGCTCTCGGCCGAACCAACAGGTGCCTCCGCCATAGATACGCGTGGGCT
GGCCGTCGCCGCTGCCAACCTAACCGTTCACAACGTGACGTCCACGTTGCATATGATGGGCGACTTAGTGTTGGAGCTCA
ACGCTTGCATCGGTTATTATAAGCATATGGTTGATTTGATAGTGGCCGCCGTTGATGACTTGCACAAAGGACGAGATGCT
GAACTGATATACGAAAATTTATATCAGGCCTCATATACGCCCTTAGATTGTGATATTGCCTTGTTTGAGGGAGCCGAGAA
GAATCCCATGCAGGAAGAGAACTCAGAAAATCAAGCTTTGGCCCGCATAGCGAGTGGCATCGCGTTTCTCATGTGGCATG
GACGTTCTTAA---------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G338000
ATCAAAAGCAACCGTCCCCCAACTGAGAGCAGTTTGCCTTTCCAACTGCTTAACCGTTTCTCTAGACGCTCCTCTACATG
CTTCCACTCTGCAATGGTGAGGCGCCGACAATGAATCGGTATTCTCAGATATTTAATCGGGAATTGGACATGTACGCAAC
CAAATAGGTCACCATAATCGGCCACCGCCTCAATGACTTCTCCAAAGCAGAACGATTCACTTTTATGGAAGTATATTTTG
AGACCCAGCATTTGCTCAAACGCTGAAAGCAAGAGTTTCAGGTTTTGAGCCTTGTCCAGATCATGTTCCATAAAAAGAAT
CGTTTCATCCATTCAGTAATAAGTGCATTTTCATTCGTTTCTTTAAGAACATTTCTTCCCGATCTTGATCTGCCAGCAAA
ATAATTCAGCTTTCAGCTCATGTCCCTCTATTTTTTATATTGCAACTATGTTCTGCCATATCTCTCCTCTTGTAACGATG
TAATCAGAACTTGGGCTTATTGTTTCACTACTTCCTTCTACATAAACAAAAGGCTTATGACAATAT-ACATCTTAAATCC
TGTGGCTAAGTATATATTACTTTGTTGTGTCACGTGTTTTACTATCAAACTTGATTATTGATCCTCACAGAAGAAAGATG
CGACTTTTTTACTGGTCATTAATAAACCAAAGATACGATAAGCCTTTTGTTTAATAGGCTAAAAAGGAAAGAGAATCATG
CATTAAATGTAAAGATATCGAAATAAATACTCCCGGGCTGGCTCTTTAAACCACACGCATTTGTGAACATAACTTTAAAG
AAAAAATATTGCCCTTATAAACACAGATCGTATCTTTGGTTAATCAACATGCAGTGATGGCCCTG--------------A
TTTATTTGGATATCTTTACATTTAATGTATGATTCTCTTTCCT------TGCTCGGTTCGGTGCTTAAATTAGACTTGCG
GAGTGCAGTGATCAATCCTCGCAAAAAGCTTTGTATGATGTACTTGCAAACAAATTAACAAATGCAGACTCTTACCGTGC
TCTTCTTCCTCACCCTAGCCATGCTCCCGGGCCTCATAGCCAGCACCTCGTCTGTCATCAACACAACATGCTCAAAGATT
CCTGAGATATCCTACCACTATTGTGTTGGCGTGCTCTCGGCCGAACCAACAGGTGCCTCCGCCATAGATACGCGTGGGCT
GGCCGTCGCCGCTGCCAACCTAACCGTTCACAACGTGACGTCCACGTTGCATATGATGGGCGACTTAGTGTTGGAGCTCA
ACGCTTGCATCGGTTATTATAAGCATATGGTTGATTTGATAGTGGCCGCCGTTGATGACTTGCACAAAGGACGAGATGCT
GAACTGATATACGAAAATTTATATCAGGCCTCATATACGCCCTTAGATTGTGATATTGCCTTGTTTGAGGGAGCCGAGAA
GAATCCCATGCAGGAAGAGAACTCAGAAAATCAAGCTTTGGCCCGCATAGCGAGTGGCATCGCGTTTCTCATGTGGCATG
GACGTTCTTAAAGGATATGTCTGGGTACTTAACTTTGTACTACATCTATCATGTGAATAAAGAGGTGTCTACACCCCTTA
CA-------TGTCGTGTCCCCCTTTCTCTTTTGCTTGTTTAAACATGAGTCATCTGCAATGTGTTGGCCTACTGTTTGTT
TAGCACCTCATCGACACATTAAATTTCTATTCCATAAGCAGATCTCAACTGTGGTACAATATA-ATCATGGATTCATTAG
CAGTGAACAGTTTACTCTTGTCCTCCAAAACATGAGGATCACGCGTTTCTTGCCCCGAATATACAAATTCACTGGGTTCT
AGTTTTTGTACTATCCTCACAATTGACAACCACAAAAATGGAATTGTTTCCTCCACATAGATTAACTCCTTATCTGAGAA
CCAGATCTTCCAACACTTCTGTTTGCATTGATTGGATACGATTTTGTGTGGTTAATTTTTACTGAATGTAGTAGGATAGT
GTGTCAGGAGGTGGGGCCGCGACTCGCTTATGTTTTCCTAGAGCTTGACGGTGTTACGCAGCAGGGTTTGCGATTATCAC
TATGCCCAACTGTCCTGCCGTAGCCTGCAATCTGTCTGCGAGGATGGCTGGAACCTGTAGGTTGCGAGCCAAAGTCTGAA
AGAACTCGCGCTCGTCACCGTAGTTTCCCTCGATTTCATTACGGGCTTGGCCGTGACGGCCTTCCAGTGCTGTTGTTGCT
GGGCAGGATGTATGAGCATTGCGGACGAAGCCATCACTCGTTCAACATGTTTAATCTAGGAAGGTCAATAGAAAGAAGAT
AACACAAGTATTTTATTTTTAAAAG-------------------------------------------------------
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--------------------------------------------------------CGCCTGGGGGCGGCCCTGGGACCG
GCGGTTGGGGACCAACTCGCCCCGAGGCCCAATTTTTACGCCGGCTCACCCTCAGGTGGCGATTTTAGGCGCCCCCTATA
GGGCCAACCGCTGGAGATGCTC----------------------------------------------------------
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-------------------------------------------------------------------TAAGACATGTGGC
ATCTTGAATTGTGCTTGATCATTTGAAGTTGCGGTTTCCTATTGCCGCCATTGCT
>chr5D_331
ATGTTTAATCTAGGAAGGTCAATAGAAAGAAGATAACACCAAGTATTTGGAATAGCAACTGAACTGAACTGTAATCCCTC
CGTTCCATAATTATTGTCGCGGTTTTATTTGAAATTTGAACTAAAACCACGCCAATAATTATGGAATGGAGGAAGTAGTA
CTACCTCCATCCCCAAGTAAGTGTCGCTGATTTAGTACA-----------------------------------------
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--------------------AAGTGCATTTTCATTAGTTTCTTTAAGAACATTTCTTCCCGATCGTGATCTGCCAGCAAA
ATAATTCAGCTTTCAGCTCATGTCCCTCTATTTTTTATATTGCAACTATGTTCTGCCACATCTCTCCTCTTGTAACGATC
TAATCAGCACTCGGGCTTATTGTTTCACTACTTCCTTCTGCATAAACAAAAGGCTTATGACAATATGACATCTTAAATCC
TATGGCTAAGTAT----TACTTTGTTGTGTCACGTGTCTTACTGTC----------------------------------
-------------GGTCATTAATAGACCAAAGATACGATAAGCCTTTTGTTTAATAGACTAAAAAGGAAAGAAAATCATG
CATTAAATGTAAAGATATCCAAATAAATCAGGGCCATCACTGCATGTTGATTAACCAAAGATACGATATACTACTAGTAG
TATCTGTATTCATAATATCAATATTTTCTTTTAAGTTATGTTCATAAATGCCCGTGGTGTAAAGAGCCAGCTGGGGAGTA
TTTATTTGGATATATTTACATTTAATGCATGATTCTCTTTCCTTTTTAGTGCTCGGTTCGGTGCTTAAATTAGACTTGCG
GAGTGCAGTGATCAATCCTCGCAAAAAGCTTTGTATGCTGTACTTGCAAACAAATTAACAAATGCAGACTCTTACCATGC
TCTTCTTCCTCACCCTAGCCATGCTCCCGGGCCTCATAGCCAGCACCTCGTCTGTCATCAACACAACATGCTCCAAGATT
CCTGACATGTCCTACCACTATTGTGTTGGCGTGCTCTCAGCCGAACCAACAGGTGCCTCCGCCATAGATACGCGTGGGCT
GGCCGTCGCCACTGCCAACCTAACCGTTCACAACGTGACGTCCACGTTGCATATGATGGGCGACTTAGTGTTGGAGCTCA
ACGCTTGCATCGGTTATTATAAGTATATGGTTGATTTGATAGTGGCTGCCGTTGATGACTTGAACAAAGGACGAGATGCT
GAACTGATATACGAAAAGTTATATAAGGCCTCATATACGCCCCTAGATTGTGATATTGCATTGTTTGAGGGAGCCGAGAA
GAATCCCATGCAGGAAGAGAACTCAGAAAATCAAGCTTTGGCCCGCATAGCGAGTGGCATCGCGTTTCTCATGTGGCATG
GACGTTCTTAAAGGATATGTCTGGGTACTTAACTTTGTACTACATCTATCATATGAATAAAGAGATGTCTCCACCCCTTA
CA-------TGTCGTGTCCCCCTTTCTGTTTTGCTTGTTTAAACATGAGTCGTCTGCAATATGTTGGCCTACTGTTTGTT
TAGCACCTCATCGACACATTAAATTTCTATTCCATAAGCAGATCTCAACTGTGGTACAACATA-ATCATGGATTCATTAG
CAGTGAACGGTTTACTCTTGTCCCCCAGAACATGATGAGCACGCATTTCTTGCCCTGAATATACAAATTCACTGGGTTCT
AGTTTTTGTACTATCCTCACAATTCACAACCACAAAAATGGAATTGTTTCCTCCACAAAGATTAACTCCTTATCTGAGAA
CCAGATCTTCCAAGACTTCTGTTTGCATTGATTGGATACGATTTTGTGTGGTTAATTTTTACTGAATGTAGTAGGATAGT
GTGTCGGGAGGTGGAGCCGCGACTCGCTTATGTTTTCCTAGAGCTTGACGGTGTTACGCAGCAGGGTTTGCAATGATCAC
TATGCCCAACTGTCCTGTCGTGGCCTGCAATCTGTCTGCGAAGATGGCTGGAACCTGGAGGTTGCGAGCCAAAGTCTGAA
AGAACTCGGGCTTGTCAC--TAGTTTCCCTCGATTTCATTATGGGCTTCGTGGTGGCGGGCTTCCAGTGCTGTTGTTGCT
GGGCAGGATGG----GCATTGCGGACGAAGCGATCACTCGTTCGCCATGTTTAATCTAGGAAGGTCAATAGAAAGAAGAT
AACACAAGTATTTGGAATAGCAACTGAACTC-----AACTGTAATCCCTCCATTTCATAATTATTGTCACAGATTTATTT
GAAATTTGAACTAAAACCACGCCAATAATTATGGAATGGAGGAAGTAGTACTTGCTCCGTCCCAAAATAAGTGTCGCTGA
TTTAGTACAAAGTTATAGGTAGTATATAATAACTTAGGTTACACATGGCATCCTGAAGCTTGGCTATTGGCTATTGCACA
CCGTCGCTGACAAAACCTATGGCTGGCAACAAAGGACTGCACAAGGGTTTTGGATATCATCT------------------
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---ACTCCCTCCGATCCATAATAAGTGTCGTGGTTTTAGTTCAATGAGCTGCTTTGCCAATGTCTCCTGAGCAAAATAGT
GATACACTTGCTAGTACAGTATCCAAAGAGATGCGCGCGGAGTTGTCTCTCACACAGACCGAATACAGTATCCAAGACTC
CAAGAGGTTCTGGAAACATTGAACCAAGATTGTTCAGAACAGTAGGTTAATCATACCGTCAGCGTCGTAAGACATGTGGC
ATCTTGAATTGTGCTTGATCATTTGAAGTTGCGGTTTCCTATTGCCGCCATTGCT
>chr5B_865
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-------------------------------------------------------------------------------A
TTTATTTGGATATATTTACATTTAATGCATGATTCTCTTTCCTTTTTAGTGCTCGGTTCGGTGCATAAATTAGACTTGTA
GAGTGCAGTGATCAATCCTCGCAAAAAGCCTTGTATGCTGTACTTGCAAACAAATAG-CAAATGCAGACTCTTACCGTGC
TCTTCTTCCTCACCCTAGCCATGCTCCCGGGCCTCATAGCCAGCACCTCGTCTGTCATCAACACAACATGCTCCAAGATT
CCTGAGATATCCTACGACTATTGTGTTGGCGTGCTCTCGGCCGAACCAACAGGTGCCTCCGCGATAGATACGCGTGGACT
GGCCCTCGCTGCCGCCAACCTAACCGTGCACAACGTGACGTCCACGTTGCATATGATGGGCGACTTAGTGTTGGAGCTCA
ACGCTTGCATCCGTTATTACAAGTATATGGTTGATTTGATAGTGGCCGCCGTTGATGACTTGCACAAAGGACGAGATGCT
GAACTGATATACGAAAAGTTATATAAGGCCTCAGATACGCCCCTAGATTGTGATATTGCATTGTTTGAGGGAGCTCAGAA
GAATCCCGTGCAGGAAGAGAACTCGGAAAATCAAGCTTTGGCCCGCATAGCGAGTGGCATCGCGTTTCTCATGTGGCATG
GACGTTCTTAAAGGATATGTCT-------TAACTTTGTACTACATCTATCATATGAATAAAGAGATGTCTCCACCCCTTA
CATGTCGTGTGTCGTGTCCCCCTTTCTCTTTTGCTTGTTTAAACATGAGCCATCTGCAATGTGTTTGCCTACTGTTTGTT
TAGCACC-------------------------CATAACCAGATCTCAACTGTGGTACCATATATATCATAGATTCATTAG
CAGTGAACAGTTTATACTTGTCCTCCAAAACATGATGATCACGCGTTTCTTGCCCTGAATATACAAATTCACTGGGTTCT
AGTTCTTGTACTATCCTCACAATTCACAACCACAAAAATGGAATTGTTTCCTCCACAAAGATTAACTCCTTATCTGAGAA
CCAGATCTTCAAACACTTTTGTTTGCATTGATTGGATACGATTTTGTGTGGTTAATTTTTACTGAATGTAGTAGGATAGT
GTGTCGGGTGGTGGAGCCGCGACTCCCTTATG-TTTCCTAGAGCTTGACGGTGTTACGCAGCAGGGTTTGCGATGATCAC
TATGCCCAACTGTCCTGCCGTGGCCTGCAATCTGTCTGCGAGGATGGATGGAACCTGGAGGTTGCGAGCCAAAGTCTGAA
AGAACTCAGGCTCGTCAC--TAGTTTCCCTCGATTTCATTACGGGCTTCGCAGTGGC-GGCTTCCAGTGCTGTTGTCGTT
GGGAAGGATGG----GCATTGCGGACCAAGCCATCACTCGTTCGCCATGTTTAATCTAGGAAGGTCAATAGAAAGAAGAT
AACACAAGTATTTGGAATAGCAACTGAACTGAACTGAACTGTAATCCCTCCGTTTCATAATTATTGTCACGGATTTATTT
GAAATTTGAAGTAAAACCACGCCAATAATTATGGAATGGAGGAAGTAGTACTTCCTTCGTCCCATAATAAGTGTCGCTGA
TTTAGTAGAAAGTTATAGGCAGTACATAATAACTTAGGTTACACATGGCATCATGAAGCTTGGCTATTGGCTATTGCACA
CCATCGCTGACAAAACCTATGACTGGCAACAAAGGACTGCACAAGGGTTTTGGATATCATCTACTCCCTCCGATGGAGGT
CTGAAGGCGCGTCTCGGGAGATCCAGATCCGGCAGCGGCGGCCAGCTCCCTCCCCCGCCCCCTCCTCCTCCTCGCCGCCG
TCGGAGGGCGTCCGCCGGGCGAAGCCCGTGTGGCGCTGGCAGCAGCAGGGCCTCTCTCCTCCCTCCCCTGCTCGGGATCC
CGGCGACGCGGGTCAGCTGGCCGTGGGGGAGCTGGATCCGGCGAGCTCTCCGGCGGCGGGGACGCACGGATTCTGCAGCA
GCGGTGCTGGGAGGCGGTGGTGCGGCTCTGCAGCGGTGGTGGGGGGGGGCTAGGTCCGGCGAGGTTGATCTGATCCCCTC
GGGGCTGCGGGTGTTGCTGGTGGCGGCGACCACGGTTGGAGAGGGCGCTGCTCTCACGTCTGGGGGTGGCGCTGGCGCTG
CGGTGCGCTGGTCTTGGCCGTGCTGGGCAGCGAGGCGGTGGCGGCCATGGATCTTGATCTGAAGTTGGAGGCTTTCACCG
GCGCTTGTCCTCCTGGACCGGTCGAGATGTGGGCGTCCTCCTGGCGTCATGTTCAGTGTCGGGGCGCTGGGTGTGGGCAC
TAGGTTGGGGGAATCCCTTGGCCGGTGATGTCGGGCACGATGTTGGCAACGCCCGTGGCGCCGTTATCCCTCTGGTGGGC
AACATCGAGACCTACTCCATGCCCTCCGCCTCCTGGTCTCGGGCGAAAGCCTACAATCTCTGGATTGGGGCGGCGGTGGC
GCGTCAGCGTCATGTAAGGCGCCGTCTTGGGTGATCAGCGGTCTAGGATTTGGCGTGGTGTTGGTCTGCTTCTTCTGTAG
GGTTCATGTCCGACAGCTGCGGCGGGCTTCTGGGTCTTGGCCGGAGACGGTGGCGATGTATGGGTTTCTTTCAGAGGTGA
GGTTGCCAGGGCAGTCGCTCTCTCCTTGGCAACTGGTTCACCGGTCCAAGTGTGCTCGGGGGTGAGCTGCTTTGCCTACT
GATGGGTCGATGTCCTTCGATCCAGGACGAGAGGGCGGGGGGCCCTCTTCAGCGGCAGATTAGGATGGTGAATCGAGTGG
CCCTGGGAAGCGACAAAGCATGGCTCTCCTCCGACAACGATTAGCTCCCTTGTCGCGGGCGTGTCCATGTCATGATTTGT
AACCGTCGTGGGCTCCGAAGTACTTTTGGGTTCTTCGGAGCTCGTTAGCTGTTCCGTAGTGCTTTGTATCCGTGTCGAGT
GTATTTTCTGTTTCCTGTTGTCCTGTTGGTTGTAAGGTGTGGCATTGCTTTATATATAAAGTAGGGTGAAAGCTTTTTTC
GGTACTCCCTCCGGTCCATAATAAGTGTCATGGTTTTAGTTCAATGAGCCGCTTTGCCAATGTATGCTGAGCAAAATAGT
GATACACTTGCTAGTACCGTATCCAAAGAGAT----GCGGAGTTGTCTCTCACACAGACCGAGTACAGTATCCAAGACTC
CAAGAGGTTCTAGAAACATTGAACCAAAATTGTTCAGAACAGTAGGTCAATGATACCGTCAGCGTCGTAAAACACGTGGC
ATCTTGAATTGTGCTTGATCATTTGAAGTTGCGGTTTCCTATTGCCGCCATTGCT
>SNPs
--SSSS-SSSSSS-SSSSS---SS--S--S--S-SS-SSSSSSS-S-SSSS-SSSSSSSSSSSSSSSS--SSSS-S-S-S
-S-S-SS-SSSS-S--SS-S--SSSSSSSSSSS-S-S-SSS-SSSSSS-SSSSS-SSSSSSSSSSSSSS-S-S-SSSSSS
-S-SSSSSSSS--SS-S-SS-SSS-SSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS---------------S----------------------------S---------------
----------------------------------------------------------S--------------------S
-------S---S---------------------------S----------------------------------------
-S-----------SSSS--------------------S-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS-----------S--------------------------------S--------------S-------
-------------------S--------SSSSS-SSS-SSSSSS-S-SS-SS-SS-SS-SS-SS--SSSSSSSS-SSS--
S-SSSS----SSSSS---S--S-SSSSSSS-SSSS--SSS-SSSS--SSSS-S---S--SSSSSS---------------
-------------S-------------S----------------------------------------------------
-------------------------------------S------------------------------------------
-------------------------------------------------------------------------S------
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-----------------------S--------------------------------------------------------
-----------------S------S-----------------S----------------S--------------------
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----------------------------------------------------S-----------S-----S---------
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-----------------------------------S-------------------S------------------------
------------------------S--------------------------------S----------------------
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-----S--------S-----------------------------------------------------------S-----
---------------------S-----------------------------------S----------------------
--------S---------SS----------------------------S--S---S---S--------------------
----------SSSSS----------------------------SS-----------------------------------
-------------SSSS-SSS--SS-------------------------------------------------------
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----------------------------------------------------------S-------S---S----SS-S-
SS-SSS-SS-SS-SSSS-SSSS-SS---SSSSSSSSSSS-S----SSSSSS--SS-SSSS--SS--S-SS--SSS-SSSS
-S--SSSS-SSSSSS--SSSSS----------------------------------------------------------
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>forward_201
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---------------------CCACCGCCTCAATGACTTCT---------------------------------------
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>reverse_2220
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-----------------------------------------------------------CCTTCCAGTGCTGTTGTTGC-
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-------------------------------------------------------
