Multiple sequence alignment - TraesCS4A01G332000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G332000 chr4A 100.000 2633 0 0 1 2633 616500029 616502661 0.000000e+00 4863.0
1 TraesCS4A01G332000 chr4A 96.893 354 10 1 1 354 453029187 453028835 2.260000e-165 592.0
2 TraesCS4A01G332000 chr4A 89.552 67 3 2 1885 1951 616502133 616502195 6.040000e-12 82.4
3 TraesCS4A01G332000 chr5B 86.112 2333 172 60 359 2633 700210440 700208202 0.000000e+00 2374.0
4 TraesCS4A01G332000 chr5D 91.381 1694 75 15 349 2005 551925916 551924257 0.000000e+00 2254.0
5 TraesCS4A01G332000 chr5D 91.114 799 47 13 1852 2633 551923601 551922810 0.000000e+00 1061.0
6 TraesCS4A01G332000 chr5D 96.610 354 12 0 1 354 453207051 453207404 2.920000e-164 588.0
7 TraesCS4A01G332000 chr5D 96.610 354 12 0 1 354 496455230 496454877 2.920000e-164 588.0
8 TraesCS4A01G332000 chr5D 93.651 63 4 0 2105 2167 551923569 551923507 7.760000e-16 95.3
9 TraesCS4A01G332000 chr3D 97.740 354 8 0 1 354 237849795 237849442 6.230000e-171 610.0
10 TraesCS4A01G332000 chr3D 96.901 355 10 1 1 354 545184312 545183958 6.270000e-166 593.0
11 TraesCS4A01G332000 chr3D 96.893 354 11 0 1 354 568406399 568406752 6.270000e-166 593.0
12 TraesCS4A01G332000 chr2D 97.175 354 10 0 1 354 298615508 298615155 1.350000e-167 599.0
13 TraesCS4A01G332000 chrUn 96.884 353 11 0 2 354 105414903 105415255 2.260000e-165 592.0
14 TraesCS4A01G332000 chr7D 96.610 354 12 0 1 354 239302413 239302060 2.920000e-164 588.0
15 TraesCS4A01G332000 chr7A 88.945 199 17 3 2056 2250 434777268 434777071 9.420000e-60 241.0
16 TraesCS4A01G332000 chr7A 87.374 198 24 1 2341 2537 434777053 434776856 2.640000e-55 226.0
17 TraesCS4A01G332000 chr1B 88.945 199 17 3 2056 2250 439439254 439439057 9.420000e-60 241.0
18 TraesCS4A01G332000 chr1B 88.945 199 17 3 2056 2250 633760513 633760316 9.420000e-60 241.0
19 TraesCS4A01G332000 chr1B 87.374 198 24 1 2341 2537 439439039 439438842 2.640000e-55 226.0
20 TraesCS4A01G332000 chr1B 87.374 198 24 1 2341 2537 633760298 633760101 2.640000e-55 226.0
21 TraesCS4A01G332000 chr6B 88.442 199 17 4 2056 2250 281010808 281010612 4.380000e-58 235.0
22 TraesCS4A01G332000 chr6B 84.848 198 29 1 2341 2537 281010594 281010397 5.750000e-47 198.0
23 TraesCS4A01G332000 chr3B 88.442 199 17 4 2056 2250 143518205 143518401 4.380000e-58 235.0
24 TraesCS4A01G332000 chr3B 86.364 198 26 1 2341 2537 143518419 143518616 5.710000e-52 215.0
25 TraesCS4A01G332000 chr1A 87.940 199 19 3 2056 2250 581639162 581639359 2.040000e-56 230.0
26 TraesCS4A01G332000 chr1A 86.869 198 25 1 2341 2537 581639377 581639574 1.230000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G332000 chr4A 616500029 616502661 2632 False 2472.700000 4863 94.776000 1 2633 2 chr4A.!!$F1 2632
1 TraesCS4A01G332000 chr5B 700208202 700210440 2238 True 2374.000000 2374 86.112000 359 2633 1 chr5B.!!$R1 2274
2 TraesCS4A01G332000 chr5D 551922810 551925916 3106 True 1136.766667 2254 92.048667 349 2633 3 chr5D.!!$R2 2284

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.10852 ACTATGCCGTGTACGTTGGG 60.109 55.0 0.0 0.0 37.74 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 1799 0.484212 ATCGGCCCATGGGATTGATT 59.516 50.0 36.0 13.91 37.5 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.477984 TCTATGGCAAAACTTTGAATTTATGC 57.522 30.769 6.37 0.00 40.55 3.14
29 30 8.093307 TCTATGGCAAAACTTTGAATTTATGCA 58.907 29.630 6.37 0.00 40.55 3.96
30 31 7.690952 ATGGCAAAACTTTGAATTTATGCAT 57.309 28.000 3.79 3.79 40.55 3.96
31 32 6.900189 TGGCAAAACTTTGAATTTATGCATG 58.100 32.000 10.16 0.00 40.55 4.06
32 33 6.072618 TGGCAAAACTTTGAATTTATGCATGG 60.073 34.615 10.16 0.00 40.55 3.66
33 34 5.796437 GCAAAACTTTGAATTTATGCATGGC 59.204 36.000 10.16 0.00 40.55 4.40
34 35 5.783100 AAACTTTGAATTTATGCATGGCG 57.217 34.783 10.16 0.00 0.00 5.69
35 36 4.717233 ACTTTGAATTTATGCATGGCGA 57.283 36.364 10.16 0.00 0.00 5.54
36 37 5.070770 ACTTTGAATTTATGCATGGCGAA 57.929 34.783 10.16 0.00 0.00 4.70
37 38 5.477510 ACTTTGAATTTATGCATGGCGAAA 58.522 33.333 10.16 1.73 0.00 3.46
38 39 5.348451 ACTTTGAATTTATGCATGGCGAAAC 59.652 36.000 10.16 0.00 0.00 2.78
39 40 4.717233 TGAATTTATGCATGGCGAAACT 57.283 36.364 10.16 0.00 0.00 2.66
40 41 5.826601 TGAATTTATGCATGGCGAAACTA 57.173 34.783 10.16 0.00 0.00 2.24
41 42 6.389830 TGAATTTATGCATGGCGAAACTAT 57.610 33.333 10.16 0.00 0.00 2.12
42 43 6.207928 TGAATTTATGCATGGCGAAACTATG 58.792 36.000 10.16 0.00 40.11 2.23
43 44 5.772825 ATTTATGCATGGCGAAACTATGT 57.227 34.783 10.16 0.00 39.36 2.29
44 45 4.550577 TTATGCATGGCGAAACTATGTG 57.449 40.909 10.16 0.00 39.36 3.21
45 46 2.106477 TGCATGGCGAAACTATGTGA 57.894 45.000 0.00 0.00 39.36 3.58
46 47 2.642427 TGCATGGCGAAACTATGTGAT 58.358 42.857 0.00 0.00 39.36 3.06
47 48 2.355444 TGCATGGCGAAACTATGTGATG 59.645 45.455 0.00 0.00 39.36 3.07
48 49 2.355756 GCATGGCGAAACTATGTGATGT 59.644 45.455 0.00 0.00 39.36 3.06
49 50 3.559655 GCATGGCGAAACTATGTGATGTA 59.440 43.478 0.00 0.00 39.36 2.29
50 51 4.035091 GCATGGCGAAACTATGTGATGTAA 59.965 41.667 0.00 0.00 39.36 2.41
51 52 5.501715 CATGGCGAAACTATGTGATGTAAC 58.498 41.667 0.00 0.00 32.79 2.50
52 53 4.827692 TGGCGAAACTATGTGATGTAACT 58.172 39.130 0.00 0.00 0.00 2.24
53 54 5.968254 TGGCGAAACTATGTGATGTAACTA 58.032 37.500 0.00 0.00 0.00 2.24
54 55 6.399743 TGGCGAAACTATGTGATGTAACTAA 58.600 36.000 0.00 0.00 0.00 2.24
55 56 6.874664 TGGCGAAACTATGTGATGTAACTAAA 59.125 34.615 0.00 0.00 0.00 1.85
56 57 7.148540 TGGCGAAACTATGTGATGTAACTAAAC 60.149 37.037 0.00 0.00 0.00 2.01
57 58 7.178074 GCGAAACTATGTGATGTAACTAAACC 58.822 38.462 0.00 0.00 0.00 3.27
58 59 7.388712 CGAAACTATGTGATGTAACTAAACCG 58.611 38.462 0.00 0.00 0.00 4.44
59 60 7.062605 CGAAACTATGTGATGTAACTAAACCGT 59.937 37.037 0.00 0.00 0.00 4.83
60 61 7.591006 AACTATGTGATGTAACTAAACCGTG 57.409 36.000 0.00 0.00 0.00 4.94
61 62 6.103997 ACTATGTGATGTAACTAAACCGTGG 58.896 40.000 0.00 0.00 0.00 4.94
62 63 4.339872 TGTGATGTAACTAAACCGTGGT 57.660 40.909 0.00 0.00 0.00 4.16
63 64 4.309099 TGTGATGTAACTAAACCGTGGTC 58.691 43.478 0.00 0.00 0.00 4.02
64 65 3.681417 GTGATGTAACTAAACCGTGGTCC 59.319 47.826 0.00 0.00 0.00 4.46
65 66 3.579586 TGATGTAACTAAACCGTGGTCCT 59.420 43.478 0.00 0.00 0.00 3.85
66 67 3.389925 TGTAACTAAACCGTGGTCCTG 57.610 47.619 0.00 0.00 0.00 3.86
67 68 2.964464 TGTAACTAAACCGTGGTCCTGA 59.036 45.455 0.00 0.00 0.00 3.86
68 69 3.579586 TGTAACTAAACCGTGGTCCTGAT 59.420 43.478 0.00 0.00 0.00 2.90
69 70 3.329929 AACTAAACCGTGGTCCTGATC 57.670 47.619 0.00 0.00 0.00 2.92
70 71 2.537143 ACTAAACCGTGGTCCTGATCT 58.463 47.619 0.00 0.00 0.00 2.75
71 72 3.705051 ACTAAACCGTGGTCCTGATCTA 58.295 45.455 0.00 0.00 0.00 1.98
72 73 3.700038 ACTAAACCGTGGTCCTGATCTAG 59.300 47.826 0.00 0.00 0.00 2.43
73 74 0.824759 AACCGTGGTCCTGATCTAGC 59.175 55.000 0.00 0.00 0.00 3.42
74 75 1.360551 CCGTGGTCCTGATCTAGCG 59.639 63.158 0.00 0.00 0.00 4.26
75 76 1.384989 CCGTGGTCCTGATCTAGCGT 61.385 60.000 0.00 0.00 0.00 5.07
76 77 1.306148 CGTGGTCCTGATCTAGCGTA 58.694 55.000 0.00 0.00 0.00 4.42
77 78 1.264557 CGTGGTCCTGATCTAGCGTAG 59.735 57.143 0.00 0.00 0.00 3.51
78 79 2.573369 GTGGTCCTGATCTAGCGTAGA 58.427 52.381 0.00 0.00 39.50 2.59
99 100 8.893884 CGTAGATCGCTCTAGTTAATTAGTTTG 58.106 37.037 5.06 0.00 34.63 2.93
100 101 9.182933 GTAGATCGCTCTAGTTAATTAGTTTGG 57.817 37.037 5.06 0.00 34.63 3.28
101 102 7.210873 AGATCGCTCTAGTTAATTAGTTTGGG 58.789 38.462 5.06 5.83 0.00 4.12
102 103 6.290294 TCGCTCTAGTTAATTAGTTTGGGT 57.710 37.500 5.06 0.00 0.00 4.51
103 104 7.408756 TCGCTCTAGTTAATTAGTTTGGGTA 57.591 36.000 5.06 0.00 0.00 3.69
104 105 8.015185 TCGCTCTAGTTAATTAGTTTGGGTAT 57.985 34.615 5.06 0.00 0.00 2.73
105 106 7.924412 TCGCTCTAGTTAATTAGTTTGGGTATG 59.076 37.037 5.06 0.00 0.00 2.39
106 107 7.924412 CGCTCTAGTTAATTAGTTTGGGTATGA 59.076 37.037 5.06 0.00 0.00 2.15
107 108 9.262358 GCTCTAGTTAATTAGTTTGGGTATGAG 57.738 37.037 5.06 0.00 0.00 2.90
108 109 9.765795 CTCTAGTTAATTAGTTTGGGTATGAGG 57.234 37.037 5.06 0.00 0.00 3.86
109 110 9.496710 TCTAGTTAATTAGTTTGGGTATGAGGA 57.503 33.333 5.06 0.00 0.00 3.71
111 112 8.803397 AGTTAATTAGTTTGGGTATGAGGAAC 57.197 34.615 0.00 0.00 0.00 3.62
113 114 9.239551 GTTAATTAGTTTGGGTATGAGGAACTT 57.760 33.333 0.00 0.00 41.55 2.66
114 115 9.816787 TTAATTAGTTTGGGTATGAGGAACTTT 57.183 29.630 0.00 0.00 41.55 2.66
115 116 7.703058 ATTAGTTTGGGTATGAGGAACTTTG 57.297 36.000 0.00 0.00 41.55 2.77
116 117 5.061721 AGTTTGGGTATGAGGAACTTTGT 57.938 39.130 0.00 0.00 41.55 2.83
117 118 5.070685 AGTTTGGGTATGAGGAACTTTGTC 58.929 41.667 0.00 0.00 41.55 3.18
118 119 3.328382 TGGGTATGAGGAACTTTGTCG 57.672 47.619 0.00 0.00 41.55 4.35
119 120 2.635915 TGGGTATGAGGAACTTTGTCGT 59.364 45.455 0.00 0.00 41.55 4.34
120 121 3.071892 TGGGTATGAGGAACTTTGTCGTT 59.928 43.478 0.00 0.00 41.55 3.85
121 122 4.070009 GGGTATGAGGAACTTTGTCGTTT 58.930 43.478 0.00 0.00 41.55 3.60
122 123 5.221682 TGGGTATGAGGAACTTTGTCGTTTA 60.222 40.000 0.00 0.00 41.55 2.01
123 124 5.878669 GGGTATGAGGAACTTTGTCGTTTAT 59.121 40.000 0.00 0.00 41.55 1.40
124 125 6.183360 GGGTATGAGGAACTTTGTCGTTTATG 60.183 42.308 0.00 0.00 41.55 1.90
125 126 6.370718 GGTATGAGGAACTTTGTCGTTTATGT 59.629 38.462 0.00 0.00 41.55 2.29
126 127 6.877611 ATGAGGAACTTTGTCGTTTATGTT 57.122 33.333 0.00 0.00 41.55 2.71
127 128 6.687081 TGAGGAACTTTGTCGTTTATGTTT 57.313 33.333 0.00 0.00 41.55 2.83
128 129 7.789273 TGAGGAACTTTGTCGTTTATGTTTA 57.211 32.000 0.00 0.00 41.55 2.01
129 130 7.632721 TGAGGAACTTTGTCGTTTATGTTTAC 58.367 34.615 0.00 0.00 41.55 2.01
130 131 7.496591 TGAGGAACTTTGTCGTTTATGTTTACT 59.503 33.333 0.00 0.00 41.55 2.24
131 132 8.891671 AGGAACTTTGTCGTTTATGTTTACTA 57.108 30.769 0.00 0.00 27.25 1.82
132 133 9.498176 AGGAACTTTGTCGTTTATGTTTACTAT 57.502 29.630 0.00 0.00 27.25 2.12
135 136 9.887406 AACTTTGTCGTTTATGTTTACTATTGG 57.113 29.630 0.00 0.00 0.00 3.16
136 137 9.059260 ACTTTGTCGTTTATGTTTACTATTGGT 57.941 29.630 0.00 0.00 0.00 3.67
137 138 9.887406 CTTTGTCGTTTATGTTTACTATTGGTT 57.113 29.630 0.00 0.00 0.00 3.67
138 139 9.666626 TTTGTCGTTTATGTTTACTATTGGTTG 57.333 29.630 0.00 0.00 0.00 3.77
139 140 7.299586 TGTCGTTTATGTTTACTATTGGTTGC 58.700 34.615 0.00 0.00 0.00 4.17
140 141 7.173562 TGTCGTTTATGTTTACTATTGGTTGCT 59.826 33.333 0.00 0.00 0.00 3.91
141 142 8.019094 GTCGTTTATGTTTACTATTGGTTGCTT 58.981 33.333 0.00 0.00 0.00 3.91
142 143 8.018520 TCGTTTATGTTTACTATTGGTTGCTTG 58.981 33.333 0.00 0.00 0.00 4.01
143 144 7.806014 CGTTTATGTTTACTATTGGTTGCTTGT 59.194 33.333 0.00 0.00 0.00 3.16
149 150 9.469807 TGTTTACTATTGGTTGCTTGTATTTTG 57.530 29.630 0.00 0.00 0.00 2.44
150 151 8.432359 GTTTACTATTGGTTGCTTGTATTTTGC 58.568 33.333 0.00 0.00 0.00 3.68
151 152 6.345096 ACTATTGGTTGCTTGTATTTTGCT 57.655 33.333 0.00 0.00 0.00 3.91
152 153 7.461182 ACTATTGGTTGCTTGTATTTTGCTA 57.539 32.000 0.00 0.00 0.00 3.49
153 154 7.891561 ACTATTGGTTGCTTGTATTTTGCTAA 58.108 30.769 0.00 0.00 0.00 3.09
154 155 8.531146 ACTATTGGTTGCTTGTATTTTGCTAAT 58.469 29.630 0.00 0.00 0.00 1.73
155 156 9.369904 CTATTGGTTGCTTGTATTTTGCTAATT 57.630 29.630 0.00 0.00 0.00 1.40
157 158 9.889128 ATTGGTTGCTTGTATTTTGCTAATTAT 57.111 25.926 0.00 0.00 0.00 1.28
158 159 8.700722 TGGTTGCTTGTATTTTGCTAATTATG 57.299 30.769 0.00 0.00 0.00 1.90
159 160 7.277539 TGGTTGCTTGTATTTTGCTAATTATGC 59.722 33.333 0.00 0.00 0.00 3.14
160 161 7.254421 GGTTGCTTGTATTTTGCTAATTATGCC 60.254 37.037 4.99 0.00 0.00 4.40
161 162 7.111247 TGCTTGTATTTTGCTAATTATGCCT 57.889 32.000 4.99 0.00 0.00 4.75
162 163 7.202526 TGCTTGTATTTTGCTAATTATGCCTC 58.797 34.615 4.99 0.00 0.00 4.70
163 164 6.642540 GCTTGTATTTTGCTAATTATGCCTCC 59.357 38.462 4.99 0.00 0.00 4.30
164 165 7.470563 GCTTGTATTTTGCTAATTATGCCTCCT 60.471 37.037 4.99 0.00 0.00 3.69
165 166 7.896383 TGTATTTTGCTAATTATGCCTCCTT 57.104 32.000 4.99 0.00 0.00 3.36
166 167 7.715657 TGTATTTTGCTAATTATGCCTCCTTG 58.284 34.615 4.99 0.00 0.00 3.61
167 168 6.796785 ATTTTGCTAATTATGCCTCCTTGT 57.203 33.333 4.99 0.00 0.00 3.16
168 169 6.603940 TTTTGCTAATTATGCCTCCTTGTT 57.396 33.333 4.99 0.00 0.00 2.83
169 170 6.603940 TTTGCTAATTATGCCTCCTTGTTT 57.396 33.333 4.99 0.00 0.00 2.83
170 171 6.603940 TTGCTAATTATGCCTCCTTGTTTT 57.396 33.333 4.99 0.00 0.00 2.43
171 172 6.207691 TGCTAATTATGCCTCCTTGTTTTC 57.792 37.500 4.99 0.00 0.00 2.29
172 173 5.951747 TGCTAATTATGCCTCCTTGTTTTCT 59.048 36.000 4.99 0.00 0.00 2.52
173 174 6.437162 TGCTAATTATGCCTCCTTGTTTTCTT 59.563 34.615 4.99 0.00 0.00 2.52
174 175 7.613801 TGCTAATTATGCCTCCTTGTTTTCTTA 59.386 33.333 4.99 0.00 0.00 2.10
175 176 8.466798 GCTAATTATGCCTCCTTGTTTTCTTAA 58.533 33.333 0.00 0.00 0.00 1.85
177 178 8.422577 AATTATGCCTCCTTGTTTTCTTAAGT 57.577 30.769 1.63 0.00 0.00 2.24
178 179 9.528489 AATTATGCCTCCTTGTTTTCTTAAGTA 57.472 29.630 1.63 0.00 0.00 2.24
179 180 6.819397 ATGCCTCCTTGTTTTCTTAAGTAC 57.181 37.500 1.63 0.82 0.00 2.73
180 181 5.686753 TGCCTCCTTGTTTTCTTAAGTACA 58.313 37.500 1.63 3.39 0.00 2.90
181 182 6.303839 TGCCTCCTTGTTTTCTTAAGTACAT 58.696 36.000 1.63 0.00 0.00 2.29
182 183 6.775629 TGCCTCCTTGTTTTCTTAAGTACATT 59.224 34.615 1.63 0.00 0.00 2.71
183 184 7.940137 TGCCTCCTTGTTTTCTTAAGTACATTA 59.060 33.333 1.63 0.00 0.00 1.90
184 185 8.957466 GCCTCCTTGTTTTCTTAAGTACATTAT 58.043 33.333 1.63 0.00 0.00 1.28
209 210 9.970395 ATGTTGCATATTATCGTTCAATTCATT 57.030 25.926 0.00 0.00 0.00 2.57
218 219 6.961359 ATCGTTCAATTCATTAACTCACGA 57.039 33.333 0.00 0.00 38.39 4.35
219 220 6.961359 TCGTTCAATTCATTAACTCACGAT 57.039 33.333 0.00 0.00 0.00 3.73
220 221 6.761117 TCGTTCAATTCATTAACTCACGATG 58.239 36.000 0.00 0.00 0.00 3.84
221 222 5.449113 CGTTCAATTCATTAACTCACGATGC 59.551 40.000 0.00 0.00 0.00 3.91
222 223 6.314018 GTTCAATTCATTAACTCACGATGCA 58.686 36.000 0.00 0.00 0.00 3.96
223 224 6.110543 TCAATTCATTAACTCACGATGCAG 57.889 37.500 0.00 0.00 0.00 4.41
224 225 5.065090 TCAATTCATTAACTCACGATGCAGG 59.935 40.000 0.00 0.00 0.00 4.85
225 226 3.610040 TCATTAACTCACGATGCAGGT 57.390 42.857 0.00 0.00 0.00 4.00
226 227 4.729227 TCATTAACTCACGATGCAGGTA 57.271 40.909 0.00 0.00 0.00 3.08
227 228 4.430007 TCATTAACTCACGATGCAGGTAC 58.570 43.478 0.00 0.00 0.00 3.34
228 229 3.945981 TTAACTCACGATGCAGGTACA 57.054 42.857 0.00 0.00 0.00 2.90
229 230 4.465632 TTAACTCACGATGCAGGTACAT 57.534 40.909 0.00 0.00 0.00 2.29
230 231 5.585820 TTAACTCACGATGCAGGTACATA 57.414 39.130 0.00 0.00 0.00 2.29
231 232 3.717400 ACTCACGATGCAGGTACATAG 57.283 47.619 0.00 0.00 0.00 2.23
232 233 3.288092 ACTCACGATGCAGGTACATAGA 58.712 45.455 0.00 0.00 0.00 1.98
233 234 3.891977 ACTCACGATGCAGGTACATAGAT 59.108 43.478 0.00 0.00 0.00 1.98
234 235 4.022762 ACTCACGATGCAGGTACATAGATC 60.023 45.833 0.00 0.00 0.00 2.75
235 236 3.888930 TCACGATGCAGGTACATAGATCA 59.111 43.478 0.00 0.00 0.00 2.92
236 237 4.022849 TCACGATGCAGGTACATAGATCAG 60.023 45.833 0.00 0.00 0.00 2.90
237 238 4.022849 CACGATGCAGGTACATAGATCAGA 60.023 45.833 0.00 0.00 0.00 3.27
238 239 4.217334 ACGATGCAGGTACATAGATCAGAG 59.783 45.833 0.00 0.00 0.00 3.35
239 240 4.457257 CGATGCAGGTACATAGATCAGAGA 59.543 45.833 0.00 0.00 0.00 3.10
240 241 5.125257 CGATGCAGGTACATAGATCAGAGAT 59.875 44.000 0.00 0.00 0.00 2.75
241 242 5.718724 TGCAGGTACATAGATCAGAGATG 57.281 43.478 0.00 0.00 0.00 2.90
242 243 4.525874 TGCAGGTACATAGATCAGAGATGG 59.474 45.833 0.00 0.00 0.00 3.51
243 244 4.620332 GCAGGTACATAGATCAGAGATGGC 60.620 50.000 0.00 0.00 0.00 4.40
244 245 3.761218 AGGTACATAGATCAGAGATGGCG 59.239 47.826 0.00 0.00 0.00 5.69
245 246 3.759086 GGTACATAGATCAGAGATGGCGA 59.241 47.826 0.00 0.00 0.00 5.54
246 247 4.218635 GGTACATAGATCAGAGATGGCGAA 59.781 45.833 0.00 0.00 0.00 4.70
247 248 4.517952 ACATAGATCAGAGATGGCGAAG 57.482 45.455 0.00 0.00 0.00 3.79
248 249 3.257873 ACATAGATCAGAGATGGCGAAGG 59.742 47.826 0.00 0.00 0.00 3.46
249 250 2.079170 AGATCAGAGATGGCGAAGGA 57.921 50.000 0.00 0.00 0.00 3.36
250 251 1.686052 AGATCAGAGATGGCGAAGGAC 59.314 52.381 0.00 0.00 0.00 3.85
251 252 1.686052 GATCAGAGATGGCGAAGGACT 59.314 52.381 0.00 0.00 0.00 3.85
252 253 2.437085 TCAGAGATGGCGAAGGACTA 57.563 50.000 0.00 0.00 0.00 2.59
253 254 2.025155 TCAGAGATGGCGAAGGACTAC 58.975 52.381 0.00 0.00 0.00 2.73
254 255 2.028130 CAGAGATGGCGAAGGACTACT 58.972 52.381 0.00 0.00 0.00 2.57
255 256 3.118000 TCAGAGATGGCGAAGGACTACTA 60.118 47.826 0.00 0.00 0.00 1.82
256 257 3.823873 CAGAGATGGCGAAGGACTACTAT 59.176 47.826 0.00 0.00 0.00 2.12
257 258 3.823873 AGAGATGGCGAAGGACTACTATG 59.176 47.826 0.00 0.00 0.00 2.23
258 259 2.297597 AGATGGCGAAGGACTACTATGC 59.702 50.000 0.00 0.00 0.00 3.14
259 260 0.750850 TGGCGAAGGACTACTATGCC 59.249 55.000 0.00 0.00 45.22 4.40
260 261 0.318784 GGCGAAGGACTACTATGCCG 60.319 60.000 0.00 0.00 39.08 5.69
261 262 0.384669 GCGAAGGACTACTATGCCGT 59.615 55.000 0.00 0.00 0.00 5.68
262 263 1.864435 GCGAAGGACTACTATGCCGTG 60.864 57.143 0.00 0.00 0.00 4.94
263 264 1.404391 CGAAGGACTACTATGCCGTGT 59.596 52.381 0.00 0.00 0.00 4.49
264 265 2.615447 CGAAGGACTACTATGCCGTGTA 59.385 50.000 0.00 0.00 0.00 2.90
265 266 3.547613 CGAAGGACTACTATGCCGTGTAC 60.548 52.174 0.00 0.00 0.00 2.90
266 267 1.945394 AGGACTACTATGCCGTGTACG 59.055 52.381 0.00 0.00 39.44 3.67
267 268 1.672881 GGACTACTATGCCGTGTACGT 59.327 52.381 3.57 0.00 37.74 3.57
268 269 2.098117 GGACTACTATGCCGTGTACGTT 59.902 50.000 0.00 0.00 37.74 3.99
269 270 3.103738 GACTACTATGCCGTGTACGTTG 58.896 50.000 0.00 0.00 37.74 4.10
270 271 2.159338 ACTACTATGCCGTGTACGTTGG 60.159 50.000 0.00 0.00 37.74 3.77
271 272 0.108520 ACTATGCCGTGTACGTTGGG 60.109 55.000 0.00 0.00 37.74 4.12
272 273 0.173935 CTATGCCGTGTACGTTGGGA 59.826 55.000 0.00 0.00 37.74 4.37
273 274 0.173935 TATGCCGTGTACGTTGGGAG 59.826 55.000 0.00 0.00 37.74 4.30
274 275 1.823169 ATGCCGTGTACGTTGGGAGT 61.823 55.000 0.00 0.00 37.74 3.85
275 276 2.025418 GCCGTGTACGTTGGGAGTG 61.025 63.158 0.00 0.00 37.74 3.51
276 277 1.364901 CCGTGTACGTTGGGAGTGT 59.635 57.895 0.00 0.00 37.74 3.55
277 278 0.249573 CCGTGTACGTTGGGAGTGTT 60.250 55.000 0.00 0.00 37.74 3.32
278 279 1.134226 CGTGTACGTTGGGAGTGTTC 58.866 55.000 0.00 0.00 34.11 3.18
279 280 1.505425 GTGTACGTTGGGAGTGTTCC 58.495 55.000 0.00 0.00 43.23 3.62
280 281 1.121378 TGTACGTTGGGAGTGTTCCA 58.879 50.000 0.00 0.00 45.98 3.53
281 282 1.069513 TGTACGTTGGGAGTGTTCCAG 59.930 52.381 0.00 0.00 45.98 3.86
282 283 0.682852 TACGTTGGGAGTGTTCCAGG 59.317 55.000 0.00 0.00 45.98 4.45
283 284 1.052124 ACGTTGGGAGTGTTCCAGGA 61.052 55.000 0.00 0.00 45.98 3.86
284 285 0.320771 CGTTGGGAGTGTTCCAGGAG 60.321 60.000 0.00 0.00 45.98 3.69
285 286 0.765510 GTTGGGAGTGTTCCAGGAGT 59.234 55.000 0.00 0.00 45.98 3.85
286 287 1.056660 TTGGGAGTGTTCCAGGAGTC 58.943 55.000 0.00 0.00 45.98 3.36
287 288 0.191064 TGGGAGTGTTCCAGGAGTCT 59.809 55.000 0.00 0.00 45.98 3.24
288 289 1.431633 TGGGAGTGTTCCAGGAGTCTA 59.568 52.381 0.00 0.00 45.98 2.59
289 290 1.826096 GGGAGTGTTCCAGGAGTCTAC 59.174 57.143 0.00 0.00 45.98 2.59
290 291 1.473278 GGAGTGTTCCAGGAGTCTACG 59.527 57.143 0.00 0.00 43.45 3.51
291 292 2.434428 GAGTGTTCCAGGAGTCTACGA 58.566 52.381 0.00 0.00 0.00 3.43
292 293 2.161030 AGTGTTCCAGGAGTCTACGAC 58.839 52.381 0.00 0.00 0.00 4.34
293 294 1.201880 GTGTTCCAGGAGTCTACGACC 59.798 57.143 0.00 0.00 32.18 4.79
294 295 1.202964 TGTTCCAGGAGTCTACGACCA 60.203 52.381 0.00 0.00 32.18 4.02
295 296 1.201880 GTTCCAGGAGTCTACGACCAC 59.798 57.143 0.00 0.00 32.18 4.16
296 297 0.697079 TCCAGGAGTCTACGACCACT 59.303 55.000 0.00 0.00 32.18 4.00
297 298 0.811915 CCAGGAGTCTACGACCACTG 59.188 60.000 0.00 7.95 36.91 3.66
298 299 0.811915 CAGGAGTCTACGACCACTGG 59.188 60.000 0.00 0.00 35.01 4.00
299 300 0.966370 AGGAGTCTACGACCACTGGC 60.966 60.000 0.00 0.00 32.18 4.85
300 301 1.511768 GAGTCTACGACCACTGGCC 59.488 63.158 0.00 0.00 32.18 5.36
301 302 1.228769 AGTCTACGACCACTGGCCA 60.229 57.895 4.71 4.71 32.18 5.36
302 303 1.215647 GTCTACGACCACTGGCCAG 59.784 63.158 31.60 31.60 0.00 4.85
303 304 2.125512 CTACGACCACTGGCCAGC 60.126 66.667 33.06 15.27 0.00 4.85
304 305 3.665675 CTACGACCACTGGCCAGCC 62.666 68.421 33.06 17.50 0.00 4.85
323 324 3.957586 CTCAGGCCCAGGTGCACA 61.958 66.667 20.43 0.00 0.00 4.57
324 325 3.914579 CTCAGGCCCAGGTGCACAG 62.915 68.421 20.43 10.43 0.00 3.66
327 328 3.646715 GGCCCAGGTGCACAGGTA 61.647 66.667 20.43 0.00 0.00 3.08
328 329 2.359975 GCCCAGGTGCACAGGTAC 60.360 66.667 20.43 10.16 0.00 3.34
333 334 4.404098 GGTGCACAGGTACCCGGG 62.404 72.222 22.25 22.25 43.33 5.73
334 335 3.633116 GTGCACAGGTACCCGGGT 61.633 66.667 32.66 32.66 0.00 5.28
335 336 3.632080 TGCACAGGTACCCGGGTG 61.632 66.667 36.97 21.82 36.98 4.61
337 338 3.319198 CACAGGTACCCGGGTGCT 61.319 66.667 36.25 21.86 30.09 4.40
338 339 1.985662 CACAGGTACCCGGGTGCTA 60.986 63.158 36.25 16.38 30.09 3.49
339 340 1.684734 ACAGGTACCCGGGTGCTAG 60.685 63.158 36.25 29.62 0.00 3.42
340 341 2.762875 AGGTACCCGGGTGCTAGC 60.763 66.667 36.25 25.92 0.00 3.42
341 342 3.858225 GGTACCCGGGTGCTAGCC 61.858 72.222 36.25 24.32 0.00 3.93
342 343 3.078836 GTACCCGGGTGCTAGCCA 61.079 66.667 36.97 11.79 34.89 4.75
343 344 3.078836 TACCCGGGTGCTAGCCAC 61.079 66.667 36.97 10.31 43.90 5.01
344 345 3.908904 TACCCGGGTGCTAGCCACA 62.909 63.158 36.97 10.03 46.50 4.17
345 346 4.473520 CCCGGGTGCTAGCCACAG 62.474 72.222 14.18 5.60 46.50 3.66
346 347 3.390521 CCGGGTGCTAGCCACAGA 61.391 66.667 13.29 0.00 46.50 3.41
347 348 2.185350 CGGGTGCTAGCCACAGAG 59.815 66.667 13.29 2.59 46.50 3.35
363 364 1.302271 GAGGGTTCGCGGGAGTTTT 60.302 57.895 6.13 0.00 0.00 2.43
407 408 1.069255 GAGAAACCTCGACGGAAAGC 58.931 55.000 7.76 0.00 36.31 3.51
494 495 7.279313 TGTTTATTCGTGCTCTATAAGAAACCC 59.721 37.037 0.00 0.00 34.02 4.11
502 503 4.430908 CTCTATAAGAAACCCGGTGACAC 58.569 47.826 0.00 0.00 0.00 3.67
503 504 2.088950 ATAAGAAACCCGGTGACACG 57.911 50.000 0.00 0.00 0.00 4.49
564 572 2.476821 CGACATACCATAACGGGGAAC 58.523 52.381 0.00 0.00 40.22 3.62
596 604 0.721483 CGGTTCGCAAGCGTTTCTTC 60.721 55.000 14.57 0.63 46.38 2.87
608 616 0.693049 GTTTCTTCCTCCTCCTGGCA 59.307 55.000 0.00 0.00 0.00 4.92
658 666 2.622942 TGGTTCGCAAGCATTTCTTTCT 59.377 40.909 0.00 0.00 33.29 2.52
688 699 0.317938 GGAATCACGGGATCTCGACG 60.318 60.000 24.50 12.49 31.88 5.12
697 708 1.386533 GGATCTCGACGGTAAGTGGA 58.613 55.000 0.00 0.00 36.18 4.02
729 743 3.032609 GCGATCCGACGGCTCATG 61.033 66.667 17.26 3.70 0.00 3.07
845 866 0.405973 AACAGGGGAAAAGAGGCCTC 59.594 55.000 26.22 26.22 0.00 4.70
874 918 2.540516 CACAACGTAACACAATCCGACA 59.459 45.455 0.00 0.00 0.00 4.35
966 1010 1.693152 CCGCCCCTAAACCCTAGACC 61.693 65.000 0.00 0.00 0.00 3.85
991 1035 1.007618 GGAATCGATCGACCGACCC 60.008 63.158 22.06 5.19 41.70 4.46
1104 1148 2.452114 CCCACCACCTCCCTCTCT 59.548 66.667 0.00 0.00 0.00 3.10
1131 1175 1.218316 GACCAAGAAGATCGCCCGT 59.782 57.895 0.00 0.00 0.00 5.28
1136 1180 3.834799 GAAGATCGCCCGTCCGGT 61.835 66.667 0.00 0.00 0.00 5.28
1455 1502 2.509916 CTCCTCATCTGGCTGCCC 59.490 66.667 17.53 0.00 0.00 5.36
1591 1638 2.237965 CCCAACCACCATCCCTCCA 61.238 63.158 0.00 0.00 0.00 3.86
1593 1640 1.767036 CAACCACCATCCCTCCACA 59.233 57.895 0.00 0.00 0.00 4.17
1687 1754 1.154525 CAAGAGCAAGCTTCGCGTG 60.155 57.895 5.77 1.17 40.71 5.34
1732 1799 2.265739 CTTGCTGACGGGCTGCTA 59.734 61.111 14.07 5.48 41.53 3.49
1739 1806 1.869767 CTGACGGGCTGCTAATCAATC 59.130 52.381 0.00 0.00 0.00 2.67
1776 1843 3.849527 TCAAGATAGCAGAGGCCTGATA 58.150 45.455 12.00 0.00 44.30 2.15
1861 1928 2.673368 CCAAATCGGCAGTGAGAACTAC 59.327 50.000 0.00 0.00 0.00 2.73
1881 1948 5.942236 ACTACCGTACAGATGTCTGAGTTAA 59.058 40.000 16.41 0.00 46.59 2.01
1924 1991 6.737254 TTGGTTTCAGTTTCGATTCCTATC 57.263 37.500 0.00 0.00 0.00 2.08
1936 2006 9.429359 GTTTCGATTCCTATCTATGTTGATCAT 57.571 33.333 0.00 0.00 40.25 2.45
1984 2059 8.288208 GTGAATGATCCTGCTTATACAATCTTG 58.712 37.037 0.00 0.00 0.00 3.02
1991 2066 5.006746 CCTGCTTATACAATCTTGTCGGTTC 59.993 44.000 0.00 0.00 42.35 3.62
2026 2903 1.106285 ATCCCGCTTGAGGAATTTGC 58.894 50.000 0.00 0.00 36.85 3.68
2079 2956 4.323409 GCCTCTGTTTCCTGAATCTTCTCT 60.323 45.833 0.00 0.00 0.00 3.10
2098 2975 7.497249 TCTTCTCTATTGAAAGCTATTCTTGGC 59.503 37.037 9.17 0.00 34.67 4.52
2161 3038 4.838423 TCCTCTGTTGATCAGTCCAGTTTA 59.162 41.667 14.86 3.95 43.97 2.01
2168 3045 6.014242 TGTTGATCAGTCCAGTTTAGATCTGT 60.014 38.462 5.18 0.00 36.82 3.41
2182 3063 4.205065 AGATCTGTTCCTGCTTGAAGAG 57.795 45.455 0.00 6.61 37.07 2.85
2250 3132 8.615878 TCGAATTTTCATCACTCTTTCCTTAA 57.384 30.769 0.00 0.00 0.00 1.85
2264 3150 9.136323 ACTCTTTCCTTAATGTTTCAGTTCATT 57.864 29.630 0.00 0.00 37.85 2.57
2324 3213 5.106987 GCAAATACTGGCCAAGTTTTGAATG 60.107 40.000 26.21 15.35 40.56 2.67
2338 3227 7.172868 AGTTTTGAATGGCATGATCATGTTA 57.827 32.000 31.09 22.10 40.80 2.41
2339 3228 7.037438 AGTTTTGAATGGCATGATCATGTTAC 58.963 34.615 31.09 22.70 40.80 2.50
2341 3230 3.565063 TGAATGGCATGATCATGTTACCG 59.435 43.478 31.09 10.34 40.80 4.02
2377 3266 7.293402 ACAATTCAAACACATTTGTCACAAG 57.707 32.000 0.00 0.00 44.76 3.16
2434 3327 3.563808 TCTTGATTGTAAGCGTTGCACTT 59.436 39.130 0.00 0.00 0.00 3.16
2437 3330 4.778904 TGATTGTAAGCGTTGCACTTAAC 58.221 39.130 0.00 0.00 31.68 2.01
2487 3380 9.128404 CATTCAGAATCAGATAAAAATCTGGGA 57.872 33.333 13.81 0.00 46.02 4.37
2510 3403 1.493772 CGCACACTCGGTTCAGTTTA 58.506 50.000 0.00 0.00 0.00 2.01
2560 3455 2.814336 GCTTTCAGTTTTGATCTCCGGT 59.186 45.455 0.00 0.00 32.27 5.28
2580 3475 5.300752 CGGTGATCCTGCTTATACAATCTT 58.699 41.667 0.00 0.00 0.00 2.40
2588 3483 8.178313 TCCTGCTTATACAATCTTCTCGATTA 57.822 34.615 0.00 0.00 40.33 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.093307 TGCATAAATTCAAAGTTTTGCCATAGA 58.907 29.630 13.15 0.00 38.05 1.98
4 5 8.254178 TGCATAAATTCAAAGTTTTGCCATAG 57.746 30.769 13.15 0.00 38.05 2.23
6 7 7.362229 CCATGCATAAATTCAAAGTTTTGCCAT 60.362 33.333 13.15 6.66 38.05 4.40
7 8 6.072618 CCATGCATAAATTCAAAGTTTTGCCA 60.073 34.615 13.15 5.14 38.05 4.92
8 9 6.316319 CCATGCATAAATTCAAAGTTTTGCC 58.684 36.000 13.15 0.91 38.05 4.52
9 10 5.796437 GCCATGCATAAATTCAAAGTTTTGC 59.204 36.000 0.00 10.14 38.05 3.68
10 11 6.016718 CGCCATGCATAAATTCAAAGTTTTG 58.983 36.000 0.00 0.00 39.48 2.44
11 12 5.931146 TCGCCATGCATAAATTCAAAGTTTT 59.069 32.000 0.00 0.00 0.00 2.43
12 13 5.477510 TCGCCATGCATAAATTCAAAGTTT 58.522 33.333 0.00 0.00 0.00 2.66
13 14 5.070770 TCGCCATGCATAAATTCAAAGTT 57.929 34.783 0.00 0.00 0.00 2.66
14 15 4.717233 TCGCCATGCATAAATTCAAAGT 57.283 36.364 0.00 0.00 0.00 2.66
15 16 5.577945 AGTTTCGCCATGCATAAATTCAAAG 59.422 36.000 0.00 0.00 0.00 2.77
16 17 5.477510 AGTTTCGCCATGCATAAATTCAAA 58.522 33.333 0.00 0.00 0.00 2.69
17 18 5.070770 AGTTTCGCCATGCATAAATTCAA 57.929 34.783 0.00 0.00 0.00 2.69
18 19 4.717233 AGTTTCGCCATGCATAAATTCA 57.283 36.364 0.00 0.00 0.00 2.57
19 20 6.142798 CACATAGTTTCGCCATGCATAAATTC 59.857 38.462 0.00 0.00 0.00 2.17
20 21 5.978919 CACATAGTTTCGCCATGCATAAATT 59.021 36.000 0.00 0.00 0.00 1.82
21 22 5.299028 TCACATAGTTTCGCCATGCATAAAT 59.701 36.000 0.00 0.00 0.00 1.40
22 23 4.637977 TCACATAGTTTCGCCATGCATAAA 59.362 37.500 0.00 0.00 0.00 1.40
23 24 4.195416 TCACATAGTTTCGCCATGCATAA 58.805 39.130 0.00 0.00 0.00 1.90
24 25 3.802866 TCACATAGTTTCGCCATGCATA 58.197 40.909 0.00 0.00 0.00 3.14
25 26 2.642427 TCACATAGTTTCGCCATGCAT 58.358 42.857 0.00 0.00 0.00 3.96
26 27 2.106477 TCACATAGTTTCGCCATGCA 57.894 45.000 0.00 0.00 0.00 3.96
27 28 2.355756 ACATCACATAGTTTCGCCATGC 59.644 45.455 0.00 0.00 0.00 4.06
28 29 5.294306 AGTTACATCACATAGTTTCGCCATG 59.706 40.000 0.00 0.00 0.00 3.66
29 30 5.428253 AGTTACATCACATAGTTTCGCCAT 58.572 37.500 0.00 0.00 0.00 4.40
30 31 4.827692 AGTTACATCACATAGTTTCGCCA 58.172 39.130 0.00 0.00 0.00 5.69
31 32 6.897259 TTAGTTACATCACATAGTTTCGCC 57.103 37.500 0.00 0.00 0.00 5.54
32 33 7.178074 GGTTTAGTTACATCACATAGTTTCGC 58.822 38.462 0.00 0.00 0.00 4.70
33 34 7.062605 ACGGTTTAGTTACATCACATAGTTTCG 59.937 37.037 0.00 0.00 0.00 3.46
34 35 8.166706 CACGGTTTAGTTACATCACATAGTTTC 58.833 37.037 0.00 0.00 0.00 2.78
35 36 7.118680 CCACGGTTTAGTTACATCACATAGTTT 59.881 37.037 0.00 0.00 0.00 2.66
36 37 6.592607 CCACGGTTTAGTTACATCACATAGTT 59.407 38.462 0.00 0.00 0.00 2.24
37 38 6.103997 CCACGGTTTAGTTACATCACATAGT 58.896 40.000 0.00 0.00 0.00 2.12
38 39 6.103997 ACCACGGTTTAGTTACATCACATAG 58.896 40.000 0.00 0.00 0.00 2.23
39 40 6.040209 ACCACGGTTTAGTTACATCACATA 57.960 37.500 0.00 0.00 0.00 2.29
40 41 4.901868 ACCACGGTTTAGTTACATCACAT 58.098 39.130 0.00 0.00 0.00 3.21
41 42 4.309099 GACCACGGTTTAGTTACATCACA 58.691 43.478 0.00 0.00 0.00 3.58
42 43 3.681417 GGACCACGGTTTAGTTACATCAC 59.319 47.826 0.00 0.00 0.00 3.06
43 44 3.579586 AGGACCACGGTTTAGTTACATCA 59.420 43.478 0.00 0.00 0.00 3.07
44 45 3.930848 CAGGACCACGGTTTAGTTACATC 59.069 47.826 0.00 0.00 0.00 3.06
45 46 3.579586 TCAGGACCACGGTTTAGTTACAT 59.420 43.478 0.00 0.00 0.00 2.29
46 47 2.964464 TCAGGACCACGGTTTAGTTACA 59.036 45.455 0.00 0.00 0.00 2.41
47 48 3.665745 TCAGGACCACGGTTTAGTTAC 57.334 47.619 0.00 0.00 0.00 2.50
48 49 4.091549 AGATCAGGACCACGGTTTAGTTA 58.908 43.478 0.00 0.00 0.00 2.24
49 50 2.904434 AGATCAGGACCACGGTTTAGTT 59.096 45.455 0.00 0.00 0.00 2.24
50 51 2.537143 AGATCAGGACCACGGTTTAGT 58.463 47.619 0.00 0.00 0.00 2.24
51 52 3.491104 GCTAGATCAGGACCACGGTTTAG 60.491 52.174 0.00 0.00 0.00 1.85
52 53 2.429610 GCTAGATCAGGACCACGGTTTA 59.570 50.000 0.00 0.00 0.00 2.01
53 54 1.207329 GCTAGATCAGGACCACGGTTT 59.793 52.381 0.00 0.00 0.00 3.27
54 55 0.824759 GCTAGATCAGGACCACGGTT 59.175 55.000 0.00 0.00 0.00 4.44
55 56 1.384989 CGCTAGATCAGGACCACGGT 61.385 60.000 0.00 0.00 0.00 4.83
56 57 1.360551 CGCTAGATCAGGACCACGG 59.639 63.158 0.00 0.00 0.00 4.94
57 58 1.264557 CTACGCTAGATCAGGACCACG 59.735 57.143 0.00 0.00 0.00 4.94
58 59 2.573369 TCTACGCTAGATCAGGACCAC 58.427 52.381 0.00 0.00 0.00 4.16
59 60 3.510531 ATCTACGCTAGATCAGGACCA 57.489 47.619 0.00 0.00 41.55 4.02
73 74 8.893884 CAAACTAATTAACTAGAGCGATCTACG 58.106 37.037 6.25 6.01 45.66 3.51
74 75 9.182933 CCAAACTAATTAACTAGAGCGATCTAC 57.817 37.037 6.25 0.00 0.00 2.59
75 76 8.358148 CCCAAACTAATTAACTAGAGCGATCTA 58.642 37.037 10.44 10.44 0.00 1.98
76 77 7.147707 ACCCAAACTAATTAACTAGAGCGATCT 60.148 37.037 8.83 8.83 0.00 2.75
77 78 6.985059 ACCCAAACTAATTAACTAGAGCGATC 59.015 38.462 0.00 0.00 0.00 3.69
78 79 6.885922 ACCCAAACTAATTAACTAGAGCGAT 58.114 36.000 0.00 0.00 0.00 4.58
79 80 6.290294 ACCCAAACTAATTAACTAGAGCGA 57.710 37.500 0.00 0.00 0.00 4.93
80 81 7.924412 TCATACCCAAACTAATTAACTAGAGCG 59.076 37.037 0.00 0.00 0.00 5.03
81 82 9.262358 CTCATACCCAAACTAATTAACTAGAGC 57.738 37.037 0.00 0.00 0.00 4.09
82 83 9.765795 CCTCATACCCAAACTAATTAACTAGAG 57.234 37.037 0.00 0.00 0.00 2.43
83 84 9.496710 TCCTCATACCCAAACTAATTAACTAGA 57.503 33.333 0.00 0.00 0.00 2.43
85 86 9.895138 GTTCCTCATACCCAAACTAATTAACTA 57.105 33.333 0.00 0.00 0.00 2.24
86 87 8.612145 AGTTCCTCATACCCAAACTAATTAACT 58.388 33.333 0.00 0.00 0.00 2.24
87 88 8.803397 AGTTCCTCATACCCAAACTAATTAAC 57.197 34.615 0.00 0.00 0.00 2.01
88 89 9.816787 AAAGTTCCTCATACCCAAACTAATTAA 57.183 29.630 0.00 0.00 30.37 1.40
89 90 9.238368 CAAAGTTCCTCATACCCAAACTAATTA 57.762 33.333 0.00 0.00 30.37 1.40
90 91 7.728532 ACAAAGTTCCTCATACCCAAACTAATT 59.271 33.333 0.00 0.00 30.37 1.40
91 92 7.238710 ACAAAGTTCCTCATACCCAAACTAAT 58.761 34.615 0.00 0.00 30.37 1.73
92 93 6.607019 ACAAAGTTCCTCATACCCAAACTAA 58.393 36.000 0.00 0.00 30.37 2.24
93 94 6.195600 ACAAAGTTCCTCATACCCAAACTA 57.804 37.500 0.00 0.00 30.37 2.24
94 95 5.061721 ACAAAGTTCCTCATACCCAAACT 57.938 39.130 0.00 0.00 0.00 2.66
95 96 4.083484 CGACAAAGTTCCTCATACCCAAAC 60.083 45.833 0.00 0.00 0.00 2.93
96 97 4.069304 CGACAAAGTTCCTCATACCCAAA 58.931 43.478 0.00 0.00 0.00 3.28
97 98 3.071892 ACGACAAAGTTCCTCATACCCAA 59.928 43.478 0.00 0.00 0.00 4.12
98 99 2.635915 ACGACAAAGTTCCTCATACCCA 59.364 45.455 0.00 0.00 0.00 4.51
99 100 3.329929 ACGACAAAGTTCCTCATACCC 57.670 47.619 0.00 0.00 0.00 3.69
100 101 6.370718 ACATAAACGACAAAGTTCCTCATACC 59.629 38.462 0.00 0.00 32.43 2.73
101 102 7.360575 ACATAAACGACAAAGTTCCTCATAC 57.639 36.000 0.00 0.00 32.43 2.39
102 103 7.972832 AACATAAACGACAAAGTTCCTCATA 57.027 32.000 0.00 0.00 32.43 2.15
103 104 6.877611 AACATAAACGACAAAGTTCCTCAT 57.122 33.333 0.00 0.00 32.43 2.90
104 105 6.687081 AAACATAAACGACAAAGTTCCTCA 57.313 33.333 0.00 0.00 32.43 3.86
105 106 7.858583 AGTAAACATAAACGACAAAGTTCCTC 58.141 34.615 0.00 0.00 32.43 3.71
106 107 7.797038 AGTAAACATAAACGACAAAGTTCCT 57.203 32.000 0.00 0.00 32.43 3.36
109 110 9.887406 CCAATAGTAAACATAAACGACAAAGTT 57.113 29.630 0.00 0.00 35.59 2.66
110 111 9.059260 ACCAATAGTAAACATAAACGACAAAGT 57.941 29.630 0.00 0.00 0.00 2.66
111 112 9.887406 AACCAATAGTAAACATAAACGACAAAG 57.113 29.630 0.00 0.00 0.00 2.77
112 113 9.666626 CAACCAATAGTAAACATAAACGACAAA 57.333 29.630 0.00 0.00 0.00 2.83
113 114 7.804129 GCAACCAATAGTAAACATAAACGACAA 59.196 33.333 0.00 0.00 0.00 3.18
114 115 7.173562 AGCAACCAATAGTAAACATAAACGACA 59.826 33.333 0.00 0.00 0.00 4.35
115 116 7.524065 AGCAACCAATAGTAAACATAAACGAC 58.476 34.615 0.00 0.00 0.00 4.34
116 117 7.675962 AGCAACCAATAGTAAACATAAACGA 57.324 32.000 0.00 0.00 0.00 3.85
117 118 7.806014 ACAAGCAACCAATAGTAAACATAAACG 59.194 33.333 0.00 0.00 0.00 3.60
123 124 9.469807 CAAAATACAAGCAACCAATAGTAAACA 57.530 29.630 0.00 0.00 0.00 2.83
124 125 8.432359 GCAAAATACAAGCAACCAATAGTAAAC 58.568 33.333 0.00 0.00 0.00 2.01
125 126 8.364142 AGCAAAATACAAGCAACCAATAGTAAA 58.636 29.630 0.00 0.00 0.00 2.01
126 127 7.891561 AGCAAAATACAAGCAACCAATAGTAA 58.108 30.769 0.00 0.00 0.00 2.24
127 128 7.461182 AGCAAAATACAAGCAACCAATAGTA 57.539 32.000 0.00 0.00 0.00 1.82
128 129 6.345096 AGCAAAATACAAGCAACCAATAGT 57.655 33.333 0.00 0.00 0.00 2.12
129 130 8.931385 ATTAGCAAAATACAAGCAACCAATAG 57.069 30.769 0.00 0.00 0.00 1.73
131 132 9.889128 ATAATTAGCAAAATACAAGCAACCAAT 57.111 25.926 0.00 0.00 0.00 3.16
132 133 9.149225 CATAATTAGCAAAATACAAGCAACCAA 57.851 29.630 0.00 0.00 0.00 3.67
133 134 7.277539 GCATAATTAGCAAAATACAAGCAACCA 59.722 33.333 0.00 0.00 0.00 3.67
134 135 7.254421 GGCATAATTAGCAAAATACAAGCAACC 60.254 37.037 8.51 0.00 0.00 3.77
135 136 7.492344 AGGCATAATTAGCAAAATACAAGCAAC 59.508 33.333 8.51 0.00 0.00 4.17
136 137 7.555087 AGGCATAATTAGCAAAATACAAGCAA 58.445 30.769 8.51 0.00 0.00 3.91
137 138 7.111247 AGGCATAATTAGCAAAATACAAGCA 57.889 32.000 8.51 0.00 0.00 3.91
138 139 6.642540 GGAGGCATAATTAGCAAAATACAAGC 59.357 38.462 8.51 0.00 0.00 4.01
139 140 7.945134 AGGAGGCATAATTAGCAAAATACAAG 58.055 34.615 8.51 0.00 0.00 3.16
140 141 7.896383 AGGAGGCATAATTAGCAAAATACAA 57.104 32.000 8.51 0.00 0.00 2.41
141 142 7.341769 ACAAGGAGGCATAATTAGCAAAATACA 59.658 33.333 8.51 0.00 0.00 2.29
142 143 7.716612 ACAAGGAGGCATAATTAGCAAAATAC 58.283 34.615 8.51 0.00 0.00 1.89
143 144 7.896383 ACAAGGAGGCATAATTAGCAAAATA 57.104 32.000 8.51 0.00 0.00 1.40
144 145 6.796785 ACAAGGAGGCATAATTAGCAAAAT 57.203 33.333 8.51 0.00 0.00 1.82
145 146 6.603940 AACAAGGAGGCATAATTAGCAAAA 57.396 33.333 8.51 0.00 0.00 2.44
146 147 6.603940 AAACAAGGAGGCATAATTAGCAAA 57.396 33.333 8.51 0.00 0.00 3.68
147 148 6.437162 AGAAAACAAGGAGGCATAATTAGCAA 59.563 34.615 8.51 0.00 0.00 3.91
148 149 5.951747 AGAAAACAAGGAGGCATAATTAGCA 59.048 36.000 8.51 0.00 0.00 3.49
149 150 6.456795 AGAAAACAAGGAGGCATAATTAGC 57.543 37.500 0.00 0.00 0.00 3.09
151 152 9.528489 ACTTAAGAAAACAAGGAGGCATAATTA 57.472 29.630 10.09 0.00 0.00 1.40
152 153 8.422577 ACTTAAGAAAACAAGGAGGCATAATT 57.577 30.769 10.09 0.00 0.00 1.40
153 154 8.957466 GTACTTAAGAAAACAAGGAGGCATAAT 58.043 33.333 10.09 0.00 0.00 1.28
154 155 7.940137 TGTACTTAAGAAAACAAGGAGGCATAA 59.060 33.333 10.09 0.00 0.00 1.90
155 156 7.455058 TGTACTTAAGAAAACAAGGAGGCATA 58.545 34.615 10.09 0.00 0.00 3.14
156 157 6.303839 TGTACTTAAGAAAACAAGGAGGCAT 58.696 36.000 10.09 0.00 0.00 4.40
157 158 5.686753 TGTACTTAAGAAAACAAGGAGGCA 58.313 37.500 10.09 0.00 0.00 4.75
158 159 6.819397 ATGTACTTAAGAAAACAAGGAGGC 57.181 37.500 10.09 0.00 0.00 4.70
183 184 9.970395 AATGAATTGAACGATAATATGCAACAT 57.030 25.926 0.00 0.00 0.00 2.71
192 193 9.093970 TCGTGAGTTAATGAATTGAACGATAAT 57.906 29.630 0.00 0.00 33.11 1.28
193 194 8.468720 TCGTGAGTTAATGAATTGAACGATAA 57.531 30.769 0.00 0.00 33.11 1.75
194 195 8.539674 CATCGTGAGTTAATGAATTGAACGATA 58.460 33.333 6.56 0.00 43.92 2.92
195 196 6.961359 TCGTGAGTTAATGAATTGAACGAT 57.039 33.333 0.00 0.00 33.11 3.73
196 197 6.672118 GCATCGTGAGTTAATGAATTGAACGA 60.672 38.462 0.00 0.00 41.16 3.85
197 198 5.449113 GCATCGTGAGTTAATGAATTGAACG 59.551 40.000 0.00 0.00 0.00 3.95
198 199 6.314018 TGCATCGTGAGTTAATGAATTGAAC 58.686 36.000 0.00 0.00 0.00 3.18
199 200 6.403527 CCTGCATCGTGAGTTAATGAATTGAA 60.404 38.462 0.00 0.00 0.00 2.69
200 201 5.065090 CCTGCATCGTGAGTTAATGAATTGA 59.935 40.000 0.00 0.00 0.00 2.57
201 202 5.163723 ACCTGCATCGTGAGTTAATGAATTG 60.164 40.000 0.00 0.00 0.00 2.32
202 203 4.943705 ACCTGCATCGTGAGTTAATGAATT 59.056 37.500 0.00 0.00 0.00 2.17
203 204 4.517285 ACCTGCATCGTGAGTTAATGAAT 58.483 39.130 0.00 0.00 0.00 2.57
204 205 3.937814 ACCTGCATCGTGAGTTAATGAA 58.062 40.909 0.00 0.00 0.00 2.57
205 206 3.610040 ACCTGCATCGTGAGTTAATGA 57.390 42.857 0.00 0.00 0.00 2.57
206 207 4.180817 TGTACCTGCATCGTGAGTTAATG 58.819 43.478 0.00 0.00 0.00 1.90
207 208 4.465632 TGTACCTGCATCGTGAGTTAAT 57.534 40.909 0.00 0.00 0.00 1.40
208 209 3.945981 TGTACCTGCATCGTGAGTTAA 57.054 42.857 0.00 0.00 0.00 2.01
209 210 4.885325 TCTATGTACCTGCATCGTGAGTTA 59.115 41.667 0.00 0.00 0.00 2.24
210 211 3.699538 TCTATGTACCTGCATCGTGAGTT 59.300 43.478 0.00 0.00 0.00 3.01
211 212 3.288092 TCTATGTACCTGCATCGTGAGT 58.712 45.455 0.00 0.00 0.00 3.41
212 213 3.990318 TCTATGTACCTGCATCGTGAG 57.010 47.619 0.00 0.00 0.00 3.51
213 214 3.888930 TGATCTATGTACCTGCATCGTGA 59.111 43.478 0.00 0.00 0.00 4.35
214 215 4.022849 TCTGATCTATGTACCTGCATCGTG 60.023 45.833 0.00 0.00 0.00 4.35
215 216 4.145052 TCTGATCTATGTACCTGCATCGT 58.855 43.478 0.00 0.00 0.00 3.73
216 217 4.457257 TCTCTGATCTATGTACCTGCATCG 59.543 45.833 0.00 0.00 0.00 3.84
217 218 5.973899 TCTCTGATCTATGTACCTGCATC 57.026 43.478 0.00 0.00 0.00 3.91
218 219 5.187381 CCATCTCTGATCTATGTACCTGCAT 59.813 44.000 0.00 0.00 0.00 3.96
219 220 4.525874 CCATCTCTGATCTATGTACCTGCA 59.474 45.833 0.00 0.00 0.00 4.41
220 221 4.620332 GCCATCTCTGATCTATGTACCTGC 60.620 50.000 0.00 0.00 0.00 4.85
221 222 4.380339 CGCCATCTCTGATCTATGTACCTG 60.380 50.000 0.00 0.00 0.00 4.00
222 223 3.761218 CGCCATCTCTGATCTATGTACCT 59.239 47.826 0.00 0.00 0.00 3.08
223 224 3.759086 TCGCCATCTCTGATCTATGTACC 59.241 47.826 0.00 0.00 0.00 3.34
224 225 5.378292 TTCGCCATCTCTGATCTATGTAC 57.622 43.478 0.00 0.00 0.00 2.90
225 226 4.460731 CCTTCGCCATCTCTGATCTATGTA 59.539 45.833 0.00 0.00 0.00 2.29
226 227 3.257873 CCTTCGCCATCTCTGATCTATGT 59.742 47.826 0.00 0.00 0.00 2.29
227 228 3.509184 TCCTTCGCCATCTCTGATCTATG 59.491 47.826 0.00 0.00 0.00 2.23
228 229 3.509575 GTCCTTCGCCATCTCTGATCTAT 59.490 47.826 0.00 0.00 0.00 1.98
229 230 2.887783 GTCCTTCGCCATCTCTGATCTA 59.112 50.000 0.00 0.00 0.00 1.98
230 231 1.686052 GTCCTTCGCCATCTCTGATCT 59.314 52.381 0.00 0.00 0.00 2.75
231 232 1.686052 AGTCCTTCGCCATCTCTGATC 59.314 52.381 0.00 0.00 0.00 2.92
232 233 1.786937 AGTCCTTCGCCATCTCTGAT 58.213 50.000 0.00 0.00 0.00 2.90
233 234 2.025155 GTAGTCCTTCGCCATCTCTGA 58.975 52.381 0.00 0.00 0.00 3.27
234 235 2.028130 AGTAGTCCTTCGCCATCTCTG 58.972 52.381 0.00 0.00 0.00 3.35
235 236 2.445682 AGTAGTCCTTCGCCATCTCT 57.554 50.000 0.00 0.00 0.00 3.10
236 237 3.612955 GCATAGTAGTCCTTCGCCATCTC 60.613 52.174 0.00 0.00 0.00 2.75
237 238 2.297597 GCATAGTAGTCCTTCGCCATCT 59.702 50.000 0.00 0.00 0.00 2.90
238 239 2.610727 GGCATAGTAGTCCTTCGCCATC 60.611 54.545 0.00 0.00 38.52 3.51
239 240 1.344763 GGCATAGTAGTCCTTCGCCAT 59.655 52.381 0.00 0.00 38.52 4.40
240 241 0.750850 GGCATAGTAGTCCTTCGCCA 59.249 55.000 0.00 0.00 38.52 5.69
241 242 0.318784 CGGCATAGTAGTCCTTCGCC 60.319 60.000 0.00 0.00 36.44 5.54
242 243 0.384669 ACGGCATAGTAGTCCTTCGC 59.615 55.000 0.00 0.00 0.00 4.70
243 244 1.404391 ACACGGCATAGTAGTCCTTCG 59.596 52.381 0.00 0.00 0.00 3.79
244 245 3.547613 CGTACACGGCATAGTAGTCCTTC 60.548 52.174 0.00 0.00 35.37 3.46
245 246 2.357009 CGTACACGGCATAGTAGTCCTT 59.643 50.000 0.00 0.00 35.37 3.36
246 247 1.945394 CGTACACGGCATAGTAGTCCT 59.055 52.381 0.00 0.00 35.37 3.85
247 248 1.672881 ACGTACACGGCATAGTAGTCC 59.327 52.381 6.72 0.00 44.95 3.85
248 249 3.103738 CAACGTACACGGCATAGTAGTC 58.896 50.000 6.72 0.00 44.95 2.59
249 250 2.159338 CCAACGTACACGGCATAGTAGT 60.159 50.000 6.72 0.00 44.95 2.73
250 251 2.456989 CCAACGTACACGGCATAGTAG 58.543 52.381 6.72 0.00 44.95 2.57
251 252 1.134753 CCCAACGTACACGGCATAGTA 59.865 52.381 6.72 0.00 44.95 1.82
252 253 0.108520 CCCAACGTACACGGCATAGT 60.109 55.000 6.72 0.00 44.95 2.12
253 254 0.173935 TCCCAACGTACACGGCATAG 59.826 55.000 6.72 0.00 44.95 2.23
254 255 0.173935 CTCCCAACGTACACGGCATA 59.826 55.000 6.72 0.00 44.95 3.14
255 256 1.079405 CTCCCAACGTACACGGCAT 60.079 57.895 6.72 0.00 44.95 4.40
256 257 2.340809 CTCCCAACGTACACGGCA 59.659 61.111 6.72 0.00 44.95 5.69
257 258 2.025418 CACTCCCAACGTACACGGC 61.025 63.158 6.72 0.00 44.95 5.68
258 259 0.249573 AACACTCCCAACGTACACGG 60.250 55.000 6.72 0.00 44.95 4.94
259 260 1.134226 GAACACTCCCAACGTACACG 58.866 55.000 0.00 0.00 46.33 4.49
260 261 1.202557 TGGAACACTCCCAACGTACAC 60.203 52.381 0.00 0.00 41.64 2.90
261 262 1.069513 CTGGAACACTCCCAACGTACA 59.930 52.381 0.00 0.00 41.64 2.90
262 263 1.607251 CCTGGAACACTCCCAACGTAC 60.607 57.143 0.00 0.00 41.64 3.67
263 264 0.682852 CCTGGAACACTCCCAACGTA 59.317 55.000 0.00 0.00 41.64 3.57
264 265 1.052124 TCCTGGAACACTCCCAACGT 61.052 55.000 0.00 0.00 41.64 3.99
265 266 0.320771 CTCCTGGAACACTCCCAACG 60.321 60.000 0.00 0.00 41.64 4.10
266 267 0.765510 ACTCCTGGAACACTCCCAAC 59.234 55.000 0.00 0.00 41.64 3.77
267 268 1.056660 GACTCCTGGAACACTCCCAA 58.943 55.000 0.00 0.00 41.64 4.12
268 269 0.191064 AGACTCCTGGAACACTCCCA 59.809 55.000 0.00 0.00 41.64 4.37
269 270 1.826096 GTAGACTCCTGGAACACTCCC 59.174 57.143 0.00 0.00 41.64 4.30
270 271 1.473278 CGTAGACTCCTGGAACACTCC 59.527 57.143 0.00 0.00 42.81 3.85
271 272 2.434428 TCGTAGACTCCTGGAACACTC 58.566 52.381 0.00 0.00 0.00 3.51
272 273 2.581216 TCGTAGACTCCTGGAACACT 57.419 50.000 0.00 0.23 0.00 3.55
285 286 2.646175 GCTGGCCAGTGGTCGTAGA 61.646 63.158 32.81 0.00 0.00 2.59
286 287 2.125512 GCTGGCCAGTGGTCGTAG 60.126 66.667 32.81 6.54 0.00 3.51
287 288 3.702048 GGCTGGCCAGTGGTCGTA 61.702 66.667 32.81 0.00 35.81 3.43
306 307 3.914579 CTGTGCACCTGGGCCTGAG 62.915 68.421 15.69 5.29 0.00 3.35
307 308 3.957586 CTGTGCACCTGGGCCTGA 61.958 66.667 15.69 0.00 0.00 3.86
310 311 3.646715 TACCTGTGCACCTGGGCC 61.647 66.667 23.94 0.00 36.51 5.80
311 312 2.359975 GTACCTGTGCACCTGGGC 60.360 66.667 23.94 15.15 36.51 5.36
312 313 2.351276 GGTACCTGTGCACCTGGG 59.649 66.667 23.94 20.00 36.51 4.45
325 326 3.078836 TGGCTAGCACCCGGGTAC 61.079 66.667 29.72 23.04 0.00 3.34
326 327 3.078836 GTGGCTAGCACCCGGGTA 61.079 66.667 29.72 10.74 0.00 3.69
328 329 4.473520 CTGTGGCTAGCACCCGGG 62.474 72.222 22.25 22.25 0.00 5.73
329 330 3.376935 CTCTGTGGCTAGCACCCGG 62.377 68.421 18.24 8.44 0.00 5.73
330 331 2.185350 CTCTGTGGCTAGCACCCG 59.815 66.667 18.24 2.51 0.00 5.28
331 332 2.586792 CCTCTGTGGCTAGCACCC 59.413 66.667 18.24 3.74 0.00 4.61
332 333 1.842381 AACCCTCTGTGGCTAGCACC 61.842 60.000 18.24 6.48 0.00 5.01
333 334 0.391793 GAACCCTCTGTGGCTAGCAC 60.392 60.000 18.24 13.11 0.00 4.40
334 335 1.888436 CGAACCCTCTGTGGCTAGCA 61.888 60.000 18.24 0.00 0.00 3.49
335 336 1.153549 CGAACCCTCTGTGGCTAGC 60.154 63.158 6.04 6.04 0.00 3.42
336 337 1.153549 GCGAACCCTCTGTGGCTAG 60.154 63.158 0.00 0.00 0.00 3.42
337 338 2.978824 GCGAACCCTCTGTGGCTA 59.021 61.111 0.00 0.00 0.00 3.93
338 339 4.379243 CGCGAACCCTCTGTGGCT 62.379 66.667 0.00 0.00 0.00 4.75
340 341 4.760047 CCCGCGAACCCTCTGTGG 62.760 72.222 8.23 0.00 0.00 4.17
341 342 3.649277 CTCCCGCGAACCCTCTGTG 62.649 68.421 8.23 0.00 0.00 3.66
342 343 3.382832 CTCCCGCGAACCCTCTGT 61.383 66.667 8.23 0.00 0.00 3.41
343 344 2.450479 AAACTCCCGCGAACCCTCTG 62.450 60.000 8.23 0.00 0.00 3.35
344 345 1.765597 AAAACTCCCGCGAACCCTCT 61.766 55.000 8.23 0.00 0.00 3.69
345 346 1.302271 AAAACTCCCGCGAACCCTC 60.302 57.895 8.23 0.00 0.00 4.30
346 347 1.599797 CAAAACTCCCGCGAACCCT 60.600 57.895 8.23 0.00 0.00 4.34
347 348 1.449726 AACAAAACTCCCGCGAACCC 61.450 55.000 8.23 0.00 0.00 4.11
383 384 0.596577 CCGTCGAGGTTTCTCTCACA 59.403 55.000 4.18 0.00 37.86 3.58
385 386 1.612676 TTCCGTCGAGGTTTCTCTCA 58.387 50.000 4.18 0.00 41.99 3.27
474 475 3.429822 CCGGGTTTCTTATAGAGCACGAA 60.430 47.826 0.00 0.00 32.35 3.85
494 495 2.048222 AGGCATGTCGTGTCACCG 60.048 61.111 0.00 0.00 33.88 4.94
502 503 2.876091 TCGTCTAAAAGAGGCATGTCG 58.124 47.619 0.00 0.00 30.68 4.35
503 504 3.557595 CCATCGTCTAAAAGAGGCATGTC 59.442 47.826 0.00 0.00 30.68 3.06
540 548 0.249155 CCGTTATGGTATGTCGGCGT 60.249 55.000 6.85 0.00 35.01 5.68
564 572 1.061799 CGAACCGTGTCTCCGTTACG 61.062 60.000 0.00 0.00 37.55 3.18
608 616 4.489771 CATTCCCCGCGCCTCCTT 62.490 66.667 0.00 0.00 0.00 3.36
627 635 2.128035 CTTGCGAACCATATCTCCGTC 58.872 52.381 0.00 0.00 0.00 4.79
672 681 0.179037 TACCGTCGAGATCCCGTGAT 60.179 55.000 0.00 0.00 0.00 3.06
673 682 0.392863 TTACCGTCGAGATCCCGTGA 60.393 55.000 0.00 0.00 0.00 4.35
675 684 0.393537 ACTTACCGTCGAGATCCCGT 60.394 55.000 0.00 0.00 0.00 5.28
676 685 0.029035 CACTTACCGTCGAGATCCCG 59.971 60.000 0.00 0.00 0.00 5.14
697 708 2.595463 CGCAATCCGATGGCCCAT 60.595 61.111 0.00 0.00 40.02 4.00
763 778 3.242518 GCCAAAAGATTTGAACCGCTAC 58.757 45.455 4.47 0.00 0.00 3.58
845 866 1.841342 GTGTTACGTTGTGCCGTTTTG 59.159 47.619 0.00 0.00 42.00 2.44
902 946 2.608623 GGGGTTTGGGGATTGGATATG 58.391 52.381 0.00 0.00 0.00 1.78
966 1010 1.124462 GTCGATCGATTCCGCTTCTG 58.876 55.000 22.50 0.00 35.37 3.02
1059 1103 4.770874 GGCCTCTTTACGCCGCCA 62.771 66.667 0.00 0.00 39.50 5.69
1455 1502 3.827898 GAGGAGACGACCCTGGCG 61.828 72.222 0.00 0.00 33.36 5.69
1726 1793 1.891150 CCCATGGGATTGATTAGCAGC 59.109 52.381 28.27 0.00 37.50 5.25
1732 1799 0.484212 ATCGGCCCATGGGATTGATT 59.516 50.000 36.00 13.91 37.50 2.57
1739 1806 2.046892 GATCGATCGGCCCATGGG 60.047 66.667 27.87 27.87 38.57 4.00
1776 1843 8.738106 TGAAAAAGAAACAAAAATCTTGGCATT 58.262 25.926 0.00 0.00 36.09 3.56
1828 1895 0.737019 CGATTTGGGCGCTGCAAAAT 60.737 50.000 7.64 8.50 32.02 1.82
1861 1928 6.565234 AGATTTAACTCAGACATCTGTACGG 58.435 40.000 8.70 0.00 44.12 4.02
1881 1948 7.944729 ACCAATGTGCTGATAAACTAAGATT 57.055 32.000 0.00 0.00 0.00 2.40
1891 1958 5.334802 CGAAACTGAAACCAATGTGCTGATA 60.335 40.000 0.00 0.00 0.00 2.15
1936 2006 3.557054 CCTCACCGAGATCAAAACTGGAA 60.557 47.826 0.00 0.00 0.00 3.53
1984 2059 3.437049 AGCAAGATTAGCTTTGAACCGAC 59.563 43.478 0.00 0.00 39.87 4.79
1991 2066 3.058639 GCGGGATAGCAAGATTAGCTTTG 60.059 47.826 0.00 0.00 43.25 2.77
2079 2956 6.238842 GCAGATGCCAAGAATAGCTTTCAATA 60.239 38.462 0.00 0.00 33.60 1.90
2098 2975 3.937079 TGTGCTGATCAACTAAGCAGATG 59.063 43.478 6.81 0.00 46.95 2.90
2161 3038 3.582208 ACTCTTCAAGCAGGAACAGATCT 59.418 43.478 0.00 0.00 0.00 2.75
2168 3045 4.526970 AGAACAAACTCTTCAAGCAGGAA 58.473 39.130 0.00 0.00 0.00 3.36
2182 3063 5.049828 CCCATGACCAAAAGAAGAACAAAC 58.950 41.667 0.00 0.00 0.00 2.93
2250 3132 6.998968 TTTTGGCAAAATGAACTGAAACAT 57.001 29.167 20.81 0.00 0.00 2.71
2295 3184 1.594194 TTGGCCAGTATTTGCGCCAG 61.594 55.000 5.11 0.00 46.67 4.85
2324 3213 2.254546 TCCGGTAACATGATCATGCC 57.745 50.000 31.17 23.33 42.39 4.40
2339 3228 5.574891 TTGAATTGTATTGAACCATCCGG 57.425 39.130 0.00 0.00 38.77 5.14
2341 3230 7.151308 TGTGTTTGAATTGTATTGAACCATCC 58.849 34.615 0.00 0.00 0.00 3.51
2434 3327 7.038048 TGTGTCATTTTTCATGTTTGCAGTTA 58.962 30.769 0.00 0.00 0.00 2.24
2437 3330 5.970140 TGTGTCATTTTTCATGTTTGCAG 57.030 34.783 0.00 0.00 0.00 4.41
2472 3365 2.213499 CGCGCTCCCAGATTTTTATCT 58.787 47.619 5.56 0.00 0.00 1.98
2560 3455 6.265422 TCGAGAAGATTGTATAAGCAGGATCA 59.735 38.462 0.00 0.00 0.00 2.92
2580 3475 9.197694 GATAGCAAGAATAGCTTTTAATCGAGA 57.802 33.333 0.00 0.00 43.25 4.04
2588 3483 8.511604 TTAGCAAGATAGCAAGAATAGCTTTT 57.488 30.769 0.00 0.00 43.25 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.