>input_sequence_73441
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---ATGCCGCCGCAGTTCCCCGCCGGCAGCGCCAGGCCCTCCTCCGCCTCCGCCGCGCCCGCTGGCGGCGTAAAGAGGCC
GTCTTTGCCCCCCACCACCTCCCTCTCTCCGCCGCCGACCAAGAAGATCGCCCGTCCGGTGTCCGCGCCCTGCCTCCCCG
CGCTCTCCAAGAAGGTGCCCCCTCGCCCGACGCCTTCGACCGCGGCCAGGCCGAGGCCGCCGCAGCCCCCGGCGTCGTCG
TCGGCGTCGG---CGTCGGCGGCGAGGGCCGCCGGGCCGCCCAAGAAGACGGCGCAGCGCCCGGCCGCGGAGGCGGAGGC
GGAGGCGGCCCCGGGCCGCGCGGCCGAGAGCGTGCACCCGGCGCGGCGGCTGGCGTGCGGGACGGCCGTGTACGTGCGCA
CGCGCTACTACGTGGTGATCGCCGACGGGACCGGCAGGTGCTGCCTCCTCATCTGGCTGCCCGCCAGGGTCGTCTCCTCC
TCCGACGCCTACCACTGCAGCGTCAAGTACGCCGCCGACCTCCACGCCATGTTCGCCGGCAAGATCGTCCGCGTCCCCGT
CACCGACGTCCGCGTCGCGCCCAACCACCATCCCTCCACA------------------GCCGCCCAGAGCCAGAGGCCCC
AACAACAGGCGCCCTGA---------------------------------------------------------------
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>chr4A_1_TraesCS4A01G332000
CTTTCTATGGCAAAACTTTGAATTTATGCATGGCGAAACTATGTGATGTAACTAAACCGTGGTCCTGATCTAGCGTAGAT
CGCTCTAGTTAATTAGTTTGGGTATGAGGAACTTTGTCGTTTATGTTTACTATTGGTTGCTTGTATTTTGCTAATTATGC
CTCCTTGTTTTCTTAAGTACATTATGTTGCATATTATCGTTCAATTCATTAACTCACGATGCAGGTACATAGATCAGAGA
TGGCGAAGGACTACTATGCCGTGTACGTTGGGAGTGTTCCAGGAGTCTACGACCACTGGCCAGCCGCTCAGGCCCAGGTG
CACAGGTACCCGGGTGCTAGCCACAGAGGGTTCGCGGGAGTTTTGTTTTCCTCCGGACGAGGGTGTGAGAGAAACCTCGA
CGGAAAGCGGGTGTGTGGGCCATCGGATTACGAACCGACGGCTCGGCAGCTGCCAGTTGGGCTTCCCGTGTTTATTCGTG
CTCTATAAGAAACCCGGTGACACG-------ACATGCCTCTTTTAGACGATGGTCGGTATCTCCGAGACGCCGACATACC
ATAACGGGGAACGTAACGGAGACACGGTTCGCAAGCGTTTCTTCCTCCTCCTGGCAAGGAGGCGCGGGGAATGTGACGGA
GATATGGTTCGCAAGCATTTCTTTCTCCTTCCGG-GAGGAATCACGGG--ATCTCGACGGTAAGTGGA---TGGGCCATC
GGATTGCGATCCGACGGCTCATGGGGCTTCCCCTC-ATGCTCTGTTTTCAGAAACCAGTAGCGGTTCAAA-TCTTTTGGC
GTGCACACACAGAGAGCACGTGACCCATCGGGCG-----CTCCCAAAACAGGGGAAAAGAGGCCTCAAAACGGCACAACG
T-----------------------AACACAATCCGACACCGCCTCCAACTCTTGGCGGCCGCCACCATATCCAATCCCCA
AACCCCCCGCCGTCGCGCCCAATCGATCCGCCGCCCCTAAACCCTAGACCAGAAGCGGAATCGATCGACCGACCCACCGA
GCAATGCCGCCGCAGTTCCCCGCCGGCAGCGCCAGGCCCTCCTCCGCCTCCGCCGCGCCCGCTGGCGGCGTAAAGAGGCC
GTCTTTGCCCCCCACCACCTCCCTCTCTCCGCCGCCGACCAAGAAGATCGCCCGTCCGGTGTCCGCGCCCTGCCTCCCCG
CGCTCTCCAAGAAGGTGCCCCCTCGCCCGACGCCTTCGACCGCGGCCAGGCCGAGGCCGCCGCAGCCCCCGGCGTCGTCG
TCGGCGTCGG---CGTCGGCGGCGAGGGCCGCCGGGCCGCCCAAGAAGACGGCGCAGCGCCCGGCCGCGGAGGCGGAGGC
GGAGGCGGCCCCGGGCCGCGCGGCCGAGAGCGTGCACCCGGCGCGGCGGCTGGCGTGCGGGACGGCCGTGTACGTGCGCA
CGCGCTACTACGTGGTGATCGCCGACGGGACCGGCAGGTGCTGCCTCCTCATCTGGCTGCCCGCCAGGGTCGTCTCCTCC
TCCGACGCCTACCACTGCAGCGTCAAGTACGCCGCCGACCTCCACGCCATGTTCGCCGGCAAGATCGTCCGCGTCCCCGT
CACCGACGTCCGCGTCGCGCCCAACCACCATCCCTCCACA------------------GCCGCCCAGAGCCAGAGGCCCC
AACAACAGGCGCCCTGAGCCGAGTCGACACCGGCCAAGTCCAAGAATCG--CCCCCAAGAGCAAGCTTCGCGTGCCCCTG
GCGAAGCCAAGAAACGCCGTGCTTGCTGACGGGCTGCTAATCAATCCCATGGGCCGATCGATCAAGATAGCAGAGGCCTG
ATAATGCCAAGATTTTTGTTTCTTTTTCAGTTCTTTTGCTCGTCTTGACTCGAGATTTTGCAGCGCCCAAATCGGCAGTG
AGAACTACCGTACAGATGTCTGAGTTAAATCTTAGTTTATCAGCACATTGGTTTCAGTTTCGATTCCTATC---TATGTT
GATCATTCCAGTTTTGATCTCGGTGAGGTGAAT---GATCCTGCT--TATACAATCTTGTCGGTTCAAAGCTAATC----
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------------------------------------------------------------------------------TT
GCTATCCCGCTTGAGGAATTTGCTCTTTTCGTTATGATGGGGGGCAACAATTGCCTCTGTTTCCTGAATCTTCTCTATTG
AAAGCTATTCTTGGCATCTGCTTAGTTGATCAGCACATTGGTTTCAGTTTCGATTCCTCTGTTGATCAGTCCAGTTTAGA
TCTGT----TCCTGCTTGAAGAGTTTGTTCTTCTT-TTGGTCATGGGGCGTAATCGTCTCTGCTTTTCGAATTTTCATCA
CTCTTTCCTTAA----TGTTTCAGTTCATTTTGCC---AAAAAAGGAGCTCCTGTTATCTTGACTGGCGCAAATACTGGC
CAAGTTTTGAATGGCATGATCATGTTACCGGATGGTTCAATACAATTCAAACACATTTGTCACAAGGATTCATGTGAAAT
CATGCTGAATAG----TAGGAGCATCTTGATTGTAAGCGTTGCACTTAACTGCAAACATGAAAAATGACACATCATTCAG
AATCAGATAAAAATCTGGGAGCGCGCACACTCGGTTCAGTTTAGATTCTTTT-TTCAGCCCAGTGGTTTCAGGCTTTCAG
TTTTGATCTCC-GGTGATCCTGCTTATACAATCTTCTCGATTAAAAGCTATTCTTGCTATCTTGC--TAAGAATGTCATT
TTGGTTATG
>chr5D_349
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----------------------------GGTTCGCAGGAGTTTCGTTTTCCTCCGGACGAGGGCGCGAGAGAAACCTCGA
CGGGAAGTGGGTGTGTGGGCCACCGGATTACGAACCGACGGCTCGGCAACTGCTAGTTGGGCTTCCCGTGTTTACTCGTC
TTCTATAAGAAACCAGGTGACAATGGTAACGGCATGCCTCTTTTAGACAATGGTCGGTATCTCCGATCCGCCCACATACC
ATAACGGGGAATGTAACGGAGACACGGTTCGCAAGCGTTTCTTTCTCTTCCTGGCGAGGAGGCGTGGGGAATGTAACGGA
GATATGGTTCGCAAGCATTTCTTTCCCCTTCCGG-GAGGAGGCGTGGGAAATCTCGACAGTAAATGGGCGTA-GGCCATC
GGATTGCGATCCGACGGCTCACCGGGCTTCCCCTC-ATGCTCTGTTTTCAGAAACCACTAGCGGTTCAAAATCTTTTGGC
GTGCACACACAGAGAGCACGTGACCCATCGGGCGCTCCCCTCCCAAAACAGGGGAAAAGAGGCCTGAAAACGGCACAACG
T-----------------------AACACAATCCGACGCCGCCTCCAACTCTTGGCGGCCGCCACTATATCCAATCCCCA
AACCCCCCGCCGTCGCGCCCAATCGATCCGCCGCCCCTAAACCCTAGACTAGAAGCGGAATCGATCGACCGGCCGACCGA
GCAATGCCGCCGCAGTTCCCCACCGGCAGCGCCAGGCCCTCCTCCGCCTCCGCCGCGCCCGCCGGCGGCGTAAAGAGGCC
GTCTTTGCCCCCCACCACCTCCCTCTCCCCGCCGCCGGCCAAGAAGATCGCCCGCCCGGCGTCCGCGCCCTGCCTCCCCG
CGCTCTCCAAGAAGGTGCCCCCTCGCCCGGTGCCTTCGACCGCGGCCAGGCCGCGGCCGCCGCAGCCCC-----------
-CGGCGTCGG---CGTCGGCGGCGAGGGCCGCCGGGCCGCCCAAGAAGACGGCGCAGCGCCCGGC------GGCGGAGGC
GGAGGCGGCCCCGGGCCGCGCGGCCGAGAGCGTGCACCCGGCGCGGCGGCTGGCGTGCGGGACGGCCGTGTACGTGCGCA
CGCGCTACTACGTGGTGATCGCCGACGGGACCGACAGGTGCTGCCTCCTCATCTGGCTGCCGGCCAGGGTCGTCTCCTCC
TCCGACGCCTACCACTGCAGCGTCAAGTACGCCGCCGACCTCCACGCCATGTTCGCCGGCAAGATCGTCCGTGTCCCCGT
CAGCGACGTCCGCGTGGCGCCCAACCACCGCCCCTCCGCCGCCCCCGCCGCCGCCAAGGCCGCCCAGAGCCAGAGGCCCC
AACAACAGGCGCCCTGAGCTGAGTCGACACCGGCCAAGTCCAAGAATCGGCA--CCAAGAGCAAGCTTCGCGTACCCCCG
GCGAAGCCAAGAAACGCCGTGCTTGCTGACGG-CTGCTCATCAAT-CCATGGGCCGATCGATCAAGATAGCAGAGGCCTG
ATGATGCCTAGATTTTTGTTTCTTTTTCAGTTCTTTTGCTCGTCTTGACTCGAGTTTTTGCAGCGCCCAAATCG------
-------ACGTACAGATGTCTGAGTTAT-TCTTAGTTGATCAGCACATTGGTTTCAGTTTCGATTCCTAT---GTATGTT
GATCAGTCCAGTTTTGATCTCGGTGAGGTGAAT---GATCCTGCTTATATACAATCTTCTCGGTTGAAATCTAATCTTGG
GTTGGAACAATTGCCTCTGTTTCCTGAATCTTTTCGATTGCTATTCAGGGTATGCTGTTTTTGGAATTTGTTCTTCTTTT
CGTCATGGGGCACAATCGTCTCTGTTTTTGAAATTGCATGATCACAATTATCAGCTGCTGTTTCTCGACTGGAAGCTATT
CTGGGTATCCTGCTTGAAAATTTCTTCTTCTTTTGGTCATGGGGCGCAAGACTCTGTTTCCTGAATTGTGCGGTCATGAT
TTTCAGCTACTGTTCTTTTGTTTCATCCATCTTTGGTTATTTGATGTTTCACGTTTAAAAGAGATTATTCATTTTATCAT
GCTAAAAAAAAGGAGTTCCTGTTATCTTGAATGGCACAAATGCTCGCCAAGTCTGAGTTACATGATCATGTTATGTCAGA
GATTTCAGCACTTGGCAACCACAGATACAATTCAGACACAATTCTCAAACAGAATCATGTGAAATCATGATGAATAGCAG
GAGTGTCTTGATTGCGATCATGAAAATTGCCACATTAGTGTGAATCTGAATGAAATGTGAGCATGTTTAACATTGAAACC
TGACAGCACATTCGTGTCAGTTTTGGTTCCTCTGTTGATCTTCAGTTTTTATCTTCTCGACTGAAAGCTATTCTTGGCGA
AGCCAAGAAACGCCGTGAGAACTACCATACAGATGTCTGAGTTAATCTTAGTTGATCAGCACATTGGTTTCAGTTTTGAT
TCCTCTGTTGATCGGTCCGGTTTTGATCTCGGTGAGGTGAATGATCCTGCTTATACAATCTTCTTGGTTGAAAGCTAATT
GCTATCCCGCTCGAGGAATTTGTTCTTTTCGTTATGATGGGGGGCAACAATTGCCTATGTTTCCTGAATCTTCTCGATTG
AAAGCTGTTCTTGGTATCTGCTTAGTTGATCAGCACATTGGTTTCAGTTTCAATTCCTCTGTTGATCAGTCCAGTTTCGA
TCTGGTTGATCCTGCTTGAAGAATTTGCTCTTCTT-TTGGTCATGGGGCGTAATCGTCTCTGCTTTTCGAATTTTCATCA
CTCTTTTCTTATTCAGTGTTTCAGTTCATCTTGCCAGAAAAAAAAAAGCTCCTGTTATCTTGAGTGGAGCAAATACTGGC
CAAGTTTTGAATCGCATGATCATGTTGTCAGATGGTTCAATACAATTCAAACACATTTGTCACAAAGATTCATGTGAAAT
CATGCTGAATAGCACGTAGGAGCATCTTGATTGTACGCGTTGCACTGAAATGCAAACATGAAAAATGACACATCATTCAG
AACCCAATAAAAATCTGAGCTCACGCACACTTGGTTCAGTTTCGATTCTTTTGTTCAGCCCAGTGGTTTCAGGCTTTCAG
TTTTGATCTCCTGGCGATCCTGCTTAAACAATCTGCTCGATTGGAAGCTATTCTTGCTATCTTGC--TAAGAATGTCATT
TTGGTTATG
>chr5B_359
AGTGTTTC------------------------------------------------------------------------
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---------------------------------------------TTTTCCTCCAGACGAGGGCGCGAGAGAAACCTCGA
CAAAAAGTGGGTGCGTAGGCCACCGGATTACGATCCGATAGCTCAGCAGCCGCCAGTTGGGCTTCCCGTGCTTACTCATG
CTCTTTAGGAAACCAGATGAAAACAGTAACAACATGCCTCTTTTAGACGATGCTCGGTATCCCCGAGCCGCTGACATACC
ATAATGGGGAATGTAACGGAGACGCGGCTCGCACGCATTTCTTTCCCCTCCCGGCGAGGAGGCGCGGGGAATGTAACGGA
GACACGGCTCGCAAGCGTTTCTTTCCCCTCCCGGCGAGGAGGCGTGTGCAATCTCGACAGGAAGTGGGGCGTGGGCCATC
GGATCGCGATCCGACGGCTCATCGGGCTTCCCCTCAATGCTCCGTTTCGAGG--CCACTAGCGTTCAAAC--CTTTTGGC
GTGCACACACGGGCAGCACGTGACCCATCGGGC-----------------------------CCTGAAAACGGCGAAACG
GAGAGCACTAGTACTCGTGTTGGAAACACAATCCAAC--------------------GCCGCCACTATATCCAATCCCCA
AACCCCCCGCCGTCGACCCCAATCGATCCGCCGCCCCTAAACCCTAGCCTAGAAGCGGAATCGATCGATCCACCGACCGA
GCAATGCCGCCGCAGTTCCCCGCCGGCAGCGCCCGGCCCTCCTCCGCCTCGGCCGCGCCCGCCGGCGGCGTAAAGAGGCC
GTCTTTGCCCCCCACCACCTCCCTCTCCCCGCCGCCGACCAAGAAGATCGCCCGCCCGGCCTCCGCGCCCTGCCTCCCCG
CGCTCTCCAAGAAGGTCCCCCCTCGCCCGGTGCCTTCCACCGCGCCCAGGCCGCGGCCGCCGCAGCCCC-----------
-CGCCGTCGGCCTCGTCGGCGGCGAGGGCCGCCGGGCCGCCCAAGAAGACGGCGCAGCGCCCGGC------GGCAGAGGC
GGAGGCGGCCCCGGGCCGCGCGGCCGAGAGCGTGCACCCGGCGCGGCGGCTGGCGTGCGGGACGGCCGTGTACGTGCGCA
CGCGCTACTACGTGGTGATCGCCGACGGGACCGGCAGGTGCTGCCTCCTCATCTGGCTGCCGGCCCGGGTCGTCTCCTCC
TCCGACGCCTACCACTGCAGCGTCAAGTACGCCGCCGACCTCCACGCCATGTTCGCCGGCAAGATCGTCCGCGTCCCCGT
CACCGACGTCCGCGTCGCGCCCAGCCACCGTCCCTCCGCCGCCCCCGCCACCGCCAAGGCCGCCCAGAGCCAGAGGCCCC
AACAACAAGCGCCCTGAGCCGAGTCGACACCGGCCAATTCCAAGAATCGCCCCCCCAAGAGCAAGCTTCGCGTACCCC-G
GCGAAGCCAAGAAACGCCGTGCTTGCTGACGG-CTGCTCATCACT-CCATGGGCCGATCGATCAAGATGGCAGAGGCCTG
ATGGTGCCTAGAATTTCTTTTCCTTT-CAGTTCTTTTGCTCGTCTTGACTCGAGTTTTTGCAGCGCCCAAATCGGCAGTG
AGAACTAACGTACAGATGTCGGAGTTA-ATCTTAGTTGATCAGCACATTGGTTTCAGTTTCGATTCCTATGTAGTATGTT
GATCAGTCCAGTTTTGATCTCGGCGAGGTGAATGATGATCCTGCTTATATACAATCTTCTCGGTTGAAAGCTAATC----
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------------------------------------------------------------------------------TT
GCTATACAGCTTCAGGAATTTGTTCA-------------------AACAATTGCCCCTGTTTCCTGAATCTTCTCGATTG
AAAGCTATTC---------------------------TTGGCTTCAGTTTCGATTCCTCTGTTGATCAGTCCTGTTTCGA
TCTGGTTGATCCTGCTTGAAGAATTTGTTCTTCTTTTTGGTCATGGGGCGTAATCGTATCTGCTTTTCGAATTTTCATCA
CTCTTTCCTTATTCAGTGTTTCAGTTTATCTTGCCA-AAAAAAAGGAGCTCCTGTTTTCTTGAGTGGCAGAAATACTGGC
CAAGTTTTGAATAGCATGATCATGTTTTCAGATGTGTCAATACAAATCAAACACAATTGTCACAAAGATTCATGTGAAAT
CATGCTGAATAG----TAGGAGCATCTTGATTGTAAGCATTGCACTGAAGTGCAAACATGAAAGATGACACAT---TCAG
AGTCCGACAAAAATCTGAGCGTGCGCACACTCTGTTCAGTTTCGATTCTTTTGTTCAGCCCAGTGGTTTCACGCTTTCAG
TTTTGATCTCT-GGCGATCATGCTTATCCAATCTGCTCGATTGAAAGCTATTCTTGTTATCCTGCTATAAGAATGTCATT
TTGGTTATG
>SNPs
SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-------S-------------------S-S--------------
-------S--------------S---------------------------------------------------S-----
--------------S-------SS-------------------------------------------S------------
-----------S-------------------------------S-----------S------------------S-----
-------------------------S--------------SS-SS-------------S--------S------------
----------------------S----------------------------------S----------------------
-----------------------------------------------------------------S--------------
-------------------------------------S---------------------------S--------------
-------------------------------------------------S------------------------S-----
--------------------------------------------------------------S-----------------
---------------------------S--------------------------S----S--------------------
-----------------------------SS----------------------S---------------SSSSSSSSSSS
S----------------------------------------------------------------SSSSSS---------
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-------------------------------------------------------------S------------------
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-----------------------------S-------S-S----------------------------------------
-------------------------------------------------------------------------S----S-
--------------------------------S-----S------S----------------------------------
--S-----S---------------------------------------------S-------------------------
-------S-------------------S---------S--------------------------------S---------
-----S----------------------------------------------------S------S--------------
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----------------------S----------------------------------------------------S----
--------------S--------------------------------------------------------------S--
----S-----------------S---------------------------------------------------------
-----------S-----------------S---------------------------------S----------------
------------S-------------SS-S-----------------------------------S--------------
----------------------------------------------S--S------------------------------
----S------------S-S----------------------S-------------------------------------
--------------S-------------------S-------S-------------------------------------
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>forward_272
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------------ACTATGCCGTGTACGTTGGG------------------------------------------------
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>reverse_1799
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--------------------------------------AATCAATCCCATGGGCCGAT----------------------
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