Multiple sequence alignment - TraesCS4A01G328600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G328600 chr4A 100.000 3783 0 0 1 3783 614109525 614105743 0.000000e+00 6986.0
1 TraesCS4A01G328600 chr4A 91.892 185 9 3 1138 1322 614108322 614108144 1.740000e-63 254.0
2 TraesCS4A01G328600 chr4A 91.892 185 9 3 1204 1382 614108388 614108204 1.740000e-63 254.0
3 TraesCS4A01G328600 chr4A 88.038 209 24 1 21 228 291308526 291308318 2.920000e-61 246.0
4 TraesCS4A01G328600 chr4A 87.678 211 24 2 20 229 671930746 671930537 1.050000e-60 244.0
5 TraesCS4A01G328600 chr4A 87.019 208 26 1 21 227 669636655 669636448 2.270000e-57 233.0
6 TraesCS4A01G328600 chr4A 87.500 128 10 3 1138 1265 614108262 614108141 3.940000e-30 143.0
7 TraesCS4A01G328600 chr4A 94.872 39 2 0 355 393 737180163 737180201 1.130000e-05 62.1
8 TraesCS4A01G328600 chr5D 95.158 950 26 10 2138 3074 554475729 554476671 0.000000e+00 1482.0
9 TraesCS4A01G328600 chr5D 91.484 869 35 22 1204 2035 554474796 554475662 0.000000e+00 1158.0
10 TraesCS4A01G328600 chr5D 87.537 1027 73 18 304 1322 554474001 554474980 0.000000e+00 1136.0
11 TraesCS4A01G328600 chr5D 83.542 480 65 9 3285 3762 554477098 554477565 1.610000e-118 436.0
12 TraesCS4A01G328600 chr5D 90.000 100 7 2 1607 1706 307392473 307392569 3.970000e-25 126.0
13 TraesCS4A01G328600 chr5B 87.063 1229 97 24 127 1317 696192056 696190852 0.000000e+00 1332.0
14 TraesCS4A01G328600 chr5B 90.693 1010 32 21 2105 3074 696189663 696188676 0.000000e+00 1288.0
15 TraesCS4A01G328600 chr5B 95.238 441 6 2 1605 2045 696190111 696189686 0.000000e+00 684.0
16 TraesCS4A01G328600 chr5B 82.153 706 93 17 3081 3768 696188569 696187879 3.280000e-160 575.0
17 TraesCS4A01G328600 chr5B 93.094 362 17 5 1207 1561 696191028 696190668 1.200000e-144 523.0
18 TraesCS4A01G328600 chr5B 90.000 120 6 2 1138 1257 696190965 696190852 2.350000e-32 150.0
19 TraesCS4A01G328600 chr4B 87.736 212 25 1 19 229 450472916 450472705 2.920000e-61 246.0
20 TraesCS4A01G328600 chr4B 93.478 46 3 0 228 273 22950794 22950749 6.780000e-08 69.4
21 TraesCS4A01G328600 chr1A 86.574 216 28 1 21 235 579859430 579859215 1.760000e-58 237.0
22 TraesCS4A01G328600 chr1A 90.588 85 6 2 1415 1497 5951254 5951338 1.110000e-20 111.0
23 TraesCS4A01G328600 chr1A 89.412 85 7 2 1415 1497 16075999 16076083 5.170000e-19 106.0
24 TraesCS4A01G328600 chr1B 85.648 216 29 2 14 228 31906358 31906144 3.800000e-55 226.0
25 TraesCS4A01G328600 chr1B 84.971 173 21 3 1325 1497 39999135 39999302 1.810000e-38 171.0
26 TraesCS4A01G328600 chr3B 86.124 209 28 1 21 228 250178470 250178262 1.370000e-54 224.0
27 TraesCS4A01G328600 chr3B 86.124 209 28 1 21 228 329630802 329630594 1.370000e-54 224.0
28 TraesCS4A01G328600 chr3A 85.849 212 29 1 18 228 59036007 59035796 1.370000e-54 224.0
29 TraesCS4A01G328600 chr3A 91.111 45 4 0 230 274 496047315 496047359 1.130000e-05 62.1
30 TraesCS4A01G328600 chrUn 90.000 100 7 2 1607 1706 29486552 29486648 3.970000e-25 126.0
31 TraesCS4A01G328600 chr7D 90.722 97 6 2 1610 1706 543121620 543121527 3.970000e-25 126.0
32 TraesCS4A01G328600 chr7D 94.737 38 2 0 230 267 562766940 562766903 4.080000e-05 60.2
33 TraesCS4A01G328600 chr6D 90.000 100 7 2 1607 1706 349020813 349020909 3.970000e-25 126.0
34 TraesCS4A01G328600 chr6D 90.722 97 6 2 1610 1706 349182721 349182628 3.970000e-25 126.0
35 TraesCS4A01G328600 chr6D 80.822 73 13 1 228 299 3461789 3461717 5.280000e-04 56.5
36 TraesCS4A01G328600 chr3D 90.000 100 7 2 1607 1706 433045373 433045469 3.970000e-25 126.0
37 TraesCS4A01G328600 chr3D 90.000 100 7 2 1607 1706 604728733 604728829 3.970000e-25 126.0
38 TraesCS4A01G328600 chr3D 97.436 39 1 0 355 393 419929867 419929829 2.440000e-07 67.6
39 TraesCS4A01G328600 chr3D 83.871 62 10 0 233 294 374036169 374036230 4.080000e-05 60.2
40 TraesCS4A01G328600 chr2A 90.588 85 6 2 1415 1497 770215172 770215256 1.110000e-20 111.0
41 TraesCS4A01G328600 chr2A 88.889 45 5 0 230 274 699509548 699509504 5.280000e-04 56.5
42 TraesCS4A01G328600 chr7A 90.476 84 6 2 1416 1497 373292383 373292300 4.000000e-20 110.0
43 TraesCS4A01G328600 chr7A 89.412 85 7 2 1415 1497 93144468 93144552 5.170000e-19 106.0
44 TraesCS4A01G328600 chr7A 92.500 40 1 2 358 396 156101948 156101910 5.280000e-04 56.5
45 TraesCS4A01G328600 chr1D 89.412 85 7 2 1415 1497 393217807 393217723 5.170000e-19 106.0
46 TraesCS4A01G328600 chr6B 97.222 36 1 0 229 264 129444733 129444768 1.130000e-05 62.1
47 TraesCS4A01G328600 chr6B 97.222 36 1 0 225 260 174244386 174244421 1.130000e-05 62.1
48 TraesCS4A01G328600 chr6B 97.222 36 1 0 358 393 437842062 437842027 1.130000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G328600 chr4A 614105743 614109525 3782 True 1909.250000 6986 92.821000 1 3783 4 chr4A.!!$R4 3782
1 TraesCS4A01G328600 chr5D 554474001 554477565 3564 False 1053.000000 1482 89.430250 304 3762 4 chr5D.!!$F2 3458
2 TraesCS4A01G328600 chr5B 696187879 696192056 4177 True 758.666667 1332 89.706833 127 3768 6 chr5B.!!$R1 3641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.035176 GCCCTCCAGCAATGCAAAAA 59.965 50.0 8.35 0.0 0.0 1.94 F
802 832 0.373716 CATTAGTCGGCCAAGCGTTC 59.626 55.0 2.24 0.0 0.0 3.95 F
1221 1273 0.038159 CGGAGGAGAAGACAAGCGTT 60.038 55.0 0.00 0.0 0.0 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1202 1254 0.038159 AACGCTTGTCTTCTCCTCCG 60.038 55.0 0.00 0.0 0.00 4.63 R
2616 3222 0.321034 ATGTCAGCGAGCAAGCAGAA 60.321 50.0 6.21 0.0 40.15 3.02 R
3139 3880 0.033601 AGTGGTTTCACAGGCACCAA 60.034 50.0 0.00 0.0 45.91 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.941210 TTGATGACAACCGGGAAGC 58.059 52.632 6.32 0.00 0.00 3.86
21 22 0.109532 TTGATGACAACCGGGAAGCA 59.890 50.000 6.32 0.00 0.00 3.91
22 23 0.321564 TGATGACAACCGGGAAGCAG 60.322 55.000 6.32 0.00 0.00 4.24
23 24 0.321653 GATGACAACCGGGAAGCAGT 60.322 55.000 6.32 0.00 0.00 4.40
24 25 0.606401 ATGACAACCGGGAAGCAGTG 60.606 55.000 6.32 0.00 0.00 3.66
25 26 1.070786 GACAACCGGGAAGCAGTGA 59.929 57.895 6.32 0.00 0.00 3.41
26 27 1.227853 ACAACCGGGAAGCAGTGAC 60.228 57.895 6.32 0.00 0.00 3.67
27 28 2.030562 AACCGGGAAGCAGTGACG 59.969 61.111 6.32 0.00 0.00 4.35
28 29 2.504274 AACCGGGAAGCAGTGACGA 61.504 57.895 6.32 0.00 0.00 4.20
29 30 2.035237 AACCGGGAAGCAGTGACGAA 62.035 55.000 6.32 0.00 0.00 3.85
30 31 1.079127 CCGGGAAGCAGTGACGAAT 60.079 57.895 0.00 0.00 0.00 3.34
31 32 1.084370 CCGGGAAGCAGTGACGAATC 61.084 60.000 0.00 0.00 0.00 2.52
32 33 0.389817 CGGGAAGCAGTGACGAATCA 60.390 55.000 0.00 0.00 0.00 2.57
33 34 1.808411 GGGAAGCAGTGACGAATCAA 58.192 50.000 0.00 0.00 36.31 2.57
34 35 1.464997 GGGAAGCAGTGACGAATCAAC 59.535 52.381 0.00 0.00 36.31 3.18
35 36 2.417719 GGAAGCAGTGACGAATCAACT 58.582 47.619 0.00 0.00 36.31 3.16
36 37 2.158449 GGAAGCAGTGACGAATCAACTG 59.842 50.000 0.00 4.06 36.31 3.16
37 38 1.800805 AGCAGTGACGAATCAACTGG 58.199 50.000 0.00 0.00 36.31 4.00
38 39 1.344438 AGCAGTGACGAATCAACTGGA 59.656 47.619 0.00 0.00 36.31 3.86
39 40 2.027745 AGCAGTGACGAATCAACTGGAT 60.028 45.455 0.00 0.00 36.31 3.41
40 41 2.094894 GCAGTGACGAATCAACTGGATG 59.905 50.000 0.00 0.00 36.31 3.51
41 42 2.674852 CAGTGACGAATCAACTGGATGG 59.325 50.000 0.00 0.00 36.31 3.51
42 43 2.009774 GTGACGAATCAACTGGATGGG 58.990 52.381 0.00 0.00 36.31 4.00
43 44 1.017387 GACGAATCAACTGGATGGGC 58.983 55.000 0.00 0.00 36.02 5.36
44 45 0.620556 ACGAATCAACTGGATGGGCT 59.379 50.000 0.00 0.00 36.02 5.19
45 46 1.004745 ACGAATCAACTGGATGGGCTT 59.995 47.619 0.00 0.00 36.02 4.35
46 47 2.094675 CGAATCAACTGGATGGGCTTT 58.905 47.619 0.00 0.00 36.02 3.51
47 48 3.278574 CGAATCAACTGGATGGGCTTTA 58.721 45.455 0.00 0.00 36.02 1.85
48 49 3.694072 CGAATCAACTGGATGGGCTTTAA 59.306 43.478 0.00 0.00 36.02 1.52
49 50 4.339247 CGAATCAACTGGATGGGCTTTAAT 59.661 41.667 0.00 0.00 36.02 1.40
50 51 5.530915 CGAATCAACTGGATGGGCTTTAATA 59.469 40.000 0.00 0.00 36.02 0.98
51 52 6.293626 CGAATCAACTGGATGGGCTTTAATAG 60.294 42.308 0.00 0.00 36.02 1.73
52 53 4.792068 TCAACTGGATGGGCTTTAATAGG 58.208 43.478 0.00 0.00 0.00 2.57
53 54 7.645842 AATCAACTGGATGGGCTTTAATAGGC 61.646 42.308 0.00 0.00 41.18 3.93
54 55 9.726771 AATCAACTGGATGGGCTTTAATAGGCT 62.727 40.741 0.00 0.00 41.45 4.58
69 70 4.039092 GCTTGAGCCTGCCCTCCA 62.039 66.667 0.00 0.00 34.31 3.86
70 71 2.271497 CTTGAGCCTGCCCTCCAG 59.729 66.667 0.00 0.00 41.41 3.86
71 72 3.991725 CTTGAGCCTGCCCTCCAGC 62.992 68.421 0.00 0.00 40.36 4.85
73 74 4.039092 GAGCCTGCCCTCCAGCAA 62.039 66.667 0.00 0.00 43.52 3.91
74 75 3.345028 AGCCTGCCCTCCAGCAAT 61.345 61.111 0.00 0.00 43.52 3.56
75 76 3.145551 GCCTGCCCTCCAGCAATG 61.146 66.667 0.00 0.00 43.52 2.82
76 77 3.145551 CCTGCCCTCCAGCAATGC 61.146 66.667 0.00 0.00 43.52 3.56
77 78 2.361992 CTGCCCTCCAGCAATGCA 60.362 61.111 8.35 0.00 43.52 3.96
78 79 1.980232 CTGCCCTCCAGCAATGCAA 60.980 57.895 8.35 0.00 43.52 4.08
79 80 1.533513 TGCCCTCCAGCAATGCAAA 60.534 52.632 8.35 0.00 40.56 3.68
80 81 1.120184 TGCCCTCCAGCAATGCAAAA 61.120 50.000 8.35 0.00 40.56 2.44
81 82 0.035176 GCCCTCCAGCAATGCAAAAA 59.965 50.000 8.35 0.00 0.00 1.94
114 115 8.986929 AGTAGTTAATAGTATACGTTCCCAGT 57.013 34.615 0.00 0.00 0.00 4.00
117 118 8.986929 AGTTAATAGTATACGTTCCCAGTAGT 57.013 34.615 0.00 0.00 0.00 2.73
124 125 8.345724 AGTATACGTTCCCAGTAGTATTATGG 57.654 38.462 0.00 0.00 32.71 2.74
125 126 4.332428 ACGTTCCCAGTAGTATTATGGC 57.668 45.455 0.00 0.00 32.46 4.40
163 164 8.123445 CTTTCAACAAAAGAATTGAGAGTTGG 57.877 34.615 0.00 0.00 46.18 3.77
167 168 4.956075 ACAAAAGAATTGAGAGTTGGTGGT 59.044 37.500 0.00 0.00 0.00 4.16
171 172 5.520376 AGAATTGAGAGTTGGTGGTTTTG 57.480 39.130 0.00 0.00 0.00 2.44
194 197 3.955771 TTCACACCGTTAACTTTGAGC 57.044 42.857 3.71 0.00 0.00 4.26
196 199 1.265905 CACACCGTTAACTTTGAGCCC 59.734 52.381 3.71 0.00 0.00 5.19
210 213 1.095600 GAGCCCGTCCTTGATTTTCC 58.904 55.000 0.00 0.00 0.00 3.13
231 234 1.741401 CAAGATTCGCCACTGCCGA 60.741 57.895 0.00 0.00 0.00 5.54
235 238 1.424493 GATTCGCCACTGCCGAGAAG 61.424 60.000 0.00 0.00 35.96 2.85
249 252 1.388093 CGAGAAGTCTTCATGCACGTG 59.612 52.381 12.28 12.28 0.00 4.49
257 260 0.676466 TTCATGCACGTGCCCCTAAG 60.676 55.000 35.72 18.89 41.18 2.18
258 261 2.114670 CATGCACGTGCCCCTAAGG 61.115 63.158 35.72 16.27 41.18 2.69
268 271 4.587056 CCCTAAGGGCCAATGCTC 57.413 61.111 6.18 0.00 35.35 4.26
281 284 3.386402 GCCAATGCTCTAGAGAGGTAGTT 59.614 47.826 24.24 5.13 42.29 2.24
284 287 2.379972 TGCTCTAGAGAGGTAGTTGCC 58.620 52.381 24.24 1.96 42.29 4.52
299 310 2.159198 AGTTGCCGCCATTGAATCATTC 60.159 45.455 0.00 0.00 0.00 2.67
301 312 2.929641 TGCCGCCATTGAATCATTCTA 58.070 42.857 0.00 0.00 0.00 2.10
378 389 4.463879 CCGGAGTGGCAGGCAGAG 62.464 72.222 0.00 0.00 0.00 3.35
379 390 4.463879 CGGAGTGGCAGGCAGAGG 62.464 72.222 0.00 0.00 0.00 3.69
380 391 4.106925 GGAGTGGCAGGCAGAGGG 62.107 72.222 0.00 0.00 0.00 4.30
381 392 4.106925 GAGTGGCAGGCAGAGGGG 62.107 72.222 0.00 0.00 0.00 4.79
382 393 4.664267 AGTGGCAGGCAGAGGGGA 62.664 66.667 0.00 0.00 0.00 4.81
383 394 4.106925 GTGGCAGGCAGAGGGGAG 62.107 72.222 0.00 0.00 0.00 4.30
386 397 3.478274 GCAGGCAGAGGGGAGGAG 61.478 72.222 0.00 0.00 0.00 3.69
387 398 2.366167 CAGGCAGAGGGGAGGAGA 59.634 66.667 0.00 0.00 0.00 3.71
422 445 1.274712 GATGGAGCTATGAGGGGAGG 58.725 60.000 0.00 0.00 0.00 4.30
433 456 0.988063 GAGGGGAGGAGAACTTTGCT 59.012 55.000 0.00 0.00 0.00 3.91
434 457 0.695347 AGGGGAGGAGAACTTTGCTG 59.305 55.000 0.00 0.00 0.00 4.41
440 463 1.003696 AGGAGAACTTTGCTGTAGCCC 59.996 52.381 0.80 0.00 41.18 5.19
450 473 1.742768 CTGTAGCCCCCTTAGCTCG 59.257 63.158 0.00 0.00 41.83 5.03
465 488 2.992593 AGCTCGAGGGAAAGGAAAATC 58.007 47.619 15.58 0.00 0.00 2.17
485 509 3.283751 TCCCATTTCGTGTTGTCTTGTT 58.716 40.909 0.00 0.00 0.00 2.83
551 575 8.360390 AGACATTTTTAGGTCATGAGGTTTTTC 58.640 33.333 0.00 0.00 36.50 2.29
552 576 7.441836 ACATTTTTAGGTCATGAGGTTTTTCC 58.558 34.615 0.00 0.00 0.00 3.13
568 596 2.743636 TTCCGAGTCGCTTGAGAAAT 57.256 45.000 7.12 0.00 0.00 2.17
577 605 4.997395 AGTCGCTTGAGAAATAAGAAAGCA 59.003 37.500 6.52 0.00 42.63 3.91
588 616 8.215899 AGAAATAAGAAAGCAATTCGTTTTCG 57.784 30.769 14.32 0.00 46.27 3.46
604 632 4.965062 GTTTTCGACTCGGCAATATGAAA 58.035 39.130 0.00 0.00 0.00 2.69
605 633 4.857871 TTTCGACTCGGCAATATGAAAG 57.142 40.909 0.00 0.00 0.00 2.62
606 634 2.201732 TCGACTCGGCAATATGAAAGC 58.798 47.619 0.00 0.00 0.00 3.51
607 635 1.261619 CGACTCGGCAATATGAAAGCC 59.738 52.381 0.00 0.00 44.89 4.35
683 712 9.060347 TCTCATGGAATGCATAGAAATAAGTTC 57.940 33.333 0.00 0.00 46.21 3.01
684 713 8.985315 TCATGGAATGCATAGAAATAAGTTCT 57.015 30.769 0.00 0.00 46.21 3.01
710 740 9.796120 TTTTCTTGTGGTAAGTAAACATTCTTG 57.204 29.630 0.00 0.00 0.00 3.02
802 832 0.373716 CATTAGTCGGCCAAGCGTTC 59.626 55.000 2.24 0.00 0.00 3.95
820 850 0.609662 TCCTATATAAACCGCCGGGC 59.390 55.000 8.57 9.54 36.48 6.13
879 916 1.227853 GGTTGGTTGGTCGCACTCT 60.228 57.895 0.00 0.00 0.00 3.24
934 974 1.133041 TCCCCATCATCGTCATCCTCT 60.133 52.381 0.00 0.00 0.00 3.69
1037 1077 1.144708 TCAGGAGCCACATGTTTTCCA 59.855 47.619 17.71 1.18 0.00 3.53
1054 1097 0.603707 CCAGCTTCCTTCTTGCGTGA 60.604 55.000 0.00 0.00 0.00 4.35
1139 1191 0.776810 TGGATTGTTTGGGCAGAGGA 59.223 50.000 0.00 0.00 0.00 3.71
1141 1193 0.813821 GATTGTTTGGGCAGAGGAGC 59.186 55.000 0.00 0.00 0.00 4.70
1185 1237 4.785453 GAGCAGCCTTCCCCCGTG 62.785 72.222 0.00 0.00 0.00 4.94
1214 1266 4.516195 GCCGGCGGAGGAGAAGAC 62.516 72.222 33.44 4.02 0.00 3.01
1215 1267 3.068691 CCGGCGGAGGAGAAGACA 61.069 66.667 24.41 0.00 0.00 3.41
1216 1268 2.646175 CCGGCGGAGGAGAAGACAA 61.646 63.158 24.41 0.00 0.00 3.18
1217 1269 1.153745 CGGCGGAGGAGAAGACAAG 60.154 63.158 0.00 0.00 0.00 3.16
1218 1270 1.448717 GGCGGAGGAGAAGACAAGC 60.449 63.158 0.00 0.00 0.00 4.01
1219 1271 1.807573 GCGGAGGAGAAGACAAGCG 60.808 63.158 0.00 0.00 0.00 4.68
1220 1272 1.587054 CGGAGGAGAAGACAAGCGT 59.413 57.895 0.00 0.00 0.00 5.07
1221 1273 0.038159 CGGAGGAGAAGACAAGCGTT 60.038 55.000 0.00 0.00 0.00 4.84
1222 1274 1.201647 CGGAGGAGAAGACAAGCGTTA 59.798 52.381 0.00 0.00 0.00 3.18
1223 1275 2.352421 CGGAGGAGAAGACAAGCGTTAA 60.352 50.000 0.00 0.00 0.00 2.01
1224 1276 3.254892 GGAGGAGAAGACAAGCGTTAAG 58.745 50.000 0.00 0.00 0.00 1.85
1225 1277 3.254892 GAGGAGAAGACAAGCGTTAAGG 58.745 50.000 0.00 0.00 0.00 2.69
1226 1278 1.732809 GGAGAAGACAAGCGTTAAGGC 59.267 52.381 12.17 12.17 0.00 4.35
1227 1279 1.732809 GAGAAGACAAGCGTTAAGGCC 59.267 52.381 16.15 0.00 0.00 5.19
1228 1280 0.442699 GAAGACAAGCGTTAAGGCCG 59.557 55.000 16.15 10.53 0.00 6.13
1229 1281 0.250166 AAGACAAGCGTTAAGGCCGT 60.250 50.000 16.15 13.54 0.00 5.68
1230 1282 0.949105 AGACAAGCGTTAAGGCCGTG 60.949 55.000 16.15 16.02 0.00 4.94
1231 1283 1.908066 GACAAGCGTTAAGGCCGTGG 61.908 60.000 16.15 6.49 0.00 4.94
1232 1284 1.669760 CAAGCGTTAAGGCCGTGGA 60.670 57.895 16.15 0.00 0.00 4.02
1233 1285 1.375523 AAGCGTTAAGGCCGTGGAG 60.376 57.895 16.15 0.00 0.00 3.86
1234 1286 2.798148 AAGCGTTAAGGCCGTGGAGG 62.798 60.000 16.15 0.00 44.97 4.30
1235 1287 2.975536 CGTTAAGGCCGTGGAGGA 59.024 61.111 0.00 0.00 45.00 3.71
1236 1288 1.153628 CGTTAAGGCCGTGGAGGAG 60.154 63.158 0.00 0.00 45.00 3.69
1237 1289 1.449778 GTTAAGGCCGTGGAGGAGC 60.450 63.158 0.00 0.00 45.00 4.70
1241 1293 4.475135 GGCCGTGGAGGAGCCTTC 62.475 72.222 0.00 0.00 45.00 3.46
1242 1294 4.475135 GCCGTGGAGGAGCCTTCC 62.475 72.222 0.00 0.00 45.00 3.46
1243 1295 3.787001 CCGTGGAGGAGCCTTCCC 61.787 72.222 0.00 0.00 45.24 3.97
1275 1327 3.068691 CCGGCGGAGGAGAAGACA 61.069 66.667 24.41 0.00 0.00 3.41
1281 1333 0.038159 CGGAGGAGAAGACAAGCGTT 60.038 55.000 0.00 0.00 0.00 4.84
1485 1540 5.743026 TGAACTTGCTCAACGTAATCAAA 57.257 34.783 0.00 0.00 0.00 2.69
1486 1541 5.747565 TGAACTTGCTCAACGTAATCAAAG 58.252 37.500 0.00 0.00 0.00 2.77
1487 1542 4.147219 ACTTGCTCAACGTAATCAAAGC 57.853 40.909 0.00 0.00 0.00 3.51
1488 1543 3.815401 ACTTGCTCAACGTAATCAAAGCT 59.185 39.130 0.00 0.00 0.00 3.74
1489 1544 4.994852 ACTTGCTCAACGTAATCAAAGCTA 59.005 37.500 0.00 0.00 0.00 3.32
1521 1582 7.212274 AGCATTTTACAGTTTCTGCAGAATTT 58.788 30.769 28.89 17.22 34.37 1.82
1543 1604 3.058016 TGCAATACTCTGTTTTGCTCTGC 60.058 43.478 20.15 0.00 45.65 4.26
1580 2138 7.680442 TGAGATACAAATTTGAATCGGTTGA 57.320 32.000 24.64 0.00 0.00 3.18
1603 2161 3.747099 ATTTGCTTCGATTTCACGGAG 57.253 42.857 0.00 0.00 41.28 4.63
1630 2208 4.952071 TTGAATCCTGAATTTTGTGGCA 57.048 36.364 0.00 0.00 0.00 4.92
2038 2631 2.016604 GCCGCCATGATGAAGTAACCA 61.017 52.381 0.00 0.00 0.00 3.67
2045 2638 3.981071 TGATGAAGTAACCACCTCCTG 57.019 47.619 0.00 0.00 0.00 3.86
2047 2640 3.260884 TGATGAAGTAACCACCTCCTGAC 59.739 47.826 0.00 0.00 0.00 3.51
2052 2645 2.158143 AGTAACCACCTCCTGACCTTCT 60.158 50.000 0.00 0.00 0.00 2.85
2053 2646 1.353091 AACCACCTCCTGACCTTCTC 58.647 55.000 0.00 0.00 0.00 2.87
2054 2647 0.900647 ACCACCTCCTGACCTTCTCG 60.901 60.000 0.00 0.00 0.00 4.04
2055 2648 1.216710 CACCTCCTGACCTTCTCGC 59.783 63.158 0.00 0.00 0.00 5.03
2057 2650 2.492090 CTCCTGACCTTCTCGCCG 59.508 66.667 0.00 0.00 0.00 6.46
2058 2651 3.708220 CTCCTGACCTTCTCGCCGC 62.708 68.421 0.00 0.00 0.00 6.53
2059 2652 3.764466 CCTGACCTTCTCGCCGCT 61.764 66.667 0.00 0.00 0.00 5.52
2060 2653 2.202676 CTGACCTTCTCGCCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
2061 2654 2.676822 TGACCTTCTCGCCGCTCT 60.677 61.111 0.00 0.00 0.00 4.09
2062 2655 2.103340 GACCTTCTCGCCGCTCTC 59.897 66.667 0.00 0.00 0.00 3.20
2075 2668 4.821589 CTCTCCGGCCGCCTCAAC 62.822 72.222 22.85 0.00 0.00 3.18
2077 2670 4.473520 CTCCGGCCGCCTCAACAT 62.474 66.667 22.85 0.00 0.00 2.71
2078 2671 3.976701 CTCCGGCCGCCTCAACATT 62.977 63.158 22.85 0.00 0.00 2.71
2079 2672 3.508840 CCGGCCGCCTCAACATTC 61.509 66.667 22.85 0.00 0.00 2.67
2080 2673 3.508840 CGGCCGCCTCAACATTCC 61.509 66.667 14.67 0.00 0.00 3.01
2085 2678 1.369091 CCGCCTCAACATTCCTTCCG 61.369 60.000 0.00 0.00 0.00 4.30
2087 2680 1.982073 GCCTCAACATTCCTTCCGCG 61.982 60.000 0.00 0.00 0.00 6.46
2088 2681 0.673644 CCTCAACATTCCTTCCGCGT 60.674 55.000 4.92 0.00 0.00 6.01
2089 2682 1.404986 CCTCAACATTCCTTCCGCGTA 60.405 52.381 4.92 0.00 0.00 4.42
2112 2705 1.518572 ATCGTCAATGGCGGTCGAC 60.519 57.895 7.59 7.13 33.55 4.20
2122 2715 1.359459 GGCGGTCGACCAATCTTGAC 61.359 60.000 32.80 15.01 35.14 3.18
2124 2717 1.068474 CGGTCGACCAATCTTGACAC 58.932 55.000 32.80 2.71 35.14 3.67
2127 2720 0.677288 TCGACCAATCTTGACACCGT 59.323 50.000 0.00 0.00 0.00 4.83
2201 2794 3.991318 GCAATGGGGGTGGGTCCA 61.991 66.667 0.00 0.00 38.11 4.02
2204 2797 2.324560 AATGGGGGTGGGTCCATCC 61.325 63.158 10.79 10.79 46.13 3.51
2246 2839 1.827789 CGAGGCAGAGGAGGAGGAG 60.828 68.421 0.00 0.00 0.00 3.69
2270 2863 4.699522 GTTGCCGGCGAGGAAGGT 62.700 66.667 23.90 0.00 45.00 3.50
2605 3211 3.281395 CGCCGCCATGCATGATCA 61.281 61.111 28.31 0.00 0.00 2.92
2612 3218 1.000607 GCCATGCATGATCACATCACC 60.001 52.381 28.31 0.00 43.01 4.02
2613 3219 2.583143 CCATGCATGATCACATCACCT 58.417 47.619 28.31 0.00 43.01 4.00
2614 3220 2.293399 CCATGCATGATCACATCACCTG 59.707 50.000 28.31 2.27 43.01 4.00
2615 3221 1.385528 TGCATGATCACATCACCTGC 58.614 50.000 0.00 2.51 43.01 4.85
2616 3222 1.064979 TGCATGATCACATCACCTGCT 60.065 47.619 14.40 0.00 42.72 4.24
2617 3223 2.022195 GCATGATCACATCACCTGCTT 58.978 47.619 0.00 0.00 43.01 3.91
2794 3409 3.507009 GTCTAGACGCCGTCGCCT 61.507 66.667 12.13 0.00 37.67 5.52
2795 3410 3.200593 TCTAGACGCCGTCGCCTC 61.201 66.667 12.13 0.00 37.67 4.70
2796 3411 3.203412 CTAGACGCCGTCGCCTCT 61.203 66.667 12.13 0.00 37.67 3.69
2797 3412 3.170810 CTAGACGCCGTCGCCTCTC 62.171 68.421 12.13 0.00 37.67 3.20
2798 3413 3.677284 TAGACGCCGTCGCCTCTCT 62.677 63.158 12.13 0.00 37.67 3.10
2799 3414 4.838486 GACGCCGTCGCCTCTCTG 62.838 72.222 0.00 0.00 39.84 3.35
2802 3417 4.521062 GCCGTCGCCTCTCTGCAT 62.521 66.667 0.00 0.00 0.00 3.96
2803 3418 3.120105 CCGTCGCCTCTCTGCATA 58.880 61.111 0.00 0.00 0.00 3.14
2805 3420 1.655654 CGTCGCCTCTCTGCATACG 60.656 63.158 0.00 0.00 35.08 3.06
2806 3421 1.946650 GTCGCCTCTCTGCATACGC 60.947 63.158 0.00 0.00 39.24 4.42
2807 3422 2.659897 CGCCTCTCTGCATACGCC 60.660 66.667 0.00 0.00 37.32 5.68
2808 3423 2.501128 GCCTCTCTGCATACGCCA 59.499 61.111 0.00 0.00 37.32 5.69
2809 3424 1.070445 GCCTCTCTGCATACGCCAT 59.930 57.895 0.00 0.00 37.32 4.40
2810 3425 1.226686 GCCTCTCTGCATACGCCATG 61.227 60.000 0.00 0.00 37.32 3.66
2934 3566 6.801539 TCGGCTGTAATTCATATTTCATCC 57.198 37.500 0.00 0.00 29.19 3.51
3074 3714 8.271458 TCATGTTTCATAGTTTATCTTGGGCTA 58.729 33.333 0.00 0.00 0.00 3.93
3076 3716 7.398829 TGTTTCATAGTTTATCTTGGGCTACA 58.601 34.615 0.00 0.00 0.00 2.74
3077 3717 8.052748 TGTTTCATAGTTTATCTTGGGCTACAT 58.947 33.333 0.00 0.00 0.00 2.29
3078 3718 9.555727 GTTTCATAGTTTATCTTGGGCTACATA 57.444 33.333 0.00 0.00 0.00 2.29
3079 3719 9.778741 TTTCATAGTTTATCTTGGGCTACATAG 57.221 33.333 0.00 0.00 0.00 2.23
3095 3835 5.392380 GCTACATAGTTTCTGTGCTTGCATT 60.392 40.000 0.00 0.00 0.00 3.56
3098 3838 6.282930 ACATAGTTTCTGTGCTTGCATTTTT 58.717 32.000 0.00 0.00 0.00 1.94
3110 3850 7.026562 GTGCTTGCATTTTTACCTTTTGTTTT 58.973 30.769 0.00 0.00 0.00 2.43
3111 3851 7.218014 GTGCTTGCATTTTTACCTTTTGTTTTC 59.782 33.333 0.00 0.00 0.00 2.29
3112 3852 6.410625 GCTTGCATTTTTACCTTTTGTTTTCG 59.589 34.615 0.00 0.00 0.00 3.46
3114 3854 7.365840 TGCATTTTTACCTTTTGTTTTCGTT 57.634 28.000 0.00 0.00 0.00 3.85
3161 3902 2.084546 GGTGCCTGTGAAACCACTATC 58.915 52.381 0.00 0.00 35.63 2.08
3164 3905 2.637382 TGCCTGTGAAACCACTATCTGA 59.363 45.455 0.00 0.00 35.63 3.27
3165 3906 3.003480 GCCTGTGAAACCACTATCTGAC 58.997 50.000 0.00 0.00 35.63 3.51
3179 3920 7.448777 ACCACTATCTGACGTGTCATCTAATAT 59.551 37.037 2.72 0.00 39.13 1.28
3180 3921 8.947115 CCACTATCTGACGTGTCATCTAATATA 58.053 37.037 2.72 0.00 39.13 0.86
3204 3945 1.024271 CCAGATGGTTTATGTGGCGG 58.976 55.000 0.00 0.00 42.57 6.13
3232 3979 3.261981 ACCGCGATCCTTGTATCTTTT 57.738 42.857 8.23 0.00 0.00 2.27
3236 3983 3.865745 CGCGATCCTTGTATCTTTTGACT 59.134 43.478 0.00 0.00 0.00 3.41
3239 3986 4.034510 CGATCCTTGTATCTTTTGACTGCC 59.965 45.833 0.00 0.00 0.00 4.85
3240 3987 4.640771 TCCTTGTATCTTTTGACTGCCT 57.359 40.909 0.00 0.00 0.00 4.75
3242 3989 4.761739 TCCTTGTATCTTTTGACTGCCTTG 59.238 41.667 0.00 0.00 0.00 3.61
3243 3990 4.479619 CTTGTATCTTTTGACTGCCTTGC 58.520 43.478 0.00 0.00 0.00 4.01
3244 3991 3.754965 TGTATCTTTTGACTGCCTTGCT 58.245 40.909 0.00 0.00 0.00 3.91
3252 4007 8.574251 TCTTTTGACTGCCTTGCTTAATAATA 57.426 30.769 0.00 0.00 0.00 0.98
3318 4177 6.259743 TGTACACGACGTCTTTTAAAGTTC 57.740 37.500 14.70 0.00 0.00 3.01
3320 4179 5.783100 ACACGACGTCTTTTAAAGTTCAA 57.217 34.783 14.70 0.00 0.00 2.69
3325 4184 7.319615 CACGACGTCTTTTAAAGTTCAATAACC 59.680 37.037 14.70 0.00 36.15 2.85
3327 4186 7.319615 CGACGTCTTTTAAAGTTCAATAACCAC 59.680 37.037 14.70 0.00 36.15 4.16
3340 4199 8.492673 GTTCAATAACCACATCTGAACTATGA 57.507 34.615 6.10 0.00 41.59 2.15
3383 4242 1.502690 TATAGGATGCACAACCCGGT 58.497 50.000 0.00 0.00 0.00 5.28
3393 4252 2.939640 GCACAACCCGGTTATGAGATGT 60.940 50.000 12.96 0.00 0.00 3.06
3399 4258 3.181465 ACCCGGTTATGAGATGTAGCTTG 60.181 47.826 0.00 0.00 0.00 4.01
3405 4264 5.220739 GGTTATGAGATGTAGCTTGCACTTG 60.221 44.000 0.00 0.00 0.00 3.16
3411 4270 2.416747 TGTAGCTTGCACTTGTAGCTG 58.583 47.619 18.03 0.00 44.47 4.24
3415 4274 1.196354 GCTTGCACTTGTAGCTGTCTG 59.804 52.381 0.00 0.00 32.26 3.51
3433 4292 7.727017 GCTGTCTGCTTAATTTGAGAATTTTG 58.273 34.615 0.00 0.00 36.45 2.44
3443 4302 6.940430 ATTTGAGAATTTTGGGACCAAGAT 57.060 33.333 3.73 2.59 37.24 2.40
3448 4307 1.631405 TTTTGGGACCAAGATGCCTG 58.369 50.000 3.73 0.00 37.24 4.85
3449 4308 0.251742 TTTGGGACCAAGATGCCTGG 60.252 55.000 3.73 0.00 37.24 4.45
3495 4354 1.923356 GGAATGAAGCTTCCACCCAA 58.077 50.000 23.42 4.11 43.56 4.12
3496 4355 1.546029 GGAATGAAGCTTCCACCCAAC 59.454 52.381 23.42 7.90 43.56 3.77
3498 4357 0.779997 ATGAAGCTTCCACCCAACCT 59.220 50.000 23.42 0.00 0.00 3.50
3506 4365 1.228552 CCACCCAACCTGGTCCTTG 60.229 63.158 0.00 0.00 36.12 3.61
3507 4366 1.903404 CACCCAACCTGGTCCTTGC 60.903 63.158 0.00 0.00 36.12 4.01
3508 4367 2.283173 CCCAACCTGGTCCTTGCC 60.283 66.667 0.00 0.00 35.17 4.52
3509 4368 2.520458 CCAACCTGGTCCTTGCCA 59.480 61.111 0.00 0.00 36.97 4.92
3533 4392 5.343249 GCTTCTTTTTCACAAGCTCAAGAA 58.657 37.500 0.00 0.00 39.61 2.52
3582 4441 3.319122 GCAAAACCATCTTCTCCAACACT 59.681 43.478 0.00 0.00 0.00 3.55
3584 4443 5.335191 GCAAAACCATCTTCTCCAACACTAG 60.335 44.000 0.00 0.00 0.00 2.57
3585 4444 5.568620 AAACCATCTTCTCCAACACTAGT 57.431 39.130 0.00 0.00 0.00 2.57
3587 4446 3.265791 CCATCTTCTCCAACACTAGTGC 58.734 50.000 22.90 0.00 0.00 4.40
3588 4447 3.306989 CCATCTTCTCCAACACTAGTGCA 60.307 47.826 22.90 3.67 0.00 4.57
3589 4448 3.667497 TCTTCTCCAACACTAGTGCAG 57.333 47.619 22.90 14.67 0.00 4.41
3590 4449 2.072298 CTTCTCCAACACTAGTGCAGC 58.928 52.381 22.90 0.00 0.00 5.25
3591 4450 1.342074 TCTCCAACACTAGTGCAGCT 58.658 50.000 22.90 0.00 0.00 4.24
3593 4452 0.603707 TCCAACACTAGTGCAGCTGC 60.604 55.000 31.89 31.89 42.50 5.25
3604 4465 3.132139 CAGCTGCGCATGGCTCTT 61.132 61.111 20.09 0.00 44.05 2.85
3609 4470 2.437359 GCGCATGGCTCTTGAGGT 60.437 61.111 0.30 0.00 39.11 3.85
3617 4478 1.988107 TGGCTCTTGAGGTCATCCTTT 59.012 47.619 0.00 0.00 45.24 3.11
3620 4481 2.617532 GCTCTTGAGGTCATCCTTTGCT 60.618 50.000 0.00 0.00 45.24 3.91
3622 4483 3.679389 TCTTGAGGTCATCCTTTGCTTC 58.321 45.455 0.00 0.00 45.24 3.86
3626 4487 3.450817 TGAGGTCATCCTTTGCTTCGATA 59.549 43.478 0.00 0.00 45.24 2.92
3635 4496 1.388547 TTGCTTCGATATGGCCCAAC 58.611 50.000 0.00 0.00 0.00 3.77
3636 4497 0.254462 TGCTTCGATATGGCCCAACA 59.746 50.000 0.00 0.00 0.00 3.33
3637 4498 1.340502 TGCTTCGATATGGCCCAACAA 60.341 47.619 0.00 0.00 0.00 2.83
3638 4499 1.748493 GCTTCGATATGGCCCAACAAA 59.252 47.619 0.00 0.00 0.00 2.83
3667 4528 6.874288 AAGAGTGCTTTTATATGGATGAGC 57.126 37.500 0.00 0.00 0.00 4.26
3688 4549 3.182967 CGGGATCTCAAGAAAAGACTCG 58.817 50.000 0.00 0.00 0.00 4.18
3709 4570 4.750098 TCGAAAGAAGAGTGCTTGGTTTAG 59.250 41.667 0.00 0.00 37.03 1.85
3729 4590 6.648879 TTAGCCATTTTTAAGAGTGCTTGT 57.351 33.333 0.00 0.00 35.56 3.16
3732 4593 7.232118 AGCCATTTTTAAGAGTGCTTGTAAT 57.768 32.000 0.00 0.00 35.56 1.89
3743 4604 1.901159 TGCTTGTAATGGGCAATGCTT 59.099 42.857 4.82 0.00 32.79 3.91
3752 4613 5.881923 AATGGGCAATGCTTCAGAATTAT 57.118 34.783 4.82 0.00 0.00 1.28
3753 4614 5.881923 ATGGGCAATGCTTCAGAATTATT 57.118 34.783 4.82 0.00 0.00 1.40
3768 4629 8.682936 TCAGAATTATTAATCTGAAGAAGGGC 57.317 34.615 4.39 0.00 46.67 5.19
3769 4630 7.442364 TCAGAATTATTAATCTGAAGAAGGGCG 59.558 37.037 4.39 0.00 46.67 6.13
3770 4631 7.442364 CAGAATTATTAATCTGAAGAAGGGCGA 59.558 37.037 0.00 0.00 44.64 5.54
3771 4632 7.442666 AGAATTATTAATCTGAAGAAGGGCGAC 59.557 37.037 0.00 0.00 0.00 5.19
3772 4633 2.579207 TAATCTGAAGAAGGGCGACG 57.421 50.000 0.00 0.00 0.00 5.12
3773 4634 0.741221 AATCTGAAGAAGGGCGACGC 60.741 55.000 12.43 12.43 0.00 5.19
3774 4635 1.888436 ATCTGAAGAAGGGCGACGCA 61.888 55.000 23.09 0.00 0.00 5.24
3775 4636 1.667830 CTGAAGAAGGGCGACGCAA 60.668 57.895 23.09 0.00 0.00 4.85
3776 4637 1.227704 TGAAGAAGGGCGACGCAAA 60.228 52.632 23.09 0.00 0.00 3.68
3777 4638 1.206831 GAAGAAGGGCGACGCAAAC 59.793 57.895 23.09 11.15 0.00 2.93
3778 4639 1.503818 GAAGAAGGGCGACGCAAACA 61.504 55.000 23.09 0.00 0.00 2.83
3779 4640 1.782028 AAGAAGGGCGACGCAAACAC 61.782 55.000 23.09 8.51 0.00 3.32
3780 4641 2.203153 AAGGGCGACGCAAACACT 60.203 55.556 23.09 8.20 0.00 3.55
3781 4642 0.947180 GAAGGGCGACGCAAACACTA 60.947 55.000 23.09 0.00 0.00 2.74
3782 4643 0.533308 AAGGGCGACGCAAACACTAA 60.533 50.000 23.09 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.109532 TGCTTCCCGGTTGTCATCAA 59.890 50.000 0.00 0.00 0.00 2.57
3 4 0.321564 CTGCTTCCCGGTTGTCATCA 60.322 55.000 0.00 0.00 0.00 3.07
4 5 0.321653 ACTGCTTCCCGGTTGTCATC 60.322 55.000 0.00 0.00 0.00 2.92
5 6 0.606401 CACTGCTTCCCGGTTGTCAT 60.606 55.000 0.00 0.00 0.00 3.06
6 7 1.227823 CACTGCTTCCCGGTTGTCA 60.228 57.895 0.00 0.00 0.00 3.58
7 8 1.070786 TCACTGCTTCCCGGTTGTC 59.929 57.895 0.00 0.00 0.00 3.18
8 9 1.227853 GTCACTGCTTCCCGGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
9 10 2.317609 CGTCACTGCTTCCCGGTTG 61.318 63.158 0.00 0.00 0.00 3.77
10 11 2.030562 CGTCACTGCTTCCCGGTT 59.969 61.111 0.00 0.00 0.00 4.44
11 12 1.827399 ATTCGTCACTGCTTCCCGGT 61.827 55.000 0.00 0.00 0.00 5.28
12 13 1.079127 ATTCGTCACTGCTTCCCGG 60.079 57.895 0.00 0.00 0.00 5.73
13 14 0.389817 TGATTCGTCACTGCTTCCCG 60.390 55.000 0.00 0.00 0.00 5.14
14 15 1.464997 GTTGATTCGTCACTGCTTCCC 59.535 52.381 0.00 0.00 0.00 3.97
15 16 2.158449 CAGTTGATTCGTCACTGCTTCC 59.842 50.000 0.00 0.00 0.00 3.46
16 17 2.158449 CCAGTTGATTCGTCACTGCTTC 59.842 50.000 5.38 0.00 0.00 3.86
17 18 2.146342 CCAGTTGATTCGTCACTGCTT 58.854 47.619 5.38 0.00 0.00 3.91
18 19 1.344438 TCCAGTTGATTCGTCACTGCT 59.656 47.619 5.38 0.00 0.00 4.24
19 20 1.795768 TCCAGTTGATTCGTCACTGC 58.204 50.000 5.38 0.00 0.00 4.40
20 21 2.674852 CCATCCAGTTGATTCGTCACTG 59.325 50.000 4.30 4.30 0.00 3.66
21 22 2.355108 CCCATCCAGTTGATTCGTCACT 60.355 50.000 0.00 0.00 0.00 3.41
22 23 2.009774 CCCATCCAGTTGATTCGTCAC 58.990 52.381 0.00 0.00 0.00 3.67
23 24 1.678728 GCCCATCCAGTTGATTCGTCA 60.679 52.381 0.00 0.00 0.00 4.35
24 25 1.017387 GCCCATCCAGTTGATTCGTC 58.983 55.000 0.00 0.00 0.00 4.20
25 26 0.620556 AGCCCATCCAGTTGATTCGT 59.379 50.000 0.00 0.00 0.00 3.85
26 27 1.755179 AAGCCCATCCAGTTGATTCG 58.245 50.000 0.00 0.00 0.00 3.34
27 28 5.859205 ATTAAAGCCCATCCAGTTGATTC 57.141 39.130 0.00 0.00 0.00 2.52
28 29 5.835280 CCTATTAAAGCCCATCCAGTTGATT 59.165 40.000 0.00 0.00 0.00 2.57
29 30 5.388654 CCTATTAAAGCCCATCCAGTTGAT 58.611 41.667 0.00 0.00 0.00 2.57
30 31 4.792068 CCTATTAAAGCCCATCCAGTTGA 58.208 43.478 0.00 0.00 0.00 3.18
31 32 3.319122 GCCTATTAAAGCCCATCCAGTTG 59.681 47.826 0.00 0.00 0.00 3.16
32 33 3.205282 AGCCTATTAAAGCCCATCCAGTT 59.795 43.478 0.00 0.00 0.00 3.16
33 34 2.785857 AGCCTATTAAAGCCCATCCAGT 59.214 45.455 0.00 0.00 0.00 4.00
34 35 3.515602 AGCCTATTAAAGCCCATCCAG 57.484 47.619 0.00 0.00 0.00 3.86
35 36 3.204158 TCAAGCCTATTAAAGCCCATCCA 59.796 43.478 0.00 0.00 0.00 3.41
36 37 3.823304 CTCAAGCCTATTAAAGCCCATCC 59.177 47.826 0.00 0.00 0.00 3.51
37 38 3.254411 GCTCAAGCCTATTAAAGCCCATC 59.746 47.826 0.00 0.00 34.31 3.51
38 39 3.225940 GCTCAAGCCTATTAAAGCCCAT 58.774 45.455 0.00 0.00 34.31 4.00
39 40 2.654863 GCTCAAGCCTATTAAAGCCCA 58.345 47.619 0.00 0.00 34.31 5.36
52 53 3.991725 CTGGAGGGCAGGCTCAAGC 62.992 68.421 0.00 0.00 41.14 4.01
53 54 2.271497 CTGGAGGGCAGGCTCAAG 59.729 66.667 0.00 0.00 0.00 3.02
54 55 4.039092 GCTGGAGGGCAGGCTCAA 62.039 66.667 0.00 0.00 0.00 3.02
56 57 3.355957 ATTGCTGGAGGGCAGGCTC 62.356 63.158 0.00 0.00 43.39 4.70
57 58 3.345028 ATTGCTGGAGGGCAGGCT 61.345 61.111 0.00 0.00 43.39 4.58
58 59 3.145551 CATTGCTGGAGGGCAGGC 61.146 66.667 0.00 0.00 43.39 4.85
59 60 3.145551 GCATTGCTGGAGGGCAGG 61.146 66.667 0.16 0.00 43.39 4.85
60 61 1.537814 TTTGCATTGCTGGAGGGCAG 61.538 55.000 10.49 0.00 43.39 4.85
61 62 1.120184 TTTTGCATTGCTGGAGGGCA 61.120 50.000 10.49 0.00 40.74 5.36
62 63 0.035176 TTTTTGCATTGCTGGAGGGC 59.965 50.000 10.49 0.00 0.00 5.19
89 90 8.986929 ACTGGGAACGTATACTATTAACTACT 57.013 34.615 0.56 0.00 0.00 2.57
92 93 8.986929 ACTACTGGGAACGTATACTATTAACT 57.013 34.615 0.56 0.00 0.00 2.24
98 99 9.453572 CCATAATACTACTGGGAACGTATACTA 57.546 37.037 0.56 0.00 0.00 1.82
99 100 7.094032 GCCATAATACTACTGGGAACGTATACT 60.094 40.741 0.56 0.00 0.00 2.12
100 101 7.031975 GCCATAATACTACTGGGAACGTATAC 58.968 42.308 0.00 0.00 0.00 1.47
101 102 6.720748 TGCCATAATACTACTGGGAACGTATA 59.279 38.462 0.00 0.00 0.00 1.47
102 103 5.541101 TGCCATAATACTACTGGGAACGTAT 59.459 40.000 0.00 0.00 0.00 3.06
103 104 4.894705 TGCCATAATACTACTGGGAACGTA 59.105 41.667 0.00 0.00 0.00 3.57
104 105 3.707611 TGCCATAATACTACTGGGAACGT 59.292 43.478 0.00 0.00 0.00 3.99
105 106 4.330944 TGCCATAATACTACTGGGAACG 57.669 45.455 0.00 0.00 0.00 3.95
106 107 6.998673 AGAATTGCCATAATACTACTGGGAAC 59.001 38.462 0.00 0.00 42.17 3.62
107 108 7.149202 AGAATTGCCATAATACTACTGGGAA 57.851 36.000 0.00 0.00 43.28 3.97
108 109 6.763715 AGAATTGCCATAATACTACTGGGA 57.236 37.500 0.00 0.00 0.00 4.37
109 110 7.390718 GGTTAGAATTGCCATAATACTACTGGG 59.609 40.741 0.00 0.00 0.00 4.45
110 111 8.157476 AGGTTAGAATTGCCATAATACTACTGG 58.843 37.037 0.00 0.00 0.00 4.00
111 112 9.561069 AAGGTTAGAATTGCCATAATACTACTG 57.439 33.333 0.00 0.00 0.00 2.74
112 113 9.780186 GAAGGTTAGAATTGCCATAATACTACT 57.220 33.333 0.00 0.00 0.00 2.57
113 114 9.780186 AGAAGGTTAGAATTGCCATAATACTAC 57.220 33.333 0.00 0.00 0.00 2.73
115 116 9.700831 AAAGAAGGTTAGAATTGCCATAATACT 57.299 29.630 0.00 0.00 0.00 2.12
116 117 9.952188 GAAAGAAGGTTAGAATTGCCATAATAC 57.048 33.333 0.00 0.00 0.00 1.89
117 118 9.693739 TGAAAGAAGGTTAGAATTGCCATAATA 57.306 29.630 0.00 0.00 0.00 0.98
118 119 8.593945 TGAAAGAAGGTTAGAATTGCCATAAT 57.406 30.769 0.00 0.00 0.00 1.28
119 120 8.303876 GTTGAAAGAAGGTTAGAATTGCCATAA 58.696 33.333 0.00 0.00 0.00 1.90
120 121 7.450014 TGTTGAAAGAAGGTTAGAATTGCCATA 59.550 33.333 0.00 0.00 0.00 2.74
121 122 6.267471 TGTTGAAAGAAGGTTAGAATTGCCAT 59.733 34.615 0.00 0.00 0.00 4.40
122 123 5.596361 TGTTGAAAGAAGGTTAGAATTGCCA 59.404 36.000 0.00 0.00 0.00 4.92
123 124 6.084326 TGTTGAAAGAAGGTTAGAATTGCC 57.916 37.500 0.00 0.00 0.00 4.52
124 125 8.419076 TTTTGTTGAAAGAAGGTTAGAATTGC 57.581 30.769 0.00 0.00 0.00 3.56
162 163 2.263945 CGGTGTGAAAACAAAACCACC 58.736 47.619 0.00 0.00 39.13 4.61
163 164 2.949142 ACGGTGTGAAAACAAAACCAC 58.051 42.857 0.00 0.00 0.00 4.16
167 168 6.921857 TCAAAGTTAACGGTGTGAAAACAAAA 59.078 30.769 0.00 0.00 0.00 2.44
171 172 4.497966 GCTCAAAGTTAACGGTGTGAAAAC 59.502 41.667 14.12 0.00 0.00 2.43
194 197 2.790433 TGAAGGAAAATCAAGGACGGG 58.210 47.619 0.00 0.00 0.00 5.28
210 213 0.449388 GGCAGTGGCGAATCTTGAAG 59.551 55.000 0.00 0.00 42.47 3.02
221 224 1.004440 AAGACTTCTCGGCAGTGGC 60.004 57.895 6.62 6.62 40.13 5.01
231 234 1.151668 GCACGTGCATGAAGACTTCT 58.848 50.000 34.52 0.00 41.59 2.85
235 238 2.690778 GGGGCACGTGCATGAAGAC 61.691 63.158 38.60 20.85 44.36 3.01
257 260 0.396060 CCTCTCTAGAGCATTGGCCC 59.604 60.000 15.35 0.00 42.56 5.80
258 261 1.127343 ACCTCTCTAGAGCATTGGCC 58.873 55.000 15.35 0.00 42.56 5.36
263 266 2.962421 GGCAACTACCTCTCTAGAGCAT 59.038 50.000 15.35 5.28 40.75 3.79
268 271 0.386113 GGCGGCAACTACCTCTCTAG 59.614 60.000 3.07 0.00 0.00 2.43
270 273 0.978146 ATGGCGGCAACTACCTCTCT 60.978 55.000 18.31 0.00 0.00 3.10
281 284 1.766494 AGAATGATTCAATGGCGGCA 58.234 45.000 16.34 16.34 0.00 5.69
284 287 5.391310 GGCACTATAGAATGATTCAATGGCG 60.391 44.000 6.78 0.00 0.00 5.69
299 310 4.557695 CGAGAGCTGGTTTAGGCACTATAG 60.558 50.000 0.00 0.00 42.38 1.31
301 312 2.101582 CGAGAGCTGGTTTAGGCACTAT 59.898 50.000 0.00 0.00 42.38 2.12
332 343 0.679505 TAGGGTGTCTCGCCATATGC 59.320 55.000 0.00 0.00 35.42 3.14
377 388 0.267356 CTCCTGGATTCTCCTCCCCT 59.733 60.000 0.00 0.00 37.46 4.79
378 389 0.766288 CCTCCTGGATTCTCCTCCCC 60.766 65.000 0.00 0.00 37.46 4.81
379 390 0.030603 ACCTCCTGGATTCTCCTCCC 60.031 60.000 0.00 0.00 37.46 4.30
380 391 1.127343 CACCTCCTGGATTCTCCTCC 58.873 60.000 0.00 0.00 37.46 4.30
381 392 1.127343 CCACCTCCTGGATTCTCCTC 58.873 60.000 0.00 0.00 43.95 3.71
382 393 0.985490 GCCACCTCCTGGATTCTCCT 60.985 60.000 0.00 0.00 43.95 3.69
383 394 1.529309 GCCACCTCCTGGATTCTCC 59.471 63.158 0.00 0.00 43.95 3.71
384 395 1.529309 GGCCACCTCCTGGATTCTC 59.471 63.158 0.00 0.00 43.95 2.87
385 396 2.370445 CGGCCACCTCCTGGATTCT 61.370 63.158 2.24 0.00 43.95 2.40
386 397 1.700042 ATCGGCCACCTCCTGGATTC 61.700 60.000 2.24 0.00 43.95 2.52
387 398 1.694169 ATCGGCCACCTCCTGGATT 60.694 57.895 2.24 0.00 43.95 3.01
396 407 1.302033 CATAGCTCCATCGGCCACC 60.302 63.158 2.24 0.00 0.00 4.61
422 445 1.454201 GGGGCTACAGCAAAGTTCTC 58.546 55.000 3.24 0.00 44.36 2.87
433 456 0.755698 CTCGAGCTAAGGGGGCTACA 60.756 60.000 0.00 0.00 40.40 2.74
434 457 1.465200 CCTCGAGCTAAGGGGGCTAC 61.465 65.000 6.99 0.00 40.40 3.58
465 488 3.708563 AACAAGACAACACGAAATGGG 57.291 42.857 0.00 0.00 0.00 4.00
472 495 2.490328 ATGGCAAACAAGACAACACG 57.510 45.000 0.00 0.00 0.00 4.49
520 544 9.838339 ACCTCATGACCTAAAAATGTCTTATAG 57.162 33.333 0.00 0.00 32.67 1.31
529 553 6.492087 TCGGAAAAACCTCATGACCTAAAAAT 59.508 34.615 0.00 0.00 36.31 1.82
538 562 2.683968 CGACTCGGAAAAACCTCATGA 58.316 47.619 0.00 0.00 36.31 3.07
542 566 1.194772 CAAGCGACTCGGAAAAACCTC 59.805 52.381 0.00 0.00 36.31 3.85
551 575 3.770666 TCTTATTTCTCAAGCGACTCGG 58.229 45.455 0.00 0.00 0.00 4.63
552 576 5.722592 GCTTTCTTATTTCTCAAGCGACTCG 60.723 44.000 0.00 0.00 31.19 4.18
568 596 6.295039 AGTCGAAAACGAATTGCTTTCTTA 57.705 33.333 0.00 0.00 31.81 2.10
577 605 1.504359 TGCCGAGTCGAAAACGAATT 58.496 45.000 15.64 0.00 0.00 2.17
604 632 2.360439 TAAACCAAACCGGGCTGGCT 62.360 55.000 20.83 8.81 43.94 4.75
605 633 1.254975 ATAAACCAAACCGGGCTGGC 61.255 55.000 20.83 0.00 43.94 4.85
606 634 0.530288 CATAAACCAAACCGGGCTGG 59.470 55.000 19.65 19.65 46.41 4.85
607 635 0.108851 GCATAAACCAAACCGGGCTG 60.109 55.000 6.32 1.52 40.22 4.85
655 684 9.584008 ACTTATTTCTATGCATTCCATGAGATT 57.416 29.630 3.54 0.00 35.34 2.40
680 709 9.797556 AATGTTTACTTACCACAAGAAAAGAAC 57.202 29.630 0.00 0.00 0.00 3.01
684 713 9.796120 CAAGAATGTTTACTTACCACAAGAAAA 57.204 29.630 0.00 0.00 0.00 2.29
689 719 5.830991 AGGCAAGAATGTTTACTTACCACAA 59.169 36.000 0.00 0.00 33.42 3.33
698 728 5.241728 AGACCTCAAAGGCAAGAATGTTTAC 59.758 40.000 0.00 0.00 39.63 2.01
700 730 4.218312 AGACCTCAAAGGCAAGAATGTTT 58.782 39.130 0.00 0.00 39.63 2.83
710 740 2.934083 GGTGTGAGACCTCAAAGGC 58.066 57.895 0.70 0.00 42.25 4.35
802 832 3.148340 GCCCGGCGGTTTATATAGG 57.852 57.895 26.32 6.95 0.00 2.57
820 850 3.502979 TCCTTTTCCCGGTGTATTTTTCG 59.497 43.478 0.00 0.00 0.00 3.46
879 916 1.291939 TGGTGATGGATGGAGAGGAGA 59.708 52.381 0.00 0.00 0.00 3.71
934 974 4.293648 CACGCAGACGGTGGTGGA 62.294 66.667 0.00 0.00 46.04 4.02
1037 1077 2.191128 AATCACGCAAGAAGGAAGCT 57.809 45.000 0.00 0.00 43.62 3.74
1054 1097 3.323243 CACAAGAAACCGACCGAGTAAT 58.677 45.455 0.00 0.00 0.00 1.89
1139 1191 2.177038 CGACGCTCGTCTTCTGCT 59.823 61.111 18.51 0.00 42.54 4.24
1197 1249 4.516195 GTCTTCTCCTCCGCCGGC 62.516 72.222 19.07 19.07 0.00 6.13
1198 1250 2.564553 CTTGTCTTCTCCTCCGCCGG 62.565 65.000 0.00 0.00 0.00 6.13
1199 1251 1.153745 CTTGTCTTCTCCTCCGCCG 60.154 63.158 0.00 0.00 0.00 6.46
1200 1252 1.448717 GCTTGTCTTCTCCTCCGCC 60.449 63.158 0.00 0.00 0.00 6.13
1201 1253 1.807573 CGCTTGTCTTCTCCTCCGC 60.808 63.158 0.00 0.00 0.00 5.54
1202 1254 0.038159 AACGCTTGTCTTCTCCTCCG 60.038 55.000 0.00 0.00 0.00 4.63
1203 1255 3.254892 CTTAACGCTTGTCTTCTCCTCC 58.745 50.000 0.00 0.00 0.00 4.30
1204 1256 3.254892 CCTTAACGCTTGTCTTCTCCTC 58.745 50.000 0.00 0.00 0.00 3.71
1205 1257 2.613223 GCCTTAACGCTTGTCTTCTCCT 60.613 50.000 0.00 0.00 0.00 3.69
1206 1258 1.732809 GCCTTAACGCTTGTCTTCTCC 59.267 52.381 0.00 0.00 0.00 3.71
1207 1259 1.732809 GGCCTTAACGCTTGTCTTCTC 59.267 52.381 0.00 0.00 0.00 2.87
1208 1260 1.809684 GGCCTTAACGCTTGTCTTCT 58.190 50.000 0.00 0.00 0.00 2.85
1209 1261 0.442699 CGGCCTTAACGCTTGTCTTC 59.557 55.000 0.00 0.00 0.00 2.87
1210 1262 0.250166 ACGGCCTTAACGCTTGTCTT 60.250 50.000 0.00 0.00 34.00 3.01
1211 1263 0.949105 CACGGCCTTAACGCTTGTCT 60.949 55.000 0.00 0.00 34.00 3.41
1212 1264 1.495951 CACGGCCTTAACGCTTGTC 59.504 57.895 0.00 0.00 34.00 3.18
1213 1265 1.964373 CCACGGCCTTAACGCTTGT 60.964 57.895 0.00 0.00 34.00 3.16
1214 1266 1.635663 CTCCACGGCCTTAACGCTTG 61.636 60.000 0.00 0.00 34.00 4.01
1215 1267 1.375523 CTCCACGGCCTTAACGCTT 60.376 57.895 0.00 0.00 34.00 4.68
1216 1268 2.264794 CTCCACGGCCTTAACGCT 59.735 61.111 0.00 0.00 34.00 5.07
1217 1269 2.818274 CCTCCACGGCCTTAACGC 60.818 66.667 0.00 0.00 34.00 4.84
1218 1270 1.153628 CTCCTCCACGGCCTTAACG 60.154 63.158 0.00 0.00 37.36 3.18
1219 1271 1.449778 GCTCCTCCACGGCCTTAAC 60.450 63.158 0.00 0.00 0.00 2.01
1220 1272 2.666098 GGCTCCTCCACGGCCTTAA 61.666 63.158 0.00 0.00 42.31 1.85
1221 1273 3.081409 GGCTCCTCCACGGCCTTA 61.081 66.667 0.00 0.00 42.31 2.69
1224 1276 4.475135 GAAGGCTCCTCCACGGCC 62.475 72.222 0.00 0.00 45.57 6.13
1225 1277 4.475135 GGAAGGCTCCTCCACGGC 62.475 72.222 0.19 0.00 38.88 5.68
1226 1278 3.787001 GGGAAGGCTCCTCCACGG 61.787 72.222 7.51 0.00 42.05 4.94
1227 1279 3.787001 GGGGAAGGCTCCTCCACG 61.787 72.222 7.51 0.00 42.05 4.94
1228 1280 3.787001 CGGGGAAGGCTCCTCCAC 61.787 72.222 7.51 2.49 39.37 4.02
1275 1327 1.375523 CTCCACGGCCTTAACGCTT 60.376 57.895 0.00 0.00 34.00 4.68
1281 1333 3.081409 GGCTCCTCCACGGCCTTA 61.081 66.667 0.00 0.00 42.31 2.69
1485 1540 5.308825 ACTGTAAAATGCTTCAGTGTAGCT 58.691 37.500 20.66 5.09 39.27 3.32
1486 1541 5.613358 ACTGTAAAATGCTTCAGTGTAGC 57.387 39.130 14.33 14.33 39.27 3.58
1487 1542 7.800380 CAGAAACTGTAAAATGCTTCAGTGTAG 59.200 37.037 0.00 0.00 40.36 2.74
1488 1543 7.639039 CAGAAACTGTAAAATGCTTCAGTGTA 58.361 34.615 0.00 0.00 40.36 2.90
1489 1544 6.498304 CAGAAACTGTAAAATGCTTCAGTGT 58.502 36.000 0.00 0.00 40.36 3.55
1562 1623 8.442384 GCAAATTATCAACCGATTCAAATTTGT 58.558 29.630 17.47 0.00 41.66 2.83
1580 2138 5.730568 GCTCCGTGAAATCGAAGCAAATTAT 60.731 40.000 0.00 0.00 0.00 1.28
1603 2161 7.079475 CCACAAAATTCAGGATTCAAATTTGC 58.921 34.615 13.54 0.00 33.95 3.68
1630 2208 4.334118 TCCTGCAGTGCACGCCAT 62.334 61.111 24.00 1.04 33.79 4.40
2038 2631 1.985116 GGCGAGAAGGTCAGGAGGT 60.985 63.158 0.00 0.00 0.00 3.85
2045 2638 2.103340 GAGAGCGGCGAGAAGGTC 59.897 66.667 12.98 0.00 35.33 3.85
2047 2640 4.560856 CGGAGAGCGGCGAGAAGG 62.561 72.222 12.98 0.00 0.00 3.46
2058 2651 4.821589 GTTGAGGCGGCCGGAGAG 62.822 72.222 29.38 0.00 0.00 3.20
2060 2653 3.976701 AATGTTGAGGCGGCCGGAG 62.977 63.158 29.38 0.00 0.00 4.63
2061 2654 3.969250 GAATGTTGAGGCGGCCGGA 62.969 63.158 29.38 0.42 0.00 5.14
2062 2655 3.508840 GAATGTTGAGGCGGCCGG 61.509 66.667 29.38 8.95 0.00 6.13
2065 2658 1.657751 GGAAGGAATGTTGAGGCGGC 61.658 60.000 0.00 0.00 0.00 6.53
2066 2659 1.369091 CGGAAGGAATGTTGAGGCGG 61.369 60.000 0.00 0.00 0.00 6.13
2067 2660 1.982073 GCGGAAGGAATGTTGAGGCG 61.982 60.000 0.00 0.00 0.00 5.52
2068 2661 1.803289 GCGGAAGGAATGTTGAGGC 59.197 57.895 0.00 0.00 0.00 4.70
2069 2662 0.673644 ACGCGGAAGGAATGTTGAGG 60.674 55.000 12.47 0.00 0.00 3.86
2070 2663 1.659098 GTACGCGGAAGGAATGTTGAG 59.341 52.381 12.47 0.00 0.00 3.02
2071 2664 1.717194 GTACGCGGAAGGAATGTTGA 58.283 50.000 12.47 0.00 0.00 3.18
2072 2665 0.368907 CGTACGCGGAAGGAATGTTG 59.631 55.000 12.47 0.00 0.00 3.33
2073 2666 2.745728 CGTACGCGGAAGGAATGTT 58.254 52.632 12.47 0.00 0.00 2.71
2074 2667 4.489249 CGTACGCGGAAGGAATGT 57.511 55.556 12.47 0.00 0.00 2.71
2092 2685 2.709475 GACCGCCATTGACGATGC 59.291 61.111 0.00 0.00 34.25 3.91
2094 2687 1.518572 GTCGACCGCCATTGACGAT 60.519 57.895 3.51 0.00 35.57 3.73
2095 2688 2.126228 GTCGACCGCCATTGACGA 60.126 61.111 3.51 0.00 0.00 4.20
2097 2690 1.024579 ATTGGTCGACCGCCATTGAC 61.025 55.000 28.70 2.88 39.43 3.18
2099 2692 0.744414 AGATTGGTCGACCGCCATTG 60.744 55.000 28.70 0.00 39.43 2.82
2102 2695 1.375396 CAAGATTGGTCGACCGCCA 60.375 57.895 28.70 16.11 39.43 5.69
2112 2705 1.953686 ACCAAACGGTGTCAAGATTGG 59.046 47.619 13.55 13.55 43.27 3.16
2122 2715 3.801594 CCTGAATTGAAAACCAAACGGTG 59.198 43.478 0.00 0.00 38.43 4.94
2124 2717 4.053469 ACCTGAATTGAAAACCAAACGG 57.947 40.909 0.00 0.00 38.43 4.44
2127 2720 5.894393 TCCAGTACCTGAATTGAAAACCAAA 59.106 36.000 0.00 0.00 34.14 3.28
2133 2726 4.753107 GTCGTTCCAGTACCTGAATTGAAA 59.247 41.667 0.00 0.00 32.44 2.69
2186 2779 2.324560 GGATGGACCCACCCCCATT 61.325 63.158 0.00 0.00 42.80 3.16
2270 2863 3.710165 TGATAGACTCCTCCTCGTACTCA 59.290 47.826 0.00 0.00 0.00 3.41
2348 2941 4.351938 TCGTCCTTGTCCACGCCG 62.352 66.667 0.00 0.00 35.93 6.46
2605 3211 1.531423 CAAGCAGAAGCAGGTGATGT 58.469 50.000 0.00 0.00 45.49 3.06
2612 3218 2.033755 AGCGAGCAAGCAGAAGCAG 61.034 57.895 6.21 0.00 45.49 4.24
2613 3219 2.031616 AGCGAGCAAGCAGAAGCA 59.968 55.556 6.21 0.00 45.49 3.91
2614 3220 2.031516 TCAGCGAGCAAGCAGAAGC 61.032 57.895 6.21 0.00 40.15 3.86
2615 3221 0.947660 TGTCAGCGAGCAAGCAGAAG 60.948 55.000 6.21 0.00 40.15 2.85
2616 3222 0.321034 ATGTCAGCGAGCAAGCAGAA 60.321 50.000 6.21 0.00 40.15 3.02
2617 3223 0.532115 TATGTCAGCGAGCAAGCAGA 59.468 50.000 6.21 0.55 40.15 4.26
2800 3415 1.467342 CTGATGATGGCATGGCGTATG 59.533 52.381 14.84 0.00 39.88 2.39
2801 3416 1.072806 ACTGATGATGGCATGGCGTAT 59.927 47.619 14.84 8.15 34.11 3.06
2802 3417 0.469494 ACTGATGATGGCATGGCGTA 59.531 50.000 14.84 3.04 34.11 4.42
2803 3418 0.816825 GACTGATGATGGCATGGCGT 60.817 55.000 14.76 14.76 34.11 5.68
2805 3420 0.533531 TCGACTGATGATGGCATGGC 60.534 55.000 13.29 13.29 34.11 4.40
2806 3421 2.074576 GATCGACTGATGATGGCATGG 58.925 52.381 3.81 0.00 34.09 3.66
2807 3422 3.041508 AGATCGACTGATGATGGCATG 57.958 47.619 3.81 0.00 34.09 4.06
2808 3423 3.400255 CAAGATCGACTGATGATGGCAT 58.600 45.455 0.00 0.00 34.09 4.40
2809 3424 2.830104 CAAGATCGACTGATGATGGCA 58.170 47.619 0.00 0.00 34.09 4.92
2810 3425 1.530293 GCAAGATCGACTGATGATGGC 59.470 52.381 0.00 0.00 34.09 4.40
2812 3427 3.109044 AGGCAAGATCGACTGATGATG 57.891 47.619 0.00 0.00 34.09 3.07
2813 3428 3.133542 TGAAGGCAAGATCGACTGATGAT 59.866 43.478 0.00 0.00 34.09 2.45
2814 3429 2.497273 TGAAGGCAAGATCGACTGATGA 59.503 45.455 0.00 0.00 34.09 2.92
2934 3566 6.166984 ACCCACACTCAATAGATACAGATG 57.833 41.667 0.00 0.00 0.00 2.90
3049 3689 7.338800 AGCCCAAGATAAACTATGAAACATG 57.661 36.000 0.00 0.00 0.00 3.21
3055 3695 8.492415 ACTATGTAGCCCAAGATAAACTATGA 57.508 34.615 0.00 0.00 0.00 2.15
3074 3714 5.458041 AAATGCAAGCACAGAAACTATGT 57.542 34.783 0.00 0.00 0.00 2.29
3076 3716 6.868339 GGTAAAAATGCAAGCACAGAAACTAT 59.132 34.615 0.00 0.00 0.00 2.12
3077 3717 6.040391 AGGTAAAAATGCAAGCACAGAAACTA 59.960 34.615 0.00 0.00 0.00 2.24
3078 3718 5.049828 GGTAAAAATGCAAGCACAGAAACT 58.950 37.500 0.00 0.00 0.00 2.66
3079 3719 5.049828 AGGTAAAAATGCAAGCACAGAAAC 58.950 37.500 0.00 0.00 0.00 2.78
3125 3866 5.480073 ACAGGCACCAAGATTGCTAAATAAA 59.520 36.000 0.00 0.00 40.07 1.40
3127 3868 4.398988 CACAGGCACCAAGATTGCTAAATA 59.601 41.667 0.00 0.00 40.07 1.40
3139 3880 0.033601 AGTGGTTTCACAGGCACCAA 60.034 50.000 0.00 0.00 45.91 3.67
3161 3902 8.462016 TGGATGATATATTAGATGACACGTCAG 58.538 37.037 6.01 0.00 43.61 3.51
3164 3905 8.581253 TCTGGATGATATATTAGATGACACGT 57.419 34.615 0.00 0.00 0.00 4.49
3165 3906 9.460906 CATCTGGATGATATATTAGATGACACG 57.539 37.037 4.72 0.00 42.38 4.49
3179 3920 5.316167 GCCACATAAACCATCTGGATGATA 58.684 41.667 11.66 3.51 41.20 2.15
3180 3921 4.147321 GCCACATAAACCATCTGGATGAT 58.853 43.478 11.66 0.00 41.20 2.45
3181 3922 3.554934 GCCACATAAACCATCTGGATGA 58.445 45.455 11.66 0.00 41.20 2.92
3204 3945 2.049228 CAAGGATCGCGGTAATCGTAC 58.951 52.381 6.13 0.00 41.72 3.67
3212 3959 2.936498 CAAAAGATACAAGGATCGCGGT 59.064 45.455 6.13 0.00 0.00 5.68
3214 3961 3.865745 AGTCAAAAGATACAAGGATCGCG 59.134 43.478 0.00 0.00 0.00 5.87
3219 3966 4.640771 AGGCAGTCAAAAGATACAAGGA 57.359 40.909 0.00 0.00 0.00 3.36
3232 3979 8.567948 GCTTTATATTATTAAGCAAGGCAGTCA 58.432 33.333 18.01 0.00 42.84 3.41
3236 3983 7.659799 TCTCGCTTTATATTATTAAGCAAGGCA 59.340 33.333 21.04 2.05 43.34 4.75
3252 4007 8.106247 TGAAATAGGTTTTTGTCTCGCTTTAT 57.894 30.769 0.00 0.00 0.00 1.40
3288 4043 3.109230 AGACGTCGTGTACAATCGTAC 57.891 47.619 10.46 12.19 46.94 3.67
3296 4155 6.259743 TGAACTTTAAAAGACGTCGTGTAC 57.740 37.500 10.46 0.00 0.00 2.90
3299 4158 7.319615 GGTTATTGAACTTTAAAAGACGTCGTG 59.680 37.037 10.46 0.00 35.74 4.35
3302 4161 8.124199 TGTGGTTATTGAACTTTAAAAGACGTC 58.876 33.333 7.70 7.70 35.74 4.34
3304 4163 9.113876 GATGTGGTTATTGAACTTTAAAAGACG 57.886 33.333 0.00 0.00 35.74 4.18
3325 4184 9.553418 CTCGACTATTATCATAGTTCAGATGTG 57.447 37.037 1.17 0.00 44.94 3.21
3371 4230 0.687920 TCTCATAACCGGGTTGTGCA 59.312 50.000 26.33 15.28 35.22 4.57
3372 4231 1.670811 CATCTCATAACCGGGTTGTGC 59.329 52.381 26.33 0.00 35.22 4.57
3373 4232 2.985896 ACATCTCATAACCGGGTTGTG 58.014 47.619 25.51 25.51 36.28 3.33
3374 4233 3.431766 GCTACATCTCATAACCGGGTTGT 60.432 47.826 22.44 13.27 0.00 3.32
3375 4234 3.131396 GCTACATCTCATAACCGGGTTG 58.869 50.000 22.44 7.62 0.00 3.77
3378 4237 3.393800 CAAGCTACATCTCATAACCGGG 58.606 50.000 6.32 0.00 0.00 5.73
3383 4242 5.491070 ACAAGTGCAAGCTACATCTCATAA 58.509 37.500 0.00 0.00 0.00 1.90
3393 4252 2.300152 AGACAGCTACAAGTGCAAGCTA 59.700 45.455 9.44 0.00 44.58 3.32
3405 4264 8.239998 AAATTCTCAAATTAAGCAGACAGCTAC 58.760 33.333 0.00 0.00 42.92 3.58
3411 4270 7.329471 GTCCCAAAATTCTCAAATTAAGCAGAC 59.671 37.037 0.00 0.00 33.93 3.51
3415 4274 6.463360 TGGTCCCAAAATTCTCAAATTAAGC 58.537 36.000 0.00 0.00 33.93 3.09
3417 4276 8.256356 TCTTGGTCCCAAAATTCTCAAATTAA 57.744 30.769 0.00 0.00 33.93 1.40
3418 4277 7.847711 TCTTGGTCCCAAAATTCTCAAATTA 57.152 32.000 0.00 0.00 33.93 1.40
3419 4278 6.745794 TCTTGGTCCCAAAATTCTCAAATT 57.254 33.333 0.00 0.00 36.64 1.82
3420 4279 6.704310 CATCTTGGTCCCAAAATTCTCAAAT 58.296 36.000 0.00 0.00 35.33 2.32
3430 4289 0.251742 CCAGGCATCTTGGTCCCAAA 60.252 55.000 0.00 0.00 35.33 3.28
3433 4292 0.259938 AATCCAGGCATCTTGGTCCC 59.740 55.000 0.00 0.00 0.00 4.46
3443 4302 1.250328 CACAAGCTTGAATCCAGGCA 58.750 50.000 32.50 0.00 46.50 4.75
3448 4307 0.961019 TGCACCACAAGCTTGAATCC 59.039 50.000 32.50 15.69 0.00 3.01
3449 4308 2.798976 TTGCACCACAAGCTTGAATC 57.201 45.000 32.50 15.61 33.24 2.52
3498 4357 0.185901 AAAGAAGCTGGCAAGGACCA 59.814 50.000 0.00 0.00 38.29 4.02
3506 4365 2.130395 GCTTGTGAAAAAGAAGCTGGC 58.870 47.619 0.00 0.00 33.96 4.85
3507 4366 3.067180 TGAGCTTGTGAAAAAGAAGCTGG 59.933 43.478 13.68 0.00 45.72 4.85
3508 4367 4.297299 TGAGCTTGTGAAAAAGAAGCTG 57.703 40.909 13.68 0.00 45.72 4.24
3590 4449 2.470362 CCTCAAGAGCCATGCGCAG 61.470 63.158 18.32 3.80 41.38 5.18
3591 4450 2.437180 CCTCAAGAGCCATGCGCA 60.437 61.111 14.96 14.96 41.38 6.09
3593 4452 0.463295 ATGACCTCAAGAGCCATGCG 60.463 55.000 0.00 0.00 0.00 4.73
3609 4470 3.141398 GCCATATCGAAGCAAAGGATGA 58.859 45.455 0.00 0.00 0.00 2.92
3617 4478 0.254462 TGTTGGGCCATATCGAAGCA 59.746 50.000 7.26 0.00 0.00 3.91
3644 4505 5.468072 CGCTCATCCATATAAAAGCACTCTT 59.532 40.000 0.00 0.00 0.00 2.85
3651 4512 5.738909 AGATCCCGCTCATCCATATAAAAG 58.261 41.667 0.00 0.00 0.00 2.27
3656 4517 2.825223 TGAGATCCCGCTCATCCATAT 58.175 47.619 0.00 0.00 39.84 1.78
3658 4519 1.347050 CTTGAGATCCCGCTCATCCAT 59.653 52.381 0.00 0.00 43.84 3.41
3660 4521 1.043816 TCTTGAGATCCCGCTCATCC 58.956 55.000 0.00 0.00 43.84 3.51
3664 4525 2.933260 GTCTTTTCTTGAGATCCCGCTC 59.067 50.000 0.00 0.00 35.46 5.03
3667 4528 3.119459 TCGAGTCTTTTCTTGAGATCCCG 60.119 47.826 0.00 0.00 0.00 5.14
3688 4549 4.320567 GGCTAAACCAAGCACTCTTCTTTC 60.321 45.833 0.00 0.00 44.64 2.62
3709 4570 6.311200 CCATTACAAGCACTCTTAAAAATGGC 59.689 38.462 0.00 0.00 37.72 4.40
3713 4574 5.303078 TGCCCATTACAAGCACTCTTAAAAA 59.697 36.000 0.00 0.00 0.00 1.94
3717 4578 3.712016 TGCCCATTACAAGCACTCTTA 57.288 42.857 0.00 0.00 0.00 2.10
3729 4590 6.982160 ATAATTCTGAAGCATTGCCCATTA 57.018 33.333 4.70 1.24 0.00 1.90
3732 4593 6.788598 TTAATAATTCTGAAGCATTGCCCA 57.211 33.333 4.70 3.14 0.00 5.36
3743 4604 7.442364 CGCCCTTCTTCAGATTAATAATTCTGA 59.558 37.037 2.96 2.96 37.44 3.27
3752 4613 2.888594 CGTCGCCCTTCTTCAGATTAA 58.111 47.619 0.00 0.00 0.00 1.40
3753 4614 1.470979 GCGTCGCCCTTCTTCAGATTA 60.471 52.381 5.75 0.00 0.00 1.75
3762 4623 0.947180 TAGTGTTTGCGTCGCCCTTC 60.947 55.000 15.88 3.44 0.00 3.46
3763 4624 0.533308 TTAGTGTTTGCGTCGCCCTT 60.533 50.000 15.88 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.