Multiple sequence alignment - TraesCS4A01G320600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G320600 chr4A 100.000 2291 0 0 1 2291 608989462 608991752 0.000000e+00 4231.0
1 TraesCS4A01G320600 chr4A 85.714 175 23 2 1006 1179 85146136 85145963 1.400000e-42 183.0
2 TraesCS4A01G320600 chr4A 94.118 85 5 0 1567 1651 539750834 539750750 1.850000e-26 130.0
3 TraesCS4A01G320600 chr5B 91.693 963 44 14 629 1567 705797316 705796366 0.000000e+00 1303.0
4 TraesCS4A01G320600 chr5B 83.796 648 57 15 1 627 705798098 705797478 2.550000e-159 571.0
5 TraesCS4A01G320600 chr5B 88.889 126 9 4 2116 2237 705707923 705707799 1.420000e-32 150.0
6 TraesCS4A01G320600 chr5B 86.441 118 13 2 182 299 356177071 356177185 2.390000e-25 126.0
7 TraesCS4A01G320600 chr5B 91.304 92 5 2 1931 2021 705795373 705795284 3.090000e-24 122.0
8 TraesCS4A01G320600 chr5B 97.727 44 1 0 1826 1869 696337339 696337382 2.440000e-10 76.8
9 TraesCS4A01G320600 chr5D 80.561 1106 102 67 504 1568 563600893 563599860 0.000000e+00 747.0
10 TraesCS4A01G320600 chr5D 92.593 162 12 0 347 508 563601197 563601036 1.370000e-57 233.0
11 TraesCS4A01G320600 chr5D 83.077 195 15 8 1 183 563601386 563601198 6.550000e-36 161.0
12 TraesCS4A01G320600 chr5D 93.103 87 6 0 1565 1651 335103476 335103390 6.640000e-26 128.0
13 TraesCS4A01G320600 chr5D 79.255 188 27 7 2110 2287 563589330 563589145 1.110000e-23 121.0
14 TraesCS4A01G320600 chr5D 85.849 106 15 0 182 287 310189279 310189384 1.860000e-21 113.0
15 TraesCS4A01G320600 chr4D 85.795 176 23 2 1006 1180 379362766 379362940 3.890000e-43 185.0
16 TraesCS4A01G320600 chr4D 94.118 85 5 0 1567 1651 100820506 100820422 1.850000e-26 130.0
17 TraesCS4A01G320600 chr4B 85.795 176 23 2 1006 1180 466640183 466640357 3.890000e-43 185.0
18 TraesCS4A01G320600 chr3A 93.750 96 4 2 1565 1658 655080187 655080092 2.370000e-30 143.0
19 TraesCS4A01G320600 chr3A 93.103 87 6 0 1565 1651 588948274 588948360 6.640000e-26 128.0
20 TraesCS4A01G320600 chr7D 94.186 86 5 0 1566 1651 600225131 600225046 5.140000e-27 132.0
21 TraesCS4A01G320600 chr7D 100.000 37 0 0 1834 1870 191580695 191580659 4.080000e-08 69.4
22 TraesCS4A01G320600 chr7D 97.297 37 1 0 1829 1865 621813542 621813506 1.900000e-06 63.9
23 TraesCS4A01G320600 chr5A 94.118 85 5 0 1567 1651 347461275 347461359 1.850000e-26 130.0
24 TraesCS4A01G320600 chr7A 91.398 93 8 0 1559 1651 670376550 670376642 6.640000e-26 128.0
25 TraesCS4A01G320600 chr7A 93.617 47 3 0 1824 1870 581848391 581848345 1.140000e-08 71.3
26 TraesCS4A01G320600 chr7A 97.297 37 1 0 1829 1865 717373028 717372992 1.900000e-06 63.9
27 TraesCS4A01G320600 chr2B 92.222 90 7 0 1567 1656 131847471 131847382 6.640000e-26 128.0
28 TraesCS4A01G320600 chr2B 89.362 47 5 0 1822 1868 31300907 31300861 2.460000e-05 60.2
29 TraesCS4A01G320600 chr2A 85.149 101 14 1 179 279 778787441 778787342 4.030000e-18 102.0
30 TraesCS4A01G320600 chr2A 97.368 38 1 0 1833 1870 205704939 205704902 5.280000e-07 65.8
31 TraesCS4A01G320600 chr1B 85.417 96 11 1 181 273 675893182 675893277 1.870000e-16 97.1
32 TraesCS4A01G320600 chr1B 96.875 32 1 0 230 261 514603789 514603820 1.000000e-03 54.7
33 TraesCS4A01G320600 chr6A 93.333 45 3 0 1823 1867 441519977 441520021 1.470000e-07 67.6
34 TraesCS4A01G320600 chr7B 91.304 46 4 0 1820 1865 717892911 717892956 1.900000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G320600 chr4A 608989462 608991752 2290 False 4231.000000 4231 100.000000 1 2291 1 chr4A.!!$F1 2290
1 TraesCS4A01G320600 chr5B 705795284 705798098 2814 True 665.333333 1303 88.931000 1 2021 3 chr5B.!!$R2 2020
2 TraesCS4A01G320600 chr5D 563599860 563601386 1526 True 380.333333 747 85.410333 1 1568 3 chr5D.!!$R3 1567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 371 0.831307 CCTAGCCACACCCCTAGTTC 59.169 60.0 0.0 0.0 31.29 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2172 3365 0.034337 TTGTGTGAAGCCCCGACTAC 59.966 55.0 0.0 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 74 1.135689 CCTTGTTTAGCCGATGCACAC 60.136 52.381 0.00 0.00 41.13 3.82
118 132 5.447573 GTCCTCGTACGTACATTATTCCTC 58.552 45.833 24.50 3.17 0.00 3.71
119 133 5.008019 GTCCTCGTACGTACATTATTCCTCA 59.992 44.000 24.50 0.00 0.00 3.86
121 135 5.237996 CCTCGTACGTACATTATTCCTCAGA 59.762 44.000 24.50 8.59 0.00 3.27
128 142 7.837863 ACGTACATTATTCCTCAGAAGAAAGA 58.162 34.615 0.00 0.00 36.81 2.52
129 143 7.760340 ACGTACATTATTCCTCAGAAGAAAGAC 59.240 37.037 0.00 0.00 36.81 3.01
136 150 9.618890 TTATTCCTCAGAAGAAAGACATTATGG 57.381 33.333 0.00 0.00 34.86 2.74
143 164 8.260818 TCAGAAGAAAGACATTATGGAGGTTAG 58.739 37.037 0.00 0.00 0.00 2.34
170 191 5.106712 GGCAGATTAAGTTGTCGTTTCATGA 60.107 40.000 0.00 0.00 0.00 3.07
175 196 4.992381 AAGTTGTCGTTTCATGACTAGC 57.008 40.909 0.00 0.00 35.24 3.42
184 205 6.531948 GTCGTTTCATGACTAGCTTATCAGTT 59.468 38.462 0.00 0.00 31.58 3.16
190 211 7.555965 TCATGACTAGCTTATCAGTTTTGCTA 58.444 34.615 0.00 0.00 35.47 3.49
195 216 7.616313 ACTAGCTTATCAGTTTTGCTAAGTCT 58.384 34.615 0.00 2.36 36.09 3.24
200 221 4.067972 TCAGTTTTGCTAAGTCTCGGTT 57.932 40.909 0.00 0.00 0.00 4.44
203 224 3.808174 AGTTTTGCTAAGTCTCGGTTGAC 59.192 43.478 0.00 0.00 37.23 3.18
206 227 2.235891 TGCTAAGTCTCGGTTGACTGA 58.764 47.619 7.25 0.00 45.49 3.41
219 240 5.047306 TCGGTTGACTGAGACTTCATTATGT 60.047 40.000 0.00 0.00 31.68 2.29
220 241 5.639506 CGGTTGACTGAGACTTCATTATGTT 59.360 40.000 0.00 0.00 31.68 2.71
222 243 7.522374 GGTTGACTGAGACTTCATTATGTTTC 58.478 38.462 0.00 0.00 31.68 2.78
223 244 6.951256 TGACTGAGACTTCATTATGTTTCG 57.049 37.500 0.00 0.00 31.68 3.46
226 247 5.869888 ACTGAGACTTCATTATGTTTCGGTC 59.130 40.000 0.00 0.00 33.46 4.79
228 249 4.817517 AGACTTCATTATGTTTCGGTCGT 58.182 39.130 0.00 0.00 0.00 4.34
239 260 4.751060 TGTTTCGGTCGTTGCTATATTCT 58.249 39.130 0.00 0.00 0.00 2.40
250 271 8.313931 GTCGTTGCTATATTCTTTTGATTTTGC 58.686 33.333 0.00 0.00 0.00 3.68
266 287 5.589855 TGATTTTGCATGGAGATTCGTACAT 59.410 36.000 0.00 0.00 0.00 2.29
268 289 7.445096 TGATTTTGCATGGAGATTCGTACATAT 59.555 33.333 0.00 0.00 0.00 1.78
326 352 5.692204 TCTTCAAGTCAAAGTCGATTGAGAC 59.308 40.000 1.71 3.70 39.84 3.36
345 371 0.831307 CCTAGCCACACCCCTAGTTC 59.169 60.000 0.00 0.00 31.29 3.01
356 382 1.639635 CCCTAGTTCATGCCCTGGCT 61.640 60.000 9.97 0.00 42.51 4.75
521 697 8.651389 TCTATATATTACTAGCAATGGGCCATC 58.349 37.037 21.48 8.44 46.50 3.51
627 807 5.147767 AGATCCCCTATTATTGGCAAAACC 58.852 41.667 3.01 0.00 39.84 3.27
679 1019 9.849166 CCTTTAACTTTTGTTAGTCAACTGAAA 57.151 29.630 0.00 0.00 44.60 2.69
732 1078 3.411454 TGGGATGGGAATAAAATGCCA 57.589 42.857 0.00 0.00 45.47 4.92
828 1185 7.995463 TTAACATTGTGACATCGATCGATTA 57.005 32.000 27.45 14.17 31.62 1.75
840 1197 3.489416 TCGATCGATTACCTTTTGCATCG 59.511 43.478 15.15 0.00 39.92 3.84
938 1328 3.288242 GTTTGCAATGACACACACGTAG 58.712 45.455 0.00 0.00 0.00 3.51
966 1356 4.486090 TCGCAGAGACAGATTAAGAACAC 58.514 43.478 0.00 0.00 0.00 3.32
1062 1467 2.949106 CTGGACACGTACGACCGT 59.051 61.111 24.41 15.45 42.87 4.83
1294 1699 1.455383 GCGGCCCCAGACATAAATGG 61.455 60.000 0.00 0.00 36.27 3.16
1295 1700 0.106719 CGGCCCCAGACATAAATGGT 60.107 55.000 0.00 0.00 34.58 3.55
1296 1701 1.142060 CGGCCCCAGACATAAATGGTA 59.858 52.381 0.00 0.00 34.58 3.25
1297 1702 2.810400 CGGCCCCAGACATAAATGGTAG 60.810 54.545 0.00 0.00 34.58 3.18
1298 1703 2.174854 GGCCCCAGACATAAATGGTAGT 59.825 50.000 0.00 0.00 34.58 2.73
1299 1704 3.372675 GGCCCCAGACATAAATGGTAGTT 60.373 47.826 0.00 0.00 34.58 2.24
1300 1705 3.632145 GCCCCAGACATAAATGGTAGTTG 59.368 47.826 0.00 0.00 34.58 3.16
1349 1761 2.997315 CTGGTCGGCACAGGAGGA 60.997 66.667 0.00 0.00 32.38 3.71
1350 1762 3.302347 CTGGTCGGCACAGGAGGAC 62.302 68.421 0.00 0.00 32.38 3.85
1351 1763 3.311110 GGTCGGCACAGGAGGACA 61.311 66.667 0.00 0.00 0.00 4.02
1354 1766 2.262915 CGGCACAGGAGGACACTC 59.737 66.667 0.00 0.00 43.20 3.51
1361 1778 1.898472 ACAGGAGGACACTCACATGAG 59.102 52.381 7.36 7.36 45.81 2.90
1372 1789 3.643320 CACTCACATGAGCCCTATCCTAA 59.357 47.826 8.84 0.00 45.79 2.69
1373 1790 4.285517 CACTCACATGAGCCCTATCCTAAT 59.714 45.833 8.84 0.00 45.79 1.73
1374 1791 4.530161 ACTCACATGAGCCCTATCCTAATC 59.470 45.833 8.84 0.00 45.79 1.75
1375 1792 4.756564 TCACATGAGCCCTATCCTAATCT 58.243 43.478 0.00 0.00 0.00 2.40
1376 1793 5.903923 TCACATGAGCCCTATCCTAATCTA 58.096 41.667 0.00 0.00 0.00 1.98
1377 1794 5.717178 TCACATGAGCCCTATCCTAATCTAC 59.283 44.000 0.00 0.00 0.00 2.59
1402 1826 9.428097 ACATCTGCATTACATACATACATGTAG 57.572 33.333 11.91 6.29 45.46 2.74
1554 1989 2.965147 ACACTGTGCTGGCCTTTTTATT 59.035 40.909 7.90 0.00 0.00 1.40
1568 2003 6.346279 GGCCTTTTTATTTGTTTGCGAACTAC 60.346 38.462 17.65 0.00 36.70 2.73
1569 2004 6.419710 GCCTTTTTATTTGTTTGCGAACTACT 59.580 34.615 17.65 7.30 36.70 2.57
1570 2005 7.358105 GCCTTTTTATTTGTTTGCGAACTACTC 60.358 37.037 17.65 0.00 36.70 2.59
1571 2006 7.114388 CCTTTTTATTTGTTTGCGAACTACTCC 59.886 37.037 17.65 0.00 36.70 3.85
1572 2007 5.616488 TTATTTGTTTGCGAACTACTCCC 57.384 39.130 17.65 0.00 36.70 4.30
1573 2008 2.922740 TTGTTTGCGAACTACTCCCT 57.077 45.000 17.65 0.00 36.70 4.20
1574 2009 2.450609 TGTTTGCGAACTACTCCCTC 57.549 50.000 17.65 0.00 36.70 4.30
1575 2010 1.968493 TGTTTGCGAACTACTCCCTCT 59.032 47.619 17.65 0.00 36.70 3.69
1576 2011 2.288825 TGTTTGCGAACTACTCCCTCTG 60.289 50.000 17.65 0.00 36.70 3.35
1577 2012 1.629043 TTGCGAACTACTCCCTCTGT 58.371 50.000 0.00 0.00 0.00 3.41
1578 2013 2.502142 TGCGAACTACTCCCTCTGTA 57.498 50.000 0.00 0.00 0.00 2.74
1579 2014 2.799017 TGCGAACTACTCCCTCTGTAA 58.201 47.619 0.00 0.00 0.00 2.41
1580 2015 3.159472 TGCGAACTACTCCCTCTGTAAA 58.841 45.455 0.00 0.00 0.00 2.01
1581 2016 3.057033 TGCGAACTACTCCCTCTGTAAAC 60.057 47.826 0.00 0.00 0.00 2.01
1582 2017 3.193056 GCGAACTACTCCCTCTGTAAACT 59.807 47.826 0.00 0.00 0.00 2.66
1583 2018 4.397417 GCGAACTACTCCCTCTGTAAACTA 59.603 45.833 0.00 0.00 0.00 2.24
1584 2019 5.105997 GCGAACTACTCCCTCTGTAAACTAA 60.106 44.000 0.00 0.00 0.00 2.24
1585 2020 6.405619 GCGAACTACTCCCTCTGTAAACTAAT 60.406 42.308 0.00 0.00 0.00 1.73
1586 2021 7.201767 GCGAACTACTCCCTCTGTAAACTAATA 60.202 40.741 0.00 0.00 0.00 0.98
1587 2022 8.848182 CGAACTACTCCCTCTGTAAACTAATAT 58.152 37.037 0.00 0.00 0.00 1.28
1665 2100 2.996621 GGAAGTAACAGTGTGCTAGCTG 59.003 50.000 17.23 8.25 38.58 4.24
1668 2103 2.368875 AGTAACAGTGTGCTAGCTGGTT 59.631 45.455 17.23 14.07 37.07 3.67
1670 2105 2.457366 ACAGTGTGCTAGCTGGTTAC 57.543 50.000 17.23 5.70 37.07 2.50
1671 2106 1.002087 ACAGTGTGCTAGCTGGTTACC 59.998 52.381 17.23 0.00 37.07 2.85
1672 2107 1.276421 CAGTGTGCTAGCTGGTTACCT 59.724 52.381 17.23 2.27 0.00 3.08
1676 2111 2.758979 TGTGCTAGCTGGTTACCTACTC 59.241 50.000 17.23 0.00 0.00 2.59
1683 2118 2.299297 GCTGGTTACCTACTCTGTGTGT 59.701 50.000 2.07 0.00 0.00 3.72
1684 2119 3.508793 GCTGGTTACCTACTCTGTGTGTA 59.491 47.826 2.07 0.00 0.00 2.90
1685 2120 4.159879 GCTGGTTACCTACTCTGTGTGTAT 59.840 45.833 2.07 0.00 0.00 2.29
1687 2122 5.081728 TGGTTACCTACTCTGTGTGTATGT 58.918 41.667 2.07 0.00 0.00 2.29
1689 2124 5.047519 GGTTACCTACTCTGTGTGTATGTGT 60.048 44.000 0.00 0.00 0.00 3.72
1690 2125 4.521130 ACCTACTCTGTGTGTATGTGTG 57.479 45.455 0.00 0.00 0.00 3.82
1691 2126 3.254060 CCTACTCTGTGTGTATGTGTGC 58.746 50.000 0.00 0.00 0.00 4.57
1699 2134 1.167851 GTGTATGTGTGCTGCCATGT 58.832 50.000 0.00 0.00 0.00 3.21
1701 2136 2.095853 GTGTATGTGTGCTGCCATGTAC 59.904 50.000 0.00 3.74 0.00 2.90
1702 2137 2.289945 TGTATGTGTGCTGCCATGTACA 60.290 45.455 0.00 0.00 0.00 2.90
1706 2141 2.289945 TGTGTGCTGCCATGTACATACA 60.290 45.455 8.32 9.13 40.98 2.29
1709 2144 4.024893 GTGTGCTGCCATGTACATACATAC 60.025 45.833 8.32 11.70 44.57 2.39
1710 2145 4.126437 GTGCTGCCATGTACATACATACA 58.874 43.478 8.32 8.51 44.57 2.29
1711 2146 4.756642 GTGCTGCCATGTACATACATACAT 59.243 41.667 8.32 0.00 44.57 2.29
1721 2156 8.625786 ATGTACATACATACATGGTACGTCTA 57.374 34.615 6.56 0.00 44.54 2.59
1722 2157 7.864686 TGTACATACATACATGGTACGTCTAC 58.135 38.462 0.00 0.00 29.97 2.59
1723 2158 5.993891 ACATACATACATGGTACGTCTACG 58.006 41.667 0.00 0.04 46.33 3.51
1739 2901 4.084745 CGTCTACGTTTTGTACATGTGCTT 60.085 41.667 15.25 0.00 34.11 3.91
1775 2937 4.730949 AATCCATGCATGTTCTTCCTTG 57.269 40.909 24.58 6.69 0.00 3.61
1806 2968 2.995466 AATCCGTGTGCAAGTCATTG 57.005 45.000 0.00 0.00 39.57 2.82
1808 2970 0.179032 TCCGTGTGCAAGTCATTGGT 60.179 50.000 0.00 0.00 36.88 3.67
1809 2971 1.070914 TCCGTGTGCAAGTCATTGGTA 59.929 47.619 0.00 0.00 36.88 3.25
1810 2972 1.196808 CCGTGTGCAAGTCATTGGTAC 59.803 52.381 0.00 0.00 36.88 3.34
1811 2973 1.870402 CGTGTGCAAGTCATTGGTACA 59.130 47.619 0.00 0.00 36.88 2.90
1812 2974 2.349438 CGTGTGCAAGTCATTGGTACAC 60.349 50.000 0.00 0.00 39.29 2.90
1813 2975 1.870402 TGTGCAAGTCATTGGTACACG 59.130 47.619 0.00 0.00 39.29 4.49
1814 2976 0.871722 TGCAAGTCATTGGTACACGC 59.128 50.000 0.00 0.00 39.29 5.34
1815 2977 1.156736 GCAAGTCATTGGTACACGCT 58.843 50.000 0.00 0.00 39.29 5.07
1816 2978 2.289133 TGCAAGTCATTGGTACACGCTA 60.289 45.455 0.00 0.00 39.29 4.26
1817 2979 2.739913 GCAAGTCATTGGTACACGCTAA 59.260 45.455 0.00 0.00 39.29 3.09
1818 2980 3.374058 GCAAGTCATTGGTACACGCTAAT 59.626 43.478 0.00 0.00 39.29 1.73
1819 2981 4.142687 GCAAGTCATTGGTACACGCTAATT 60.143 41.667 0.00 0.00 39.29 1.40
1820 2982 5.064198 GCAAGTCATTGGTACACGCTAATTA 59.936 40.000 0.00 0.00 39.29 1.40
1821 2983 6.402766 GCAAGTCATTGGTACACGCTAATTAA 60.403 38.462 0.00 0.00 39.29 1.40
1822 2984 6.903883 AGTCATTGGTACACGCTAATTAAG 57.096 37.500 0.00 0.00 39.29 1.85
1823 2985 6.403878 AGTCATTGGTACACGCTAATTAAGT 58.596 36.000 0.00 0.00 39.29 2.24
1824 2986 6.312918 AGTCATTGGTACACGCTAATTAAGTG 59.687 38.462 15.28 15.28 39.29 3.16
1825 2987 4.932268 TTGGTACACGCTAATTAAGTGC 57.068 40.909 16.28 3.56 39.29 4.40
1826 2988 4.196626 TGGTACACGCTAATTAAGTGCT 57.803 40.909 16.28 9.29 39.48 4.40
1827 2989 4.571919 TGGTACACGCTAATTAAGTGCTT 58.428 39.130 16.28 5.41 39.48 3.91
1828 2990 4.628333 TGGTACACGCTAATTAAGTGCTTC 59.372 41.667 16.28 9.50 39.48 3.86
1829 2991 4.868734 GGTACACGCTAATTAAGTGCTTCT 59.131 41.667 16.28 4.63 39.48 2.85
1830 2992 5.350640 GGTACACGCTAATTAAGTGCTTCTT 59.649 40.000 16.28 0.00 39.48 2.52
1831 2993 5.532025 ACACGCTAATTAAGTGCTTCTTC 57.468 39.130 16.28 0.00 39.48 2.87
1832 2994 5.238583 ACACGCTAATTAAGTGCTTCTTCT 58.761 37.500 16.28 0.00 39.48 2.85
1833 2995 6.395629 ACACGCTAATTAAGTGCTTCTTCTA 58.604 36.000 16.28 0.00 39.48 2.10
1834 2996 7.042335 ACACGCTAATTAAGTGCTTCTTCTAT 58.958 34.615 16.28 0.00 39.48 1.98
1835 2997 8.195436 ACACGCTAATTAAGTGCTTCTTCTATA 58.805 33.333 16.28 0.00 39.48 1.31
1836 2998 9.031360 CACGCTAATTAAGTGCTTCTTCTATAA 57.969 33.333 7.53 0.00 39.48 0.98
1837 2999 9.595823 ACGCTAATTAAGTGCTTCTTCTATAAA 57.404 29.630 0.00 0.00 39.48 1.40
1838 3000 9.851043 CGCTAATTAAGTGCTTCTTCTATAAAC 57.149 33.333 0.00 0.00 37.56 2.01
1873 3035 9.535878 GATGTTTTAGATCACTAAAGTAGAGGG 57.464 37.037 0.00 0.00 45.40 4.30
1874 3036 8.660295 TGTTTTAGATCACTAAAGTAGAGGGA 57.340 34.615 0.00 0.00 45.40 4.20
1886 3048 9.145442 ACTAAAGTAGAGGGAGTACCATATTTC 57.855 37.037 0.00 0.00 43.89 2.17
1929 3122 7.929941 ATTTCTTTACTCTTTTGGCTAGGAG 57.070 36.000 0.00 0.00 0.00 3.69
1933 3126 7.384477 TCTTTACTCTTTTGGCTAGGAGTTAC 58.616 38.462 9.44 0.00 39.39 2.50
1947 3140 6.258947 GCTAGGAGTTACCACATTCATTCTTC 59.741 42.308 0.00 0.00 42.04 2.87
1953 3146 4.978083 ACCACATTCATTCTTCATGAGC 57.022 40.909 0.00 0.00 43.15 4.26
1985 3178 9.274206 GTCTTTCCTTATAATTATGACCTCCAC 57.726 37.037 8.28 0.00 0.00 4.02
1994 3187 6.834168 AATTATGACCTCCACGATTTTTGT 57.166 33.333 0.00 0.00 0.00 2.83
1995 3188 7.931578 AATTATGACCTCCACGATTTTTGTA 57.068 32.000 0.00 0.00 0.00 2.41
1996 3189 6.730960 TTATGACCTCCACGATTTTTGTAC 57.269 37.500 0.00 0.00 0.00 2.90
2012 3205 7.517614 TTTTTGTACAGTGAAAGCCATCATA 57.482 32.000 0.00 0.00 0.00 2.15
2021 3214 4.009675 TGAAAGCCATCATAGCGACTTTT 58.990 39.130 0.00 0.00 34.64 2.27
2022 3215 4.142622 TGAAAGCCATCATAGCGACTTTTG 60.143 41.667 0.00 0.00 34.64 2.44
2023 3216 2.991250 AGCCATCATAGCGACTTTTGT 58.009 42.857 0.00 0.00 34.64 2.83
2024 3217 2.939103 AGCCATCATAGCGACTTTTGTC 59.061 45.455 0.00 0.00 45.55 3.18
2025 3218 2.939103 GCCATCATAGCGACTTTTGTCT 59.061 45.455 0.00 0.00 46.76 3.41
2026 3219 3.375299 GCCATCATAGCGACTTTTGTCTT 59.625 43.478 0.00 0.00 46.76 3.01
2027 3220 4.142600 GCCATCATAGCGACTTTTGTCTTT 60.143 41.667 0.00 0.00 46.76 2.52
2028 3221 5.619981 GCCATCATAGCGACTTTTGTCTTTT 60.620 40.000 0.00 0.00 46.76 2.27
2029 3222 6.381801 CCATCATAGCGACTTTTGTCTTTTT 58.618 36.000 0.00 0.00 46.76 1.94
2054 3247 1.301423 TTTTGGTTTCTCGGTGGTCG 58.699 50.000 0.00 0.00 40.90 4.79
2055 3248 0.464870 TTTGGTTTCTCGGTGGTCGA 59.535 50.000 0.00 0.00 46.77 4.20
2062 3255 2.261361 TCGGTGGTCGAGCATGTG 59.739 61.111 21.66 13.28 43.74 3.21
2063 3256 2.048222 CGGTGGTCGAGCATGTGT 60.048 61.111 21.66 0.00 42.43 3.72
2064 3257 2.382746 CGGTGGTCGAGCATGTGTG 61.383 63.158 21.66 5.44 42.43 3.82
2065 3258 1.301716 GGTGGTCGAGCATGTGTGT 60.302 57.895 21.66 0.00 0.00 3.72
2066 3259 0.037697 GGTGGTCGAGCATGTGTGTA 60.038 55.000 21.66 0.00 0.00 2.90
2067 3260 1.350193 GTGGTCGAGCATGTGTGTAG 58.650 55.000 21.66 0.00 0.00 2.74
2068 3261 1.067846 GTGGTCGAGCATGTGTGTAGA 60.068 52.381 21.66 0.00 0.00 2.59
2069 3262 1.616374 TGGTCGAGCATGTGTGTAGAA 59.384 47.619 14.39 0.00 0.00 2.10
2070 3263 2.036604 TGGTCGAGCATGTGTGTAGAAA 59.963 45.455 14.39 0.00 0.00 2.52
2071 3264 3.064207 GGTCGAGCATGTGTGTAGAAAA 58.936 45.455 10.30 0.00 0.00 2.29
2072 3265 3.123621 GGTCGAGCATGTGTGTAGAAAAG 59.876 47.826 10.30 0.00 0.00 2.27
2073 3266 3.123621 GTCGAGCATGTGTGTAGAAAAGG 59.876 47.826 0.00 0.00 0.00 3.11
2074 3267 2.159653 CGAGCATGTGTGTAGAAAAGGC 60.160 50.000 0.00 0.00 0.00 4.35
2075 3268 2.162408 GAGCATGTGTGTAGAAAAGGCC 59.838 50.000 0.00 0.00 0.00 5.19
2076 3269 2.162681 GCATGTGTGTAGAAAAGGCCT 58.837 47.619 0.00 0.00 0.00 5.19
2077 3270 2.095059 GCATGTGTGTAGAAAAGGCCTG 60.095 50.000 5.69 0.00 0.00 4.85
2078 3271 1.604604 TGTGTGTAGAAAAGGCCTGC 58.395 50.000 5.69 0.00 0.00 4.85
2079 3272 1.142870 TGTGTGTAGAAAAGGCCTGCT 59.857 47.619 5.69 7.20 0.00 4.24
2080 3273 1.537202 GTGTGTAGAAAAGGCCTGCTG 59.463 52.381 5.69 0.00 0.00 4.41
2081 3274 1.168714 GTGTAGAAAAGGCCTGCTGG 58.831 55.000 5.69 5.03 0.00 4.85
2082 3275 1.064003 TGTAGAAAAGGCCTGCTGGA 58.936 50.000 14.77 0.00 34.57 3.86
2083 3276 1.635487 TGTAGAAAAGGCCTGCTGGAT 59.365 47.619 14.77 0.00 34.57 3.41
2084 3277 2.293170 GTAGAAAAGGCCTGCTGGATC 58.707 52.381 14.77 4.59 34.57 3.36
2085 3278 0.700564 AGAAAAGGCCTGCTGGATCA 59.299 50.000 14.77 0.00 34.57 2.92
2086 3279 1.287146 AGAAAAGGCCTGCTGGATCAT 59.713 47.619 14.77 0.00 34.57 2.45
2087 3280 2.105766 GAAAAGGCCTGCTGGATCATT 58.894 47.619 14.77 2.47 34.57 2.57
2088 3281 1.772836 AAAGGCCTGCTGGATCATTC 58.227 50.000 14.77 0.00 34.57 2.67
2089 3282 0.465097 AAGGCCTGCTGGATCATTCG 60.465 55.000 14.77 0.00 34.57 3.34
2090 3283 1.895707 GGCCTGCTGGATCATTCGG 60.896 63.158 14.77 0.00 34.57 4.30
2091 3284 2.550101 GCCTGCTGGATCATTCGGC 61.550 63.158 14.77 0.00 34.57 5.54
2092 3285 1.153107 CCTGCTGGATCATTCGGCA 60.153 57.895 2.92 0.00 34.57 5.69
2093 3286 0.749091 CCTGCTGGATCATTCGGCAA 60.749 55.000 0.00 0.00 33.22 4.52
2094 3287 0.379669 CTGCTGGATCATTCGGCAAC 59.620 55.000 0.00 0.00 33.22 4.17
2095 3288 0.322366 TGCTGGATCATTCGGCAACA 60.322 50.000 0.00 0.00 31.50 3.33
2096 3289 0.810648 GCTGGATCATTCGGCAACAA 59.189 50.000 0.00 0.00 0.00 2.83
2097 3290 1.202114 GCTGGATCATTCGGCAACAAA 59.798 47.619 0.00 0.00 0.00 2.83
2098 3291 2.733227 GCTGGATCATTCGGCAACAAAG 60.733 50.000 0.00 0.00 0.00 2.77
2099 3292 1.202114 TGGATCATTCGGCAACAAAGC 59.798 47.619 0.00 0.00 0.00 3.51
2100 3293 1.474077 GGATCATTCGGCAACAAAGCT 59.526 47.619 0.00 0.00 34.17 3.74
2101 3294 2.682856 GGATCATTCGGCAACAAAGCTA 59.317 45.455 0.00 0.00 34.17 3.32
2102 3295 3.242870 GGATCATTCGGCAACAAAGCTAG 60.243 47.826 0.00 0.00 34.17 3.42
2103 3296 2.083774 TCATTCGGCAACAAAGCTAGG 58.916 47.619 0.00 0.00 34.17 3.02
2104 3297 2.083774 CATTCGGCAACAAAGCTAGGA 58.916 47.619 0.00 0.00 34.17 2.94
2105 3298 1.519408 TTCGGCAACAAAGCTAGGAC 58.481 50.000 0.00 0.00 34.17 3.85
2106 3299 0.394938 TCGGCAACAAAGCTAGGACA 59.605 50.000 0.00 0.00 34.17 4.02
2107 3300 0.798776 CGGCAACAAAGCTAGGACAG 59.201 55.000 0.00 0.00 34.17 3.51
2115 3308 4.537433 GCTAGGACAGCCGGCCTG 62.537 72.222 26.15 22.42 45.23 4.85
2122 3315 3.685435 CAGCCGGCCTGTTTCAAT 58.315 55.556 26.15 0.00 36.79 2.57
2123 3316 1.966762 CAGCCGGCCTGTTTCAATT 59.033 52.632 26.15 0.00 36.79 2.32
2124 3317 0.388907 CAGCCGGCCTGTTTCAATTG 60.389 55.000 26.15 6.72 36.79 2.32
2125 3318 1.737735 GCCGGCCTGTTTCAATTGC 60.738 57.895 18.11 0.00 0.00 3.56
2126 3319 1.966762 CCGGCCTGTTTCAATTGCT 59.033 52.632 0.00 0.00 0.00 3.91
2127 3320 0.318120 CCGGCCTGTTTCAATTGCTT 59.682 50.000 0.00 0.00 0.00 3.91
2128 3321 1.270252 CCGGCCTGTTTCAATTGCTTT 60.270 47.619 0.00 0.00 0.00 3.51
2129 3322 2.482864 CGGCCTGTTTCAATTGCTTTT 58.517 42.857 0.00 0.00 0.00 2.27
2130 3323 2.871633 CGGCCTGTTTCAATTGCTTTTT 59.128 40.909 0.00 0.00 0.00 1.94
2131 3324 3.303263 CGGCCTGTTTCAATTGCTTTTTG 60.303 43.478 0.00 0.00 0.00 2.44
2132 3325 3.627123 GGCCTGTTTCAATTGCTTTTTGT 59.373 39.130 0.00 0.00 0.00 2.83
2133 3326 4.813697 GGCCTGTTTCAATTGCTTTTTGTA 59.186 37.500 0.00 0.00 0.00 2.41
2134 3327 5.050159 GGCCTGTTTCAATTGCTTTTTGTAG 60.050 40.000 0.00 0.00 0.00 2.74
2135 3328 5.558844 GCCTGTTTCAATTGCTTTTTGTAGC 60.559 40.000 0.00 0.00 41.59 3.58
2136 3329 5.050159 CCTGTTTCAATTGCTTTTTGTAGCC 60.050 40.000 0.00 0.00 40.49 3.93
2137 3330 5.423015 TGTTTCAATTGCTTTTTGTAGCCA 58.577 33.333 0.00 0.00 40.49 4.75
2138 3331 5.523188 TGTTTCAATTGCTTTTTGTAGCCAG 59.477 36.000 0.00 0.00 40.49 4.85
2139 3332 3.652274 TCAATTGCTTTTTGTAGCCAGC 58.348 40.909 0.00 0.00 40.49 4.85
2140 3333 2.738314 CAATTGCTTTTTGTAGCCAGCC 59.262 45.455 0.00 0.00 40.49 4.85
2141 3334 1.407936 TTGCTTTTTGTAGCCAGCCA 58.592 45.000 0.00 0.00 40.49 4.75
2142 3335 0.961019 TGCTTTTTGTAGCCAGCCAG 59.039 50.000 0.00 0.00 40.49 4.85
2143 3336 0.961753 GCTTTTTGTAGCCAGCCAGT 59.038 50.000 0.00 0.00 35.06 4.00
2144 3337 1.336240 GCTTTTTGTAGCCAGCCAGTG 60.336 52.381 0.00 0.00 35.06 3.66
2159 3352 3.088194 CCAGTGGCAAATCATATGTGC 57.912 47.619 7.99 7.99 37.55 4.57
2165 3358 2.921126 GCAAATCATATGTGCCGCTAC 58.079 47.619 1.90 0.00 31.94 3.58
2166 3359 2.662791 GCAAATCATATGTGCCGCTACG 60.663 50.000 1.90 0.00 31.94 3.51
2167 3360 2.799978 CAAATCATATGTGCCGCTACGA 59.200 45.455 1.90 0.00 0.00 3.43
2168 3361 2.065993 ATCATATGTGCCGCTACGAC 57.934 50.000 1.90 0.00 0.00 4.34
2169 3362 0.317519 TCATATGTGCCGCTACGACG 60.318 55.000 1.90 0.00 0.00 5.12
2186 3379 3.766691 GGCGTAGTCGGGGCTTCA 61.767 66.667 0.00 0.00 37.56 3.02
2187 3380 2.508663 GCGTAGTCGGGGCTTCAC 60.509 66.667 0.00 0.00 37.56 3.18
2188 3381 2.967397 CGTAGTCGGGGCTTCACA 59.033 61.111 0.00 0.00 0.00 3.58
2189 3382 1.445582 CGTAGTCGGGGCTTCACAC 60.446 63.158 0.00 0.00 0.00 3.82
2190 3383 1.669440 GTAGTCGGGGCTTCACACA 59.331 57.895 0.00 0.00 0.00 3.72
2191 3384 0.034337 GTAGTCGGGGCTTCACACAA 59.966 55.000 0.00 0.00 0.00 3.33
2192 3385 0.320374 TAGTCGGGGCTTCACACAAG 59.680 55.000 0.00 0.00 0.00 3.16
2193 3386 1.966451 GTCGGGGCTTCACACAAGG 60.966 63.158 0.00 0.00 0.00 3.61
2194 3387 2.672996 CGGGGCTTCACACAAGGG 60.673 66.667 0.00 0.00 0.00 3.95
2195 3388 2.991540 GGGGCTTCACACAAGGGC 60.992 66.667 0.00 0.00 0.00 5.19
2196 3389 2.116125 GGGCTTCACACAAGGGCT 59.884 61.111 0.00 0.00 0.00 5.19
2197 3390 1.973812 GGGCTTCACACAAGGGCTC 60.974 63.158 0.00 0.00 0.00 4.70
2198 3391 1.973812 GGCTTCACACAAGGGCTCC 60.974 63.158 0.00 0.00 0.00 4.70
2199 3392 1.973812 GCTTCACACAAGGGCTCCC 60.974 63.158 0.00 0.00 0.00 4.30
2200 3393 1.455849 CTTCACACAAGGGCTCCCA 59.544 57.895 7.82 0.00 38.92 4.37
2201 3394 0.890996 CTTCACACAAGGGCTCCCAC 60.891 60.000 7.82 0.00 38.92 4.61
2202 3395 2.282462 CACACAAGGGCTCCCACC 60.282 66.667 7.82 0.00 38.92 4.61
2203 3396 2.776526 ACACAAGGGCTCCCACCA 60.777 61.111 7.82 0.00 38.92 4.17
2204 3397 2.282462 CACAAGGGCTCCCACCAC 60.282 66.667 7.82 0.00 38.92 4.16
2205 3398 3.580319 ACAAGGGCTCCCACCACC 61.580 66.667 7.82 0.00 38.92 4.61
2206 3399 3.260100 CAAGGGCTCCCACCACCT 61.260 66.667 7.82 0.00 38.92 4.00
2207 3400 3.260100 AAGGGCTCCCACCACCTG 61.260 66.667 7.82 0.00 38.92 4.00
2225 3418 3.318384 GGCCGGCCCATTTTGGTT 61.318 61.111 36.64 0.00 35.17 3.67
2226 3419 2.747022 GCCGGCCCATTTTGGTTT 59.253 55.556 18.11 0.00 35.17 3.27
2227 3420 1.072332 GCCGGCCCATTTTGGTTTT 59.928 52.632 18.11 0.00 35.17 2.43
2228 3421 0.536233 GCCGGCCCATTTTGGTTTTT 60.536 50.000 18.11 0.00 35.17 1.94
2229 3422 1.270893 GCCGGCCCATTTTGGTTTTTA 60.271 47.619 18.11 0.00 35.17 1.52
2230 3423 2.616765 GCCGGCCCATTTTGGTTTTTAT 60.617 45.455 18.11 0.00 35.17 1.40
2231 3424 3.266636 CCGGCCCATTTTGGTTTTTATC 58.733 45.455 0.00 0.00 35.17 1.75
2232 3425 3.055458 CCGGCCCATTTTGGTTTTTATCT 60.055 43.478 0.00 0.00 35.17 1.98
2233 3426 4.564613 CCGGCCCATTTTGGTTTTTATCTT 60.565 41.667 0.00 0.00 35.17 2.40
2234 3427 5.000591 CGGCCCATTTTGGTTTTTATCTTT 58.999 37.500 0.00 0.00 35.17 2.52
2235 3428 5.106752 CGGCCCATTTTGGTTTTTATCTTTG 60.107 40.000 0.00 0.00 35.17 2.77
2236 3429 5.335583 GGCCCATTTTGGTTTTTATCTTTGC 60.336 40.000 0.00 0.00 35.17 3.68
2237 3430 5.240403 GCCCATTTTGGTTTTTATCTTTGCA 59.760 36.000 0.00 0.00 35.17 4.08
2238 3431 6.568271 GCCCATTTTGGTTTTTATCTTTGCAG 60.568 38.462 0.00 0.00 35.17 4.41
2239 3432 6.486320 CCCATTTTGGTTTTTATCTTTGCAGT 59.514 34.615 0.00 0.00 35.17 4.40
2240 3433 7.013178 CCCATTTTGGTTTTTATCTTTGCAGTT 59.987 33.333 0.00 0.00 35.17 3.16
2241 3434 8.404765 CCATTTTGGTTTTTATCTTTGCAGTTT 58.595 29.630 0.00 0.00 31.35 2.66
2242 3435 9.437045 CATTTTGGTTTTTATCTTTGCAGTTTC 57.563 29.630 0.00 0.00 0.00 2.78
2243 3436 6.820470 TTGGTTTTTATCTTTGCAGTTTCG 57.180 33.333 0.00 0.00 0.00 3.46
2244 3437 5.897050 TGGTTTTTATCTTTGCAGTTTCGT 58.103 33.333 0.00 0.00 0.00 3.85
2245 3438 6.334202 TGGTTTTTATCTTTGCAGTTTCGTT 58.666 32.000 0.00 0.00 0.00 3.85
2246 3439 6.814146 TGGTTTTTATCTTTGCAGTTTCGTTT 59.186 30.769 0.00 0.00 0.00 3.60
2247 3440 7.332182 TGGTTTTTATCTTTGCAGTTTCGTTTT 59.668 29.630 0.00 0.00 0.00 2.43
2248 3441 8.172484 GGTTTTTATCTTTGCAGTTTCGTTTTT 58.828 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.918608 AGGCGATTATATCAAAGTCAGTGT 58.081 37.500 0.00 0.00 0.00 3.55
69 74 7.118825 CCATGTATGTGCACATAGATTCCTTAG 59.881 40.741 34.77 25.08 39.78 2.18
118 132 8.260818 TCTAACCTCCATAATGTCTTTCTTCTG 58.739 37.037 0.00 0.00 0.00 3.02
119 133 8.380742 TCTAACCTCCATAATGTCTTTCTTCT 57.619 34.615 0.00 0.00 0.00 2.85
121 135 8.049721 CCTTCTAACCTCCATAATGTCTTTCTT 58.950 37.037 0.00 0.00 0.00 2.52
128 142 4.721776 TCTGCCTTCTAACCTCCATAATGT 59.278 41.667 0.00 0.00 0.00 2.71
129 143 5.296151 TCTGCCTTCTAACCTCCATAATG 57.704 43.478 0.00 0.00 0.00 1.90
136 150 6.174049 ACAACTTAATCTGCCTTCTAACCTC 58.826 40.000 0.00 0.00 0.00 3.85
143 164 5.049680 TGAAACGACAACTTAATCTGCCTTC 60.050 40.000 0.00 0.00 0.00 3.46
170 191 7.616313 AGACTTAGCAAAACTGATAAGCTAGT 58.384 34.615 9.44 0.00 40.31 2.57
175 196 5.869888 ACCGAGACTTAGCAAAACTGATAAG 59.130 40.000 8.24 8.24 41.81 1.73
184 205 3.069016 TCAGTCAACCGAGACTTAGCAAA 59.931 43.478 2.94 0.00 46.26 3.68
195 216 5.047306 ACATAATGAAGTCTCAGTCAACCGA 60.047 40.000 0.00 0.00 34.23 4.69
200 221 5.869344 CCGAAACATAATGAAGTCTCAGTCA 59.131 40.000 0.00 0.00 34.23 3.41
203 224 5.004821 CGACCGAAACATAATGAAGTCTCAG 59.995 44.000 0.00 0.00 34.23 3.35
204 225 4.862574 CGACCGAAACATAATGAAGTCTCA 59.137 41.667 0.00 0.00 35.56 3.27
206 227 4.817517 ACGACCGAAACATAATGAAGTCT 58.182 39.130 0.00 0.00 0.00 3.24
213 234 7.656137 AGAATATAGCAACGACCGAAACATAAT 59.344 33.333 0.00 0.00 0.00 1.28
219 240 6.369340 TCAAAAGAATATAGCAACGACCGAAA 59.631 34.615 0.00 0.00 0.00 3.46
220 241 5.870433 TCAAAAGAATATAGCAACGACCGAA 59.130 36.000 0.00 0.00 0.00 4.30
222 243 5.712217 TCAAAAGAATATAGCAACGACCG 57.288 39.130 0.00 0.00 0.00 4.79
223 244 8.798153 CAAAATCAAAAGAATATAGCAACGACC 58.202 33.333 0.00 0.00 0.00 4.79
226 247 8.172159 TGCAAAATCAAAAGAATATAGCAACG 57.828 30.769 0.00 0.00 0.00 4.10
228 249 9.100554 CCATGCAAAATCAAAAGAATATAGCAA 57.899 29.630 0.00 0.00 0.00 3.91
239 260 5.782047 ACGAATCTCCATGCAAAATCAAAA 58.218 33.333 0.00 0.00 0.00 2.44
300 321 6.761242 TCTCAATCGACTTTGACTTGAAGAAA 59.239 34.615 0.00 0.00 32.39 2.52
303 324 5.107298 GGTCTCAATCGACTTTGACTTGAAG 60.107 44.000 0.00 0.00 34.38 3.02
305 326 4.039245 AGGTCTCAATCGACTTTGACTTGA 59.961 41.667 0.00 0.00 34.38 3.02
307 328 4.608948 AGGTCTCAATCGACTTTGACTT 57.391 40.909 0.00 0.00 34.38 3.01
312 338 2.832129 TGGCTAGGTCTCAATCGACTTT 59.168 45.455 0.00 0.00 34.38 2.66
313 339 2.166664 GTGGCTAGGTCTCAATCGACTT 59.833 50.000 0.00 0.00 34.38 3.01
318 344 1.134371 GGGTGTGGCTAGGTCTCAATC 60.134 57.143 0.00 0.00 0.00 2.67
320 346 1.198759 GGGGTGTGGCTAGGTCTCAA 61.199 60.000 0.00 0.00 0.00 3.02
326 352 0.831307 GAACTAGGGGTGTGGCTAGG 59.169 60.000 0.00 0.00 0.00 3.02
345 371 1.068127 GCATCTAAAAGCCAGGGCATG 59.932 52.381 13.63 7.33 44.88 4.06
356 382 5.929058 TTGTGCCCAATATGCATCTAAAA 57.071 34.783 0.19 0.00 41.46 1.52
423 449 7.229306 CCATCAGAGGCAAAAATAATAGCACTA 59.771 37.037 0.00 0.00 0.00 2.74
494 523 8.567198 TGGCCCATTGCTAGTAATATATAGAT 57.433 34.615 5.69 0.00 40.92 1.98
500 529 4.292041 TGGATGGCCCATTGCTAGTAATAT 59.708 41.667 5.69 0.00 40.82 1.28
521 697 8.546230 AACCATATCCAAATTTGGTGGCATGG 62.546 42.308 32.39 32.39 43.81 3.66
627 807 7.306983 GCACAAGAAATTCTGAGAAAACCAATG 60.307 37.037 0.00 0.00 0.00 2.82
647 987 7.254852 TGACTAACAAAAGTTAAAGGCACAAG 58.745 34.615 0.00 0.00 0.00 3.16
728 1074 2.436417 GAGCAAAACTACTGGATGGCA 58.564 47.619 0.00 0.00 0.00 4.92
732 1078 1.003118 TGGCGAGCAAAACTACTGGAT 59.997 47.619 0.00 0.00 0.00 3.41
737 1083 1.617740 GCATTGGCGAGCAAAACTAC 58.382 50.000 0.00 0.00 0.00 2.73
828 1185 1.431496 GCAAATGCGATGCAAAAGGT 58.569 45.000 0.00 0.00 43.62 3.50
938 1328 1.954362 ATCTGTCTCTGCGACTGGCC 61.954 60.000 0.00 0.00 43.25 5.36
1242 1647 2.435586 CCTCCTCTGCTGCCGTTG 60.436 66.667 0.00 0.00 0.00 4.10
1294 1699 4.021104 TGATCCGATCCATCCATCAACTAC 60.021 45.833 5.91 0.00 0.00 2.73
1295 1700 4.159557 TGATCCGATCCATCCATCAACTA 58.840 43.478 5.91 0.00 0.00 2.24
1296 1701 2.974794 TGATCCGATCCATCCATCAACT 59.025 45.455 5.91 0.00 0.00 3.16
1297 1702 3.407424 TGATCCGATCCATCCATCAAC 57.593 47.619 5.91 0.00 0.00 3.18
1298 1703 3.871074 GCATGATCCGATCCATCCATCAA 60.871 47.826 5.91 0.00 30.68 2.57
1299 1704 2.355412 GCATGATCCGATCCATCCATCA 60.355 50.000 5.91 0.00 31.15 3.07
1300 1705 2.286872 GCATGATCCGATCCATCCATC 58.713 52.381 5.91 0.00 0.00 3.51
1347 1759 1.195115 TAGGGCTCATGTGAGTGTCC 58.805 55.000 11.35 10.29 43.85 4.02
1349 1761 1.765314 GGATAGGGCTCATGTGAGTGT 59.235 52.381 11.35 0.24 43.85 3.55
1350 1762 2.045524 AGGATAGGGCTCATGTGAGTG 58.954 52.381 11.35 0.00 43.85 3.51
1351 1763 2.485966 AGGATAGGGCTCATGTGAGT 57.514 50.000 11.35 0.00 43.85 3.41
1354 1766 5.481824 TGTAGATTAGGATAGGGCTCATGTG 59.518 44.000 0.00 0.00 0.00 3.21
1361 1778 4.467795 TGCAGATGTAGATTAGGATAGGGC 59.532 45.833 0.00 0.00 0.00 5.19
1373 1790 9.643693 CATGTATGTATGTAATGCAGATGTAGA 57.356 33.333 0.00 0.00 43.77 2.59
1374 1791 9.428097 ACATGTATGTATGTAATGCAGATGTAG 57.572 33.333 0.00 0.00 43.77 2.74
1376 1793 9.428097 CTACATGTATGTATGTAATGCAGATGT 57.572 33.333 5.91 0.00 43.77 3.06
1377 1794 8.385858 GCTACATGTATGTATGTAATGCAGATG 58.614 37.037 5.91 0.00 43.77 2.90
1554 1989 2.367567 AGAGGGAGTAGTTCGCAAACAA 59.632 45.455 0.00 0.00 41.01 2.83
1629 2064 8.975295 ACTGTTACTTCCTCCGTAAACTAATAT 58.025 33.333 0.00 0.00 0.00 1.28
1630 2065 8.246180 CACTGTTACTTCCTCCGTAAACTAATA 58.754 37.037 0.00 0.00 0.00 0.98
1631 2066 7.095270 CACTGTTACTTCCTCCGTAAACTAAT 58.905 38.462 0.00 0.00 0.00 1.73
1632 2067 6.040842 ACACTGTTACTTCCTCCGTAAACTAA 59.959 38.462 0.00 0.00 0.00 2.24
1633 2068 5.536161 ACACTGTTACTTCCTCCGTAAACTA 59.464 40.000 0.00 0.00 0.00 2.24
1634 2069 4.343239 ACACTGTTACTTCCTCCGTAAACT 59.657 41.667 0.00 0.00 0.00 2.66
1635 2070 4.446719 CACACTGTTACTTCCTCCGTAAAC 59.553 45.833 0.00 0.00 0.00 2.01
1636 2071 4.624015 CACACTGTTACTTCCTCCGTAAA 58.376 43.478 0.00 0.00 0.00 2.01
1637 2072 3.553508 GCACACTGTTACTTCCTCCGTAA 60.554 47.826 0.00 0.00 0.00 3.18
1638 2073 2.029649 GCACACTGTTACTTCCTCCGTA 60.030 50.000 0.00 0.00 0.00 4.02
1639 2074 1.270147 GCACACTGTTACTTCCTCCGT 60.270 52.381 0.00 0.00 0.00 4.69
1640 2075 1.000955 AGCACACTGTTACTTCCTCCG 59.999 52.381 0.00 0.00 0.00 4.63
1641 2076 2.841442 AGCACACTGTTACTTCCTCC 57.159 50.000 0.00 0.00 0.00 4.30
1642 2077 3.056465 AGCTAGCACACTGTTACTTCCTC 60.056 47.826 18.83 0.00 0.00 3.71
1643 2078 2.900546 AGCTAGCACACTGTTACTTCCT 59.099 45.455 18.83 0.00 0.00 3.36
1644 2079 2.996621 CAGCTAGCACACTGTTACTTCC 59.003 50.000 18.83 0.00 0.00 3.46
1648 2083 2.457366 ACCAGCTAGCACACTGTTAC 57.543 50.000 18.83 0.00 31.76 2.50
1650 2085 2.550208 GGTAACCAGCTAGCACACTGTT 60.550 50.000 18.83 13.72 31.76 3.16
1665 2100 5.047519 ACACATACACACAGAGTAGGTAACC 60.048 44.000 0.00 0.00 34.62 2.85
1668 2103 4.082408 GCACACATACACACAGAGTAGGTA 60.082 45.833 0.00 0.00 34.62 3.08
1670 2105 3.056536 AGCACACATACACACAGAGTAGG 60.057 47.826 0.00 0.00 0.00 3.18
1671 2106 3.922850 CAGCACACATACACACAGAGTAG 59.077 47.826 0.00 0.00 0.00 2.57
1672 2107 3.860754 GCAGCACACATACACACAGAGTA 60.861 47.826 0.00 0.00 0.00 2.59
1676 2111 0.518636 GGCAGCACACATACACACAG 59.481 55.000 0.00 0.00 0.00 3.66
1683 2118 2.777832 TGTACATGGCAGCACACATA 57.222 45.000 0.00 0.00 0.00 2.29
1684 2119 2.133281 ATGTACATGGCAGCACACAT 57.867 45.000 7.78 0.00 0.00 3.21
1685 2120 2.289945 TGTATGTACATGGCAGCACACA 60.290 45.455 18.81 8.98 0.00 3.72
1687 2122 2.777832 TGTATGTACATGGCAGCACA 57.222 45.000 18.81 10.42 0.00 4.57
1689 2124 4.414337 TGTATGTATGTACATGGCAGCA 57.586 40.909 18.81 15.10 45.77 4.41
1699 2134 7.120789 CGTAGACGTACCATGTATGTATGTA 57.879 40.000 5.71 0.00 34.11 2.29
1716 2151 3.427528 AGCACATGTACAAAACGTAGACG 59.572 43.478 0.00 0.00 46.33 4.18
1717 2152 4.985044 AGCACATGTACAAAACGTAGAC 57.015 40.909 0.00 0.00 0.00 2.59
1718 2153 4.812091 ACAAGCACATGTACAAAACGTAGA 59.188 37.500 0.00 0.00 0.00 2.59
1719 2154 5.090652 ACAAGCACATGTACAAAACGTAG 57.909 39.130 0.00 0.00 0.00 3.51
1721 2156 4.812091 TCTACAAGCACATGTACAAAACGT 59.188 37.500 0.00 0.00 34.75 3.99
1722 2157 5.337219 TCTACAAGCACATGTACAAAACG 57.663 39.130 0.00 0.00 34.75 3.60
1723 2158 7.138736 ACAATCTACAAGCACATGTACAAAAC 58.861 34.615 0.00 0.00 34.75 2.43
1767 2929 7.883311 ACGGATTATCTTTTTCTTCAAGGAAGA 59.117 33.333 4.64 4.64 45.45 2.87
1775 2937 5.938322 TGCACACGGATTATCTTTTTCTTC 58.062 37.500 0.00 0.00 0.00 2.87
1780 2942 4.759693 TGACTTGCACACGGATTATCTTTT 59.240 37.500 0.00 0.00 0.00 2.27
1784 2946 4.496341 CCAATGACTTGCACACGGATTATC 60.496 45.833 0.00 0.00 0.00 1.75
1806 2968 4.868734 AGAAGCACTTAATTAGCGTGTACC 59.131 41.667 14.58 7.26 0.00 3.34
1808 2970 6.395629 AGAAGAAGCACTTAATTAGCGTGTA 58.604 36.000 14.58 0.00 39.13 2.90
1809 2971 5.238583 AGAAGAAGCACTTAATTAGCGTGT 58.761 37.500 14.58 0.00 39.13 4.49
1810 2972 5.786401 AGAAGAAGCACTTAATTAGCGTG 57.214 39.130 10.83 10.83 39.13 5.34
1811 2973 9.595823 TTTATAGAAGAAGCACTTAATTAGCGT 57.404 29.630 0.00 0.00 39.13 5.07
1812 2974 9.851043 GTTTATAGAAGAAGCACTTAATTAGCG 57.149 33.333 0.00 0.00 39.13 4.26
1847 3009 9.535878 CCCTCTACTTTAGTGATCTAAAACATC 57.464 37.037 0.00 0.00 42.97 3.06
1848 3010 9.268282 TCCCTCTACTTTAGTGATCTAAAACAT 57.732 33.333 0.00 0.00 42.97 2.71
1849 3011 8.660295 TCCCTCTACTTTAGTGATCTAAAACA 57.340 34.615 0.00 0.00 42.97 2.83
1850 3012 8.751242 ACTCCCTCTACTTTAGTGATCTAAAAC 58.249 37.037 0.00 0.00 42.97 2.43
1851 3013 8.896722 ACTCCCTCTACTTTAGTGATCTAAAA 57.103 34.615 0.00 0.00 42.97 1.52
1852 3014 9.406113 GTACTCCCTCTACTTTAGTGATCTAAA 57.594 37.037 0.00 0.00 41.87 1.85
1853 3015 7.997803 GGTACTCCCTCTACTTTAGTGATCTAA 59.002 40.741 0.00 0.00 34.76 2.10
1866 3028 7.842887 AGAAGAAATATGGTACTCCCTCTAC 57.157 40.000 0.00 0.00 0.00 2.59
1869 3031 8.809468 AAAAAGAAGAAATATGGTACTCCCTC 57.191 34.615 0.00 0.00 0.00 4.30
1871 3033 8.678199 CAGAAAAAGAAGAAATATGGTACTCCC 58.322 37.037 0.00 0.00 0.00 4.30
1872 3034 9.232473 ACAGAAAAAGAAGAAATATGGTACTCC 57.768 33.333 0.00 0.00 0.00 3.85
1874 3036 9.793259 TCACAGAAAAAGAAGAAATATGGTACT 57.207 29.630 0.00 0.00 0.00 2.73
1912 3075 5.046807 GTGGTAACTCCTAGCCAAAAGAGTA 60.047 44.000 0.00 0.00 38.61 2.59
1913 3076 3.908103 TGGTAACTCCTAGCCAAAAGAGT 59.092 43.478 0.00 0.00 41.25 3.24
1914 3077 4.254492 GTGGTAACTCCTAGCCAAAAGAG 58.746 47.826 0.00 0.00 37.07 2.85
1915 3078 3.649023 TGTGGTAACTCCTAGCCAAAAGA 59.351 43.478 0.00 0.00 37.07 2.52
1917 3080 4.650972 ATGTGGTAACTCCTAGCCAAAA 57.349 40.909 0.00 0.00 37.07 2.44
1919 3082 3.585289 TGAATGTGGTAACTCCTAGCCAA 59.415 43.478 0.00 0.00 37.07 4.52
1920 3083 3.178046 TGAATGTGGTAACTCCTAGCCA 58.822 45.455 0.00 0.00 37.07 4.75
1922 3085 5.675538 AGAATGAATGTGGTAACTCCTAGC 58.324 41.667 0.00 0.00 37.07 3.42
1924 3087 7.252612 TGAAGAATGAATGTGGTAACTCCTA 57.747 36.000 0.00 0.00 37.07 2.94
1925 3088 6.126863 TGAAGAATGAATGTGGTAACTCCT 57.873 37.500 0.00 0.00 37.07 3.69
1926 3089 6.599244 TCATGAAGAATGAATGTGGTAACTCC 59.401 38.462 0.00 0.00 42.49 3.85
1929 3122 6.127925 TGCTCATGAAGAATGAATGTGGTAAC 60.128 38.462 0.00 0.00 44.77 2.50
1933 3126 4.439700 GGTGCTCATGAAGAATGAATGTGG 60.440 45.833 0.00 0.00 44.77 4.17
1985 3178 4.854399 TGGCTTTCACTGTACAAAAATCG 58.146 39.130 0.00 0.00 0.00 3.34
1993 3186 3.246226 CGCTATGATGGCTTTCACTGTAC 59.754 47.826 0.00 0.00 0.00 2.90
1994 3187 3.132111 TCGCTATGATGGCTTTCACTGTA 59.868 43.478 0.00 0.00 0.00 2.74
1995 3188 2.093500 TCGCTATGATGGCTTTCACTGT 60.093 45.455 0.00 0.00 0.00 3.55
1996 3189 2.286294 GTCGCTATGATGGCTTTCACTG 59.714 50.000 0.00 0.00 0.00 3.66
2034 3227 1.671845 CGACCACCGAGAAACCAAAAA 59.328 47.619 0.00 0.00 41.76 1.94
2035 3228 1.134461 TCGACCACCGAGAAACCAAAA 60.134 47.619 0.00 0.00 43.23 2.44
2036 3229 0.464870 TCGACCACCGAGAAACCAAA 59.535 50.000 0.00 0.00 43.23 3.28
2037 3230 2.126064 TCGACCACCGAGAAACCAA 58.874 52.632 0.00 0.00 43.23 3.67
2038 3231 3.859221 TCGACCACCGAGAAACCA 58.141 55.556 0.00 0.00 43.23 3.67
2045 3238 2.261361 CACATGCTCGACCACCGA 59.739 61.111 0.00 0.00 46.35 4.69
2046 3239 2.048222 ACACATGCTCGACCACCG 60.048 61.111 0.00 0.00 40.25 4.94
2047 3240 0.037697 TACACACATGCTCGACCACC 60.038 55.000 0.00 0.00 0.00 4.61
2048 3241 1.067846 TCTACACACATGCTCGACCAC 60.068 52.381 0.00 0.00 0.00 4.16
2049 3242 1.253100 TCTACACACATGCTCGACCA 58.747 50.000 0.00 0.00 0.00 4.02
2050 3243 2.363788 TTCTACACACATGCTCGACC 57.636 50.000 0.00 0.00 0.00 4.79
2051 3244 3.123621 CCTTTTCTACACACATGCTCGAC 59.876 47.826 0.00 0.00 0.00 4.20
2052 3245 3.325870 CCTTTTCTACACACATGCTCGA 58.674 45.455 0.00 0.00 0.00 4.04
2053 3246 2.159653 GCCTTTTCTACACACATGCTCG 60.160 50.000 0.00 0.00 0.00 5.03
2054 3247 2.162408 GGCCTTTTCTACACACATGCTC 59.838 50.000 0.00 0.00 0.00 4.26
2055 3248 2.162681 GGCCTTTTCTACACACATGCT 58.837 47.619 0.00 0.00 0.00 3.79
2056 3249 2.095059 CAGGCCTTTTCTACACACATGC 60.095 50.000 0.00 0.00 0.00 4.06
2057 3250 2.095059 GCAGGCCTTTTCTACACACATG 60.095 50.000 0.00 0.00 0.00 3.21
2058 3251 2.162681 GCAGGCCTTTTCTACACACAT 58.837 47.619 0.00 0.00 0.00 3.21
2059 3252 1.142870 AGCAGGCCTTTTCTACACACA 59.857 47.619 0.00 0.00 0.00 3.72
2060 3253 1.537202 CAGCAGGCCTTTTCTACACAC 59.463 52.381 0.00 0.00 0.00 3.82
2061 3254 1.545428 CCAGCAGGCCTTTTCTACACA 60.545 52.381 0.00 0.00 0.00 3.72
2062 3255 1.168714 CCAGCAGGCCTTTTCTACAC 58.831 55.000 0.00 0.00 0.00 2.90
2063 3256 1.064003 TCCAGCAGGCCTTTTCTACA 58.936 50.000 0.00 0.00 33.74 2.74
2064 3257 2.293170 GATCCAGCAGGCCTTTTCTAC 58.707 52.381 0.00 0.00 33.74 2.59
2065 3258 1.915489 TGATCCAGCAGGCCTTTTCTA 59.085 47.619 0.00 0.00 33.74 2.10
2066 3259 0.700564 TGATCCAGCAGGCCTTTTCT 59.299 50.000 0.00 0.00 33.74 2.52
2067 3260 1.772836 ATGATCCAGCAGGCCTTTTC 58.227 50.000 0.00 0.00 33.74 2.29
2068 3261 2.105766 GAATGATCCAGCAGGCCTTTT 58.894 47.619 0.00 0.00 33.74 2.27
2069 3262 1.772836 GAATGATCCAGCAGGCCTTT 58.227 50.000 0.00 0.00 33.74 3.11
2070 3263 0.465097 CGAATGATCCAGCAGGCCTT 60.465 55.000 0.00 0.00 33.74 4.35
2071 3264 1.147824 CGAATGATCCAGCAGGCCT 59.852 57.895 0.00 0.00 33.74 5.19
2072 3265 1.895707 CCGAATGATCCAGCAGGCC 60.896 63.158 0.00 0.00 33.74 5.19
2073 3266 2.550101 GCCGAATGATCCAGCAGGC 61.550 63.158 0.00 0.00 36.08 4.85
2074 3267 0.749091 TTGCCGAATGATCCAGCAGG 60.749 55.000 0.00 0.00 34.09 4.85
2075 3268 0.379669 GTTGCCGAATGATCCAGCAG 59.620 55.000 0.00 0.00 34.09 4.24
2076 3269 0.322366 TGTTGCCGAATGATCCAGCA 60.322 50.000 0.00 0.00 31.49 4.41
2077 3270 0.810648 TTGTTGCCGAATGATCCAGC 59.189 50.000 0.00 0.00 0.00 4.85
2078 3271 2.733227 GCTTTGTTGCCGAATGATCCAG 60.733 50.000 0.00 0.00 0.00 3.86
2079 3272 1.202114 GCTTTGTTGCCGAATGATCCA 59.798 47.619 0.00 0.00 0.00 3.41
2080 3273 1.474077 AGCTTTGTTGCCGAATGATCC 59.526 47.619 0.00 0.00 0.00 3.36
2081 3274 2.927553 AGCTTTGTTGCCGAATGATC 57.072 45.000 0.00 0.00 0.00 2.92
2082 3275 2.684881 CCTAGCTTTGTTGCCGAATGAT 59.315 45.455 0.00 0.00 0.00 2.45
2083 3276 2.083774 CCTAGCTTTGTTGCCGAATGA 58.916 47.619 0.00 0.00 0.00 2.57
2084 3277 2.083774 TCCTAGCTTTGTTGCCGAATG 58.916 47.619 0.00 0.00 0.00 2.67
2085 3278 2.084546 GTCCTAGCTTTGTTGCCGAAT 58.915 47.619 0.00 0.00 0.00 3.34
2086 3279 1.202710 TGTCCTAGCTTTGTTGCCGAA 60.203 47.619 0.00 0.00 0.00 4.30
2087 3280 0.394938 TGTCCTAGCTTTGTTGCCGA 59.605 50.000 0.00 0.00 0.00 5.54
2088 3281 0.798776 CTGTCCTAGCTTTGTTGCCG 59.201 55.000 0.00 0.00 0.00 5.69
2099 3292 2.185310 AAACAGGCCGGCTGTCCTAG 62.185 60.000 28.56 11.58 33.41 3.02
2100 3293 2.180159 GAAACAGGCCGGCTGTCCTA 62.180 60.000 28.56 0.00 33.41 2.94
2101 3294 3.553095 GAAACAGGCCGGCTGTCCT 62.553 63.158 28.56 16.98 33.41 3.85
2102 3295 3.056328 GAAACAGGCCGGCTGTCC 61.056 66.667 28.56 17.39 33.41 4.02
2103 3296 1.244019 ATTGAAACAGGCCGGCTGTC 61.244 55.000 28.56 15.93 33.41 3.51
2104 3297 0.827507 AATTGAAACAGGCCGGCTGT 60.828 50.000 28.56 24.19 36.49 4.40
2105 3298 0.388907 CAATTGAAACAGGCCGGCTG 60.389 55.000 28.56 23.51 0.00 4.85
2106 3299 1.966762 CAATTGAAACAGGCCGGCT 59.033 52.632 28.56 9.77 0.00 5.52
2107 3300 1.737735 GCAATTGAAACAGGCCGGC 60.738 57.895 21.18 21.18 0.00 6.13
2108 3301 0.318120 AAGCAATTGAAACAGGCCGG 59.682 50.000 10.34 0.00 0.00 6.13
2109 3302 2.153366 AAAGCAATTGAAACAGGCCG 57.847 45.000 10.34 0.00 0.00 6.13
2110 3303 3.627123 ACAAAAAGCAATTGAAACAGGCC 59.373 39.130 10.34 0.00 0.00 5.19
2111 3304 4.880886 ACAAAAAGCAATTGAAACAGGC 57.119 36.364 10.34 0.00 0.00 4.85
2112 3305 5.050159 GGCTACAAAAAGCAATTGAAACAGG 60.050 40.000 10.34 0.00 44.64 4.00
2113 3306 5.523188 TGGCTACAAAAAGCAATTGAAACAG 59.477 36.000 10.34 0.00 44.64 3.16
2114 3307 5.423015 TGGCTACAAAAAGCAATTGAAACA 58.577 33.333 10.34 0.00 44.64 2.83
2115 3308 5.558844 GCTGGCTACAAAAAGCAATTGAAAC 60.559 40.000 10.34 0.00 44.64 2.78
2116 3309 4.511082 GCTGGCTACAAAAAGCAATTGAAA 59.489 37.500 10.34 0.00 44.64 2.69
2117 3310 4.057432 GCTGGCTACAAAAAGCAATTGAA 58.943 39.130 10.34 0.00 44.64 2.69
2118 3311 3.554752 GGCTGGCTACAAAAAGCAATTGA 60.555 43.478 10.34 0.00 44.64 2.57
2119 3312 2.738314 GGCTGGCTACAAAAAGCAATTG 59.262 45.455 0.00 0.00 44.64 2.32
2120 3313 2.368221 TGGCTGGCTACAAAAAGCAATT 59.632 40.909 2.00 0.00 44.64 2.32
2121 3314 1.969923 TGGCTGGCTACAAAAAGCAAT 59.030 42.857 2.00 0.00 44.64 3.56
2122 3315 1.340889 CTGGCTGGCTACAAAAAGCAA 59.659 47.619 2.00 0.00 44.64 3.91
2123 3316 0.961019 CTGGCTGGCTACAAAAAGCA 59.039 50.000 2.00 0.00 44.64 3.91
2124 3317 0.961753 ACTGGCTGGCTACAAAAAGC 59.038 50.000 2.00 0.00 41.99 3.51
2125 3318 1.270550 CCACTGGCTGGCTACAAAAAG 59.729 52.381 2.00 0.00 31.36 2.27
2126 3319 1.327303 CCACTGGCTGGCTACAAAAA 58.673 50.000 2.00 0.00 31.36 1.94
2127 3320 3.034924 CCACTGGCTGGCTACAAAA 57.965 52.632 2.00 0.00 31.36 2.44
2128 3321 4.819783 CCACTGGCTGGCTACAAA 57.180 55.556 2.00 0.00 31.36 2.83
2139 3332 3.088194 GCACATATGATTTGCCACTGG 57.912 47.619 10.38 0.00 0.00 4.00
2145 3338 2.662791 CGTAGCGGCACATATGATTTGC 60.663 50.000 10.38 8.97 35.40 3.68
2146 3339 2.799978 TCGTAGCGGCACATATGATTTG 59.200 45.455 10.38 0.00 0.00 2.32
2147 3340 2.800544 GTCGTAGCGGCACATATGATTT 59.199 45.455 10.38 0.00 0.00 2.17
2148 3341 2.404215 GTCGTAGCGGCACATATGATT 58.596 47.619 10.38 0.00 0.00 2.57
2149 3342 1.666023 CGTCGTAGCGGCACATATGAT 60.666 52.381 10.38 0.00 0.00 2.45
2150 3343 0.317519 CGTCGTAGCGGCACATATGA 60.318 55.000 10.38 0.00 0.00 2.15
2151 3344 1.275471 CCGTCGTAGCGGCACATATG 61.275 60.000 1.45 0.00 45.47 1.78
2152 3345 1.007734 CCGTCGTAGCGGCACATAT 60.008 57.895 1.45 0.00 45.47 1.78
2153 3346 2.410060 CCGTCGTAGCGGCACATA 59.590 61.111 1.45 0.00 45.47 2.29
2168 3361 4.867599 GAAGCCCCGACTACGCCG 62.868 72.222 0.00 0.00 38.29 6.46
2169 3362 3.766691 TGAAGCCCCGACTACGCC 61.767 66.667 0.00 0.00 38.29 5.68
2170 3363 2.508663 GTGAAGCCCCGACTACGC 60.509 66.667 0.00 0.00 38.29 4.42
2171 3364 1.445582 GTGTGAAGCCCCGACTACG 60.446 63.158 0.00 0.00 39.43 3.51
2172 3365 0.034337 TTGTGTGAAGCCCCGACTAC 59.966 55.000 0.00 0.00 0.00 2.73
2173 3366 0.320374 CTTGTGTGAAGCCCCGACTA 59.680 55.000 0.00 0.00 0.00 2.59
2174 3367 1.071471 CTTGTGTGAAGCCCCGACT 59.929 57.895 0.00 0.00 0.00 4.18
2175 3368 1.966451 CCTTGTGTGAAGCCCCGAC 60.966 63.158 0.00 0.00 0.00 4.79
2176 3369 2.429930 CCTTGTGTGAAGCCCCGA 59.570 61.111 0.00 0.00 0.00 5.14
2177 3370 2.672996 CCCTTGTGTGAAGCCCCG 60.673 66.667 0.00 0.00 0.00 5.73
2178 3371 2.991540 GCCCTTGTGTGAAGCCCC 60.992 66.667 0.00 0.00 0.00 5.80
2179 3372 1.973812 GAGCCCTTGTGTGAAGCCC 60.974 63.158 0.00 0.00 0.00 5.19
2180 3373 1.973812 GGAGCCCTTGTGTGAAGCC 60.974 63.158 0.00 0.00 0.00 4.35
2181 3374 1.973812 GGGAGCCCTTGTGTGAAGC 60.974 63.158 0.00 0.00 0.00 3.86
2182 3375 0.890996 GTGGGAGCCCTTGTGTGAAG 60.891 60.000 7.16 0.00 36.94 3.02
2183 3376 1.150536 GTGGGAGCCCTTGTGTGAA 59.849 57.895 7.16 0.00 36.94 3.18
2184 3377 2.829384 GGTGGGAGCCCTTGTGTGA 61.829 63.158 7.16 0.00 36.94 3.58
2185 3378 2.282462 GGTGGGAGCCCTTGTGTG 60.282 66.667 7.16 0.00 36.94 3.82
2186 3379 2.776526 TGGTGGGAGCCCTTGTGT 60.777 61.111 7.16 0.00 36.94 3.72
2187 3380 2.282462 GTGGTGGGAGCCCTTGTG 60.282 66.667 7.16 0.00 36.94 3.33
2188 3381 3.580319 GGTGGTGGGAGCCCTTGT 61.580 66.667 7.16 0.00 36.94 3.16
2189 3382 3.260100 AGGTGGTGGGAGCCCTTG 61.260 66.667 7.16 0.00 36.94 3.61
2190 3383 3.260100 CAGGTGGTGGGAGCCCTT 61.260 66.667 7.16 0.00 36.94 3.95
2208 3401 2.404566 AAAACCAAAATGGGCCGGCC 62.405 55.000 38.57 38.57 43.37 6.13
2209 3402 0.536233 AAAAACCAAAATGGGCCGGC 60.536 50.000 21.18 21.18 43.37 6.13
2210 3403 2.841442 TAAAAACCAAAATGGGCCGG 57.159 45.000 0.00 0.00 43.37 6.13
2211 3404 4.200838 AGATAAAAACCAAAATGGGCCG 57.799 40.909 0.00 0.00 43.37 6.13
2212 3405 5.335583 GCAAAGATAAAAACCAAAATGGGCC 60.336 40.000 0.00 0.00 43.37 5.80
2213 3406 5.240403 TGCAAAGATAAAAACCAAAATGGGC 59.760 36.000 0.87 0.00 43.37 5.36
2214 3407 6.486320 ACTGCAAAGATAAAAACCAAAATGGG 59.514 34.615 0.87 0.00 43.37 4.00
2215 3408 7.495135 ACTGCAAAGATAAAAACCAAAATGG 57.505 32.000 0.00 0.00 45.02 3.16
2216 3409 9.437045 GAAACTGCAAAGATAAAAACCAAAATG 57.563 29.630 0.00 0.00 0.00 2.32
2217 3410 8.334632 CGAAACTGCAAAGATAAAAACCAAAAT 58.665 29.630 0.00 0.00 0.00 1.82
2218 3411 7.332182 ACGAAACTGCAAAGATAAAAACCAAAA 59.668 29.630 0.00 0.00 0.00 2.44
2219 3412 6.814146 ACGAAACTGCAAAGATAAAAACCAAA 59.186 30.769 0.00 0.00 0.00 3.28
2220 3413 6.334202 ACGAAACTGCAAAGATAAAAACCAA 58.666 32.000 0.00 0.00 0.00 3.67
2221 3414 5.897050 ACGAAACTGCAAAGATAAAAACCA 58.103 33.333 0.00 0.00 0.00 3.67
2222 3415 6.822073 AACGAAACTGCAAAGATAAAAACC 57.178 33.333 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.