>input_sequence_84755
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-----------------------------AT---------------GGCGGCGTGGAGCGAGAGCGAGAACGAGAGGTTC
GAGCGCGCGCTGGACACGTACGACCGTGACACGCCCGGCCGCTGGGACCGCGTCGCCGCCGCCGTGGGCGGCGGCAAGAC
GGCCGACGACGTCAGGCGCCACTACGACCGGCTCGTCGACGACCTCCGCCGCATCGACGCCGGCGGCGCCAACTCCAACG
GCGGAACTCATGCCACCGGCGGCAGCAGCAGCAACGGCGCGGGGAACAACGGCAGCAGAGGAGGGTCAGGGGGCAGCCGG
CGGCCCCAGACATAA-----------------------------------------------------------------
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-------------------------------------------
>chr4A_1_TraesCS4A01G320600
CTCCCAGGTGCAGGGCGCATGCGTCAGCACACTGACTTTG----ATATAATCGCCTTGTTTAGCCGATGCACACTA----
-----AGGAATCTATGTGCACATACATGGTCCTCGTACGTACATTATTCCTCAGAAGAAAGACATTATGGAGG-------
TTAGAAGGCAGATTAAGTTGTCGTTTCATGACTAGCTTATCAGTTTTGCTAAGTCTCGGTTGACTGAGACTTCATTATGT
TTCGGTCGTTGCTATATTCTTTTGATTTTGCATGGAGATTCGTACATATTTTTTCATTTCAGTTTTTTTTTCATTTCTTT
TTTCTTCAA-----GTCAAAGTCGATTGAGACCTAGCCACACCCCTAGTTCATGCCCTGGCTTTTAGATGCATATTGGGC
ACAAAGGCAGATTTGACAATGCTAATTAACCTACTTATATAAAATTGCTAGTGCTATTATTTTTGCCTCTGATGGATGGA
TGAGAATGGGA---GTGGAACCTAGCTATTTGGAGTATCCTCATCTATATATTAC-------------------------
--------------------------------------------------------------------------------
------------------------------------------TAGCAATGGGCCATCCATGCCACCAAATTTGGATATGG
TTGGCTAAGCTTATCTT----ATTAATTTCCATAAAGACAGAGGATCTAGATTCTGATTTATTAGATCCCCTATTATTGG
CAAAACC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------ATTGGTTTTCTCAGAATTTCTTGTGCCTTTAACTTTTGTTAGTCAACTGAAACCTTTTGATTTTGTGTGATAA
ACATATA------TACATGGGATGGGAATAAAATGCCATCCAGTAGTTTTGCTCGCCAATGCTAATCTAGGTAGGTAGCT
T-----------GATTCAATTCCTGCAATTTGCAACTAGATTAACATTGTGACATCGATCGATTACCTTTTGCATCGCAT
TTGCATTTGCATTTGGTTTAGTTAATTAATTTCCTACGGTCGAGCTAGCTAGTATAAAT---------------------
------------ATATGGAACACTTGGTTTGCAATGACACACACGTAGGCCAGTCGCAGAGACAGATTAAGAACACCCAT
CTGGCTAGCTCAGCTTAATCTGATCGGTCAT---------------GGCGGCGTGGAGCGAGAGCGAGAACGAGAGGTTC
GAGCGCGCGCTGGACACGTACGACCGTGACACGCCCGGCCGCTGGGACCGCGTCGCCGCCGCCGTGGGCGGCGGCAAGAC
GGCCGACGACGTCAGGCGCCACTACGACCGGCTCGTCGACGACCTCCGCCGCATCGACGCCGGCGGCGCCAACTCCAACG
GCGGAACTCATGCCACCGGCGGCAGCAGCAGCAACGGCGCGGGGAACAACGGCAGCAGAGGAGGGTCAGGGGGCAGCCGG
CGGCCCCAGACATAAATGGTAGTTGATGGAT-----GGATCGGATCATGCAAGGTGGTGGCCTGGTCGGCACAG--GAGG
ACACTCACATG-----AGCCCTATCCTAATCTAC-------ATCTGCATTACATACATACATGTAGCGTACGTGTATATG
TACACGTACGCACGTCATGCACATTGCTAGCGGGTACGTGCATGTA---TCTGTCACGTGTACGTATGTACTCCACTTAC
GTACCCGTATGCATGCATGTGTACGTGCAA--------GAGTGCAACACACTGTGCTGGCCTTTTTATTTGTTTGCGAAC
TACTCCCTCTGTAAACTAATATAAAAACATTTAAATCATTATTTTAGTATTCTAAACACTTTTATATTAGTTTACGGAGG
AAGTAACAGTGTGCTAGCTGGTTACCTACTCTGTGTGTATGTGTGCTGCCATGTACATACATACATGGTACGTCTACGTT
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-------TTGTACATGTGCTTGTAGATTGTAAATTAATCCATGCATGTTCTTCCTTGAAGAAAAAGATAATCCGTGTGCA
AGTCATTGGTACACGCTAATTAAGTGCTTCTTCTATAAACTAATATAAGATGTTTTAGATCACTAAAGTAGAGGGAGTAC
CATATTTCTT-CTTTTTCTGTGAAAATATTTCTTTACTCTTTTGGCTAG------------------------------G
AGTTACCACATTCATTCTTCATGAGCACCATGTCTTTCCTTATAATTATGACCTCCACGATTTTTGTACAGTGAAAGCCA
TCATAGCGACTTTTGTCTTTTTTTTTTTTTTGGTTTCTCGGTGGTCGAGCATGTGTGTAGAAAAGGCCTGCTGGATCATT
CGGCAACAAAGCTAGGACAGCCGGCCTGTTTCAATTGCTTTTTGTAGCCAGCCAGTGGCAAATCATATGTGCCGCTACGA
CGGCGTAGTCGGGGCTTCACACAAGGGCTCCCACCACCTGGGCCGGCCCATTTTGGTTTTTATCTTTGCAGTTTCGTTTT
TTTCTTCTCTACCATTTCCTTTTTTGTACATTTCAAGTTCATT
>chr5B_1
CTCCCAGGTGCAGGGCGCATGCGTCAGCGCACTGACTTTGATATATATAATCGCCTTGTTTAGCCGATGCACAATATATA
TTTGGAGGAATGTATGTGCACATACATGGTCCTCTCGA---------TCGTACGTACAAAGTTATTATGAAGC-------
TTAAAAGGCAGATTAAGTTGTCGTTTCATGTCTAGTTTATCAGT-TTGCTTAGTCCCGGTCGATCGGGACTTCGTTATGC
CTTAGTTGATGCTATATTCCTTTGATTTTGAATGGAGATACGTACAAAATTTTTCCTTTTAGTTTTTTTTCCTTTTTCTT
CTTATACTAGCTAGGTCTCAGTCCACTGAGAGCTAGCCACACCCCTAGTTTATGCCCTGGCCTTTAGATGCATATTGGGC
ACAAAGGCAGATTTGACAATGCTAATTAACCTACTTATATAAAATTGTGAGTGCTATTATTTTTGCCTCTGATGGATGGA
TGAGAATGGGAGTGGTGGAACCTAGCTCTTTGGAGTA-----------------C-------------------------
--------------------------------------------------------------------------------
------------------------------------------TAGCAATGGGCCATGCATGCCACCCAATTTGGACATGG
TTGGCTAAGCTTATTTT----ATTAATTTCCATAAAGACAGAGGATCTAGATTCTGATTTATTAGATCCTTTATTATTTG
CAAAACGACTTCCTCCGTTGCTAAATATAAGTCTTTTTAGAGATTTCACTATAGAGACTATGTTCAGATGTATATAGACG
TCTTTAGAGTATAGTTCACTAATTTTGCTCCGTATTTAGTTTATAGTGGAATCTCTTAAAAGACTTATATTTAGGAACGA
AGGGAATATTGGTTTTCTCGGAATTGATTGTGGCTTTAACTTTTGTTAGTCAACTGAAGCCTTTTGATTTTGAGTGATAA
ACATATA------TACATGGGATGGGAATAAAACGCCGTCCAATAGTTTTGCTCGCCAATGCTAATCTAGGTAGGTAGGT
AGCTCC------GATTCAATTCCTGCAATTTGCAACTAGATTAACATTGTGACATCGATCGATTGCCTTTTGCATCCCAT
TTGCATTTGCATTGTGTTTAGTTAATTGATTTCCTACGGTCGAGCTAGCTAGTATAAAT---------------------
------------ATATGGAACACTTGGTCTGCAATGACACACACGTACGCCAGTCGCAGAGACAGATTAAGAACATCCAT
CTGGCTAGCTCAGCTTAATCTGACCGGTCAT---------------GGCGGCGTGGAGCGAGAGCGAGAACGAGAGGTTC
GAGCGCGCGCTGGACACGTACGACCGCGACACGCCCGGCCGCTGGGACCGCGTCGCCGCCGCCGTCGGGGGCGGCAAGAC
GGCCGACGACGTCAGGCGCCACTACGACCGGCTCGTAGACGACCTCCGCCGCATCGAGGCCGGGGGCGCCAACTCCAACG
GCGGAACTCATGCCGCCGGCGGCAGCAGCAGCAACGGCGCGGGGAATAACGGCAGCAGAGGAGGGCCAGGGAGCAGCCGG
CGGCCCCAGACATAAATG-------ATGGGTGGATCGGATCGGATCATGCAAGGTGGTGGCCTGGTCGGCACAG--GACG
---CTGACATG-----ATCCCTATCCTATCTACGTCTTCTGCATTCATACATATACATGCATGTAACGTACGTGTATATG
TACACGTACGCACGTCATGCACATTGCTAGCGGGTACGTGCATGTA---TGCGTCACGTGTACGTACGT-----ACTTAC
GTACACGTATGCATGCATGTGTACGTGCAACGGTGCAAGAGTGCAACACAGTGTGCTGGCCCTTTTTTATTTATGTGC--
-------------------------------------------------------------------------------G
AACTGACAGTGTGCTAGCTTGTCAGTGACTGTGTGTGCGCGCGCTGTGCCATGCATGTACGTATGCCTACGTCTTTTTTT
TTTCTCGAATATGCACGAGTGTACATATCATATATTAAAGAAGGAAAGGCATAGATGCCTCCACCAGTCGATTACAAGCG
TGGCGATTGCTCACACATATGTACACACCACTCCACCTAGTGGGAACGTATCTGGTGCACCAAGGCAATTGGTGCCACCG
ATGCACCGGACCCTGTTGCACATTAAAAAATATTTAGAAAAATCCGCAAAAAGTTTGGTGTATCAACACAACATCAATGT
ATGTTGTCGCAAAAATTTAAATCAAAATTCAAAACAATGCTCAAGATACAAAAATGACAAATTTGACCTCAATGTGCTAA
TGGGCCAAAAATGAAGCCCAACTTGTGTTATGTACTATTCAGTGTCAAATTTGTTATTTTTGTATCTCGAGCAATGTTTT
AAATATTGATTTAAATTTTTGTGACAACGTACATTGATGTTGTATCAATGCACTAGGTTTTTTTTCGGATTTTTTCGAAC
ATTTTTGAATGTGCAACGGGCGACCGGTGCACCGGTAGCACAAATTGCCTCGGTGCACCAGATACATTCCCTCCACCTAG
TACACAAATACTACTACTCCCCACTAATCCACCTCGCTAAACCCGCAAACACGAAGTCAACATTTCCTTTCATAAGTCCT
GAACGCGCTCAAGTCCTTCCTTCCGCTTCTATTCTATGCATGAGCTGGTGAAGCGATGGCAGCTCTCCATCAAACACCAT
CTACGTCTTGTACGTGTGCTAGTAGATTGTAAATTAATCCATGCATGTGCTTCCTTTAAGAGAAATATAATCCGTGTGCA
AGTCATTCG----------------------------------------------TAGATCACTAAAATATAATTGGTAC
CATATTTTTTCCTTTTTCTGTGAAAATATTTCTTACTCCCTCCGTCCCATAAGAACGTTTTTGACACTACACTGACCGAG
AATTATCACATTCATTCTTTATGAGTACCATGTCTTTCCTTATAATTATGACCTCCATGATTTTTTGT-AGTGAAAGCCA
TCATGGCGACTTT-------------------------------------------------------------------
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-------------------------------------------
>chr5D_1
CTCCCAGGTGCAGGGCGCATGCGTCAGCGCACTGA----------TATAATCGCCTTGTTTAGCCGATGCACAATATC--
--TGGAGAAATCTATGCGGGCATACATGGTCCTCGTACGTACATTATTCCTTTGGAGAAAGTTATTATTATGGTGGTTAA
TTAAAAGGCAGATTAAGTTGTCGTTTCATGTCTAGTTTATTAG-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATGCCCTGGCCTTTAGATGCATATTGGGC
ACAAAGGCAGATTTGACCCTGCTAATTAGCCTACTTATATAAAATTGCGAGTGCTATTGTTTTTGCCCCTGGTGGATGGA
TGAGAATGGGAA---TGGAACCTAGCTATATGGAGTATCCTCGTCTATGTATTACTCCCTCGGTTCCTAAATATTTGTCT
TTTTAGAGATTTCAAATGGACTACCATATTTTAAAGTGTAGATTCACTCATTTTGCTCCGTATGTAGTCACTTGTTAAAA
TCTCTAGAAAGACAAATATTTAGGAACGGAGAGAGTACTTAGTAGCAATGGGCCATGCATGCCACCAAATTTGGACATGG
TTGGCTAAGCCTATCATGTTAATTAATTTTCAGAAAGATAGAGGATCTAGATTCTGATTACTAATTAGATGTACT-----
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------TATTGGGTTTCCCAGAATTTACTGTGCCTTTAACCTTTGGTAGTCAACTGAAGCATTTTGGTTTTGTGTAAAGA
TATATACTACCCCTACATGGGATGGGAATAAAACGCCGTCCAATAGTCTTGCTCGCCAATGCTAATCTAGGTAGGTAGCT
TAGCCACCTCCGGATTCAATTCCTGCAACTTGCAACTAGATTAACATTGTGACATCCATTATAGC---------------
--GCATTTGCATCTTGTTTAGTTAACTGATTT----------AGCTAGCTAGCTATTCCCTCCGTCCCATAATATATTAG
GAAGTACTATAAATATGGAGCACTTGGTTTGCAATGACACACACGCACGTA---CGCAGAGACAAATTCAAGAAA-----
-----TAGCTCAGCTTAATCTGATCGGTAGATCGACCGGTCATGGCGGCGCCGTGGAGCGAGAGCGAGAACGAGAGGTTT
GAGCGCGCGCTGGACACGTACGACCGCGACACGCCCGGCCGCTGGGACCGCGTCGCCGCCGCCGTCGGGGGCGGCAAGAC
GGCCGACGACGTCAGGCGCCACTACGACCGGCTCGTCGACGACCTCCGCCGCATCGAGGCCGG---CGCCAACTCCAATG
GCGGAACTCATGA---CGCCGGCAGCAGCAGCAACGGCGCGGGGAATAACGGAAGCAGAGGAGGGTCAGGGGGCAGCCGG
CGGCCCCAGACATAAATG-------ATGGAT-----GGATCGGATCATGCAAGGTGGTGGGCTGGTCGGCACAGACGACG
---CTGACATGAGTCTATCCTAATCCTATCTAGTACATCTGATCTGCATTACATACAAACGTACGT--------------
-------------------------------GGGTGCGTGCATGTACTATCTGTCACGTGTACGTACGT-----ACGTAC
GTACCTACATGCATGCATGTCTAC--------GTGCAAGAGTGCAACACACTGTGCTGGCCTTTTTATCTGTTTGCGAAC
TA------------------------------------------------------------------------------
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-------------------------------------------
>SNPs
----------------------------S--------------------------------------------S------
---------------------------------------------------SS-S------SS------S----------
---S--------------------------S----S--------S-----S----S----S--SS-S------S-----S
S-SS--S-S----------S----------S--------S------S-S------S---S----------S-S---SS--
S--S-S-S---------SS----S-S-----S------------------S----------S------------------
------------------------------------------------S-------------------------------
------------------------------------------S-----S-------------------------------
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--------------------------------------------------------S------------------S----
---------------------------------------------------------------------SS-------S-
------S-------------------------------------------------------------------------
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--------------------------S-------------------------------S---------------------
---------------------------------S---S----S-------------------------------------
----------------------------------------------------------------S-----------S---
--------------S------------S----------------------------------------------------
-----------------------------------------------S---------------------------S----
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--------------------------S--------------------------------------S--S-----------
---------------------------------------------------------S-----S----------------
--------------S-------------------------------S---------------------------------
------------------SSSSSSS-----------------------------------------------------S-
SSS--S-----------S----------SSSSSS-------------------------------S--------------
------------------------------------------------------------------S--SSSSS------
--------------------------------------------------------------------S-----------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
--S-S--------------S--S-SSS---S------SSS-S-SSS-------S-SS---S--SSSSSSSSSSS-SSS--
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-------------S------S---------------------------S-------S----S---S--------------
-------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S--S-SSSS----
-------S--------------------------SSSS-S-SS-S-SSS-------------------------------
-S---S-------------S-----S-------------------------------S-------SSSS-----------
----S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_371
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-------------------------------CCTAGCCACACCCCTAGTTC-----------------------------
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>reverse_3365
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----GTAGTCGGGGCTTCACACAA--------------------------------------------------------
-------------------------------------------
