Multiple sequence alignment - TraesCS4A01G317900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G317900 chr4A 100.000 2873 0 0 1 2873 607179300 607176428 0.000000e+00 5306.0
1 TraesCS4A01G317900 chr4A 90.947 486 32 6 1018 1491 607262047 607261562 0.000000e+00 643.0
2 TraesCS4A01G317900 chr4A 84.513 452 47 9 1429 1878 607235964 607235534 2.650000e-115 425.0
3 TraesCS4A01G317900 chr4A 85.657 251 36 0 1624 1874 607261564 607261314 6.100000e-67 265.0
4 TraesCS4A01G317900 chr5D 90.920 1630 82 27 589 2180 565660144 565658543 0.000000e+00 2130.0
5 TraesCS4A01G317900 chr5D 90.535 486 34 5 1018 1491 565703097 565702612 1.450000e-177 632.0
6 TraesCS4A01G317900 chr5D 90.625 416 26 7 2296 2704 565658527 565658118 9.060000e-150 540.0
7 TraesCS4A01G317900 chr5D 87.600 250 31 0 1625 1874 565702613 565702364 1.010000e-74 291.0
8 TraesCS4A01G317900 chr5B 90.827 1330 82 22 589 1893 707475548 707476862 0.000000e+00 1744.0
9 TraesCS4A01G317900 chr5B 100.000 584 0 0 1 584 198417181 198416598 0.000000e+00 1079.0
10 TraesCS4A01G317900 chr5B 92.637 421 30 1 1068 1488 707440063 707440482 3.170000e-169 604.0
11 TraesCS4A01G317900 chr5B 88.333 420 24 12 2279 2697 707477214 707477609 5.570000e-132 481.0
12 TraesCS4A01G317900 chr5B 86.909 275 24 6 1894 2164 707476938 707477204 6.020000e-77 298.0
13 TraesCS4A01G317900 chr5B 85.185 162 23 1 1333 1493 529988183 529988344 6.370000e-37 165.0
14 TraesCS4A01G317900 chr5B 83.333 162 26 1 1333 1493 529609311 529609472 6.410000e-32 148.0
15 TraesCS4A01G317900 chr5B 91.429 70 6 0 2200 2269 449753573 449753642 2.360000e-16 97.1
16 TraesCS4A01G317900 chr5B 81.443 97 10 1 2173 2269 546706725 546706637 3.970000e-09 73.1
17 TraesCS4A01G317900 chr5B 78.351 97 16 2 2173 2269 615781441 615781350 1.110000e-04 58.4
18 TraesCS4A01G317900 chrUn 97.935 581 9 1 1 581 331325504 331324927 0.000000e+00 1003.0
19 TraesCS4A01G317900 chrUn 97.590 581 11 1 1 581 331365336 331364759 0.000000e+00 992.0
20 TraesCS4A01G317900 chrUn 88.298 94 11 0 2177 2270 259667578 259667485 2.340000e-21 113.0
21 TraesCS4A01G317900 chr7B 97.590 581 11 1 1 581 725613019 725613596 0.000000e+00 992.0
22 TraesCS4A01G317900 chr7B 97.590 581 11 1 1 581 725647881 725648458 0.000000e+00 992.0
23 TraesCS4A01G317900 chr7B 97.253 546 14 1 1 545 23639012 23639557 0.000000e+00 924.0
24 TraesCS4A01G317900 chr7B 97.253 546 14 1 1 545 253688088 253687543 0.000000e+00 924.0
25 TraesCS4A01G317900 chr3B 95.000 580 21 2 1 580 22524633 22525204 0.000000e+00 904.0
26 TraesCS4A01G317900 chr3B 80.415 337 62 4 245 579 816812964 816812630 1.320000e-63 254.0
27 TraesCS4A01G317900 chr3B 87.143 70 9 0 2200 2269 700365693 700365762 2.370000e-11 80.5
28 TraesCS4A01G317900 chr1A 90.727 399 36 1 1 398 35545254 35544856 5.450000e-147 531.0
29 TraesCS4A01G317900 chr1A 82.828 99 9 4 2173 2269 583300814 583300906 6.600000e-12 82.4
30 TraesCS4A01G317900 chr7D 85.437 103 7 1 2167 2269 523077346 523077252 1.820000e-17 100.0
31 TraesCS4A01G317900 chr7D 82.178 101 10 1 2169 2269 510397850 510397758 2.370000e-11 80.5
32 TraesCS4A01G317900 chr7D 100.000 28 0 0 2592 2619 174137820 174137847 5.000000e-03 52.8
33 TraesCS4A01G317900 chr1D 91.429 70 6 0 2200 2269 30241556 30241487 2.360000e-16 97.1
34 TraesCS4A01G317900 chr1D 82.075 106 8 4 2168 2272 415405150 415405055 2.370000e-11 80.5
35 TraesCS4A01G317900 chr2B 90.000 70 7 0 2200 2269 705885938 705885869 1.100000e-14 91.6
36 TraesCS4A01G317900 chr4B 89.855 69 7 0 2202 2270 662002366 662002298 3.940000e-14 89.8
37 TraesCS4A01G317900 chr3D 88.000 75 9 0 2200 2274 157035670 157035744 3.940000e-14 89.8
38 TraesCS4A01G317900 chr2A 88.732 71 8 0 2200 2270 16150311 16150381 1.420000e-13 87.9
39 TraesCS4A01G317900 chr6B 94.737 38 1 1 2174 2210 594860718 594860755 1.110000e-04 58.4
40 TraesCS4A01G317900 chr1B 92.308 39 1 2 2162 2200 308908378 308908342 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G317900 chr4A 607176428 607179300 2872 True 5306.0 5306 100.000000 1 2873 1 chr4A.!!$R1 2872
1 TraesCS4A01G317900 chr4A 607261314 607262047 733 True 454.0 643 88.302000 1018 1874 2 chr4A.!!$R3 856
2 TraesCS4A01G317900 chr5D 565658118 565660144 2026 True 1335.0 2130 90.772500 589 2704 2 chr5D.!!$R1 2115
3 TraesCS4A01G317900 chr5D 565702364 565703097 733 True 461.5 632 89.067500 1018 1874 2 chr5D.!!$R2 856
4 TraesCS4A01G317900 chr5B 198416598 198417181 583 True 1079.0 1079 100.000000 1 584 1 chr5B.!!$R1 583
5 TraesCS4A01G317900 chr5B 707475548 707477609 2061 False 841.0 1744 88.689667 589 2697 3 chr5B.!!$F5 2108
6 TraesCS4A01G317900 chrUn 331324927 331325504 577 True 1003.0 1003 97.935000 1 581 1 chrUn.!!$R2 580
7 TraesCS4A01G317900 chrUn 331364759 331365336 577 True 992.0 992 97.590000 1 581 1 chrUn.!!$R3 580
8 TraesCS4A01G317900 chr7B 725613019 725613596 577 False 992.0 992 97.590000 1 581 1 chr7B.!!$F2 580
9 TraesCS4A01G317900 chr7B 725647881 725648458 577 False 992.0 992 97.590000 1 581 1 chr7B.!!$F3 580
10 TraesCS4A01G317900 chr7B 23639012 23639557 545 False 924.0 924 97.253000 1 545 1 chr7B.!!$F1 544
11 TraesCS4A01G317900 chr7B 253687543 253688088 545 True 924.0 924 97.253000 1 545 1 chr7B.!!$R1 544
12 TraesCS4A01G317900 chr3B 22524633 22525204 571 False 904.0 904 95.000000 1 580 1 chr3B.!!$F1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
874 882 0.24691 GGAGGAGGAAGACGACCAAC 59.753 60.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2251 2375 0.178955 TGTACTCCCTCCGTTCCACA 60.179 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
584 585 6.824196 GGAAAGGAGAAGGAACGAGAATTATT 59.176 38.462 0.00 0.00 0.00 1.40
585 586 7.011576 GGAAAGGAGAAGGAACGAGAATTATTC 59.988 40.741 0.00 0.00 0.00 1.75
586 587 5.593010 AGGAGAAGGAACGAGAATTATTCG 58.407 41.667 9.55 9.55 43.38 3.34
587 588 5.360144 AGGAGAAGGAACGAGAATTATTCGA 59.640 40.000 16.14 0.00 40.36 3.71
623 624 2.851263 ATTGGTTAACGGACAGCAGA 57.149 45.000 0.00 0.00 0.00 4.26
740 742 2.829741 AAGGCAGAGTGAGACAAGAC 57.170 50.000 0.00 0.00 0.00 3.01
851 856 7.617723 AGGTTTATTATACCAACATCCAAGCAA 59.382 33.333 6.15 0.00 38.16 3.91
874 882 0.246910 GGAGGAGGAAGACGACCAAC 59.753 60.000 0.00 0.00 0.00 3.77
926 934 2.498644 AGCTACCTTTTGCTTCCCTC 57.501 50.000 0.00 0.00 35.86 4.30
1185 1223 3.774528 CTCGGGCAGCAGCTGGTA 61.775 66.667 24.13 1.05 41.70 3.25
1215 1253 3.434319 GACCTCGTGTACGGCGGA 61.434 66.667 13.24 0.00 40.29 5.54
1496 1534 1.005394 ACGACAAGCCGGTTAGTGG 60.005 57.895 1.90 2.98 0.00 4.00
1533 1571 5.584649 CCCTATGAACTCGCAAAGAACATAA 59.415 40.000 0.00 0.00 31.72 1.90
1540 1578 7.803189 TGAACTCGCAAAGAACATAATTTTCTC 59.197 33.333 0.00 0.00 31.87 2.87
1613 1655 6.573664 TTGATCGAGGTGAATGAATTTTGT 57.426 33.333 0.00 0.00 0.00 2.83
1621 1663 5.754890 AGGTGAATGAATTTTGTTGAACTGC 59.245 36.000 0.00 0.00 0.00 4.40
2010 2131 9.485206 GAACTTTTTGTGGACATAGACTACTTA 57.515 33.333 0.00 0.00 0.00 2.24
2056 2180 8.648557 TTACTCTGTGACTTGTATATGAATGC 57.351 34.615 0.00 0.00 0.00 3.56
2088 2212 1.615392 CCTGCTTTGGCTTTTGCTAGT 59.385 47.619 0.00 0.00 46.54 2.57
2089 2213 2.819608 CCTGCTTTGGCTTTTGCTAGTA 59.180 45.455 0.00 0.00 46.54 1.82
2090 2214 3.366374 CCTGCTTTGGCTTTTGCTAGTAC 60.366 47.826 0.00 0.00 46.54 2.73
2125 2249 2.323999 TTGTTGCCATTTCTGGGGAT 57.676 45.000 0.00 0.00 43.36 3.85
2141 2265 3.462954 TGGGGATAGATGCTGATTTCCAA 59.537 43.478 0.00 0.00 0.00 3.53
2187 2311 2.565841 GTACGTATGTACTCCCTCCGT 58.434 52.381 16.51 0.00 46.07 4.69
2188 2312 1.673168 ACGTATGTACTCCCTCCGTC 58.327 55.000 0.00 0.00 0.00 4.79
2189 2313 0.950116 CGTATGTACTCCCTCCGTCC 59.050 60.000 0.00 0.00 0.00 4.79
2190 2314 1.326328 GTATGTACTCCCTCCGTCCC 58.674 60.000 0.00 0.00 0.00 4.46
2191 2315 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
2192 2316 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
2193 2317 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
2194 2318 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
2195 2319 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
2196 2320 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
2197 2321 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2198 2322 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2199 2323 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2200 2324 5.600749 ACTCCCTCCGTCCCATAATATAAT 58.399 41.667 0.00 0.00 0.00 1.28
2201 2325 6.748969 ACTCCCTCCGTCCCATAATATAATA 58.251 40.000 0.00 0.00 0.00 0.98
2202 2326 7.194050 ACTCCCTCCGTCCCATAATATAATAA 58.806 38.462 0.00 0.00 0.00 1.40
2203 2327 7.849904 ACTCCCTCCGTCCCATAATATAATAAT 59.150 37.037 0.00 0.00 0.00 1.28
2204 2328 9.375974 CTCCCTCCGTCCCATAATATAATAATA 57.624 37.037 0.00 0.00 0.00 0.98
2205 2329 9.907819 TCCCTCCGTCCCATAATATAATAATAT 57.092 33.333 0.00 0.00 0.00 1.28
2263 2387 5.986004 GTTCTTATATTGTGGAACGGAGG 57.014 43.478 0.00 0.00 42.39 4.30
2264 2388 4.682778 TCTTATATTGTGGAACGGAGGG 57.317 45.455 0.00 0.00 42.39 4.30
2265 2389 4.291792 TCTTATATTGTGGAACGGAGGGA 58.708 43.478 0.00 0.00 42.39 4.20
2266 2390 4.344102 TCTTATATTGTGGAACGGAGGGAG 59.656 45.833 0.00 0.00 42.39 4.30
2267 2391 1.946984 TATTGTGGAACGGAGGGAGT 58.053 50.000 0.00 0.00 42.39 3.85
2305 2429 3.194062 TGCATGAATGATTGCATTGCAG 58.806 40.909 11.76 0.00 44.47 4.41
2313 2437 7.200455 TGAATGATTGCATTGCAGAAAGATAG 58.800 34.615 11.76 0.00 44.47 2.08
2327 2451 6.098679 CAGAAAGATAGGATCGATGATGGAC 58.901 44.000 0.54 0.00 0.00 4.02
2367 2491 3.521937 AGTCGGAAAAGGTGGATCCATTA 59.478 43.478 19.62 0.00 39.02 1.90
2368 2492 3.877508 GTCGGAAAAGGTGGATCCATTAG 59.122 47.826 19.62 6.13 39.02 1.73
2429 2553 0.533978 TTGCAGCTTTAGCCGTGTGA 60.534 50.000 0.00 0.00 43.38 3.58
2481 2605 0.516877 CAATTCACGCACGTGGATGT 59.483 50.000 21.73 8.04 43.04 3.06
2482 2606 1.729517 CAATTCACGCACGTGGATGTA 59.270 47.619 21.73 0.39 43.04 2.29
2483 2607 1.355971 ATTCACGCACGTGGATGTAC 58.644 50.000 21.73 0.00 42.32 2.90
2484 2608 0.668096 TTCACGCACGTGGATGTACC 60.668 55.000 21.73 0.00 45.43 3.34
2485 2609 4.555209 ATTCACGCACGTGGATGTACCA 62.555 50.000 21.73 0.00 42.32 3.25
2551 2675 3.118261 GGTTGTGGAAGATAGGATGCAGA 60.118 47.826 0.00 0.00 0.00 4.26
2601 2725 1.482182 TGTCCAGTCCAATCTGATCCG 59.518 52.381 0.00 0.00 37.61 4.18
2624 2748 4.171878 TCCAAGTATCCAACCAACACAA 57.828 40.909 0.00 0.00 0.00 3.33
2625 2749 4.735369 TCCAAGTATCCAACCAACACAAT 58.265 39.130 0.00 0.00 0.00 2.71
2626 2750 5.882040 TCCAAGTATCCAACCAACACAATA 58.118 37.500 0.00 0.00 0.00 1.90
2627 2751 5.943416 TCCAAGTATCCAACCAACACAATAG 59.057 40.000 0.00 0.00 0.00 1.73
2628 2752 5.943416 CCAAGTATCCAACCAACACAATAGA 59.057 40.000 0.00 0.00 0.00 1.98
2629 2753 6.128007 CCAAGTATCCAACCAACACAATAGAC 60.128 42.308 0.00 0.00 0.00 2.59
2630 2754 6.121776 AGTATCCAACCAACACAATAGACA 57.878 37.500 0.00 0.00 0.00 3.41
2634 2758 3.149196 CAACCAACACAATAGACAGGCT 58.851 45.455 0.00 0.00 0.00 4.58
2658 2795 1.466167 CGTGGAAAGAATGGCTCACAG 59.534 52.381 0.00 0.00 0.00 3.66
2676 2813 2.029470 ACAGTGCTCACTCTACTCAAGC 60.029 50.000 0.00 0.00 40.20 4.01
2693 2830 2.629617 CAAGCCACCCTCACAATTCTTT 59.370 45.455 0.00 0.00 0.00 2.52
2698 2835 4.809673 CCACCCTCACAATTCTTTTTAGC 58.190 43.478 0.00 0.00 0.00 3.09
2700 2837 3.832490 ACCCTCACAATTCTTTTTAGCCC 59.168 43.478 0.00 0.00 0.00 5.19
2702 2839 4.089361 CCTCACAATTCTTTTTAGCCCCT 58.911 43.478 0.00 0.00 0.00 4.79
2703 2840 4.158579 CCTCACAATTCTTTTTAGCCCCTC 59.841 45.833 0.00 0.00 0.00 4.30
2705 2842 3.089284 ACAATTCTTTTTAGCCCCTCCG 58.911 45.455 0.00 0.00 0.00 4.63
2706 2843 3.245122 ACAATTCTTTTTAGCCCCTCCGA 60.245 43.478 0.00 0.00 0.00 4.55
2707 2844 3.953542 ATTCTTTTTAGCCCCTCCGAT 57.046 42.857 0.00 0.00 0.00 4.18
2708 2845 3.277142 TTCTTTTTAGCCCCTCCGATC 57.723 47.619 0.00 0.00 0.00 3.69
2709 2846 1.489230 TCTTTTTAGCCCCTCCGATCC 59.511 52.381 0.00 0.00 0.00 3.36
2710 2847 1.211949 CTTTTTAGCCCCTCCGATCCA 59.788 52.381 0.00 0.00 0.00 3.41
2711 2848 1.518367 TTTTAGCCCCTCCGATCCAT 58.482 50.000 0.00 0.00 0.00 3.41
2712 2849 2.409064 TTTAGCCCCTCCGATCCATA 57.591 50.000 0.00 0.00 0.00 2.74
2713 2850 2.642171 TTAGCCCCTCCGATCCATAT 57.358 50.000 0.00 0.00 0.00 1.78
2714 2851 2.642171 TAGCCCCTCCGATCCATATT 57.358 50.000 0.00 0.00 0.00 1.28
2715 2852 2.642171 AGCCCCTCCGATCCATATTA 57.358 50.000 0.00 0.00 0.00 0.98
2716 2853 2.915869 AGCCCCTCCGATCCATATTAA 58.084 47.619 0.00 0.00 0.00 1.40
2717 2854 3.464828 AGCCCCTCCGATCCATATTAAT 58.535 45.455 0.00 0.00 0.00 1.40
2718 2855 3.852578 AGCCCCTCCGATCCATATTAATT 59.147 43.478 0.00 0.00 0.00 1.40
2719 2856 3.947834 GCCCCTCCGATCCATATTAATTG 59.052 47.826 0.00 0.00 0.00 2.32
2720 2857 4.567747 GCCCCTCCGATCCATATTAATTGT 60.568 45.833 0.00 0.00 0.00 2.71
2721 2858 5.186198 CCCCTCCGATCCATATTAATTGTC 58.814 45.833 0.00 0.00 0.00 3.18
2722 2859 5.280470 CCCCTCCGATCCATATTAATTGTCA 60.280 44.000 0.00 0.00 0.00 3.58
2723 2860 5.643777 CCCTCCGATCCATATTAATTGTCAC 59.356 44.000 0.00 0.00 0.00 3.67
2724 2861 5.643777 CCTCCGATCCATATTAATTGTCACC 59.356 44.000 0.00 0.00 0.00 4.02
2725 2862 5.234752 TCCGATCCATATTAATTGTCACCG 58.765 41.667 0.00 0.00 0.00 4.94
2726 2863 4.391830 CCGATCCATATTAATTGTCACCGG 59.608 45.833 0.00 0.00 0.00 5.28
2727 2864 4.994852 CGATCCATATTAATTGTCACCGGT 59.005 41.667 0.00 0.00 0.00 5.28
2728 2865 5.468746 CGATCCATATTAATTGTCACCGGTT 59.531 40.000 2.97 0.00 0.00 4.44
2729 2866 6.017440 CGATCCATATTAATTGTCACCGGTTT 60.017 38.462 2.97 0.00 0.00 3.27
2730 2867 7.171848 CGATCCATATTAATTGTCACCGGTTTA 59.828 37.037 2.97 0.00 0.00 2.01
2731 2868 7.795482 TCCATATTAATTGTCACCGGTTTAG 57.205 36.000 2.97 0.00 0.00 1.85
2732 2869 6.261381 TCCATATTAATTGTCACCGGTTTAGC 59.739 38.462 2.97 0.00 0.00 3.09
2733 2870 6.038825 CCATATTAATTGTCACCGGTTTAGCA 59.961 38.462 2.97 0.00 0.00 3.49
2734 2871 4.752661 TTAATTGTCACCGGTTTAGCAC 57.247 40.909 2.97 0.00 0.00 4.40
2735 2872 1.530323 ATTGTCACCGGTTTAGCACC 58.470 50.000 2.97 0.00 43.16 5.01
2750 2887 7.033185 GGTTTAGCACCAAGTTGTTAATATGG 58.967 38.462 1.45 0.00 46.42 2.74
2751 2888 7.094118 GGTTTAGCACCAAGTTGTTAATATGGA 60.094 37.037 1.45 0.00 46.42 3.41
2752 2889 8.466798 GTTTAGCACCAAGTTGTTAATATGGAT 58.533 33.333 1.45 0.00 35.16 3.41
2753 2890 6.699575 AGCACCAAGTTGTTAATATGGATC 57.300 37.500 1.45 0.00 35.16 3.36
2754 2891 6.186957 AGCACCAAGTTGTTAATATGGATCA 58.813 36.000 1.45 0.00 35.16 2.92
2755 2892 6.835488 AGCACCAAGTTGTTAATATGGATCAT 59.165 34.615 1.45 0.00 35.16 2.45
2756 2893 7.998383 AGCACCAAGTTGTTAATATGGATCATA 59.002 33.333 1.45 0.00 35.16 2.15
2757 2894 8.796475 GCACCAAGTTGTTAATATGGATCATAT 58.204 33.333 1.45 0.00 38.52 1.78
2759 2896 9.300681 ACCAAGTTGTTAATATGGATCATATGG 57.699 33.333 2.13 0.00 37.17 2.74
2760 2897 9.519191 CCAAGTTGTTAATATGGATCATATGGA 57.481 33.333 2.13 0.00 37.17 3.41
2774 2911 7.202016 GATCATATGGATCGGAGAGAGTATC 57.798 44.000 2.13 0.00 42.81 2.24
2775 2912 6.067217 TCATATGGATCGGAGAGAGTATCA 57.933 41.667 2.13 0.00 43.63 2.15
2776 2913 6.118852 TCATATGGATCGGAGAGAGTATCAG 58.881 44.000 2.13 0.00 43.63 2.90
2777 2914 3.866703 TGGATCGGAGAGAGTATCAGT 57.133 47.619 0.00 0.00 43.63 3.41
2778 2915 4.171878 TGGATCGGAGAGAGTATCAGTT 57.828 45.455 0.00 0.00 43.63 3.16
2779 2916 5.306114 TGGATCGGAGAGAGTATCAGTTA 57.694 43.478 0.00 0.00 43.63 2.24
2780 2917 5.882040 TGGATCGGAGAGAGTATCAGTTAT 58.118 41.667 0.00 0.00 43.63 1.89
2781 2918 5.941058 TGGATCGGAGAGAGTATCAGTTATC 59.059 44.000 0.00 0.00 43.63 1.75
2782 2919 5.355910 GGATCGGAGAGAGTATCAGTTATCC 59.644 48.000 0.00 0.00 43.63 2.59
2783 2920 5.306114 TCGGAGAGAGTATCAGTTATCCA 57.694 43.478 0.00 0.00 37.82 3.41
2784 2921 5.882040 TCGGAGAGAGTATCAGTTATCCAT 58.118 41.667 0.00 0.00 37.82 3.41
2785 2922 5.707764 TCGGAGAGAGTATCAGTTATCCATG 59.292 44.000 0.00 0.00 37.82 3.66
2786 2923 5.475220 CGGAGAGAGTATCAGTTATCCATGT 59.525 44.000 0.00 0.00 37.82 3.21
2787 2924 6.655425 CGGAGAGAGTATCAGTTATCCATGTA 59.345 42.308 0.00 0.00 37.82 2.29
2788 2925 7.338196 CGGAGAGAGTATCAGTTATCCATGTAT 59.662 40.741 0.00 0.00 37.82 2.29
2789 2926 8.682710 GGAGAGAGTATCAGTTATCCATGTATC 58.317 40.741 0.00 0.00 37.82 2.24
2790 2927 8.588290 AGAGAGTATCAGTTATCCATGTATCC 57.412 38.462 0.00 0.00 37.82 2.59
2791 2928 8.397957 AGAGAGTATCAGTTATCCATGTATCCT 58.602 37.037 0.00 0.00 37.82 3.24
2792 2929 8.588290 AGAGTATCAGTTATCCATGTATCCTC 57.412 38.462 0.00 0.00 37.82 3.71
2793 2930 8.397957 AGAGTATCAGTTATCCATGTATCCTCT 58.602 37.037 0.00 0.00 37.82 3.69
2794 2931 8.588290 AGTATCAGTTATCCATGTATCCTCTC 57.412 38.462 0.00 0.00 0.00 3.20
2795 2932 6.865834 ATCAGTTATCCATGTATCCTCTCC 57.134 41.667 0.00 0.00 0.00 3.71
2796 2933 5.970289 TCAGTTATCCATGTATCCTCTCCT 58.030 41.667 0.00 0.00 0.00 3.69
2797 2934 7.103745 TCAGTTATCCATGTATCCTCTCCTA 57.896 40.000 0.00 0.00 0.00 2.94
2798 2935 7.535738 TCAGTTATCCATGTATCCTCTCCTAA 58.464 38.462 0.00 0.00 0.00 2.69
2799 2936 8.180165 TCAGTTATCCATGTATCCTCTCCTAAT 58.820 37.037 0.00 0.00 0.00 1.73
2800 2937 9.480861 CAGTTATCCATGTATCCTCTCCTAATA 57.519 37.037 0.00 0.00 0.00 0.98
2842 2979 6.878317 TCAGACACTGAATTATTGGTCTAGG 58.122 40.000 0.00 0.00 37.57 3.02
2843 2980 6.667848 TCAGACACTGAATTATTGGTCTAGGA 59.332 38.462 0.00 0.00 37.57 2.94
2844 2981 7.180229 TCAGACACTGAATTATTGGTCTAGGAA 59.820 37.037 0.00 0.00 37.57 3.36
2845 2982 7.824289 CAGACACTGAATTATTGGTCTAGGAAA 59.176 37.037 0.00 0.00 34.13 3.13
2846 2983 7.824779 AGACACTGAATTATTGGTCTAGGAAAC 59.175 37.037 0.00 0.00 34.13 2.78
2847 2984 7.458397 ACACTGAATTATTGGTCTAGGAAACA 58.542 34.615 0.00 0.00 0.00 2.83
2848 2985 8.109634 ACACTGAATTATTGGTCTAGGAAACAT 58.890 33.333 0.00 0.00 0.00 2.71
2849 2986 9.613428 CACTGAATTATTGGTCTAGGAAACATA 57.387 33.333 0.00 0.00 0.00 2.29
2858 2995 8.575649 TTGGTCTAGGAAACATAATTTTCTCC 57.424 34.615 0.00 0.00 36.02 3.71
2859 2996 7.928873 TGGTCTAGGAAACATAATTTTCTCCT 58.071 34.615 0.00 0.00 36.02 3.69
2860 2997 7.829211 TGGTCTAGGAAACATAATTTTCTCCTG 59.171 37.037 0.00 0.00 36.02 3.86
2861 2998 7.201741 GGTCTAGGAAACATAATTTTCTCCTGC 60.202 40.741 0.00 0.00 36.02 4.85
2862 2999 5.567138 AGGAAACATAATTTTCTCCTGCG 57.433 39.130 0.00 0.00 36.02 5.18
2863 3000 5.253330 AGGAAACATAATTTTCTCCTGCGA 58.747 37.500 0.00 0.00 36.02 5.10
2864 3001 5.710099 AGGAAACATAATTTTCTCCTGCGAA 59.290 36.000 0.00 0.00 36.02 4.70
2865 3002 6.030228 GGAAACATAATTTTCTCCTGCGAAG 58.970 40.000 0.00 0.00 36.02 3.79
2866 3003 6.128007 GGAAACATAATTTTCTCCTGCGAAGA 60.128 38.462 0.00 0.00 36.02 2.87
2867 3004 7.396540 AAACATAATTTTCTCCTGCGAAGAT 57.603 32.000 0.00 0.00 0.00 2.40
2868 3005 6.369059 ACATAATTTTCTCCTGCGAAGATG 57.631 37.500 0.00 0.00 0.00 2.90
2869 3006 6.115446 ACATAATTTTCTCCTGCGAAGATGA 58.885 36.000 0.00 0.00 0.00 2.92
2870 3007 6.259608 ACATAATTTTCTCCTGCGAAGATGAG 59.740 38.462 0.00 0.00 0.00 2.90
2871 3008 3.961480 TTTTCTCCTGCGAAGATGAGA 57.039 42.857 0.00 0.00 32.28 3.27
2872 3009 3.961480 TTTCTCCTGCGAAGATGAGAA 57.039 42.857 7.76 7.76 40.92 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
652 654 9.021807 AGCTAGTTCAGAATTAGTACTACAACA 57.978 33.333 12.86 0.00 0.00 3.33
658 660 9.280174 CTAGCTAGCTAGTTCAGAATTAGTACT 57.720 37.037 34.41 0.00 40.68 2.73
730 732 2.027745 GGCAATCTCCTGTCTTGTCTCA 60.028 50.000 0.00 0.00 0.00 3.27
740 742 3.117963 AGAGGATTCTTGGCAATCTCCTG 60.118 47.826 22.57 3.35 33.36 3.86
809 814 4.980702 CTGCCTGCCAGCCCAACA 62.981 66.667 0.00 0.00 34.21 3.33
851 856 1.064537 GGTCGTCTTCCTCCTCCTAGT 60.065 57.143 0.00 0.00 0.00 2.57
874 882 5.008811 GTGCGTATATATAGGCTGGTCTAGG 59.991 48.000 28.34 0.88 42.75 3.02
926 934 3.480133 CTAGGTGGGCGGAAGGGG 61.480 72.222 0.00 0.00 0.00 4.79
985 1005 0.824109 TCCATCGATCGCCTTGACTT 59.176 50.000 11.09 0.00 0.00 3.01
1049 1072 1.643868 CGGCGCTGTCTTTGGCATAA 61.644 55.000 8.45 0.00 0.00 1.90
1075 1101 3.016474 GCGACGGCAGCTTCTTGTC 62.016 63.158 0.00 0.00 39.62 3.18
1107 1145 2.320587 GCTCCCACAGAACACGCAG 61.321 63.158 0.00 0.00 0.00 5.18
1215 1253 3.005539 ATGAGACCCACGCTGCCT 61.006 61.111 0.00 0.00 0.00 4.75
1496 1534 0.179000 CATAGGGTGAGGTGTGAGGC 59.821 60.000 0.00 0.00 0.00 4.70
1501 1539 1.825474 CGAGTTCATAGGGTGAGGTGT 59.175 52.381 0.00 0.00 38.29 4.16
1549 1587 8.127327 CCAACAAAAATATCACAAATTTGCACA 58.873 29.630 18.12 2.53 35.05 4.57
1565 1603 8.735692 AACTCATCACAAAATCCAACAAAAAT 57.264 26.923 0.00 0.00 0.00 1.82
1566 1605 8.449397 CAAACTCATCACAAAATCCAACAAAAA 58.551 29.630 0.00 0.00 0.00 1.94
1613 1655 1.133513 ACAATCCCACCTGCAGTTCAA 60.134 47.619 13.81 0.00 0.00 2.69
1621 1663 1.266718 CACGTTCAACAATCCCACCTG 59.733 52.381 0.00 0.00 0.00 4.00
1717 1759 2.586079 CGCCGCCACGATGATCTT 60.586 61.111 0.00 0.00 34.06 2.40
1884 1927 8.630054 ATCTTAATTGTGTAGTTTACAAGGCA 57.370 30.769 0.00 0.00 40.92 4.75
1954 2075 3.792956 CAGTATGAATACGCGTACGGTTT 59.207 43.478 23.19 12.10 41.44 3.27
2056 2180 0.381801 AAAGCAGGCAAGAACACACG 59.618 50.000 0.00 0.00 0.00 4.49
2080 2204 7.655521 AGATACCACATACTGTACTAGCAAA 57.344 36.000 0.00 0.00 0.00 3.68
2081 2205 7.655521 AAGATACCACATACTGTACTAGCAA 57.344 36.000 0.00 0.00 0.00 3.91
2082 2206 7.655521 AAAGATACCACATACTGTACTAGCA 57.344 36.000 0.00 0.00 0.00 3.49
2083 2207 7.980099 ACAAAAGATACCACATACTGTACTAGC 59.020 37.037 0.00 0.00 0.00 3.42
2084 2208 9.871238 AACAAAAGATACCACATACTGTACTAG 57.129 33.333 0.00 0.00 0.00 2.57
2085 2209 9.647797 CAACAAAAGATACCACATACTGTACTA 57.352 33.333 0.00 0.00 0.00 1.82
2086 2210 7.119262 GCAACAAAAGATACCACATACTGTACT 59.881 37.037 0.00 0.00 0.00 2.73
2088 2212 6.373216 GGCAACAAAAGATACCACATACTGTA 59.627 38.462 0.00 0.00 0.00 2.74
2089 2213 5.183140 GGCAACAAAAGATACCACATACTGT 59.817 40.000 0.00 0.00 0.00 3.55
2090 2214 5.640732 GGCAACAAAAGATACCACATACTG 58.359 41.667 0.00 0.00 0.00 2.74
2111 2235 2.165998 GCATCTATCCCCAGAAATGGC 58.834 52.381 0.00 0.00 0.00 4.40
2125 2249 4.217510 CCCCAATTGGAAATCAGCATCTA 58.782 43.478 26.60 0.00 37.39 1.98
2141 2265 0.835971 GGTTGCCAAGAACCCCCAAT 60.836 55.000 0.00 0.00 39.74 3.16
2241 2365 4.814771 CCCTCCGTTCCACAATATAAGAAC 59.185 45.833 0.00 0.00 36.19 3.01
2242 2366 4.717778 TCCCTCCGTTCCACAATATAAGAA 59.282 41.667 0.00 0.00 0.00 2.52
2243 2367 4.291792 TCCCTCCGTTCCACAATATAAGA 58.708 43.478 0.00 0.00 0.00 2.10
2244 2368 4.101119 ACTCCCTCCGTTCCACAATATAAG 59.899 45.833 0.00 0.00 0.00 1.73
2245 2369 4.035112 ACTCCCTCCGTTCCACAATATAA 58.965 43.478 0.00 0.00 0.00 0.98
2246 2370 3.649843 ACTCCCTCCGTTCCACAATATA 58.350 45.455 0.00 0.00 0.00 0.86
2247 2371 2.478292 ACTCCCTCCGTTCCACAATAT 58.522 47.619 0.00 0.00 0.00 1.28
2248 2372 1.946984 ACTCCCTCCGTTCCACAATA 58.053 50.000 0.00 0.00 0.00 1.90
2249 2373 1.553704 GTACTCCCTCCGTTCCACAAT 59.446 52.381 0.00 0.00 0.00 2.71
2250 2374 0.971386 GTACTCCCTCCGTTCCACAA 59.029 55.000 0.00 0.00 0.00 3.33
2251 2375 0.178955 TGTACTCCCTCCGTTCCACA 60.179 55.000 0.00 0.00 0.00 4.17
2252 2376 0.971386 TTGTACTCCCTCCGTTCCAC 59.029 55.000 0.00 0.00 0.00 4.02
2253 2377 0.971386 GTTGTACTCCCTCCGTTCCA 59.029 55.000 0.00 0.00 0.00 3.53
2254 2378 0.971386 TGTTGTACTCCCTCCGTTCC 59.029 55.000 0.00 0.00 0.00 3.62
2255 2379 1.342174 TGTGTTGTACTCCCTCCGTTC 59.658 52.381 0.00 0.00 0.00 3.95
2256 2380 1.416243 TGTGTTGTACTCCCTCCGTT 58.584 50.000 0.00 0.00 0.00 4.44
2257 2381 1.640917 ATGTGTTGTACTCCCTCCGT 58.359 50.000 0.00 0.00 0.00 4.69
2258 2382 2.762535 AATGTGTTGTACTCCCTCCG 57.237 50.000 0.00 0.00 0.00 4.63
2259 2383 4.876107 CACATAATGTGTTGTACTCCCTCC 59.124 45.833 0.00 0.00 43.08 4.30
2305 2429 5.098893 CGTCCATCATCGATCCTATCTTTC 58.901 45.833 0.00 0.00 0.00 2.62
2313 2437 0.946221 GCCACGTCCATCATCGATCC 60.946 60.000 0.00 0.00 0.00 3.36
2367 2491 5.610132 AGACAGGGATATGAATGAATGACCT 59.390 40.000 0.00 0.00 0.00 3.85
2368 2492 5.874093 AGACAGGGATATGAATGAATGACC 58.126 41.667 0.00 0.00 0.00 4.02
2481 2605 3.632080 CTGCCCGGTGGTGTGGTA 61.632 66.667 0.00 0.00 0.00 3.25
2485 2609 4.514585 TTTGCTGCCCGGTGGTGT 62.515 61.111 0.00 0.00 0.00 4.16
2571 2695 1.271001 TGGACTGGACAGCACATGAAG 60.271 52.381 0.00 0.00 0.00 3.02
2601 2725 4.331968 TGTGTTGGTTGGATACTTGGATC 58.668 43.478 0.00 0.00 37.61 3.36
2624 2748 2.730934 TCCACGTCTAGCCTGTCTAT 57.269 50.000 0.00 0.00 0.00 1.98
2625 2749 2.502142 TTCCACGTCTAGCCTGTCTA 57.498 50.000 0.00 0.00 0.00 2.59
2626 2750 1.546476 CTTTCCACGTCTAGCCTGTCT 59.454 52.381 0.00 0.00 0.00 3.41
2627 2751 1.544691 TCTTTCCACGTCTAGCCTGTC 59.455 52.381 0.00 0.00 0.00 3.51
2628 2752 1.629043 TCTTTCCACGTCTAGCCTGT 58.371 50.000 0.00 0.00 0.00 4.00
2629 2753 2.743636 TTCTTTCCACGTCTAGCCTG 57.256 50.000 0.00 0.00 0.00 4.85
2630 2754 2.093447 CCATTCTTTCCACGTCTAGCCT 60.093 50.000 0.00 0.00 0.00 4.58
2634 2758 2.565391 TGAGCCATTCTTTCCACGTCTA 59.435 45.455 0.00 0.00 0.00 2.59
2658 2795 1.273606 TGGCTTGAGTAGAGTGAGCAC 59.726 52.381 0.00 0.00 35.12 4.40
2676 2813 4.321974 GGCTAAAAAGAATTGTGAGGGTGG 60.322 45.833 0.00 0.00 0.00 4.61
2693 2830 2.409064 TATGGATCGGAGGGGCTAAA 57.591 50.000 0.00 0.00 0.00 1.85
2698 2835 5.179452 ACAATTAATATGGATCGGAGGGG 57.821 43.478 0.00 0.00 0.00 4.79
2700 2837 5.643777 GGTGACAATTAATATGGATCGGAGG 59.356 44.000 0.00 0.00 0.00 4.30
2702 2839 5.234752 CGGTGACAATTAATATGGATCGGA 58.765 41.667 0.00 0.00 0.00 4.55
2703 2840 4.391830 CCGGTGACAATTAATATGGATCGG 59.608 45.833 0.00 0.00 0.00 4.18
2705 2842 6.877611 AACCGGTGACAATTAATATGGATC 57.122 37.500 8.52 0.00 0.00 3.36
2706 2843 7.040686 GCTAAACCGGTGACAATTAATATGGAT 60.041 37.037 8.52 0.00 0.00 3.41
2707 2844 6.261381 GCTAAACCGGTGACAATTAATATGGA 59.739 38.462 8.52 0.00 0.00 3.41
2708 2845 6.038825 TGCTAAACCGGTGACAATTAATATGG 59.961 38.462 8.52 0.00 0.00 2.74
2709 2846 6.910433 GTGCTAAACCGGTGACAATTAATATG 59.090 38.462 8.52 0.00 0.00 1.78
2710 2847 6.038936 GGTGCTAAACCGGTGACAATTAATAT 59.961 38.462 8.52 0.00 39.81 1.28
2711 2848 5.354792 GGTGCTAAACCGGTGACAATTAATA 59.645 40.000 8.52 0.00 39.81 0.98
2712 2849 4.157105 GGTGCTAAACCGGTGACAATTAAT 59.843 41.667 8.52 0.00 39.81 1.40
2713 2850 3.502979 GGTGCTAAACCGGTGACAATTAA 59.497 43.478 8.52 0.00 39.81 1.40
2714 2851 3.075884 GGTGCTAAACCGGTGACAATTA 58.924 45.455 8.52 0.92 39.81 1.40
2715 2852 1.883926 GGTGCTAAACCGGTGACAATT 59.116 47.619 8.52 0.00 39.81 2.32
2716 2853 1.530323 GGTGCTAAACCGGTGACAAT 58.470 50.000 8.52 0.00 39.81 2.71
2717 2854 3.009612 GGTGCTAAACCGGTGACAA 57.990 52.632 8.52 0.00 39.81 3.18
2718 2855 4.783667 GGTGCTAAACCGGTGACA 57.216 55.556 8.52 0.56 39.81 3.58
2726 2863 7.822658 TCCATATTAACAACTTGGTGCTAAAC 58.177 34.615 0.00 0.00 0.00 2.01
2727 2864 8.588290 ATCCATATTAACAACTTGGTGCTAAA 57.412 30.769 0.00 0.00 0.00 1.85
2728 2865 7.831690 TGATCCATATTAACAACTTGGTGCTAA 59.168 33.333 0.00 0.00 0.00 3.09
2729 2866 7.342581 TGATCCATATTAACAACTTGGTGCTA 58.657 34.615 0.00 0.00 0.00 3.49
2730 2867 6.186957 TGATCCATATTAACAACTTGGTGCT 58.813 36.000 0.00 0.00 0.00 4.40
2731 2868 6.449635 TGATCCATATTAACAACTTGGTGC 57.550 37.500 0.00 0.00 0.00 5.01
2733 2870 9.300681 CCATATGATCCATATTAACAACTTGGT 57.699 33.333 3.65 0.00 35.18 3.67
2734 2871 9.519191 TCCATATGATCCATATTAACAACTTGG 57.481 33.333 3.65 0.00 35.18 3.61
2737 2874 9.605275 CGATCCATATGATCCATATTAACAACT 57.395 33.333 3.65 0.00 46.06 3.16
2738 2875 8.830580 CCGATCCATATGATCCATATTAACAAC 58.169 37.037 3.65 0.00 46.06 3.32
2739 2876 8.767436 TCCGATCCATATGATCCATATTAACAA 58.233 33.333 3.65 0.00 46.06 2.83
2740 2877 8.317776 TCCGATCCATATGATCCATATTAACA 57.682 34.615 3.65 0.00 46.06 2.41
2741 2878 8.642432 TCTCCGATCCATATGATCCATATTAAC 58.358 37.037 3.65 0.00 46.06 2.01
2742 2879 8.782137 TCTCCGATCCATATGATCCATATTAA 57.218 34.615 3.65 0.00 46.06 1.40
2743 2880 8.227507 TCTCTCCGATCCATATGATCCATATTA 58.772 37.037 3.65 0.00 46.06 0.98
2744 2881 7.071917 TCTCTCCGATCCATATGATCCATATT 58.928 38.462 3.65 0.00 46.06 1.28
2745 2882 6.618501 TCTCTCCGATCCATATGATCCATAT 58.381 40.000 3.65 0.00 46.06 1.78
2746 2883 6.018433 TCTCTCCGATCCATATGATCCATA 57.982 41.667 3.65 0.00 46.06 2.74
2747 2884 4.876580 TCTCTCCGATCCATATGATCCAT 58.123 43.478 3.65 0.00 46.06 3.41
2748 2885 4.264128 ACTCTCTCCGATCCATATGATCCA 60.264 45.833 3.65 0.00 46.06 3.41
2749 2886 4.277476 ACTCTCTCCGATCCATATGATCC 58.723 47.826 3.65 0.00 46.06 3.36
2750 2887 6.770303 TGATACTCTCTCCGATCCATATGATC 59.230 42.308 3.65 4.86 45.46 2.92
2751 2888 6.667661 TGATACTCTCTCCGATCCATATGAT 58.332 40.000 3.65 0.00 36.01 2.45
2752 2889 6.067217 TGATACTCTCTCCGATCCATATGA 57.933 41.667 3.65 0.00 0.00 2.15
2753 2890 5.885352 ACTGATACTCTCTCCGATCCATATG 59.115 44.000 0.00 0.00 0.00 1.78
2754 2891 6.073447 ACTGATACTCTCTCCGATCCATAT 57.927 41.667 0.00 0.00 0.00 1.78
2755 2892 5.506730 ACTGATACTCTCTCCGATCCATA 57.493 43.478 0.00 0.00 0.00 2.74
2756 2893 4.380843 ACTGATACTCTCTCCGATCCAT 57.619 45.455 0.00 0.00 0.00 3.41
2757 2894 3.866703 ACTGATACTCTCTCCGATCCA 57.133 47.619 0.00 0.00 0.00 3.41
2758 2895 5.355910 GGATAACTGATACTCTCTCCGATCC 59.644 48.000 0.00 0.00 0.00 3.36
2759 2896 5.941058 TGGATAACTGATACTCTCTCCGATC 59.059 44.000 0.00 0.00 0.00 3.69
2760 2897 5.882040 TGGATAACTGATACTCTCTCCGAT 58.118 41.667 0.00 0.00 0.00 4.18
2761 2898 5.306114 TGGATAACTGATACTCTCTCCGA 57.694 43.478 0.00 0.00 0.00 4.55
2762 2899 5.475220 ACATGGATAACTGATACTCTCTCCG 59.525 44.000 0.00 0.00 0.00 4.63
2763 2900 6.909550 ACATGGATAACTGATACTCTCTCC 57.090 41.667 0.00 0.00 0.00 3.71
2764 2901 8.682710 GGATACATGGATAACTGATACTCTCTC 58.317 40.741 0.00 0.00 0.00 3.20
2765 2902 8.397957 AGGATACATGGATAACTGATACTCTCT 58.602 37.037 0.00 0.00 41.41 3.10
2766 2903 8.588290 AGGATACATGGATAACTGATACTCTC 57.412 38.462 0.00 0.00 41.41 3.20
2767 2904 8.397957 AGAGGATACATGGATAACTGATACTCT 58.602 37.037 0.00 0.00 41.41 3.24
2768 2905 8.588290 AGAGGATACATGGATAACTGATACTC 57.412 38.462 0.00 0.00 41.41 2.59
2769 2906 7.617723 GGAGAGGATACATGGATAACTGATACT 59.382 40.741 0.00 0.00 41.41 2.12
2770 2907 7.617723 AGGAGAGGATACATGGATAACTGATAC 59.382 40.741 0.00 0.00 41.41 2.24
2771 2908 7.713518 AGGAGAGGATACATGGATAACTGATA 58.286 38.462 0.00 0.00 41.41 2.15
2772 2909 6.569737 AGGAGAGGATACATGGATAACTGAT 58.430 40.000 0.00 0.00 41.41 2.90
2773 2910 5.970289 AGGAGAGGATACATGGATAACTGA 58.030 41.667 0.00 0.00 41.41 3.41
2774 2911 7.782897 TTAGGAGAGGATACATGGATAACTG 57.217 40.000 0.00 0.00 41.41 3.16
2818 2955 6.667848 TCCTAGACCAATAATTCAGTGTCTGA 59.332 38.462 9.59 0.00 38.87 3.27
2819 2956 6.878317 TCCTAGACCAATAATTCAGTGTCTG 58.122 40.000 9.59 0.00 0.00 3.51
2820 2957 7.496346 TTCCTAGACCAATAATTCAGTGTCT 57.504 36.000 0.00 0.00 0.00 3.41
2821 2958 7.606456 TGTTTCCTAGACCAATAATTCAGTGTC 59.394 37.037 0.00 0.00 0.00 3.67
2822 2959 7.458397 TGTTTCCTAGACCAATAATTCAGTGT 58.542 34.615 0.00 0.00 0.00 3.55
2823 2960 7.921786 TGTTTCCTAGACCAATAATTCAGTG 57.078 36.000 0.00 0.00 0.00 3.66
2832 2969 9.190317 GGAGAAAATTATGTTTCCTAGACCAAT 57.810 33.333 0.00 0.00 38.10 3.16
2833 2970 8.390921 AGGAGAAAATTATGTTTCCTAGACCAA 58.609 33.333 0.00 0.00 38.10 3.67
2834 2971 7.829211 CAGGAGAAAATTATGTTTCCTAGACCA 59.171 37.037 0.00 0.00 38.10 4.02
2835 2972 7.201741 GCAGGAGAAAATTATGTTTCCTAGACC 60.202 40.741 0.00 0.00 38.10 3.85
2836 2973 7.466050 CGCAGGAGAAAATTATGTTTCCTAGAC 60.466 40.741 0.00 0.00 38.10 2.59
2837 2974 6.538742 CGCAGGAGAAAATTATGTTTCCTAGA 59.461 38.462 0.00 0.00 38.10 2.43
2838 2975 6.538742 TCGCAGGAGAAAATTATGTTTCCTAG 59.461 38.462 0.00 0.00 38.10 3.02
2839 2976 6.411376 TCGCAGGAGAAAATTATGTTTCCTA 58.589 36.000 0.00 0.00 38.10 2.94
2840 2977 5.253330 TCGCAGGAGAAAATTATGTTTCCT 58.747 37.500 0.00 0.00 38.10 3.36
2841 2978 5.560966 TCGCAGGAGAAAATTATGTTTCC 57.439 39.130 0.00 0.00 38.10 3.13
2842 2979 6.842163 TCTTCGCAGGAGAAAATTATGTTTC 58.158 36.000 0.00 0.00 37.70 2.78
2843 2980 6.817765 TCTTCGCAGGAGAAAATTATGTTT 57.182 33.333 0.00 0.00 0.00 2.83
2844 2981 6.599244 TCATCTTCGCAGGAGAAAATTATGTT 59.401 34.615 0.00 0.00 0.00 2.71
2845 2982 6.115446 TCATCTTCGCAGGAGAAAATTATGT 58.885 36.000 0.00 0.00 0.00 2.29
2846 2983 6.481313 TCTCATCTTCGCAGGAGAAAATTATG 59.519 38.462 0.00 0.00 33.73 1.90
2847 2984 6.586344 TCTCATCTTCGCAGGAGAAAATTAT 58.414 36.000 0.00 0.00 33.73 1.28
2848 2985 5.977635 TCTCATCTTCGCAGGAGAAAATTA 58.022 37.500 0.00 0.00 33.73 1.40
2849 2986 4.836825 TCTCATCTTCGCAGGAGAAAATT 58.163 39.130 0.00 0.00 33.73 1.82
2850 2987 4.478206 TCTCATCTTCGCAGGAGAAAAT 57.522 40.909 0.00 0.00 33.73 1.82
2851 2988 3.961480 TCTCATCTTCGCAGGAGAAAA 57.039 42.857 0.00 0.00 33.73 2.29
2852 2989 3.961480 TTCTCATCTTCGCAGGAGAAA 57.039 42.857 0.00 0.00 41.84 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.