Multiple sequence alignment - TraesCS4A01G313700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G313700 chr4A 100.000 2494 0 0 599 3092 604105609 604103116 0.000000e+00 4606.0
1 TraesCS4A01G313700 chr4A 100.000 285 0 0 1 285 604106207 604105923 7.590000e-146 527.0
2 TraesCS4A01G313700 chr4A 98.658 149 2 0 630 778 511238248 511238396 6.570000e-67 265.0
3 TraesCS4A01G313700 chr4A 92.045 88 4 3 139 224 641459962 641460048 1.510000e-23 121.0
4 TraesCS4A01G313700 chr5B 92.524 1137 77 6 977 2107 710608485 710609619 0.000000e+00 1622.0
5 TraesCS4A01G313700 chr5B 91.566 581 22 14 2457 3019 710610031 710610602 0.000000e+00 776.0
6 TraesCS4A01G313700 chr5B 83.110 373 13 15 2082 2432 710609625 710609969 8.390000e-76 294.0
7 TraesCS4A01G313700 chr5B 100.000 144 0 0 630 773 576229582 576229439 1.830000e-67 267.0
8 TraesCS4A01G313700 chr5B 98.667 150 0 1 630 779 50280291 50280144 6.570000e-67 265.0
9 TraesCS4A01G313700 chr5B 97.279 147 4 0 630 776 115865910 115865764 1.840000e-62 250.0
10 TraesCS4A01G313700 chr5B 94.444 144 7 1 630 773 561713997 561713855 1.440000e-53 220.0
11 TraesCS4A01G313700 chr5B 90.909 143 12 1 3 144 289144318 289144176 1.130000e-44 191.0
12 TraesCS4A01G313700 chr5B 89.781 137 13 1 1 137 491146000 491145865 1.140000e-39 174.0
13 TraesCS4A01G313700 chr5B 88.776 98 5 6 139 231 445189683 445189779 7.010000e-22 115.0
14 TraesCS4A01G313700 chr5B 97.917 48 1 0 933 980 710608397 710608444 1.980000e-12 84.2
15 TraesCS4A01G313700 chr5D 89.965 1156 59 16 983 2127 560224868 560225977 0.000000e+00 1439.0
16 TraesCS4A01G313700 chr5D 86.394 904 44 32 2180 3015 560225990 560226882 0.000000e+00 915.0
17 TraesCS4A01G313700 chr5D 91.837 147 8 4 138 282 560224012 560224156 5.230000e-48 202.0
18 TraesCS4A01G313700 chr5D 92.857 112 6 2 2909 3019 107312816 107312926 8.870000e-36 161.0
19 TraesCS4A01G313700 chr5D 97.333 75 2 0 908 982 560224746 560224820 9.000000e-26 128.0
20 TraesCS4A01G313700 chr3B 84.057 1129 156 13 972 2094 700073359 700072249 0.000000e+00 1066.0
21 TraesCS4A01G313700 chr3B 84.044 1103 160 8 988 2090 700234815 700235901 0.000000e+00 1048.0
22 TraesCS4A01G313700 chr3B 99.286 140 1 0 630 769 23715092 23714953 1.420000e-63 254.0
23 TraesCS4A01G313700 chr3B 97.902 143 3 0 630 772 120572951 120573093 6.620000e-62 248.0
24 TraesCS4A01G313700 chr3B 94.595 148 8 0 630 777 66177799 66177946 2.400000e-56 230.0
25 TraesCS4A01G313700 chr7D 84.158 1111 156 11 988 2094 624769101 624770195 0.000000e+00 1059.0
26 TraesCS4A01G313700 chr7D 89.247 93 6 4 139 229 636339713 636339623 2.520000e-21 113.0
27 TraesCS4A01G313700 chr3A 83.741 1144 158 17 972 2107 663441836 663440713 0.000000e+00 1057.0
28 TraesCS4A01G313700 chr3A 82.880 1139 174 13 972 2107 663451975 663450855 0.000000e+00 1003.0
29 TraesCS4A01G313700 chr3A 89.510 143 15 0 1 143 646004795 646004937 6.810000e-42 182.0
30 TraesCS4A01G313700 chr3D 83.688 1128 162 12 971 2094 529496533 529495424 0.000000e+00 1044.0
31 TraesCS4A01G313700 chr3D 82.005 1117 161 17 979 2094 529503779 529502702 0.000000e+00 913.0
32 TraesCS4A01G313700 chr3D 90.909 143 13 0 1 143 603747046 603747188 3.150000e-45 193.0
33 TraesCS4A01G313700 chr2D 81.141 1087 160 26 1031 2096 13770230 13771292 0.000000e+00 830.0
34 TraesCS4A01G313700 chr2D 90.370 135 11 2 3 136 609193611 609193744 3.170000e-40 176.0
35 TraesCS4A01G313700 chr2D 94.643 112 4 2 2909 3019 72816070 72815960 4.100000e-39 172.0
36 TraesCS4A01G313700 chr6B 100.000 144 0 0 630 773 665534584 665534727 1.830000e-67 267.0
37 TraesCS4A01G313700 chr7A 98.000 150 2 1 630 779 22373569 22373717 3.060000e-65 259.0
38 TraesCS4A01G313700 chr7A 92.793 111 6 2 2910 3019 70103069 70102960 3.190000e-35 159.0
39 TraesCS4A01G313700 chr7A 92.135 89 4 3 136 222 689704223 689704310 4.190000e-24 122.0
40 TraesCS4A01G313700 chr7A 91.954 87 4 3 139 223 291809978 291810063 5.420000e-23 119.0
41 TraesCS4A01G313700 chr7B 98.601 143 2 0 630 772 504951568 504951710 1.420000e-63 254.0
42 TraesCS4A01G313700 chr7B 97.222 144 4 0 630 773 184229368 184229511 8.560000e-61 244.0
43 TraesCS4A01G313700 chr7B 90.840 131 10 1 6 136 73338354 73338226 1.140000e-39 174.0
44 TraesCS4A01G313700 chr7B 93.976 83 4 1 139 220 138447871 138447789 1.160000e-24 124.0
45 TraesCS4A01G313700 chr6D 91.852 135 9 2 3 136 422946990 422946857 1.460000e-43 187.0
46 TraesCS4A01G313700 chr6D 91.011 89 5 3 139 225 144603237 144603150 1.950000e-22 117.0
47 TraesCS4A01G313700 chr6A 91.111 135 11 1 2 136 145247722 145247855 6.810000e-42 182.0
48 TraesCS4A01G313700 chr6A 93.636 110 5 2 2911 3019 376696583 376696475 2.470000e-36 163.0
49 TraesCS4A01G313700 chr6A 92.771 83 5 1 139 220 599753471 599753553 5.420000e-23 119.0
50 TraesCS4A01G313700 chr4D 90.370 135 11 2 3 136 366321099 366321232 3.170000e-40 176.0
51 TraesCS4A01G313700 chrUn 93.750 112 5 2 2909 3019 184901128 184901018 1.910000e-37 167.0
52 TraesCS4A01G313700 chr2B 93.750 112 5 2 2909 3019 755390342 755390452 1.910000e-37 167.0
53 TraesCS4A01G313700 chr2A 93.750 112 5 2 2909 3019 82804415 82804525 1.910000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G313700 chr4A 604103116 604106207 3091 True 2566.50 4606 100.00000 1 3092 2 chr4A.!!$R1 3091
1 TraesCS4A01G313700 chr5B 710608397 710610602 2205 False 694.05 1622 91.27925 933 3019 4 chr5B.!!$F2 2086
2 TraesCS4A01G313700 chr5D 560224012 560226882 2870 False 671.00 1439 91.38225 138 3015 4 chr5D.!!$F2 2877
3 TraesCS4A01G313700 chr3B 700072249 700073359 1110 True 1066.00 1066 84.05700 972 2094 1 chr3B.!!$R2 1122
4 TraesCS4A01G313700 chr3B 700234815 700235901 1086 False 1048.00 1048 84.04400 988 2090 1 chr3B.!!$F3 1102
5 TraesCS4A01G313700 chr7D 624769101 624770195 1094 False 1059.00 1059 84.15800 988 2094 1 chr7D.!!$F1 1106
6 TraesCS4A01G313700 chr3A 663440713 663441836 1123 True 1057.00 1057 83.74100 972 2107 1 chr3A.!!$R1 1135
7 TraesCS4A01G313700 chr3A 663450855 663451975 1120 True 1003.00 1003 82.88000 972 2107 1 chr3A.!!$R2 1135
8 TraesCS4A01G313700 chr3D 529495424 529496533 1109 True 1044.00 1044 83.68800 971 2094 1 chr3D.!!$R1 1123
9 TraesCS4A01G313700 chr3D 529502702 529503779 1077 True 913.00 913 82.00500 979 2094 1 chr3D.!!$R2 1115
10 TraesCS4A01G313700 chr2D 13770230 13771292 1062 False 830.00 830 81.14100 1031 2096 1 chr2D.!!$F1 1065

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 666 0.235404 CGCCAAATTTGCTTGCAACC 59.765 50.0 12.92 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 2740 1.063616 CTGCATGTCCAGCTGAATTCG 59.936 52.381 17.39 1.39 33.39 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.924262 CAACTTTGTGAGCATGTATAATATCG 57.076 34.615 0.00 0.00 0.00 2.92
26 27 8.764287 CAACTTTGTGAGCATGTATAATATCGA 58.236 33.333 0.00 0.00 0.00 3.59
27 28 8.526218 ACTTTGTGAGCATGTATAATATCGAG 57.474 34.615 0.00 0.00 0.00 4.04
28 29 8.360390 ACTTTGTGAGCATGTATAATATCGAGA 58.640 33.333 0.00 0.00 0.00 4.04
29 30 9.363763 CTTTGTGAGCATGTATAATATCGAGAT 57.636 33.333 0.00 0.00 0.00 2.75
30 31 8.693542 TTGTGAGCATGTATAATATCGAGATG 57.306 34.615 0.00 0.00 0.00 2.90
31 32 7.830739 TGTGAGCATGTATAATATCGAGATGT 58.169 34.615 0.00 0.00 0.00 3.06
32 33 8.956426 TGTGAGCATGTATAATATCGAGATGTA 58.044 33.333 0.00 0.00 0.00 2.29
33 34 9.227490 GTGAGCATGTATAATATCGAGATGTAC 57.773 37.037 0.00 1.35 0.00 2.90
34 35 8.956426 TGAGCATGTATAATATCGAGATGTACA 58.044 33.333 16.19 16.19 0.00 2.90
35 36 9.227490 GAGCATGTATAATATCGAGATGTACAC 57.773 37.037 16.19 8.50 0.00 2.90
36 37 7.910683 AGCATGTATAATATCGAGATGTACACG 59.089 37.037 16.19 11.73 0.00 4.49
37 38 7.305475 GCATGTATAATATCGAGATGTACACGC 60.305 40.741 15.93 15.93 33.00 5.34
38 39 6.549061 TGTATAATATCGAGATGTACACGCC 58.451 40.000 12.06 0.00 33.00 5.68
39 40 5.638596 ATAATATCGAGATGTACACGCCA 57.361 39.130 0.00 0.00 33.00 5.69
40 41 4.316205 AATATCGAGATGTACACGCCAA 57.684 40.909 0.00 0.00 33.00 4.52
41 42 2.890808 ATCGAGATGTACACGCCAAT 57.109 45.000 0.00 0.00 33.00 3.16
42 43 2.665649 TCGAGATGTACACGCCAATT 57.334 45.000 0.00 0.00 33.00 2.32
43 44 2.967362 TCGAGATGTACACGCCAATTT 58.033 42.857 0.00 0.00 33.00 1.82
44 45 3.331150 TCGAGATGTACACGCCAATTTT 58.669 40.909 0.00 0.00 33.00 1.82
45 46 3.749088 TCGAGATGTACACGCCAATTTTT 59.251 39.130 0.00 0.00 33.00 1.94
101 102 8.507249 TGTTCAAAACACATTTTAAAAACCAGG 58.493 29.630 4.44 0.00 35.79 4.45
102 103 8.722394 GTTCAAAACACATTTTAAAAACCAGGA 58.278 29.630 4.44 0.00 35.79 3.86
103 104 8.485976 TCAAAACACATTTTAAAAACCAGGAG 57.514 30.769 4.44 0.00 35.79 3.69
104 105 6.918892 AAACACATTTTAAAAACCAGGAGC 57.081 33.333 4.44 0.00 0.00 4.70
105 106 4.616953 ACACATTTTAAAAACCAGGAGCG 58.383 39.130 4.44 0.00 0.00 5.03
106 107 3.428534 CACATTTTAAAAACCAGGAGCGC 59.571 43.478 4.44 0.00 0.00 5.92
107 108 2.409152 TTTTAAAAACCAGGAGCGCG 57.591 45.000 0.00 0.00 0.00 6.86
108 109 1.310904 TTTAAAAACCAGGAGCGCGT 58.689 45.000 8.43 0.00 0.00 6.01
109 110 0.589223 TTAAAAACCAGGAGCGCGTG 59.411 50.000 8.43 2.90 0.00 5.34
110 111 1.847890 TAAAAACCAGGAGCGCGTGC 61.848 55.000 14.39 14.39 43.24 5.34
123 124 2.672651 CGTGCTCCCATGTGCCAA 60.673 61.111 0.00 0.00 0.00 4.52
124 125 2.267351 CGTGCTCCCATGTGCCAAA 61.267 57.895 0.00 0.00 0.00 3.28
125 126 1.804396 CGTGCTCCCATGTGCCAAAA 61.804 55.000 0.00 0.00 0.00 2.44
126 127 0.319813 GTGCTCCCATGTGCCAAAAC 60.320 55.000 0.00 0.00 0.00 2.43
127 128 1.080569 GCTCCCATGTGCCAAAACG 60.081 57.895 0.00 0.00 0.00 3.60
128 129 1.805428 GCTCCCATGTGCCAAAACGT 61.805 55.000 0.00 0.00 0.00 3.99
129 130 0.240945 CTCCCATGTGCCAAAACGTC 59.759 55.000 0.00 0.00 0.00 4.34
130 131 0.466372 TCCCATGTGCCAAAACGTCA 60.466 50.000 0.00 0.00 0.00 4.35
131 132 0.318614 CCCATGTGCCAAAACGTCAC 60.319 55.000 0.00 0.00 0.00 3.67
132 133 0.667993 CCATGTGCCAAAACGTCACT 59.332 50.000 5.99 0.00 0.00 3.41
133 134 1.334960 CCATGTGCCAAAACGTCACTC 60.335 52.381 5.99 0.00 0.00 3.51
134 135 1.603802 CATGTGCCAAAACGTCACTCT 59.396 47.619 5.99 0.00 0.00 3.24
135 136 1.295792 TGTGCCAAAACGTCACTCTC 58.704 50.000 5.99 0.00 0.00 3.20
136 137 1.134521 TGTGCCAAAACGTCACTCTCT 60.135 47.619 5.99 0.00 0.00 3.10
141 142 4.213270 TGCCAAAACGTCACTCTCTTATTG 59.787 41.667 0.00 0.00 0.00 1.90
193 194 8.728088 ATTACATGCAAGACTTAAAAAGAACG 57.272 30.769 0.00 0.00 0.00 3.95
226 229 8.004215 TCAATCATTATACATGCCCTAAAACCT 58.996 33.333 0.00 0.00 0.00 3.50
229 232 8.918202 TCATTATACATGCCCTAAAACCTAAG 57.082 34.615 0.00 0.00 0.00 2.18
631 634 5.646360 GGCAACTTACCATTAGCTAAACTGA 59.354 40.000 10.85 0.00 0.00 3.41
632 635 6.150474 GGCAACTTACCATTAGCTAAACTGAA 59.850 38.462 10.85 2.57 0.00 3.02
633 636 7.244192 GCAACTTACCATTAGCTAAACTGAAG 58.756 38.462 10.85 13.50 0.00 3.02
634 637 6.986904 ACTTACCATTAGCTAAACTGAAGC 57.013 37.500 10.85 0.00 40.40 3.86
645 648 6.209129 GCTAAACTGAAGCTCATAATCTCG 57.791 41.667 0.00 0.00 37.01 4.04
646 649 5.332959 GCTAAACTGAAGCTCATAATCTCGC 60.333 44.000 0.00 0.00 37.01 5.03
647 650 3.104843 ACTGAAGCTCATAATCTCGCC 57.895 47.619 0.00 0.00 0.00 5.54
648 651 2.432146 ACTGAAGCTCATAATCTCGCCA 59.568 45.455 0.00 0.00 0.00 5.69
649 652 3.118629 ACTGAAGCTCATAATCTCGCCAA 60.119 43.478 0.00 0.00 0.00 4.52
650 653 3.872696 TGAAGCTCATAATCTCGCCAAA 58.127 40.909 0.00 0.00 0.00 3.28
651 654 4.454678 TGAAGCTCATAATCTCGCCAAAT 58.545 39.130 0.00 0.00 0.00 2.32
652 655 4.883585 TGAAGCTCATAATCTCGCCAAATT 59.116 37.500 0.00 0.00 0.00 1.82
653 656 5.357878 TGAAGCTCATAATCTCGCCAAATTT 59.642 36.000 0.00 0.00 0.00 1.82
654 657 5.179045 AGCTCATAATCTCGCCAAATTTG 57.821 39.130 11.40 11.40 0.00 2.32
655 658 3.732721 GCTCATAATCTCGCCAAATTTGC 59.267 43.478 12.92 7.50 0.00 3.68
656 659 4.498682 GCTCATAATCTCGCCAAATTTGCT 60.499 41.667 12.92 0.00 0.00 3.91
657 660 5.581126 TCATAATCTCGCCAAATTTGCTT 57.419 34.783 12.92 2.36 0.00 3.91
658 661 5.342433 TCATAATCTCGCCAAATTTGCTTG 58.658 37.500 12.92 4.62 0.00 4.01
659 662 2.000429 ATCTCGCCAAATTTGCTTGC 58.000 45.000 12.92 9.89 0.00 4.01
660 663 0.672889 TCTCGCCAAATTTGCTTGCA 59.327 45.000 12.92 0.00 0.00 4.08
661 664 1.068281 TCTCGCCAAATTTGCTTGCAA 59.932 42.857 12.92 3.70 0.00 4.08
662 665 1.192980 CTCGCCAAATTTGCTTGCAAC 59.807 47.619 12.92 0.00 0.00 4.17
663 666 0.235404 CGCCAAATTTGCTTGCAACC 59.765 50.000 12.92 0.00 0.00 3.77
664 667 1.596603 GCCAAATTTGCTTGCAACCT 58.403 45.000 12.92 0.00 0.00 3.50
665 668 2.765122 GCCAAATTTGCTTGCAACCTA 58.235 42.857 12.92 0.00 0.00 3.08
666 669 2.738314 GCCAAATTTGCTTGCAACCTAG 59.262 45.455 12.92 0.00 0.00 3.02
667 670 3.554752 GCCAAATTTGCTTGCAACCTAGA 60.555 43.478 12.92 0.00 0.00 2.43
668 671 4.824289 CCAAATTTGCTTGCAACCTAGAT 58.176 39.130 12.92 0.00 0.00 1.98
669 672 5.624281 GCCAAATTTGCTTGCAACCTAGATA 60.624 40.000 12.92 0.00 0.00 1.98
670 673 6.576185 CCAAATTTGCTTGCAACCTAGATAT 58.424 36.000 12.92 0.00 0.00 1.63
671 674 7.684187 GCCAAATTTGCTTGCAACCTAGATATA 60.684 37.037 12.92 0.00 0.00 0.86
672 675 7.864379 CCAAATTTGCTTGCAACCTAGATATAG 59.136 37.037 12.92 0.00 0.00 1.31
673 676 7.516198 AATTTGCTTGCAACCTAGATATAGG 57.484 36.000 12.00 12.00 42.86 2.57
687 690 8.423906 CCTAGATATAGGTAGACATGTTTGGT 57.576 38.462 5.16 0.00 32.60 3.67
688 691 8.871125 CCTAGATATAGGTAGACATGTTTGGTT 58.129 37.037 5.16 0.00 32.60 3.67
689 692 9.698309 CTAGATATAGGTAGACATGTTTGGTTG 57.302 37.037 0.00 0.00 0.00 3.77
690 693 7.509546 AGATATAGGTAGACATGTTTGGTTGG 58.490 38.462 0.00 0.00 0.00 3.77
691 694 3.154827 AGGTAGACATGTTTGGTTGGG 57.845 47.619 0.00 0.00 0.00 4.12
692 695 1.544246 GGTAGACATGTTTGGTTGGGC 59.456 52.381 0.00 0.00 0.00 5.36
693 696 2.235016 GTAGACATGTTTGGTTGGGCA 58.765 47.619 0.00 0.00 0.00 5.36
694 697 1.786937 AGACATGTTTGGTTGGGCAA 58.213 45.000 0.00 0.00 0.00 4.52
695 698 2.328319 AGACATGTTTGGTTGGGCAAT 58.672 42.857 0.00 0.00 0.00 3.56
696 699 2.299867 AGACATGTTTGGTTGGGCAATC 59.700 45.455 0.00 0.00 0.00 2.67
697 700 1.347378 ACATGTTTGGTTGGGCAATCC 59.653 47.619 0.00 0.00 0.00 3.01
698 701 1.624813 CATGTTTGGTTGGGCAATCCT 59.375 47.619 0.00 0.00 36.20 3.24
699 702 1.337118 TGTTTGGTTGGGCAATCCTC 58.663 50.000 0.00 0.00 36.20 3.71
700 703 1.337118 GTTTGGTTGGGCAATCCTCA 58.663 50.000 0.00 0.00 36.20 3.86
701 704 1.901833 GTTTGGTTGGGCAATCCTCAT 59.098 47.619 0.00 0.00 36.20 2.90
702 705 1.559368 TTGGTTGGGCAATCCTCATG 58.441 50.000 0.00 0.00 36.20 3.07
703 706 0.703488 TGGTTGGGCAATCCTCATGA 59.297 50.000 0.00 0.00 36.20 3.07
704 707 1.288633 TGGTTGGGCAATCCTCATGAT 59.711 47.619 0.00 0.00 36.20 2.45
705 708 1.959282 GGTTGGGCAATCCTCATGATC 59.041 52.381 0.00 0.00 36.20 2.92
706 709 1.959282 GTTGGGCAATCCTCATGATCC 59.041 52.381 0.00 0.00 36.20 3.36
707 710 0.479815 TGGGCAATCCTCATGATCCC 59.520 55.000 0.00 1.41 37.81 3.85
708 711 0.607489 GGGCAATCCTCATGATCCCG 60.607 60.000 0.00 0.00 30.17 5.14
709 712 0.397941 GGCAATCCTCATGATCCCGA 59.602 55.000 0.00 0.00 31.61 5.14
710 713 1.004044 GGCAATCCTCATGATCCCGAT 59.996 52.381 0.00 0.00 31.61 4.18
711 714 2.354259 GCAATCCTCATGATCCCGATC 58.646 52.381 0.00 0.00 38.29 3.69
712 715 2.027377 GCAATCCTCATGATCCCGATCT 60.027 50.000 0.00 0.00 38.60 2.75
713 716 3.558746 GCAATCCTCATGATCCCGATCTT 60.559 47.826 0.00 0.00 38.60 2.40
714 717 3.977134 ATCCTCATGATCCCGATCTTG 57.023 47.619 12.22 12.22 41.58 3.02
715 718 2.682594 TCCTCATGATCCCGATCTTGT 58.317 47.619 16.03 0.00 41.22 3.16
716 719 3.844640 TCCTCATGATCCCGATCTTGTA 58.155 45.455 16.03 6.55 41.22 2.41
717 720 3.574396 TCCTCATGATCCCGATCTTGTAC 59.426 47.826 16.03 0.00 41.22 2.90
718 721 3.306364 CCTCATGATCCCGATCTTGTACC 60.306 52.174 16.03 0.00 41.22 3.34
719 722 3.576118 CTCATGATCCCGATCTTGTACCT 59.424 47.826 16.03 0.00 41.22 3.08
720 723 4.736473 TCATGATCCCGATCTTGTACCTA 58.264 43.478 16.03 0.01 41.22 3.08
721 724 5.333581 TCATGATCCCGATCTTGTACCTAT 58.666 41.667 16.03 0.00 41.22 2.57
722 725 5.185828 TCATGATCCCGATCTTGTACCTATG 59.814 44.000 16.03 6.01 41.22 2.23
723 726 4.736473 TGATCCCGATCTTGTACCTATGA 58.264 43.478 6.28 0.00 38.60 2.15
724 727 4.523173 TGATCCCGATCTTGTACCTATGAC 59.477 45.833 6.28 0.00 38.60 3.06
725 728 3.905968 TCCCGATCTTGTACCTATGACA 58.094 45.455 0.00 0.00 0.00 3.58
726 729 4.283337 TCCCGATCTTGTACCTATGACAA 58.717 43.478 0.00 0.00 35.55 3.18
727 730 4.899457 TCCCGATCTTGTACCTATGACAAT 59.101 41.667 0.00 0.00 36.27 2.71
728 731 5.365605 TCCCGATCTTGTACCTATGACAATT 59.634 40.000 0.00 0.00 36.27 2.32
729 732 5.466728 CCCGATCTTGTACCTATGACAATTG 59.533 44.000 3.24 3.24 36.27 2.32
730 733 5.050091 CCGATCTTGTACCTATGACAATTGC 60.050 44.000 5.05 0.00 36.27 3.56
731 734 5.755375 CGATCTTGTACCTATGACAATTGCT 59.245 40.000 5.05 0.00 36.27 3.91
732 735 6.258727 CGATCTTGTACCTATGACAATTGCTT 59.741 38.462 5.05 0.00 36.27 3.91
733 736 6.985188 TCTTGTACCTATGACAATTGCTTC 57.015 37.500 5.05 0.00 36.27 3.86
734 737 6.711277 TCTTGTACCTATGACAATTGCTTCT 58.289 36.000 5.05 0.00 36.27 2.85
735 738 6.595326 TCTTGTACCTATGACAATTGCTTCTG 59.405 38.462 5.05 0.00 36.27 3.02
736 739 6.048732 TGTACCTATGACAATTGCTTCTGA 57.951 37.500 5.05 0.00 0.00 3.27
737 740 6.472016 TGTACCTATGACAATTGCTTCTGAA 58.528 36.000 5.05 0.00 0.00 3.02
738 741 7.112122 TGTACCTATGACAATTGCTTCTGAAT 58.888 34.615 5.05 0.00 0.00 2.57
739 742 8.264347 TGTACCTATGACAATTGCTTCTGAATA 58.736 33.333 5.05 0.00 0.00 1.75
740 743 9.109393 GTACCTATGACAATTGCTTCTGAATAA 57.891 33.333 5.05 0.00 0.00 1.40
741 744 8.579850 ACCTATGACAATTGCTTCTGAATAAA 57.420 30.769 5.05 0.00 0.00 1.40
742 745 9.193806 ACCTATGACAATTGCTTCTGAATAAAT 57.806 29.630 5.05 0.00 0.00 1.40
747 750 9.357652 TGACAATTGCTTCTGAATAAATAAAGC 57.642 29.630 5.05 0.00 42.02 3.51
751 754 5.894807 TGCTTCTGAATAAATAAAGCAGGC 58.105 37.500 4.12 0.00 45.25 4.85
752 755 4.972440 GCTTCTGAATAAATAAAGCAGGCG 59.028 41.667 0.00 0.00 41.46 5.52
753 756 5.220854 GCTTCTGAATAAATAAAGCAGGCGA 60.221 40.000 0.00 0.00 41.46 5.54
754 757 5.991328 TCTGAATAAATAAAGCAGGCGAG 57.009 39.130 0.00 0.00 0.00 5.03
755 758 5.670485 TCTGAATAAATAAAGCAGGCGAGA 58.330 37.500 0.00 0.00 0.00 4.04
756 759 6.112734 TCTGAATAAATAAAGCAGGCGAGAA 58.887 36.000 0.00 0.00 0.00 2.87
757 760 6.767902 TCTGAATAAATAAAGCAGGCGAGAAT 59.232 34.615 0.00 0.00 0.00 2.40
758 761 7.283127 TCTGAATAAATAAAGCAGGCGAGAATT 59.717 33.333 0.00 0.00 0.00 2.17
759 762 7.417612 TGAATAAATAAAGCAGGCGAGAATTC 58.582 34.615 0.00 0.00 0.00 2.17
760 763 7.283127 TGAATAAATAAAGCAGGCGAGAATTCT 59.717 33.333 7.95 7.95 0.00 2.40
761 764 5.491635 AAATAAAGCAGGCGAGAATTCTC 57.508 39.130 23.20 23.20 39.55 2.87
762 765 2.479566 AAAGCAGGCGAGAATTCTCA 57.520 45.000 29.93 0.00 43.00 3.27
763 766 2.479566 AAGCAGGCGAGAATTCTCAA 57.520 45.000 29.93 0.00 43.00 3.02
764 767 2.479566 AGCAGGCGAGAATTCTCAAA 57.520 45.000 29.93 0.00 43.00 2.69
765 768 2.783135 AGCAGGCGAGAATTCTCAAAA 58.217 42.857 29.93 0.00 43.00 2.44
766 769 3.149196 AGCAGGCGAGAATTCTCAAAAA 58.851 40.909 29.93 0.00 43.00 1.94
799 802 3.596214 ACTGCAGTTATTTGTACTCCCG 58.404 45.455 15.25 0.00 0.00 5.14
982 1324 0.752658 TCACTCCCACACACACAGAG 59.247 55.000 0.00 0.00 0.00 3.35
983 1325 0.882042 CACTCCCACACACACAGAGC 60.882 60.000 0.00 0.00 0.00 4.09
984 1326 1.050988 ACTCCCACACACACAGAGCT 61.051 55.000 0.00 0.00 0.00 4.09
1320 1724 4.632458 GAGATCCTCGCGGCGGTC 62.632 72.222 23.46 14.83 0.00 4.79
1833 2243 2.420043 CTGGTGGTGAACGTCGGT 59.580 61.111 0.00 0.00 0.00 4.69
2097 2531 2.656085 CGCGTCAGGATCTGAATCTAC 58.344 52.381 0.00 0.00 42.46 2.59
2128 2594 9.958180 TCCAATCTGAATGTATCTAAGTCAAAA 57.042 29.630 0.00 0.00 0.00 2.44
2166 2649 6.427853 TCTTGTGTTCATGATTCAGATTCGTT 59.572 34.615 0.00 0.00 0.00 3.85
2246 2740 5.791336 ACTCTTTTGAAGGGTGGAAATTC 57.209 39.130 0.00 0.00 41.71 2.17
2293 2787 6.492772 GCAGATTTAAATTCCCCTGAGATGAT 59.507 38.462 15.29 0.00 0.00 2.45
2294 2788 7.015001 GCAGATTTAAATTCCCCTGAGATGATT 59.985 37.037 15.29 0.00 0.00 2.57
2295 2789 9.578576 CAGATTTAAATTCCCCTGAGATGATTA 57.421 33.333 1.43 0.00 0.00 1.75
2296 2790 9.579932 AGATTTAAATTCCCCTGAGATGATTAC 57.420 33.333 1.43 0.00 0.00 1.89
2298 2792 8.752005 TTTAAATTCCCCTGAGATGATTACAG 57.248 34.615 0.00 0.00 0.00 2.74
2300 2794 3.421394 TCCCCTGAGATGATTACAGGT 57.579 47.619 14.38 0.00 46.61 4.00
2301 2795 4.552883 TCCCCTGAGATGATTACAGGTA 57.447 45.455 14.38 3.83 46.61 3.08
2302 2796 4.483950 TCCCCTGAGATGATTACAGGTAG 58.516 47.826 14.38 8.14 46.61 3.18
2303 2797 3.580458 CCCCTGAGATGATTACAGGTAGG 59.420 52.174 14.38 8.15 46.61 3.18
2305 2799 4.901849 CCCTGAGATGATTACAGGTAGGAA 59.098 45.833 14.38 0.00 46.61 3.36
2308 2802 6.463614 CCTGAGATGATTACAGGTAGGAAAGG 60.464 46.154 0.00 0.00 44.06 3.11
2309 2803 5.366768 TGAGATGATTACAGGTAGGAAAGGG 59.633 44.000 0.00 0.00 0.00 3.95
2311 2805 5.970640 AGATGATTACAGGTAGGAAAGGGAA 59.029 40.000 0.00 0.00 0.00 3.97
2335 2832 8.547967 AAACATACAGTAGTAACATGAACTGG 57.452 34.615 13.47 7.31 42.87 4.00
2343 2840 8.783093 CAGTAGTAACATGAACTGGAAATGAAA 58.217 33.333 13.47 0.00 36.53 2.69
2345 2842 9.774742 GTAGTAACATGAACTGGAAATGAAATC 57.225 33.333 13.47 0.00 0.00 2.17
2347 2844 8.859090 AGTAACATGAACTGGAAATGAAATCAA 58.141 29.630 0.00 0.00 0.00 2.57
2348 2845 7.951530 AACATGAACTGGAAATGAAATCAAC 57.048 32.000 0.00 0.00 0.00 3.18
2349 2846 7.053316 ACATGAACTGGAAATGAAATCAACA 57.947 32.000 0.00 0.00 0.00 3.33
2352 2849 8.828644 CATGAACTGGAAATGAAATCAACAAAA 58.171 29.630 0.00 0.00 0.00 2.44
2353 2850 8.195617 TGAACTGGAAATGAAATCAACAAAAC 57.804 30.769 0.00 0.00 0.00 2.43
2354 2851 7.821359 TGAACTGGAAATGAAATCAACAAAACA 59.179 29.630 0.00 0.00 0.00 2.83
2355 2852 7.775397 ACTGGAAATGAAATCAACAAAACAG 57.225 32.000 0.00 0.00 0.00 3.16
2363 2861 8.638685 ATGAAATCAACAAAACAGAAGAACAG 57.361 30.769 0.00 0.00 0.00 3.16
2369 2867 6.599244 TCAACAAAACAGAAGAACAGACATCT 59.401 34.615 0.00 0.00 0.00 2.90
2434 2938 1.164411 TGGCAAGTTATTCACAGCGG 58.836 50.000 0.00 0.00 31.28 5.52
2435 2939 0.451783 GGCAAGTTATTCACAGCGGG 59.548 55.000 0.00 0.00 31.28 6.13
2436 2940 1.448985 GCAAGTTATTCACAGCGGGA 58.551 50.000 0.00 0.00 0.00 5.14
2437 2941 1.130561 GCAAGTTATTCACAGCGGGAC 59.869 52.381 0.00 0.00 0.00 4.46
2443 2970 0.179032 ATTCACAGCGGGACACACAA 60.179 50.000 0.00 0.00 0.00 3.33
2515 3050 0.107066 TGGCGGCATTCATCAGTGAT 60.107 50.000 7.97 0.00 33.56 3.06
2536 3071 0.103208 GCCGCAGCTATGTACAGACT 59.897 55.000 0.33 0.00 35.50 3.24
2540 3075 2.159379 CGCAGCTATGTACAGACTGACA 60.159 50.000 20.69 9.58 0.00 3.58
2598 3136 2.826488 ACTGACTGAGCTAACCATCCT 58.174 47.619 0.00 0.00 0.00 3.24
2684 3226 4.121669 GCGTCGCTCAGCTCCTCA 62.122 66.667 10.68 0.00 0.00 3.86
2687 3229 1.812525 GTCGCTCAGCTCCTCATCA 59.187 57.895 0.00 0.00 0.00 3.07
2699 3247 2.175499 CTCCTCATCACTCTCCTCCTCT 59.825 54.545 0.00 0.00 0.00 3.69
2708 3259 1.852965 CTCTCCTCCTCTTCCTCCTCT 59.147 57.143 0.00 0.00 0.00 3.69
2717 3268 3.338214 CCTCTTCCTCCTCTGGGGATATA 59.662 52.174 0.00 0.00 44.15 0.86
2760 3311 8.303780 TCTCTCACAATATTCTGAACAGAGAT 57.696 34.615 4.72 5.14 38.88 2.75
2799 3355 7.919091 TGTTAAGGAAATACTATAGTGCACTCG 59.081 37.037 25.56 15.40 0.00 4.18
2806 3362 6.825944 ATACTATAGTGCACTCGATGACAT 57.174 37.500 25.56 11.99 0.00 3.06
2980 3536 2.211250 ATTCACAAGGTCTGCAGCAT 57.789 45.000 9.47 0.00 0.00 3.79
3015 3581 3.854784 GCAGAAATGTGGTGCTTCAGTTC 60.855 47.826 0.00 0.00 38.41 3.01
3016 3582 3.316029 CAGAAATGTGGTGCTTCAGTTCA 59.684 43.478 7.78 0.00 39.86 3.18
3017 3583 3.567164 AGAAATGTGGTGCTTCAGTTCAG 59.433 43.478 7.78 0.00 39.86 3.02
3018 3584 2.645838 ATGTGGTGCTTCAGTTCAGT 57.354 45.000 0.00 0.00 0.00 3.41
3019 3585 2.418368 TGTGGTGCTTCAGTTCAGTT 57.582 45.000 0.00 0.00 0.00 3.16
3020 3586 3.552132 TGTGGTGCTTCAGTTCAGTTA 57.448 42.857 0.00 0.00 0.00 2.24
3021 3587 3.466836 TGTGGTGCTTCAGTTCAGTTAG 58.533 45.455 0.00 0.00 0.00 2.34
3022 3588 3.118408 TGTGGTGCTTCAGTTCAGTTAGT 60.118 43.478 0.00 0.00 0.00 2.24
3023 3589 4.100344 TGTGGTGCTTCAGTTCAGTTAGTA 59.900 41.667 0.00 0.00 0.00 1.82
3024 3590 5.054477 GTGGTGCTTCAGTTCAGTTAGTAA 58.946 41.667 0.00 0.00 0.00 2.24
3025 3591 5.526111 GTGGTGCTTCAGTTCAGTTAGTAAA 59.474 40.000 0.00 0.00 0.00 2.01
3026 3592 6.037830 GTGGTGCTTCAGTTCAGTTAGTAAAA 59.962 38.462 0.00 0.00 0.00 1.52
3027 3593 6.600032 TGGTGCTTCAGTTCAGTTAGTAAAAA 59.400 34.615 0.00 0.00 0.00 1.94
3047 3613 3.089788 GACACAAAGTCAACGGGGT 57.910 52.632 0.00 0.00 46.77 4.95
3048 3614 0.942252 GACACAAAGTCAACGGGGTC 59.058 55.000 0.00 0.00 46.77 4.46
3049 3615 0.812412 ACACAAAGTCAACGGGGTCG 60.812 55.000 0.00 0.00 43.02 4.79
3050 3616 1.227734 ACAAAGTCAACGGGGTCGG 60.228 57.895 0.00 0.00 41.39 4.79
3051 3617 1.070105 CAAAGTCAACGGGGTCGGA 59.930 57.895 0.00 0.00 41.39 4.55
3052 3618 1.070275 AAAGTCAACGGGGTCGGAC 59.930 57.895 0.00 0.00 41.39 4.79
3053 3619 1.688269 AAAGTCAACGGGGTCGGACA 61.688 55.000 10.76 0.00 41.39 4.02
3054 3620 2.356673 GTCAACGGGGTCGGACAC 60.357 66.667 10.76 6.08 41.39 3.67
3055 3621 3.980989 TCAACGGGGTCGGACACG 61.981 66.667 18.61 18.61 41.39 4.49
3056 3622 4.289245 CAACGGGGTCGGACACGT 62.289 66.667 19.70 19.70 41.88 4.49
3057 3623 2.597217 AACGGGGTCGGACACGTA 60.597 61.111 23.65 0.00 38.79 3.57
3058 3624 2.199652 AACGGGGTCGGACACGTAA 61.200 57.895 23.65 0.00 38.79 3.18
3059 3625 1.743321 AACGGGGTCGGACACGTAAA 61.743 55.000 23.65 0.00 38.79 2.01
3060 3626 1.006337 CGGGGTCGGACACGTAAAA 60.006 57.895 10.76 0.00 41.85 1.52
3061 3627 0.599728 CGGGGTCGGACACGTAAAAA 60.600 55.000 10.76 0.00 41.85 1.94
3062 3628 1.812235 GGGGTCGGACACGTAAAAAT 58.188 50.000 10.76 0.00 41.85 1.82
3063 3629 2.673610 CGGGGTCGGACACGTAAAAATA 60.674 50.000 10.76 0.00 41.85 1.40
3064 3630 3.534554 GGGGTCGGACACGTAAAAATAT 58.465 45.455 10.76 0.00 41.85 1.28
3065 3631 3.940852 GGGGTCGGACACGTAAAAATATT 59.059 43.478 10.76 0.00 41.85 1.28
3066 3632 5.115480 GGGGTCGGACACGTAAAAATATTA 58.885 41.667 10.76 0.00 41.85 0.98
3067 3633 5.584251 GGGGTCGGACACGTAAAAATATTAA 59.416 40.000 10.76 0.00 41.85 1.40
3068 3634 6.456853 GGGGTCGGACACGTAAAAATATTAAC 60.457 42.308 10.76 0.00 41.85 2.01
3069 3635 6.177822 GGTCGGACACGTAAAAATATTAACG 58.822 40.000 10.76 13.36 41.85 3.18
3070 3636 6.034470 GGTCGGACACGTAAAAATATTAACGA 59.966 38.462 18.99 0.00 41.85 3.85
3071 3637 7.106755 GTCGGACACGTAAAAATATTAACGAG 58.893 38.462 18.99 14.97 41.85 4.18
3072 3638 5.892648 CGGACACGTAAAAATATTAACGAGC 59.107 40.000 18.99 10.50 38.64 5.03
3073 3639 6.454054 CGGACACGTAAAAATATTAACGAGCA 60.454 38.462 18.99 0.00 38.64 4.26
3074 3640 7.235777 GGACACGTAAAAATATTAACGAGCAA 58.764 34.615 18.99 0.00 38.64 3.91
3075 3641 7.906527 GGACACGTAAAAATATTAACGAGCAAT 59.093 33.333 18.99 2.58 38.64 3.56
3076 3642 9.904647 GACACGTAAAAATATTAACGAGCAATA 57.095 29.630 18.99 0.00 38.64 1.90
3077 3643 9.910511 ACACGTAAAAATATTAACGAGCAATAG 57.089 29.630 18.99 7.07 38.64 1.73
3078 3644 8.879299 CACGTAAAAATATTAACGAGCAATAGC 58.121 33.333 18.99 0.00 38.64 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.143631 CATCTCGATATTATACATGCTCACAAA 57.856 33.333 0.00 0.00 0.00 2.83
5 6 8.306761 ACATCTCGATATTATACATGCTCACAA 58.693 33.333 0.00 0.00 0.00 3.33
8 9 8.956426 TGTACATCTCGATATTATACATGCTCA 58.044 33.333 0.00 0.00 0.00 4.26
9 10 9.227490 GTGTACATCTCGATATTATACATGCTC 57.773 37.037 0.00 0.00 0.00 4.26
10 11 7.910683 CGTGTACATCTCGATATTATACATGCT 59.089 37.037 0.00 0.00 35.42 3.79
11 12 7.305475 GCGTGTACATCTCGATATTATACATGC 60.305 40.741 21.25 21.25 43.08 4.06
12 13 7.165977 GGCGTGTACATCTCGATATTATACATG 59.834 40.741 8.39 14.21 35.42 3.21
13 14 7.148137 TGGCGTGTACATCTCGATATTATACAT 60.148 37.037 8.39 0.00 35.42 2.29
14 15 6.149807 TGGCGTGTACATCTCGATATTATACA 59.850 38.462 8.39 0.00 35.42 2.29
15 16 6.549061 TGGCGTGTACATCTCGATATTATAC 58.451 40.000 8.39 0.00 35.42 1.47
16 17 6.746745 TGGCGTGTACATCTCGATATTATA 57.253 37.500 8.39 0.00 35.42 0.98
17 18 5.638596 TGGCGTGTACATCTCGATATTAT 57.361 39.130 8.39 0.00 35.42 1.28
18 19 5.441709 TTGGCGTGTACATCTCGATATTA 57.558 39.130 8.39 0.00 35.42 0.98
19 20 4.316205 TTGGCGTGTACATCTCGATATT 57.684 40.909 8.39 0.00 35.42 1.28
20 21 4.521130 ATTGGCGTGTACATCTCGATAT 57.479 40.909 8.39 0.00 35.42 1.63
21 22 4.316205 AATTGGCGTGTACATCTCGATA 57.684 40.909 8.39 0.00 35.42 2.92
22 23 2.890808 ATTGGCGTGTACATCTCGAT 57.109 45.000 8.39 0.05 35.42 3.59
23 24 2.665649 AATTGGCGTGTACATCTCGA 57.334 45.000 8.39 0.00 35.42 4.04
24 25 3.740044 AAAATTGGCGTGTACATCTCG 57.260 42.857 0.00 0.00 36.33 4.04
75 76 8.507249 CCTGGTTTTTAAAATGTGTTTTGAACA 58.493 29.630 0.55 0.00 38.01 3.18
76 77 8.722394 TCCTGGTTTTTAAAATGTGTTTTGAAC 58.278 29.630 0.55 0.00 38.01 3.18
77 78 8.848474 TCCTGGTTTTTAAAATGTGTTTTGAA 57.152 26.923 0.55 0.00 38.01 2.69
78 79 7.065204 GCTCCTGGTTTTTAAAATGTGTTTTGA 59.935 33.333 0.55 0.00 38.01 2.69
79 80 7.186128 GCTCCTGGTTTTTAAAATGTGTTTTG 58.814 34.615 0.55 0.00 38.01 2.44
80 81 6.036626 CGCTCCTGGTTTTTAAAATGTGTTTT 59.963 34.615 0.55 0.00 40.48 2.43
81 82 5.522097 CGCTCCTGGTTTTTAAAATGTGTTT 59.478 36.000 0.55 0.00 0.00 2.83
82 83 5.047188 CGCTCCTGGTTTTTAAAATGTGTT 58.953 37.500 0.55 0.00 0.00 3.32
83 84 4.616953 CGCTCCTGGTTTTTAAAATGTGT 58.383 39.130 0.55 0.00 0.00 3.72
84 85 3.428534 GCGCTCCTGGTTTTTAAAATGTG 59.571 43.478 0.00 0.00 0.00 3.21
85 86 3.649073 GCGCTCCTGGTTTTTAAAATGT 58.351 40.909 0.00 0.00 0.00 2.71
86 87 2.661195 CGCGCTCCTGGTTTTTAAAATG 59.339 45.455 5.56 0.00 0.00 2.32
87 88 2.295070 ACGCGCTCCTGGTTTTTAAAAT 59.705 40.909 5.73 0.00 0.00 1.82
88 89 1.677052 ACGCGCTCCTGGTTTTTAAAA 59.323 42.857 5.73 0.00 0.00 1.52
89 90 1.002251 CACGCGCTCCTGGTTTTTAAA 60.002 47.619 5.73 0.00 0.00 1.52
90 91 0.589223 CACGCGCTCCTGGTTTTTAA 59.411 50.000 5.73 0.00 0.00 1.52
91 92 1.847890 GCACGCGCTCCTGGTTTTTA 61.848 55.000 5.73 0.00 34.30 1.52
92 93 3.030652 CACGCGCTCCTGGTTTTT 58.969 55.556 5.73 0.00 0.00 1.94
93 94 3.660111 GCACGCGCTCCTGGTTTT 61.660 61.111 5.73 0.00 34.30 2.43
106 107 1.804396 TTTTGGCACATGGGAGCACG 61.804 55.000 0.00 0.00 39.30 5.34
107 108 0.319813 GTTTTGGCACATGGGAGCAC 60.320 55.000 0.00 0.00 39.30 4.40
108 109 1.804396 CGTTTTGGCACATGGGAGCA 61.804 55.000 0.00 0.00 39.30 4.26
109 110 1.080569 CGTTTTGGCACATGGGAGC 60.081 57.895 0.00 0.00 39.30 4.70
110 111 0.240945 GACGTTTTGGCACATGGGAG 59.759 55.000 0.00 0.00 39.30 4.30
111 112 0.466372 TGACGTTTTGGCACATGGGA 60.466 50.000 0.00 0.00 39.30 4.37
112 113 0.318614 GTGACGTTTTGGCACATGGG 60.319 55.000 0.00 0.00 39.30 4.00
113 114 0.667993 AGTGACGTTTTGGCACATGG 59.332 50.000 3.42 0.00 39.30 3.66
114 115 1.603802 AGAGTGACGTTTTGGCACATG 59.396 47.619 3.42 0.00 39.30 3.21
115 116 1.873591 GAGAGTGACGTTTTGGCACAT 59.126 47.619 3.42 0.00 39.30 3.21
116 117 1.134521 AGAGAGTGACGTTTTGGCACA 60.135 47.619 3.42 0.00 35.08 4.57
117 118 1.583054 AGAGAGTGACGTTTTGGCAC 58.417 50.000 0.00 0.00 0.00 5.01
118 119 2.325583 AAGAGAGTGACGTTTTGGCA 57.674 45.000 0.00 0.00 0.00 4.92
119 120 4.213482 ACAATAAGAGAGTGACGTTTTGGC 59.787 41.667 0.00 0.00 0.00 4.52
120 121 5.924475 ACAATAAGAGAGTGACGTTTTGG 57.076 39.130 0.00 0.00 0.00 3.28
121 122 7.381408 TGTCTACAATAAGAGAGTGACGTTTTG 59.619 37.037 0.00 0.00 0.00 2.44
122 123 7.431249 TGTCTACAATAAGAGAGTGACGTTTT 58.569 34.615 0.00 0.00 0.00 2.43
123 124 6.978338 TGTCTACAATAAGAGAGTGACGTTT 58.022 36.000 0.00 0.00 0.00 3.60
124 125 6.570672 TGTCTACAATAAGAGAGTGACGTT 57.429 37.500 0.00 0.00 0.00 3.99
125 126 6.761099 ATGTCTACAATAAGAGAGTGACGT 57.239 37.500 0.00 0.00 0.00 4.34
126 127 7.921787 AGTATGTCTACAATAAGAGAGTGACG 58.078 38.462 0.00 0.00 0.00 4.35
192 193 7.201644 GGGCATGTATAATGATTGATAAGACCG 60.202 40.741 0.00 0.00 0.00 4.79
193 194 7.831193 AGGGCATGTATAATGATTGATAAGACC 59.169 37.037 0.00 0.00 0.00 3.85
607 610 5.646360 TCAGTTTAGCTAATGGTAAGTTGCC 59.354 40.000 7.08 2.51 37.44 4.52
631 634 5.585390 CAAATTTGGCGAGATTATGAGCTT 58.415 37.500 10.49 0.00 0.00 3.74
632 635 4.498682 GCAAATTTGGCGAGATTATGAGCT 60.499 41.667 19.47 0.00 0.00 4.09
633 636 3.732721 GCAAATTTGGCGAGATTATGAGC 59.267 43.478 19.47 0.00 0.00 4.26
634 637 5.179045 AGCAAATTTGGCGAGATTATGAG 57.821 39.130 19.47 0.00 36.08 2.90
635 638 5.342433 CAAGCAAATTTGGCGAGATTATGA 58.658 37.500 19.47 0.00 36.08 2.15
636 639 4.026310 GCAAGCAAATTTGGCGAGATTATG 60.026 41.667 19.47 6.77 36.08 1.90
637 640 4.114794 GCAAGCAAATTTGGCGAGATTAT 58.885 39.130 19.47 0.00 36.08 1.28
638 641 3.056962 TGCAAGCAAATTTGGCGAGATTA 60.057 39.130 19.47 0.00 36.08 1.75
639 642 2.288948 TGCAAGCAAATTTGGCGAGATT 60.289 40.909 19.47 0.00 36.08 2.40
640 643 1.273048 TGCAAGCAAATTTGGCGAGAT 59.727 42.857 19.47 0.00 36.08 2.75
641 644 0.672889 TGCAAGCAAATTTGGCGAGA 59.327 45.000 19.47 0.00 36.08 4.04
642 645 1.192980 GTTGCAAGCAAATTTGGCGAG 59.807 47.619 19.47 10.36 37.70 5.03
643 646 1.216122 GTTGCAAGCAAATTTGGCGA 58.784 45.000 19.47 11.30 37.70 5.54
644 647 0.235404 GGTTGCAAGCAAATTTGGCG 59.765 50.000 23.18 0.00 37.70 5.69
645 648 1.596603 AGGTTGCAAGCAAATTTGGC 58.403 45.000 28.75 14.33 37.70 4.52
646 649 4.255833 TCTAGGTTGCAAGCAAATTTGG 57.744 40.909 28.75 11.11 37.70 3.28
647 650 7.864379 CCTATATCTAGGTTGCAAGCAAATTTG 59.136 37.037 28.75 14.03 39.89 2.32
648 651 7.945134 CCTATATCTAGGTTGCAAGCAAATTT 58.055 34.615 28.75 15.65 39.89 1.82
649 652 7.516198 CCTATATCTAGGTTGCAAGCAAATT 57.484 36.000 28.75 11.95 39.89 1.82
663 666 9.698309 CAACCAAACATGTCTACCTATATCTAG 57.302 37.037 0.00 0.00 0.00 2.43
664 667 8.647796 CCAACCAAACATGTCTACCTATATCTA 58.352 37.037 0.00 0.00 0.00 1.98
665 668 7.420214 CCCAACCAAACATGTCTACCTATATCT 60.420 40.741 0.00 0.00 0.00 1.98
666 669 6.710744 CCCAACCAAACATGTCTACCTATATC 59.289 42.308 0.00 0.00 0.00 1.63
667 670 6.601332 CCCAACCAAACATGTCTACCTATAT 58.399 40.000 0.00 0.00 0.00 0.86
668 671 5.630539 GCCCAACCAAACATGTCTACCTATA 60.631 44.000 0.00 0.00 0.00 1.31
669 672 4.855340 CCCAACCAAACATGTCTACCTAT 58.145 43.478 0.00 0.00 0.00 2.57
670 673 3.560453 GCCCAACCAAACATGTCTACCTA 60.560 47.826 0.00 0.00 0.00 3.08
671 674 2.817839 GCCCAACCAAACATGTCTACCT 60.818 50.000 0.00 0.00 0.00 3.08
672 675 1.544246 GCCCAACCAAACATGTCTACC 59.456 52.381 0.00 0.00 0.00 3.18
673 676 2.235016 TGCCCAACCAAACATGTCTAC 58.765 47.619 0.00 0.00 0.00 2.59
674 677 2.666272 TGCCCAACCAAACATGTCTA 57.334 45.000 0.00 0.00 0.00 2.59
675 678 1.786937 TTGCCCAACCAAACATGTCT 58.213 45.000 0.00 0.00 0.00 3.41
676 679 2.612721 GGATTGCCCAACCAAACATGTC 60.613 50.000 0.00 0.00 34.14 3.06
677 680 1.347378 GGATTGCCCAACCAAACATGT 59.653 47.619 0.00 0.00 34.14 3.21
678 681 1.624813 AGGATTGCCCAACCAAACATG 59.375 47.619 0.00 0.00 37.41 3.21
679 682 1.901833 GAGGATTGCCCAACCAAACAT 59.098 47.619 0.00 0.00 37.41 2.71
680 683 1.337118 GAGGATTGCCCAACCAAACA 58.663 50.000 0.00 0.00 37.41 2.83
681 684 1.337118 TGAGGATTGCCCAACCAAAC 58.663 50.000 0.00 0.00 37.41 2.93
682 685 1.901159 CATGAGGATTGCCCAACCAAA 59.099 47.619 0.00 0.00 37.41 3.28
683 686 1.076841 TCATGAGGATTGCCCAACCAA 59.923 47.619 0.00 0.00 37.41 3.67
684 687 0.703488 TCATGAGGATTGCCCAACCA 59.297 50.000 0.00 0.00 37.41 3.67
685 688 1.959282 GATCATGAGGATTGCCCAACC 59.041 52.381 0.09 0.00 36.00 3.77
686 689 1.959282 GGATCATGAGGATTGCCCAAC 59.041 52.381 0.09 0.00 36.00 3.77
687 690 1.133388 GGGATCATGAGGATTGCCCAA 60.133 52.381 0.09 0.00 39.05 4.12
688 691 0.479815 GGGATCATGAGGATTGCCCA 59.520 55.000 0.09 0.00 39.05 5.36
689 692 0.607489 CGGGATCATGAGGATTGCCC 60.607 60.000 0.09 4.25 36.91 5.36
690 693 0.397941 TCGGGATCATGAGGATTGCC 59.602 55.000 0.09 0.00 36.00 4.52
691 694 2.027377 AGATCGGGATCATGAGGATTGC 60.027 50.000 11.00 0.00 40.22 3.56
692 695 3.977134 AGATCGGGATCATGAGGATTG 57.023 47.619 11.00 0.00 40.22 2.67
693 696 3.649981 ACAAGATCGGGATCATGAGGATT 59.350 43.478 17.79 0.00 38.42 3.01
694 697 3.246301 ACAAGATCGGGATCATGAGGAT 58.754 45.455 17.79 1.38 38.42 3.24
695 698 2.682594 ACAAGATCGGGATCATGAGGA 58.317 47.619 17.79 0.00 38.42 3.71
696 699 3.306364 GGTACAAGATCGGGATCATGAGG 60.306 52.174 17.79 3.26 38.42 3.86
697 700 3.576118 AGGTACAAGATCGGGATCATGAG 59.424 47.826 17.79 5.01 38.42 2.90
698 701 3.576861 AGGTACAAGATCGGGATCATGA 58.423 45.455 17.79 0.00 38.42 3.07
699 702 5.185828 TCATAGGTACAAGATCGGGATCATG 59.814 44.000 11.00 11.12 41.00 3.07
700 703 5.186021 GTCATAGGTACAAGATCGGGATCAT 59.814 44.000 11.00 0.00 40.22 2.45
701 704 4.523173 GTCATAGGTACAAGATCGGGATCA 59.477 45.833 11.00 0.00 40.22 2.92
702 705 4.523173 TGTCATAGGTACAAGATCGGGATC 59.477 45.833 0.31 0.31 38.09 3.36
703 706 4.480115 TGTCATAGGTACAAGATCGGGAT 58.520 43.478 0.00 0.00 0.00 3.85
704 707 3.905968 TGTCATAGGTACAAGATCGGGA 58.094 45.455 0.00 0.00 0.00 5.14
705 708 4.665833 TTGTCATAGGTACAAGATCGGG 57.334 45.455 0.00 0.00 33.13 5.14
706 709 5.050091 GCAATTGTCATAGGTACAAGATCGG 60.050 44.000 7.40 0.00 40.00 4.18
707 710 5.755375 AGCAATTGTCATAGGTACAAGATCG 59.245 40.000 7.40 0.00 40.00 3.69
708 711 7.497249 AGAAGCAATTGTCATAGGTACAAGATC 59.503 37.037 7.40 0.00 40.00 2.75
709 712 7.281774 CAGAAGCAATTGTCATAGGTACAAGAT 59.718 37.037 7.40 0.00 40.00 2.40
710 713 6.595326 CAGAAGCAATTGTCATAGGTACAAGA 59.405 38.462 7.40 0.00 40.00 3.02
711 714 6.595326 TCAGAAGCAATTGTCATAGGTACAAG 59.405 38.462 7.40 0.00 40.00 3.16
712 715 6.472016 TCAGAAGCAATTGTCATAGGTACAA 58.528 36.000 7.40 0.00 40.85 2.41
713 716 6.048732 TCAGAAGCAATTGTCATAGGTACA 57.951 37.500 7.40 0.00 0.00 2.90
714 717 6.985188 TTCAGAAGCAATTGTCATAGGTAC 57.015 37.500 7.40 0.00 0.00 3.34
715 718 9.679661 TTTATTCAGAAGCAATTGTCATAGGTA 57.320 29.630 7.40 0.00 0.00 3.08
716 719 8.579850 TTTATTCAGAAGCAATTGTCATAGGT 57.420 30.769 7.40 0.00 0.00 3.08
721 724 9.357652 GCTTTATTTATTCAGAAGCAATTGTCA 57.642 29.630 7.40 0.00 41.64 3.58
722 725 9.357652 TGCTTTATTTATTCAGAAGCAATTGTC 57.642 29.630 7.40 0.00 46.66 3.18
729 732 4.972440 CGCCTGCTTTATTTATTCAGAAGC 59.028 41.667 0.00 0.00 42.19 3.86
730 733 6.258727 TCTCGCCTGCTTTATTTATTCAGAAG 59.741 38.462 0.00 0.00 0.00 2.85
731 734 6.112734 TCTCGCCTGCTTTATTTATTCAGAA 58.887 36.000 0.00 0.00 0.00 3.02
732 735 5.670485 TCTCGCCTGCTTTATTTATTCAGA 58.330 37.500 0.00 0.00 0.00 3.27
733 736 5.991328 TCTCGCCTGCTTTATTTATTCAG 57.009 39.130 0.00 0.00 0.00 3.02
734 737 6.942532 ATTCTCGCCTGCTTTATTTATTCA 57.057 33.333 0.00 0.00 0.00 2.57
735 738 7.643579 AGAATTCTCGCCTGCTTTATTTATTC 58.356 34.615 0.88 0.00 0.00 1.75
736 739 7.283127 TGAGAATTCTCGCCTGCTTTATTTATT 59.717 33.333 26.32 0.00 45.72 1.40
737 740 6.767902 TGAGAATTCTCGCCTGCTTTATTTAT 59.232 34.615 26.32 0.00 45.72 1.40
738 741 6.112734 TGAGAATTCTCGCCTGCTTTATTTA 58.887 36.000 26.32 4.87 45.72 1.40
739 742 4.943705 TGAGAATTCTCGCCTGCTTTATTT 59.056 37.500 26.32 0.00 45.72 1.40
740 743 4.517285 TGAGAATTCTCGCCTGCTTTATT 58.483 39.130 26.32 0.00 45.72 1.40
741 744 4.142609 TGAGAATTCTCGCCTGCTTTAT 57.857 40.909 26.32 0.00 45.72 1.40
742 745 3.610040 TGAGAATTCTCGCCTGCTTTA 57.390 42.857 26.32 6.61 45.72 1.85
743 746 2.479566 TGAGAATTCTCGCCTGCTTT 57.520 45.000 26.32 0.00 45.72 3.51
744 747 2.479566 TTGAGAATTCTCGCCTGCTT 57.520 45.000 26.32 0.00 45.72 3.91
745 748 2.479566 TTTGAGAATTCTCGCCTGCT 57.520 45.000 26.32 0.00 45.72 4.24
746 749 3.559238 TTTTTGAGAATTCTCGCCTGC 57.441 42.857 26.32 6.78 45.72 4.85
768 771 9.244799 GTACAAATAACTGCAGTTTAGCTTTTT 57.755 29.630 35.20 22.05 39.31 1.94
769 772 8.630037 AGTACAAATAACTGCAGTTTAGCTTTT 58.370 29.630 35.20 22.07 39.31 2.27
770 773 8.166422 AGTACAAATAACTGCAGTTTAGCTTT 57.834 30.769 35.20 24.02 39.31 3.51
771 774 7.094762 GGAGTACAAATAACTGCAGTTTAGCTT 60.095 37.037 35.20 20.32 39.31 3.74
772 775 6.371825 GGAGTACAAATAACTGCAGTTTAGCT 59.628 38.462 35.20 21.83 39.31 3.32
773 776 6.403309 GGGAGTACAAATAACTGCAGTTTAGC 60.403 42.308 35.20 18.17 37.06 3.09
774 777 6.183360 CGGGAGTACAAATAACTGCAGTTTAG 60.183 42.308 35.20 23.21 37.06 1.85
775 778 5.640357 CGGGAGTACAAATAACTGCAGTTTA 59.360 40.000 35.20 19.14 37.06 2.01
776 779 4.454504 CGGGAGTACAAATAACTGCAGTTT 59.545 41.667 35.20 20.18 37.06 2.66
777 780 4.000988 CGGGAGTACAAATAACTGCAGTT 58.999 43.478 32.97 32.97 37.06 3.16
778 781 3.596214 CGGGAGTACAAATAACTGCAGT 58.404 45.455 15.25 15.25 37.06 4.40
779 782 2.351726 GCGGGAGTACAAATAACTGCAG 59.648 50.000 13.48 13.48 37.06 4.41
780 783 2.027561 AGCGGGAGTACAAATAACTGCA 60.028 45.455 0.00 0.00 37.06 4.41
781 784 2.629051 AGCGGGAGTACAAATAACTGC 58.371 47.619 0.00 0.00 34.82 4.40
867 880 8.733458 TCAGTAAAATCATCAAACAGAATCTGG 58.267 33.333 15.38 0.00 35.51 3.86
898 911 7.022055 ACACTTCAACGTCTGATATCTAGAG 57.978 40.000 3.98 0.00 32.78 2.43
899 912 7.551617 TGTACACTTCAACGTCTGATATCTAGA 59.448 37.037 3.98 0.00 32.78 2.43
900 913 7.640630 GTGTACACTTCAACGTCTGATATCTAG 59.359 40.741 18.92 0.40 32.78 2.43
901 914 7.470079 GTGTACACTTCAACGTCTGATATCTA 58.530 38.462 18.92 0.00 32.78 1.98
902 915 6.323266 GTGTACACTTCAACGTCTGATATCT 58.677 40.000 18.92 0.00 32.78 1.98
903 916 5.227391 CGTGTACACTTCAACGTCTGATATC 59.773 44.000 23.01 0.00 32.78 1.63
905 918 4.469552 CGTGTACACTTCAACGTCTGATA 58.530 43.478 23.01 0.00 32.78 2.15
909 1251 1.677576 TCCGTGTACACTTCAACGTCT 59.322 47.619 23.01 0.00 0.00 4.18
918 1260 1.119574 ACCAGCCTTCCGTGTACACT 61.120 55.000 23.01 0.00 0.00 3.55
982 1324 3.192212 GCCATGGATTATTGGAGCTAAGC 59.808 47.826 18.40 0.00 0.00 3.09
983 1325 3.760684 GGCCATGGATTATTGGAGCTAAG 59.239 47.826 18.40 0.00 0.00 2.18
984 1326 3.398967 AGGCCATGGATTATTGGAGCTAA 59.601 43.478 18.40 0.00 0.00 3.09
1320 1724 4.735132 TCCTCGTTGAAGCGCCGG 62.735 66.667 2.29 0.00 0.00 6.13
1810 2220 2.899838 GTTCACCACCAGCGCACA 60.900 61.111 11.47 0.00 0.00 4.57
1812 2222 4.539083 ACGTTCACCACCAGCGCA 62.539 61.111 11.47 0.00 0.00 6.09
1833 2243 2.103373 GACAGGATCTGCAGGTAGTCA 58.897 52.381 15.13 0.00 34.37 3.41
2097 2531 8.373981 ACTTAGATACATTCAGATTGGATGAGG 58.626 37.037 4.41 0.00 0.00 3.86
2136 2602 9.991906 AATCTGAATCATGAACACAAGATTTTT 57.008 25.926 0.00 0.00 33.89 1.94
2137 2603 9.635520 GAATCTGAATCATGAACACAAGATTTT 57.364 29.630 16.79 0.00 33.89 1.82
2139 2605 7.120285 ACGAATCTGAATCATGAACACAAGATT 59.880 33.333 16.16 16.16 35.58 2.40
2166 2649 7.764141 TTGAATCATCAGTTCAGATCCAAAA 57.236 32.000 0.00 0.00 36.96 2.44
2227 2715 4.846779 TCGAATTTCCACCCTTCAAAAG 57.153 40.909 0.00 0.00 0.00 2.27
2246 2740 1.063616 CTGCATGTCCAGCTGAATTCG 59.936 52.381 17.39 1.39 33.39 3.34
2293 2787 5.853572 ATGTTTCCCTTTCCTACCTGTAA 57.146 39.130 0.00 0.00 0.00 2.41
2294 2788 5.786457 TGTATGTTTCCCTTTCCTACCTGTA 59.214 40.000 0.00 0.00 0.00 2.74
2295 2789 4.600111 TGTATGTTTCCCTTTCCTACCTGT 59.400 41.667 0.00 0.00 0.00 4.00
2296 2790 5.174037 TGTATGTTTCCCTTTCCTACCTG 57.826 43.478 0.00 0.00 0.00 4.00
2298 2792 5.175388 ACTGTATGTTTCCCTTTCCTACC 57.825 43.478 0.00 0.00 0.00 3.18
2299 2793 6.944096 ACTACTGTATGTTTCCCTTTCCTAC 58.056 40.000 0.00 0.00 0.00 3.18
2300 2794 8.534496 GTTACTACTGTATGTTTCCCTTTCCTA 58.466 37.037 0.00 0.00 0.00 2.94
2301 2795 7.016858 TGTTACTACTGTATGTTTCCCTTTCCT 59.983 37.037 0.00 0.00 0.00 3.36
2302 2796 7.163441 TGTTACTACTGTATGTTTCCCTTTCC 58.837 38.462 0.00 0.00 0.00 3.13
2303 2797 8.665685 CATGTTACTACTGTATGTTTCCCTTTC 58.334 37.037 0.00 0.00 0.00 2.62
2305 2799 7.913789 TCATGTTACTACTGTATGTTTCCCTT 58.086 34.615 0.00 0.00 0.00 3.95
2308 2802 8.656849 CAGTTCATGTTACTACTGTATGTTTCC 58.343 37.037 0.00 0.00 34.68 3.13
2309 2803 8.656849 CCAGTTCATGTTACTACTGTATGTTTC 58.343 37.037 0.00 0.00 37.01 2.78
2311 2805 7.903145 TCCAGTTCATGTTACTACTGTATGTT 58.097 34.615 0.00 0.00 37.01 2.71
2335 2832 9.906111 GTTCTTCTGTTTTGTTGATTTCATTTC 57.094 29.630 0.00 0.00 0.00 2.17
2343 2840 6.757897 TGTCTGTTCTTCTGTTTTGTTGAT 57.242 33.333 0.00 0.00 0.00 2.57
2345 2842 6.789262 AGATGTCTGTTCTTCTGTTTTGTTG 58.211 36.000 0.00 0.00 0.00 3.33
2347 2844 5.529060 GGAGATGTCTGTTCTTCTGTTTTGT 59.471 40.000 0.00 0.00 0.00 2.83
2348 2845 5.762218 AGGAGATGTCTGTTCTTCTGTTTTG 59.238 40.000 0.00 0.00 27.48 2.44
2349 2846 5.934781 AGGAGATGTCTGTTCTTCTGTTTT 58.065 37.500 0.00 0.00 27.48 2.43
2352 2849 5.575157 TCTAGGAGATGTCTGTTCTTCTGT 58.425 41.667 0.00 0.00 31.37 3.41
2353 2850 6.522625 TTCTAGGAGATGTCTGTTCTTCTG 57.477 41.667 0.00 0.00 31.37 3.02
2354 2851 6.098124 CCATTCTAGGAGATGTCTGTTCTTCT 59.902 42.308 0.00 0.00 33.52 2.85
2355 2852 6.097554 TCCATTCTAGGAGATGTCTGTTCTTC 59.902 42.308 0.00 0.00 32.77 2.87
2363 2861 6.586344 TCATGTTTCCATTCTAGGAGATGTC 58.414 40.000 0.00 0.00 39.25 3.06
2369 2867 4.943705 GCAGTTCATGTTTCCATTCTAGGA 59.056 41.667 0.00 0.00 35.41 2.94
2434 2938 3.654414 CTCCACTAGTTCTTGTGTGTCC 58.346 50.000 11.80 0.00 32.76 4.02
2435 2939 3.060602 GCTCCACTAGTTCTTGTGTGTC 58.939 50.000 11.80 0.07 32.76 3.67
2436 2940 2.700897 AGCTCCACTAGTTCTTGTGTGT 59.299 45.455 11.80 0.00 32.76 3.72
2437 2941 3.062763 CAGCTCCACTAGTTCTTGTGTG 58.937 50.000 11.80 6.85 32.76 3.82
2443 2970 3.501349 TCAACTCAGCTCCACTAGTTCT 58.499 45.455 0.00 0.00 29.93 3.01
2515 3050 1.065764 CTGTACATAGCTGCGGCGA 59.934 57.895 12.98 7.50 44.37 5.54
2536 3071 6.548622 TGATCATGATGTATCTCTGTCTGTCA 59.451 38.462 14.30 0.00 0.00 3.58
2540 3075 6.015265 CAGGTGATCATGATGTATCTCTGTCT 60.015 42.308 14.30 0.00 0.00 3.41
2598 3136 3.355378 CTTAACTGGTGGATGGATGCAA 58.645 45.455 0.00 0.00 0.00 4.08
2684 3226 2.091333 GGAGGAAGAGGAGGAGAGTGAT 60.091 54.545 0.00 0.00 0.00 3.06
2687 3229 1.569072 GAGGAGGAAGAGGAGGAGAGT 59.431 57.143 0.00 0.00 0.00 3.24
2708 3259 3.588842 CCAAGCCTGAAGATATATCCCCA 59.411 47.826 9.18 6.77 0.00 4.96
2717 3268 3.651904 AGAGATATGCCAAGCCTGAAGAT 59.348 43.478 0.00 0.00 0.00 2.40
2769 3320 9.727859 TGCACTATAGTATTTCCTTAACACAAA 57.272 29.630 4.74 0.00 0.00 2.83
2772 3323 8.943909 AGTGCACTATAGTATTTCCTTAACAC 57.056 34.615 20.16 2.35 0.00 3.32
2791 3347 4.861462 CCATATCTATGTCATCGAGTGCAC 59.139 45.833 9.40 9.40 31.82 4.57
2799 3355 9.935241 ACTTGTGTATTCCATATCTATGTCATC 57.065 33.333 0.00 0.00 31.82 2.92
2827 3383 5.880901 AGTCAAAGGTCTGATTTGTACCAT 58.119 37.500 4.25 0.00 38.50 3.55
2980 3536 2.928801 TTTCTGCTGTTGTCCTGCTA 57.071 45.000 0.00 0.00 38.70 3.49
3024 3590 3.119280 CCCCGTTGACTTTGTGTCTTTTT 60.119 43.478 0.00 0.00 45.54 1.94
3025 3591 2.425668 CCCCGTTGACTTTGTGTCTTTT 59.574 45.455 0.00 0.00 45.54 2.27
3026 3592 2.021457 CCCCGTTGACTTTGTGTCTTT 58.979 47.619 0.00 0.00 45.54 2.52
3027 3593 1.064979 ACCCCGTTGACTTTGTGTCTT 60.065 47.619 0.00 0.00 45.54 3.01
3028 3594 0.544697 ACCCCGTTGACTTTGTGTCT 59.455 50.000 0.00 0.00 45.54 3.41
3029 3595 0.942252 GACCCCGTTGACTTTGTGTC 59.058 55.000 0.00 0.00 45.54 3.67
3030 3596 0.812412 CGACCCCGTTGACTTTGTGT 60.812 55.000 0.00 0.00 0.00 3.72
3031 3597 1.503818 CCGACCCCGTTGACTTTGTG 61.504 60.000 0.00 0.00 0.00 3.33
3032 3598 1.227734 CCGACCCCGTTGACTTTGT 60.228 57.895 0.00 0.00 0.00 2.83
3033 3599 1.070105 TCCGACCCCGTTGACTTTG 59.930 57.895 0.00 0.00 0.00 2.77
3034 3600 1.070275 GTCCGACCCCGTTGACTTT 59.930 57.895 0.00 0.00 0.00 2.66
3035 3601 2.135581 TGTCCGACCCCGTTGACTT 61.136 57.895 0.00 0.00 31.32 3.01
3036 3602 2.522436 TGTCCGACCCCGTTGACT 60.522 61.111 0.00 0.00 31.32 3.41
3037 3603 2.356673 GTGTCCGACCCCGTTGAC 60.357 66.667 0.00 0.00 0.00 3.18
3038 3604 3.980989 CGTGTCCGACCCCGTTGA 61.981 66.667 0.00 0.00 35.63 3.18
3039 3605 2.419057 TTACGTGTCCGACCCCGTTG 62.419 60.000 15.74 0.00 37.88 4.10
3040 3606 1.743321 TTTACGTGTCCGACCCCGTT 61.743 55.000 15.74 4.31 37.88 4.44
3041 3607 1.743321 TTTTACGTGTCCGACCCCGT 61.743 55.000 15.11 15.11 37.88 5.28
3042 3608 0.599728 TTTTTACGTGTCCGACCCCG 60.600 55.000 0.00 6.24 37.88 5.73
3043 3609 1.812235 ATTTTTACGTGTCCGACCCC 58.188 50.000 0.00 0.00 37.88 4.95
3044 3610 6.477742 GTTAATATTTTTACGTGTCCGACCC 58.522 40.000 0.00 0.00 37.88 4.46
3045 3611 6.034470 TCGTTAATATTTTTACGTGTCCGACC 59.966 38.462 0.00 0.00 38.59 4.79
3046 3612 6.977316 TCGTTAATATTTTTACGTGTCCGAC 58.023 36.000 0.00 0.00 38.59 4.79
3047 3613 6.237542 GCTCGTTAATATTTTTACGTGTCCGA 60.238 38.462 0.00 0.00 38.59 4.55
3048 3614 5.892648 GCTCGTTAATATTTTTACGTGTCCG 59.107 40.000 0.00 0.00 38.59 4.79
3049 3615 6.764094 TGCTCGTTAATATTTTTACGTGTCC 58.236 36.000 0.00 4.89 38.59 4.02
3050 3616 8.816204 ATTGCTCGTTAATATTTTTACGTGTC 57.184 30.769 0.00 9.75 38.59 3.67
3051 3617 9.910511 CTATTGCTCGTTAATATTTTTACGTGT 57.089 29.630 0.00 3.67 38.59 4.49
3052 3618 8.879299 GCTATTGCTCGTTAATATTTTTACGTG 58.121 33.333 0.00 12.59 38.59 4.49
3053 3619 8.982925 GCTATTGCTCGTTAATATTTTTACGT 57.017 30.769 13.54 0.00 38.59 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.