>input_sequence_60950
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-------------------------------ATGGC------CTCCGACCATGAGCGCCTCCGCGCGCTCAAGGCCTTCG
ACGGCACCAAGGCCGGCGTCAAGGGCCTCGTCGACGCGGGCGTCACCACCATCCCTGCCATCTTCCACCACCCGCCGGAC
TCCCTGGCCGACGCGCCC---CATCACCA---TGGTCACCACCAGTTCGCCATCCCGGTCATCGACCTCGCCGGCCTCGC
GAAGCCGTCGGGGCGGGCCTCGGTGGTCGGCGCGGTAAGGGCGGCCGCGGAGACCGTGGGCTTCTTCCAGGTGACGAACC
ACGACGTGCCGGAGCCGGCCATGTCCGAGATCCTCGCGGCGGTCCGGCGCTTCAACGAGGAGCCGGCGGAGGCCAAGGCG
CCGTACTACAGCCGGGACACCGAGCGGCGCGCTAGGTACCAGTGCAACTTCGACCTGTTTCGGTCGCCGACGGCCTGCTG
GCGCGACACGCTCTACATGGAGATGGCCCCGGAGCCGCCGCCGCCCGAGCAGATCCCGCCGGCGTGCCGGGCCATCGTGC
CGGAGTACGCTGGGCTGGTGCAGCGGC---TGGGGCGGACCCTCTTCGGGCTGCTGTCGGAGGCGATGGGCCTCCGGCGC
GGGTACCTGGAGGAGGAGGCCGGGTGCCTGGAGGGGCTGAGCGTGGGCTGCCACTACTACCCGGCGTGCCCGGAGCCGCA
CCGGACGCTGGGCAACGCGAGGCACTCCGACCCCAGCTTCCTCACCGTGCTCCTCCAGGACGCCGTCGGCGGACTCCAGG
TGCTGGTGGACGTCGACGA---GCGGCGGCCGGCGTGGGTGGACGTGCCGGCGGAGGCGTGTGCGCTGGTGGTGAACGTC
GGTGACTACCTGCAGATCCTGTCCAACGACCGGTTCAGGAGCGTGGAGCACCGCGTGGTGGCCAACACCGCCGGTCCCCG
GGTCTCCGTCGCATGCTTCTTCCGCGCCGA---------CGCCTCGACGAGGGTGCTCGCTCCGATCGTCGCCGGCGGTG
ATGGCGACGGCCGCGCGAGGTACAGGAGCACGACGGTGCCGGAGATGCTCCGGCA------------CTA---CGGCGCC
AAGGGCCTGGACGGCGTCTCTGCGCTCCAGCGCGTCAGGATCTGA-----------------------------------
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>chr4A_1_TraesCS4A01G313700
CAACTTTGTGAGCATGTATAATATCGAGATGTACACGCCAATTTTTTGTTTGAATTTTTTTATCATATCAAAATATGTTC
AAAACACATTTTAAAAACCAGGAGCGCGTGCTCCCATGTGCCAAAACGTCACTCTCTTATTGTAGACATACTTTTTTGTC
ATCTCTAAATTACATGCAAGACTTAAAAAGAACG--GTCTTATCAATCATTATACATGCCCTAAAACCTAAGGGAATGAA
TTAAATTTGGTAAATACAAATGAAAACTGATTTATTCTGTAGCAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAATCAGGCAACTTACCATTAGCTAAACTGAAGCTCA
TAATCTCGCCAAATTTGCTTGCAACCTAGATATAGGTAGACATGTTTGGTTGGGCAATCCTCATGATCCCGATCTTGTAC
CTATGACAATTGCTTCTGAATAAATAAAGCAGGCGAGAATTCTCAAAAAAAAAAAGCTAAACTGCAGTTATTTGTACTCC
CGCTATTTAGATTTTTTTTAAAAAAAATTATTATTTTCCAGATTCACTATTTATATTCTTTTTT----------ATTTTC
CAGATTCTGTTTGATGATTTTACTGATATACTCTAGATA-----------------------------------------
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------------------------------------------------TCAGACGTTGAAGTGTACACGGAAGGCTGGTC
AGTAGAGCGCCACGACTACTTCACTCACTCCCACACACACAGAGCT----------------------------------
------------TAGCT----CCAATAATCCATGGC------CTCCGACCATGAGCGCCTCCGCGCGCTCAAGGCCTTCG
ACGGCACCAAGGCCGGCGTCAAGGGCCTCGTCGACGCGGGCGTCACCACCATCCCTGCCATCTTCCACCACCCGCCGGAC
TCCCTGGCCGACGCGCCC---CATCACCA---TGGTCACCACCAGTTCGCCATCCCGGTCATCGACCTCGCCGGCCTCGC
GAAGCCGTCGGGGCGGGCCTCGGTGGTCGGCGCGGTAAGGGCGGCCGCGGAGACCGTGGGCTTCTTCCAGGTGACGAACC
ACGACGTGCCGGAGCCGGCCATGTCCGAGATCCTCGCGGCGGTCCGGCGCTTCAACGAGGAGCCGGCGGAGGCCAAGGCG
CCGTACTACAGCCGGGACACCGAGCGGCGCGCTAGGTACCAGTGCAACTTCGACCTGTTTCGGTCGCCGACGGCCTGCTG
GCGCGACACGCTCTACATGGAGATGGCCCCGGAGCCGCCGCCGCCCGAGCAGATCCCGCCGGCGTGCCGGGCCATCGTGC
CGGAGTACGCTGGGCTGGTGCAGCGGC---TGGGGCGGACCCTCTTCGGGCTGCTGTCGGAGGCGATGGGCCTCCGGCGC
GGGTACCTGGAGGAGGAGGCCGGGTGCCTGGAGGGGCTGAGCGTGGGCTGCCACTACTACCCGGCGTGCCCGGAGCCGCA
CCGGACGCTGGGCAACGCGAGGCACTCCGACCCCAGCTTCCTCACCGTGCTCCTCCAGGACGCCGTCGGCGGACTCCAGG
TGCTGGTGGACGTCGACGA---GCGGCGGCCGGCGTGGGTGGACGTGCCGGCGGAGGCGTGTGCGCTGGTGGTGAACGTC
GGTGACTACCTGCAGATCCTGTCCAACGACCGGTTCAGGAGCGTGGAGCACCGCGTGGTGGCCAACACCGCCGGTCCCCG
GGTCTCCGTCGCATGCTTCTTCCGCGCCGA---------CGCCTCGACGAGGGTGCTCGCTCCGATCGTCGCCGGCGGTG
ATGGCGACGGCCGCGCGAGGTACAGGAGCACGACGGTGCCGGAGATGCTCCGGCA------------CTA---CGGCGCC
AAGGGCCTGGACGGCGTCTCTGCGCTCCAGCGCGTCAGGATCTGAATCTACCTCATC-----------------------
---------CAATCTGAATGTATCTAAGTCAAAAAGAAAAAAAAAA-----------------TCTTGTGTTCATGATTC
AGATTCGTTTTTGGATCTGAACTGATGATTC--AAATTCATCCTA---ATGCAAGATGCAATCTCTGTTGTACTC-----
-TTTTGAAGGGTGGAAATTCGAATTCAGCTGGACATGCAGAGCAGATTTAAATTCCCCTGAGATGATTACAGGTAGGAAA
GGGAAACATACAGT---AGTAACATGAACTGGAAATGAAATCAACAAAACAGA-AGAACAGACATCTCCTAGAATGGAAA
CATGAACTGCAAATGGAACCAACACAAACAAATGGCAAGTTATTCACAG------CGGGAC-------------------
----ACACAAGAACTAGTGGAGCTGA--------GTTGAGATGGCTGATGACTTTCTTCAGCATCTGCCATGGCGGCATT
CATCAGTGATCGCCGCAGCTATGTACAGACTGACAGACAGAGATACATC--ATGATCA-CCTGCATTACTGAGTTACTGA
CTGAGCTAACCATCCTTGCAT----CCATCCACCAGTTAAGGGTCTGCGTGGCCCATGATGGCCTCGTCGCCGGAGTCGT
AGCCCTCGGCGTCGCTCAGCTCCTCATCACT------CTCCTCCTCTTCCTC---CTCTGGGGATATATCTTCAGGCTTG
GCATATCTCTCACAATATTCTGAACAGAGATTTTTTTAGTTTGTGTTAAGGAAATACTA-----TAGTGCACTCGATGAC
ATAGATATGGAATACACAAGTTATGGTACAAATCAGACCTTTGACTTTATTTTCATAGGCATTCTTGTCGCGCATCATGA
GCGAAGCCGCCTCGCCGTTCAAGGGGTCCGAGGGGTTCGGGTACAGGAGAAGCTGGGGCAGGAACACCTCAAAGATATTC
ACAAGGTCTGCAGCAT----------AGCAGGACAACAGCAGAAATGTGGTGCTTCAGTTCAGTTAGTAAAAAAGACACA
AAGTCAACGGGGTCGGACACGTAAAAATATTAACGAGCAATAGCTAGTTTCGATATA
>chr5D_138
--------------------------------------------------------------------------------
---------------------------------------------------------TATTATAGACATACTTTTTTGTC
ATC-CTAAATTACATGCAAGACTTAAAGAAAAGATTGTCTTATCAATCATTATACATGCCCTAAAACCAAACGGAATGAA
TTAAATTCGGTAAATACAAATGAAAACAGATTT-TTCTGTAGCACCGTGAAAAACTGAAAATTTGTTTTTTTGGGGGTTT
TGGTCTTCGGTTTATCGATTTTTATGCCCACCCCTACTCCCAAAAATCGGCCCAAATTC---------------------
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----------------------------------------AAAAAATCAAGCAACTTACCATTAGCTAAACTG-------
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----------------------------------------------------------------CAGTTATTTCTACTCC
CACTATTTAGATTTTTTTTAAAAA---TTATAATTTTCCAGATTCACTATTTATAATTTTTTATTTTCTTTTAAATTTTT
CAGATTCTGTTTGATGATTTTACTGATATAGATATTAAAACCATTAAGCTATGCGTGAAGGATGGCTTGGCCTCGGTGAG
AGATCTTTTGCAATTTTTTTAGATGAAGGTGTGGATTATTTTTTAAATGTATTTTTTTAGATGGAGATGAGAACCTATGG
TATTTTTTTAAATGAAGGGTTATGCAAAGTGGCACTCGCTGGTAGGCTGTTGTGATATTTTTTATTTTTATTTTTTATTT
TTTTAGATGAAGGTGAGGATTTTTTGGGTGAAGCTGAGGACTCAAGAACTTTATGTATTTTTTTTCAATGAAAACGTGTG
CATAGCTTCCTCCCAAGCGGCGTCAAAGGGTGGCGCCTCAATCACTAGTCGGACGTTGAGGTGTACACGGAAGGCTGGTC
AGTAGAGCGCCACGACTACTTCACTCACTCCCACACACACAGACTCTGAATTTGTAAATGGATCC----ATATGCATACA
CTGCACGAGAGCTTGCTTGCTCCAACAATCCATGGCCTCCGACTCCGACCATGAGCGCCTCCGCGCGCTCAAGGCCTTCG
ACGACACCAAGGCCGGCGTCAAGGGCCTCGTCGACGCGGGCGTCACAGCCATCCCCGCCATCTTCCACCACCCGCCGGAC
TCCCTAGCCGACGCGCCC---CATCACCA---TGGTCACCACCAGTTCGCCATCCCGGTCATCGACCTCGCCGGCCTCGC
GACGCCGTCGGGGCGAGCCTCGGTGGTCGGCGCGGTAAGGGCGGCCGCGGAGACGGTGGGCTTCTTCCAGGTGACGAACC
ACGGCGTGCCGGAGTCGGCCATGTCGGAGACCCTCGCGGCGGTGCGGCGCTTCAACGAGGAGCCGGCGGAGGCCAAGGCG
CCCTACTACAGCCGGGACCCCGC-----------GGTACCAGTGCAACTTCGACCTGTTCCGGTCGCCGGCGGCCGGCTG
GCGCGACACGCTCTACATGGAGATGGCCCCGGAGCCACCGCCGCGGGAGGAGATCCCGCCGGCGTGCCGGGCCATCGTGC
CGGAGTACAC------------GCGGC---TGGGGCGCAAGCTCTTCGGGCTGCTGTCGGAGGCTCTGGGCCTCCGGCGT
GGGTACCTGGAGGACACCGCCGGGTGCCTGGACGGGCTGAGCGTGGGCTGCCACTACTACCCGGCGTGCCCGGAGCCGCG
CCGGACGCTGGGCACCGCGAGGCACTCCGACCCCAGCTTCCTCACCGTGCTCCTCCAGGACGCC-TCGGCGGCCTCCAGG
TGCTGCTCGACGACGACGA---GTGGCGGCCGGCGTGGGTGGACGTGCCGGCGGAGGCGGGGGCGCTGGTGGTGAACGTC
GGCGACTACCTGCAGATCCTGTCCAACGACCGGTTCAGGAGCGTGGAGCACCGCGTGGTGGCCAACGGCGCCGGTCCCCG
GGTCTCCGTGGCTTGCTTCTTCCGCGCCGA---------CGCGTCGACGAGGGTGCTCGCGCCGATAGTCACCGCCGG--
-------CGACACTGCGCGGTACAGGAGCACGACGGTGCCGG------------A------------CTA---CGGCGCC
AAGGGCCTGGACGGCGTCTCTGCGCTCCAGCGCGTCAGGATCTGAATGGATCTCATCTCACGG-----------------
----------AATCTGAATGTATCCAAGTCAATTCTTGTGTGTG------------------------------------
---------------------CTGATGATTC--AAATTCATCCTAGCAATGCAGGATGCAATCTCTGTAGTAGTACATGT
TTTCTTGAGGATGGAACTGTGGATTCAGTTGGAATTGCAGAGCAGATATAAATTCCCCTGAGATGAGATGATTATCAACA
GAAACAGAATTACAGACAGTAACATGAACTGAAAATGAATAAACAGAACAGAACAGAACATACATCCCCTACAATGGAAA
CATGAACTGCAAATGGAACCAACATAAACAAATGGCAAGTTATTCACAG------CGACTAGCACGACGGCGACGACGAC
GATGACACATGAACTAGTGGAGCTGA--------CTTGAGATGGCTGATGACTTTCTTCAGCATCTGCCATGGCGGCATT
CATCAGTGAGCGCCGCAGCTATGTACAGACAGAC----AGAGATACATC--ATGATCATCCTCCATTACTGAGTTACTGA
CTGAGCTAACCATCCATGCATCCATCCATCCACCAGTTAAGGGTCTGCGTGGCCCATGATGGCCTCGTCGCCGGAGTCGT
AGCCCTCGGCGTCGCTCAGCTCCTCGTCGCTCTCCTCTTCCTCCTCCTCCTC---CTCCGGGGATATGTCTTCAGGCTTG
GCATATCTCTCACAATATTCTGAACAGAGA-TTTTTTAGCTTATGTTAAGGAAATACTACTGTATAATGCACTCTATGAC
AGAGATATGGAATACACAAGTCCTGGTACAAATCGGACCTTTGACTTTATTTTCATAGGCATTCTTGTCGCGCATCATCA
GCGATGCCGCCTCGCCGTTCAAGGGGTCCGAGGGGTTCGGGTACAGGAGAAGCTGGGGCAGGAACACCTCAAAGATATTC
ACAAGGTCTGCAGCAGCAGCAGCAGCAGGAGGACAACAGCAAAAATGTGGTGCTTCAGTT--------------------
---------------------------------------------------------
>chr5B_933
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-------------------------------------------------------------------------GCTGGTC
AGTAGAGCGCCACGACTACTTCACTCGCTCCCA--CACACACACTGTGAATTTGTAAATGGATCCATATATATGCATACA
CTGCACGAGAGCTTGCT----CCAACAATCCATGGC------CTCCGACCATGAGCGCCTCCGCGCGCTCAAGGCCTTCG
ACGGCACCAAGGCCGGCGTCAAGGGCCTCGTCGACGCGGGCGTCACCACCATCCCCGCCATCTTCCACCACCCGCCCGAG
TCCCTAGCCGACGCGCCC---CATCATCACCGTGGTCACCACCAGTTCGCCATCCCGGTCATCGACCTCGCCGGCCTCGG
GACGCCGTCGGAGCGAGCCTCGGTGGTCGGCGCGATGAAGGCGGCCGCGGCGACCGTCGGCTTCTTCCAGGTGACGAACC
ACGGCGTGCCGGAGTCGGCCATGTCCAAGGTCCTCGCGGCGGTGCGGCGCTTCAACGAGGAGCCGGCGGAGGCCAAGGCG
CCGTACTACAGCCGGGACCCGAAGCGGCGCGCTAGGTACCAGTGCAACTTCGACCTCTTCCGGTCGCCGGCGGCGAGCTG
GCGCGACACGCTCTACATGGAGATGGCCCCGGAGCCGCCGCCGCCGGAGCAGATCCCGCCGGCGTGCCGGACCATCGCGC
CGGAGTACACGCGGCTGGTCCAGCGGC---TGGGGCGCATCCTCTTCGGGCTGCTGTCGGAGGCGCTGGGGTTGAGCCGA
AGCTACCTGGAGGAGGAGGCCGGGTGCCTGGAGGGGCTGAGCGTGGGCTGCCACTACTACCCGGCGTGCCCAGAGCCGCG
CCGGACGCTGGGCACCGCGAGGCACTCCGACCCCAGCTTCCTCACCGTGCTCCTCCAGGACGCCGTCGGCGGCCTCCAGG
TGCTCGTCGAGGATGAG---AAACGGCGACCGGCGTGGGTGGACGTGCCGGCGGAGGCGGGGGCGCTGGTGGTGAACGTC
GGCGACTACCTGCAGATCCTGTCCAACGACCGGTTCAGGAGCGTGGAGCACCGCGTGGTGGCCAGCAGTGCCGGGCCCCG
GGTCTCCGTGGCATGCTTCTTCCGTGCCGA---------CGCGTCGACGAGGGTGCTCGCGCCCATCGTCGCCGGCGGTG
ATGGCGACGGCCGCGCGCGGTACCGGAGCACGACTGTGCCGG------------AGATGCTCCGGCACTA---CGGCACC
AAGGGCCTGGGCGGCGTGTCTGCGCTCCAGCGCGTCAGGATCTGAATGGATCTCATCTCAAACAATTCAGGATCTGAATG
TATCTCATCCAATCTGAATGTATCTAAGTCAATGCTGATGTTCAGATCTTTGAAAAAAACATTTCTTGTGTTCATGATTC
AGATTCGTGTTTGGATCTGAACTCATGATTCAAAAATTCATCCTAGCAATGCAAGATGCAATCTCTGTTGTACTT-----
-TTTTGAAGGGTGGAAATTTGAATTCAGCTGGACATGCAGAGGAGATTTAAATTCAGCTGG-------------------
-----ACATACAGT---AGTAACATGAACTGAAAATGAATTAACAGAACAGAAGAGA-----CATCCCCTAGAATGGAAA
CATGAACTGCAAATGGAACCAACACAAACAAATGGCAAGTTATTCACAGGGATGACGACGATGACGACAACAACAACAAC
GACGCGACACGAGAGCTAGGGGAACTGAAACTGAGTTGAGATGGCTGATGACTTTCTTCAGCATCTGCCATGGCGGCATT
CG---GTGAGCGCCGCAGCTATGTACAGACAGACTGACAGAGATACATGAAATGATCATCCTGCATTACTGAGTTACTGA
CTGAGCTAACC--------ATCCATCCATCCACCAGTCAAGGGTCTGCGTGACCCATGATGGCCTCGTCGCCGGAGTCGT
AGCCCTCGGCGTCGCTCAGCTCCTCGTCGCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCGGGGATATGTCTTCAGGCTTG
GCATATCTCTCACAATATTCTGAACAGAGA-TTTTTTAGCTTATGTTAAGGAAATACTACTGTATAATGCACTCTATGAC
AGAGATATGGAATACAGAAGTTCTGGTACAAATCAGACCTTTGACTTTATTTTCATAGGCATTCTTGTCGCGCATCATGA
GCGAAGCCGCCTCGCCGTTCAAGGGGTCCGAGGGGTTCGGGTAGAGGAGAAGCTGGGGCAGGAACACCTCAAAGATATTC
ACAAGGTCTGCCA---------CAACAGCAGGACAAGAGCAGAAATGTGGTGCTTCAGTTAGT-----------------
---------------------------------------------------------
>chr3D_971
CACAC-TGCACA--------------------------------------------------------------------
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---------AGCTAGCT----CCAATCATCCATGGC------CTCCAACCAC---CGCCTCGGGGCGCTCAAGGCGTTCG
ACGACACCAAGGCCGGCGTCAAGGGCCTCGTCGACGCCGGAGCCACGGCCGTCCCCGCCATCTTCCACCACGCGCCCCAA
TCCCTCAACGACGCGCCG---CATCATCA---TG---ACCACCAGTTCGCCATCCCGGTCATCGACCTTGCCGGCCTCGC
GACACCGTCCGGGCGAGCATCGGCGGTCGGTGCCGTGAAGGCGGCCGCGGAGACGGTGGGCTTCTTCCAGGTGGTGAACC
ACGGCGTGCCGGAGGAGGCCATGTCGGCGATGCTAGCGGCGCTGCGGAACTTCATCGAGGGGCCGGTGGAGGCCAAGGCG
CCGTACTACACCCGTGACCACGGCCGGCGCGTGAGGTACCAGAGCAACTTCGACCTGTTCCAGTCGCCGGCGGCCAACTG
GCGCGACACCCTGTTCATGGATATGGCACCGGAGACGCCGGAGCCCGAGGAAATCCCCCCGGCGTGCAGGGCAATCGCCC
CAGAGTTCTCGGGGCTGGTGCAGCGGC---TGGGGAGCACGGTGCTCGGGCTTCTGTCGGAGGCGCTGGGCCTCCGGCGA
GGGCACCTGGAGGAGAACGCCGCGTGCCTAGAGGGGCTGAGCCTCGCCTGCCACTACTACCCGGCCTGCCCGGAGCCGCA
CCTGACGCTGGGCACCACCAAGCACTCCGACCCGAGCTTCATCACCGTGCTCCTCCAGGACGCCGTCGGCGGCCTCCAGG
TGCTCGTCGACGACGACGACAAGCAGAACCCGGCGTGGGTGGACGTGCCGGCAGTGGCGGGGGCGCTGGTGGTGAACGTG
GGCGACTACCTGCAGCTCCTGTCCAACGACAGGTTCAAGAGCGTGGAGCACCGCGTGGTGGCCAAGAGCGCGGGGCCGAG
GGTGTCGGTGGCCTGCTTCTTCCGGACGGA---------CGGGTCGACGAGGGTGCTCGCGCCGATCGTCGCCGACGG--
-------CGGCAACGCCCGGTACAGGAACACGACGGTGGACGAAATGGTCAGGCA------------CTA---CAGGGCC
AAGGGCCTCGACGGCGTCTCCTCACTCCAATACGTCAGGATCTAA---------------------------------T-
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>chr3B_972
ACACACTGCAGA--------------------------------------------------------------------
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---------AGCTAGCT----CCAACCATCCATGGC------CTCCGACCAC---CGACTCGGCGCGCTCAAGGCGTTCG
ACGACACCAAGGCCGGCGTCAAGGGCCTCGTCGACGCGGGAGCCACGGTCGTCCCCGCCATCTTCCACCACGCGCCCGAA
TCCCTCAACGACGCGCCG---CATCACCA---TG---ACCACCAGTTCGCCGTCCCGGTCATCGACCTTGCCGGCCTCGC
GACACCGTCGGAGCGAGCCTCGGTGGTTGGCGCCGTGAAGGCGGCCGCGGAGACGGTGGGCTTCTTCCAGGTGGTGAACC
ACGGCGTGCCGGAGGCGGCCATGTCGGCGATGCTCGCGGCGCTGCGGAACTTCATCGAGGAGCCGGTGGAGGCCAAGGCG
CCGTACTACACCCGTGACTACGGCCAGCGCGTGAGGTACCAGAGCAACTTCGACCTGTTCCACTCGCCGGCGGCCAACTG
GCGCGACACCCTGTTCATGGATATGGCACCGGAGCCGCCGGCACCCGAGGAAATCCCACCGGCGTGCAGGGCCATCGCAC
CAGAGTTTGCCGGGCTGGTGCAGCGGC---TGGGGAGCACGCTGCTCGGGCTTCTGTCGGAGGCGCTGGGCCTCCCGCGA
GGGCACCTGGAGAAGGACGCCGCGTGCCTAGAGGGGCTGAGCCTCGCCTGCCATTACTACCCGGCGTGCCCGGAGCCGCA
CCTCACGCTGGGCACCACCAAGCACTCCGATCCCAGCTTCCTCACCGTGCTCCTCCAGGACGCCGTCGGCGGCCTCCAGG
TGCTCGTCGACGACGACGGCAAGCAGAACCCGGCGTGGGTGGATGTGCCGGCAGTGGCGGGGGCGCTGGTGGTGAACGTG
GGCGACTACCTGCAGCTCCTGTCCAACGACAGGTTCAAGAGCGTGGAGCACCGCGTGGTGGCAAAGAGCGCGGGGCCGAG
GGTGTCGGTGGCCTGCTTCTTCCGGGCGGA---------CGGGTCGACGAGGGTGCTGGCGCCGATCGTCGCCGACGG--
-------CGCCGCCGCGCGGTACAGGAACACGACGGTGGACGAGATGGGCAGGCA------------CTA---CAGGGCC
AAGGGTCTCGACGGCGTCTCCGCACTCGAACACTTCAGGATCTAA---------------------------------T-
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---------------------------------------------------------
>chr3A_972
ACACACTGCAGA--------------------------------------------------------------------
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---------AGCTAGCT----CCAATTACCCATGGC------CTCCGACCAC---CGCCTCGGTGCGCTCAAGGCGTTCG
ACGACACCAAGGCCGGCGTCAAGGGCCTCGTCGACGCCGGAGCGACGGCCGTCCCCGCCATCTTCCACCACGCGCCCGAA
TCCCTCAACGACGCGCCG---CATCACCA---TG---ACCATCAGTTCGCCATCCCGGTCATCGACCTTGCCGGCCTCGC
GACACCGTCCGAGCGAGCATCGGCGGTCGGTGCCGTGAAGGCGGCCGCGGAGACGGTAGGCTTCTTCCAGGTGGTGAACC
ACGGCGTGCCGGAGGAGGCCATGTCGGCGATGCTCGCGGCGCTGCGGTGCTTCATCGAGGAGCCGGCGGTGGCCAAGGCG
CCGTACTACACCCGTGACCACGGCCGGCGCGTGAGGTACCAGAGCAACTTCGACCTGTTCCAGTCGCCGGCGGCCAACTG
GCGCGACACCCTGTTCATGGATATGGCACCGGAGCCGCCGGCGCCCGAGGAAATCCCCCCGGCGTGCAGGGCAATCGCCC
CAGAGTTCGCAGGGCTGGTGCAGCGGC---TGGGGAGCACGCTGCTCGGGCTTCTGTCGGAGGCGCTGGGCCTCCGGCGA
GGGCACCTGGAGGAGGACGCCGCGTGCCTAGAGGGGCTGAGCCTCGCCTGCCACTACTACCCGGCGTGCCCGGAGCCGCA
CCTCACGCTGGGCACAACCAAGCACTCCGACCCCAGCTTCATCACCGTGCTCCTCCAGGACGCCGTCGGCGGCCTCCAGG
TGCTCGTCGACGACGACGACAAGCAGAACCCGGCGTGGGTGGACGTGCCGGCAGTGGCGGGGGCGCTGGTGGTGAACGTG
GGCGACTACTTGCAGCTCCTGTCCAACGACAGGTTCAAGAGCGTGGAGCACCGCGTGGTGGCCAAGAGCGCGGGGCCGAG
GGTGTCGGTGGCCTGCTTCTTCGGGGCGGA---------GGGGTCGACGAGGGTGCTTGCGCCGATCGTCGCTGACGG--
-------CGGCAACGCCCGGTACAGGAACACGACGGTGGACGAAATGGCCAGGCA------------CTA---CAGGGCC
AAGGGCCTCGACGGCGTCTCCTCACTCCAACACGTCAGGATCTAA---------------------------------TG
AATCTCACCCAA--------------------------------------------------------------------
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---------------------------------------------------------
>chr3A_972
ACACACTGCAGA--------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------AGCTAGCT----CCAATCATCCATGGC------CTCCGACCAC---CGCCTGGGCGCGCTCAAGGCGTTCG
ACGACACCAAGGCCGGCGTCAAGGGCCTCGTGGACGCGGGAGTCACGGCCGTCCCCGCCATCTTCCACCACGCGCCCGAA
TCCCTCGACGACGCGCCC---CATCACCA---TG---GCCACCAGTTCGCCATCCCAGTCGTCGACCTCGCCGGCCTCGC
GACACCGTTCGGGAGAGCCTCGGCGGTCGGCGCGGTGAAGGCGGCCGCCGAGACGGTGGGCTTCTTCCAGGCGGTGAACC
ACGGTGTGCCGGAGGCAGCTCTGTCGGCGATGCTCGCGGCGCTGCGGGGCTTCAACGAGGAGACGGCGGATGCCAAGGCG
CCGTACCACACCCGGGACGACAGCCGGCGGGTGAGGTACCATAGCAACTTCGACCTCTACCAATCGCCGGCAGCCAACTG
GCGTGACACGCTGTACATGGAGATGGCTCCGGAGCCGCCGGCGCCCGAGGAGATCCCGCCGGCGTGCAGGGCCACCGCGC
TGGAGTTCGCGGGGCTGGTGCAGGGGC---TGGGGAGCACGCTGCTCGGGCTGCTGCCAGAGGCGCTGGGCCTCCGGCAA
GGGCACCTGGAGGAACACACACAGTGCCTAGAGGGGCCGAGCCTCGCCTGCCACTACTACCCGGCGTGCCCGGAGCCGCA
CCTGACACTGGGCACCACCAAGCACTCCGACCCCGGCTTCCTCACCGTGCTCCTCCAGGACGCCGTAGGTGGCCTCCAGG
TGCTCGTCGAGGATGAC---AAGCAGCAGCCGGCGTGGGCGGACGTGTCGGCAGTGGCGGGGGCCCTGGTGGTGAACGTC
GGCGACTATCTGCAGCTCATGTCCAACGACAGGTTCAAGAGCGTGGAGCACCGCGTGGTGGCCAAGAGCGCGGGGCCGAG
GGTGTCGGTGGCCTGCTTCTTCGGGGCGGA---------GGGGTCGACGAGGGTGCTTGCGCCGATCGTCGCTGACGG--
-------CGGCAACGCCCGGTACAGGAACACGACGGTGGACGAAATGGCCAGGCA------------CTA---CAGGGCC
AAGGGCCTCGACGGCGTCTCCTCACTCCAACACGTCAGGATCTAA---------------------------------TG
AATCTCACCCAA--------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------
>chr3D_979
--------CAGA--------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------AGCTAGCT----CCAATCCTCCATGGC------CTCCGACCAT---CGCTTCGGCGCGCTAAAGGCGTTCG
ACGATACCAAGGCCGGGGTCAAGGGCCTCGTGGACGCGGGAGTCACGGCCGTCCCCGTCATCTTCCACCACGCGCCCGAA
TCCCTCAACGACGCGCCC---CATCACCA---TG---GCCACCAGTTCGCCATCCCGGTCATCGACCTCGCCGGCCTCGC
GACACCGTCGGAGCGAGCCTCGGCGGTCGGCGCCGTGAAGGCGGCCGCGGAGACGGTAGGTTTCTTCCAGGTCGTGAACC
ACGGGGTGCCGGTGGCGGCCATGTCGGCGATGTTTGCGGTGCTGCGGGGCTTCAACGAGGAGACGGCGGATGCCAAGGCG
CCGTACCACACCCGGGACGACGGCCGGCAGGTGAGGTACCATAGCAACTTCGACCTGTACCAATCGCCGGCGGCCAACTG
GCGTGACACGCTGTACATGGAGATGGCTCCGGAGCCGCCGGCGCCCGAGGAGATCCCGCCGGCGTGCAGGGCCATCGCGC
CGGAGTTCGCGGGGCTGGTGCAGGGGC---TGGGGAGCACGCTGCTCGGGCTGCTGTCGGAGGCGCTAGGCCTCCGGCAA
GGGCACCTGG----------------------GGGGCTGAGCCTCGCCTGCCACTACTACCCGGCGTGCCCGGAGCCGCA
CCTGACACTGGGCACCACCAAGCACTCCGACCCCGGCTTCCTCACCGTGCTCCTCCAGGACGCCGTAGGTGGCCTCCAGG
TGCTCGTCGAGGATGAC---AAGCAGCAGCCGGCGTGGGTGGACGTGCCGGCAGTGGCGGGGGGCCTGGTGGTGAACGTC
GGCGACTATCTGCAGCTCATGTCCAACGACAGGTTCAAGAGCGTGGAGCACCGCGTGGTGGCCAAGAGCGCGGGGCCGAG
GGTGTCGGTGGCCTGCTTCTTCGGGGCGGA---------GGGGTCGACCAGGGTGCTTGCGCCGATCGTCGCTGACGG--
-------CGGCAACGCCCGGTACAGGAACACGACGGTGGACGAAATGGCCAGGCA------------CTA---CAGGGCC
AAGGGCCTCGACGGCGTCTCCTCACTCCAATACGTCAGGATCTAA---------------------------------T-
--------------------------------------------------------------------------------
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---------------------------------------------------------
>chr3B_988
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--------------GCT----CCAATAATCCATGGC------CTCCGACCAC---CGCCTCGGCGCGCTCAAGGCGTTCG
ACGACACCAAGGCCGGGGTCAAGGGCCTCGTGGACGCGGGAGTCACGGCCGTCCCCGCCATCTTCCACCACGCGCCCGAA
TCCCTCAACGACGCGCCC---CATCACCA---TG---ACCACCAGTTCGCCATCCCGGTCATCGACCTCGCCGGCCTCGC
GACACCGTTCGGGCGAGTCTCGGCGGTCGGCGCGGTGAAGGCGGCCGCGGAGACGGTGGGCTTCTTCCATGTGGTGAATC
ACGGTGTGCCGGAGGCGGCACTGTCGGCGATGCTCGCGGCGCTGCGGGGCTTCAACGAGGAGCCGGTGGATGCCAAGGCG
CCGTACCACACCCGGGACGACGGCCGGCGGGTTAGGTACCATAGCAACTTCGACCTGTTCCAGTCGCCGGCGGCAAACTG
GCGTGACACGCTGTACATGGAGATGGCGCCGGAGCCGCCGGCGCCCGAGGAGATCCCTCCGGCGTGCAGGACCATCGCGC
CGGAGTTCGCGGGGCTGGTGCAGGGGC---TGGGGAGCACGCTGCTCGGGCTGCTGTCGGAGGCGCTGGGCCTCCGGCAA
GGGCACCTGGAGGAACACACACAGTGCCT-GAGGGGCTGAGCCTCGCCTGCCACTACTACCCGGCGTGCCCGGAGCCGCA
GCTGACGCTGGGCACCACCAAGCACTCCGACCCCAGCTTCCTCACCGTGCTCCTCCAGGACGCCGTCGGCGGACTTCAAG
TTCTCGTTC---ACGACGAGAAGCAGCAGCCGGCGTGGGTAGACGTGCCGGCAGTGGCGGGGGCGCTGGTGGTGAACATC
GGCGACTACCTACAGCTCACGTCCAACGACAGGTTCAAGAGCGTAGAGCACCATGTGGTGGCCAAGAGCGCGGGGCCGAG
GGTGTCGGTGGCCTGCTTCTTCCGGGCGGA---------CGCGTGGACGAGGGTGCTCGAGCCGATCGTTCCCGACGG--
-------CGCCGACGCAAGGTACAGGAACACGACGGTGGACGAGATGGACAGGCA------------CTA---CAGGGCC
AAGGGCCTTGACGGCGTCTCCGCACTCCAACACTTCAGGATCT-------------------------------------
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>chr7D_988
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--------------GCT----CCAGTAGTCCATGGC------CTCCGAGCGT---CGCCTCTACGCGCTCAAGGCGTTCG
ACGACACCAAGGCGGGCGTAAAAGGTCTCGTGGACGCGGGCGTCACCGCGGTTCCTACCATCTTTCACCACCCGCCGGAA
TCCCTCGACGACGCACCAACTCATCCCCA---TG---GCCACCAGTTCTCCATCCCGGTCATCGACTTAGCCGGCCTCGT
GACACCGTCTGGACGGGCTTCGGTTGTGGGCGCGGTGAAGGCGGCCGCGGAGACGGTGGGCTTCTTCCAGGTGGTGAACC
ATGGCGTGCCAGAGGCCGCCATGTCCGGGATGCTCGCGGCGTTGCGGAGCTTCAACGAGGAGCCGGCGGAGGCAAAGCGG
CCGTACTACAGCCGGGACCCTGGCCGGCGCGCCAAGTACGAGAGCAACTTCGACCTCTTCCAGTCGCGGGCGGCCAGCTG
GCGCGACACGCTCTTCATGGAGATGGCCCCGGAGCCGCCGCCGCCCGAGGAGATCCCTCCGGCGTGCAGGCGCGTGGCGC
CGGAGTACGTGGGGCTAGTACAACGGC---TGGGCCGCACTCTCTTCGAGCTGCTATCGGAGGGGATGGGACTCCGGCGC
GGGTACCTGGAGGAGGAGCAGGAGTGCCTGGATGGGCTGAGCTTCGCCGGCCACTACTACCCTGCGTGCCCGGAGCCGCA
CCTGACCCTCGGAGCCGCCAGGCACTCCGACCCCAGCTTCCTCACGGTGCTCCTCCAGGACGCGGTCGGCGGACTCGAGG
TGCTCGTTGACGACGAC---AAGAACCAGCCTGCGTGGGTGGACGTGCCGACAGCGGCGGGGGCGCTGGTGGTGAACATC
GGCGACTACCTGCAGCTCATGTCCAACGACAGGTTCAAGAGCGTGGAGCACCGCGTGGTGGCCAAGAGCGTGGGGCCGAG
AGTCTCGGTAGCCTGCTTCTTCCGGGCGGA---------CGCGTCGACAAGGGTGCTTGAGCCGATCGTCACGGACGC--
-------CGGCGGCGCGCGGTACAGGAGCACGACGGTGGCGGAGTTGGTCCGGCA------------CTA---CAGGGCC
AAGGGCCTGGACGGCGTCCCTGCACTCCAACACGTCAGGATCTGAAT---------------------------------
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>chr2D_1031
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-------------------------------------------------------------------CTCAGGGCGTTCG
ACGAGACGAGGGCGGGCGTCAAGGGCCTGGTCGACGCCGGCGTCACCGCCGTCCCGTCCATCTTCCACCACCCGCCGGAG
ACCCTGCCCCACGGCGCG---------CA---TCGCCCTCATCGCTTCACCGTGCCGGTCATCAACCTGTCACCCGCCCT
GCAGGGAACCGCGCGGGCCGCGGCGGTCGCGGAGGTGAGGGCGGCCGCGGAGACGTTCGGCTTCTTCCAGGTGGTGGGCC
ACGGCGTGCCGGAGGCGGCCACGTCGGCGATGCTCGCGGCGGTGCGGGGCTTCATCGAGGAGCCCGTGGAGGCCAAGGCG
CCGTACTACACGCGGGACACCGGCCGGCGCGTGAGATACCAGAGCAACCTCGACCTGTTCCAGTCGACGGCGGCCAACTG
GCGCGACACGCTCTTCGTGGAGATGCTGCCGGAGCCGCCGGCGCCCGAGGAGCTCCCGGCGGCGTGCAGGCGCGTCGCGC
CGGAGTACGCGCGGCTGGTGCAGCGGCGGCTGGGCCGCGCGCTGCTGGGGCTGCTGTCGGAGGCGCTGGGCCTCCGCCCC
GGCCACCTGGAGGAGGAGCACGGGTGCCTGGAGGGGCTCAGCCTCGCCTGCCACTACTACCCGGCCTGCCCGGAGCCGCA
CCTCACCCTCGGCACCCCGCGGCACACCGACGCCAGCTTCCTCACCGTGCTCCTCCAGGACGCCGTCGGCGGCCTCCAGG
TGCTCGTCGACCTCGAGGGCGC------CCCGGCGTGGGTGGACGTGCCGCCGGTGGCGGGGGCGCTGGTGGTGAACGTC
GGCGACTTCCTGCAGCTCATGTCCAACGACAGGTTCAAGAGCGTGGAGCACCGCGTGGTGTCCAACGCCGTGGGGCCACG
GGTCTCGGTGGCGTGCTTCTTCCGGACGGACCGCGCCGCCGCGCCAACGACGGTGCTGGCGCCGATCGTCGCCGACGG--
-------CGACGAGCCGCGGTACAGGAGCACGACGGTGGAGGAGGTGGTCCGGCA------------GTACTACAAGGTC
AAGGGCCTCGCCGGCACCTCTGCACTCCAGCACTTCAGGCTCTGAATCT-------------------------------
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>SNPs
----SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------------------
---S-----------------------S-S--SS----------------------------------S--S--------
-------S-------------------S-----S----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----------------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------
-S----------------------SSS----S-----------------------S-S----S----------------S
------------------------------SSSSSS-S------------------------------------------
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--------------------------------------------------S--------S--------------------
-------------------------------------------SSS----------------------------------
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---S----------S----------------------------S------------------------------------
-----------------------------------------------------------S---------S-----S----
--------------------------------------------------------------------------------
----------S--------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
-------S---------------------------------------------------S-S------------------
--S-----------------------------------------------------------------------------
---------S--------------------------------S-----------------S-------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------S-----------------------------
--------------------------------SSSSS-SSSSS-S-----------------------------------
--------S-----------------------------------------------------------------S-----
-------------------S----------------------------------------------SSSS-SSSSSS-S-
-SS-S--------------------------S-------S-S-SSS--SSSS--------S-----S-------------
---------------------------------------------------------SSSS-------------------
---------S----------------------------------------------------------------------
---------S--------------------S---S---------------------------------------------
---------------S----------------------------------------------------------------
-------------------------S--S-----------------S-----------S--------S------------
------------------------------S--------S--S-----------------------S-------S-----
-S--------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
---------------S--------------------------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_666
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------CGCCAAATTTGCTTGCAACC------------------------------------------------------
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>reverse_2740
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-------------------CGAATTCAGCTGGACATGCAG----------------------------------------
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