Multiple sequence alignment - TraesCS4A01G304800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G304800 chr4A 100.000 2849 0 0 1 2849 600467069 600464221 0.000000e+00 5262.0
1 TraesCS4A01G304800 chr4A 91.701 964 64 10 1097 2054 599901163 599900210 0.000000e+00 1323.0
2 TraesCS4A01G304800 chr4A 90.821 926 76 5 1377 2296 600799711 600798789 0.000000e+00 1230.0
3 TraesCS4A01G304800 chr4A 93.608 485 30 1 613 1097 599905487 599905004 0.000000e+00 723.0
4 TraesCS4A01G304800 chr4A 84.375 160 17 4 2329 2480 599899670 599899511 1.770000e-32 150.0
5 TraesCS4A01G304800 chr4A 85.000 100 7 5 2573 2668 599899519 599899424 8.400000e-16 95.3
6 TraesCS4A01G304800 chr4D 88.145 1628 143 9 449 2052 3844077 3845678 0.000000e+00 1892.0
7 TraesCS4A01G304800 chr4D 85.078 965 122 8 981 1926 4142109 4141148 0.000000e+00 965.0
8 TraesCS4A01G304800 chr4D 88.959 317 24 5 2144 2451 3846097 3846411 5.760000e-102 381.0
9 TraesCS4A01G304800 chr4D 93.056 72 3 2 2059 2130 3845975 3846044 1.400000e-18 104.0
10 TraesCS4A01G304800 chr4D 84.762 105 13 2 841 942 4142204 4142100 5.020000e-18 102.0
11 TraesCS4A01G304800 chr4B 84.378 1037 136 9 1038 2052 4479692 4480724 0.000000e+00 994.0
12 TraesCS4A01G304800 chr4B 80.363 606 88 19 240 835 4479104 4479688 5.640000e-117 431.0
13 TraesCS4A01G304800 chr4B 89.811 265 22 3 1 262 4714812 4714550 4.550000e-88 335.0
14 TraesCS4A01G304800 chr6B 77.246 167 21 12 320 482 706898434 706898587 6.540000e-12 82.4
15 TraesCS4A01G304800 chr6A 76.301 173 26 12 313 482 610188235 610188395 8.460000e-11 78.7
16 TraesCS4A01G304800 chr5D 88.889 54 1 2 2380 2433 481655505 481655457 8.520000e-06 62.1
17 TraesCS4A01G304800 chr5D 97.059 34 1 0 2400 2433 286336246 286336213 1.100000e-04 58.4
18 TraesCS4A01G304800 chr3D 88.889 54 1 2 2380 2433 438269903 438269855 8.520000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G304800 chr4A 600464221 600467069 2848 True 5262.000000 5262 100.000000 1 2849 1 chr4A.!!$R1 2848
1 TraesCS4A01G304800 chr4A 600798789 600799711 922 True 1230.000000 1230 90.821000 1377 2296 1 chr4A.!!$R2 919
2 TraesCS4A01G304800 chr4A 599899424 599905487 6063 True 572.825000 1323 88.671000 613 2668 4 chr4A.!!$R3 2055
3 TraesCS4A01G304800 chr4D 3844077 3846411 2334 False 792.333333 1892 90.053333 449 2451 3 chr4D.!!$F1 2002
4 TraesCS4A01G304800 chr4D 4141148 4142204 1056 True 533.500000 965 84.920000 841 1926 2 chr4D.!!$R1 1085
5 TraesCS4A01G304800 chr4B 4479104 4480724 1620 False 712.500000 994 82.370500 240 2052 2 chr4B.!!$F1 1812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.034896 AGGTGCCACGAAATCGACTT 59.965 50.0 10.16 0.0 43.02 3.01 F
229 230 0.106669 ATGTCCTCTCCACCGATCGA 60.107 55.0 18.66 0.0 0.00 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 5635 0.036388 GCCATCCGACTTCCTTGACA 60.036 55.0 0.0 0.0 0.0 3.58 R
2217 6517 0.319211 TTGTAGACAGGTTCACGGCG 60.319 55.0 4.8 4.8 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.713902 CCAAGTTGGTCAGAGCTGT 57.286 52.632 14.21 0.00 31.35 4.40
19 20 2.839486 CCAAGTTGGTCAGAGCTGTA 57.161 50.000 14.21 0.00 31.35 2.74
20 21 2.693069 CCAAGTTGGTCAGAGCTGTAG 58.307 52.381 14.21 0.00 31.35 2.74
21 22 2.613977 CCAAGTTGGTCAGAGCTGTAGG 60.614 54.545 14.21 0.00 31.35 3.18
22 23 2.016905 AGTTGGTCAGAGCTGTAGGT 57.983 50.000 0.00 0.00 0.00 3.08
23 24 3.170991 AGTTGGTCAGAGCTGTAGGTA 57.829 47.619 0.00 0.00 0.00 3.08
24 25 2.826725 AGTTGGTCAGAGCTGTAGGTAC 59.173 50.000 0.00 0.00 0.00 3.34
25 26 1.460504 TGGTCAGAGCTGTAGGTACG 58.539 55.000 0.00 0.00 0.00 3.67
26 27 1.003928 TGGTCAGAGCTGTAGGTACGA 59.996 52.381 0.00 0.00 0.00 3.43
27 28 1.401199 GGTCAGAGCTGTAGGTACGAC 59.599 57.143 0.00 0.00 0.00 4.34
28 29 1.062294 GTCAGAGCTGTAGGTACGACG 59.938 57.143 0.00 0.00 36.52 5.12
29 30 0.248134 CAGAGCTGTAGGTACGACGC 60.248 60.000 0.00 0.00 36.52 5.19
30 31 0.675837 AGAGCTGTAGGTACGACGCA 60.676 55.000 0.00 0.00 36.52 5.24
31 32 0.522915 GAGCTGTAGGTACGACGCAC 60.523 60.000 0.00 0.00 36.52 5.34
41 42 3.383861 CGACGCACGTACATGCAT 58.616 55.556 15.00 0.00 46.47 3.96
42 43 1.707451 CGACGCACGTACATGCATT 59.293 52.632 15.00 0.00 46.47 3.56
43 44 0.094558 CGACGCACGTACATGCATTT 59.905 50.000 15.00 0.00 46.47 2.32
44 45 1.523501 GACGCACGTACATGCATTTG 58.476 50.000 15.00 0.00 46.47 2.32
45 46 0.871722 ACGCACGTACATGCATTTGT 59.128 45.000 15.00 0.30 46.47 2.83
46 47 1.136085 ACGCACGTACATGCATTTGTC 60.136 47.619 15.00 0.00 46.47 3.18
47 48 1.523501 GCACGTACATGCATTTGTCG 58.476 50.000 9.42 3.62 45.39 4.35
48 49 1.127766 GCACGTACATGCATTTGTCGA 59.872 47.619 9.42 0.00 45.39 4.20
49 50 2.223021 GCACGTACATGCATTTGTCGAT 60.223 45.455 9.42 2.40 45.39 3.59
50 51 3.597324 CACGTACATGCATTTGTCGATC 58.403 45.455 15.39 0.00 0.00 3.69
51 52 3.061965 CACGTACATGCATTTGTCGATCA 59.938 43.478 15.39 0.00 0.00 2.92
52 53 3.306973 ACGTACATGCATTTGTCGATCAG 59.693 43.478 15.39 0.00 0.00 2.90
53 54 3.551485 CGTACATGCATTTGTCGATCAGA 59.449 43.478 0.00 0.00 0.00 3.27
54 55 4.032786 CGTACATGCATTTGTCGATCAGAA 59.967 41.667 0.00 0.00 0.00 3.02
55 56 5.277011 CGTACATGCATTTGTCGATCAGAAT 60.277 40.000 0.00 0.00 0.00 2.40
56 57 5.165911 ACATGCATTTGTCGATCAGAATC 57.834 39.130 0.00 0.00 0.00 2.52
57 58 4.637091 ACATGCATTTGTCGATCAGAATCA 59.363 37.500 0.00 0.00 31.76 2.57
58 59 5.124297 ACATGCATTTGTCGATCAGAATCAA 59.876 36.000 0.00 0.00 31.76 2.57
59 60 4.973396 TGCATTTGTCGATCAGAATCAAC 58.027 39.130 0.00 0.00 31.76 3.18
60 61 4.696877 TGCATTTGTCGATCAGAATCAACT 59.303 37.500 0.00 0.00 31.76 3.16
61 62 5.181811 TGCATTTGTCGATCAGAATCAACTT 59.818 36.000 0.00 0.00 31.76 2.66
62 63 5.510674 GCATTTGTCGATCAGAATCAACTTG 59.489 40.000 0.00 0.00 31.76 3.16
63 64 4.668576 TTGTCGATCAGAATCAACTTGC 57.331 40.909 0.00 0.00 31.76 4.01
64 65 3.663025 TGTCGATCAGAATCAACTTGCA 58.337 40.909 0.00 0.00 31.76 4.08
65 66 3.681417 TGTCGATCAGAATCAACTTGCAG 59.319 43.478 0.00 0.00 31.76 4.41
66 67 3.063180 GTCGATCAGAATCAACTTGCAGG 59.937 47.826 0.00 0.00 31.76 4.85
67 68 2.353889 CGATCAGAATCAACTTGCAGGG 59.646 50.000 0.00 0.00 31.76 4.45
68 69 3.614092 GATCAGAATCAACTTGCAGGGA 58.386 45.455 0.00 0.00 31.76 4.20
69 70 3.507162 TCAGAATCAACTTGCAGGGAA 57.493 42.857 0.00 0.00 0.00 3.97
70 71 3.415212 TCAGAATCAACTTGCAGGGAAG 58.585 45.455 0.00 0.00 0.00 3.46
71 72 2.490903 CAGAATCAACTTGCAGGGAAGG 59.509 50.000 0.00 0.00 0.00 3.46
72 73 2.108952 AGAATCAACTTGCAGGGAAGGT 59.891 45.455 0.00 0.00 0.00 3.50
73 74 1.915141 ATCAACTTGCAGGGAAGGTG 58.085 50.000 11.80 11.80 41.33 4.00
74 75 0.823356 TCAACTTGCAGGGAAGGTGC 60.823 55.000 13.02 0.00 40.02 5.01
78 79 2.113774 TGCAGGGAAGGTGCACTG 59.886 61.111 17.98 6.99 45.96 3.66
80 81 2.113774 CAGGGAAGGTGCACTGCA 59.886 61.111 17.98 0.00 35.60 4.41
81 82 1.970114 CAGGGAAGGTGCACTGCAG 60.970 63.158 17.98 13.48 40.08 4.41
82 83 2.674380 GGGAAGGTGCACTGCAGG 60.674 66.667 19.93 8.27 40.08 4.85
83 84 3.368571 GGAAGGTGCACTGCAGGC 61.369 66.667 19.93 18.37 40.08 4.85
84 85 2.595463 GAAGGTGCACTGCAGGCA 60.595 61.111 21.35 21.35 40.08 4.75
89 90 2.357396 TGCACTGCAGGCACGTAG 60.357 61.111 21.35 3.73 36.11 3.51
90 91 3.121030 GCACTGCAGGCACGTAGG 61.121 66.667 19.93 0.00 0.00 3.18
91 92 2.343758 CACTGCAGGCACGTAGGT 59.656 61.111 19.93 0.00 0.00 3.08
100 101 4.347096 CACGTAGGTGCCACGAAA 57.653 55.556 15.94 0.00 41.91 3.46
101 102 2.835605 CACGTAGGTGCCACGAAAT 58.164 52.632 15.94 0.00 41.91 2.17
102 103 0.719465 CACGTAGGTGCCACGAAATC 59.281 55.000 15.94 0.00 41.91 2.17
103 104 0.734942 ACGTAGGTGCCACGAAATCG 60.735 55.000 15.94 0.48 41.91 3.34
104 105 0.457166 CGTAGGTGCCACGAAATCGA 60.457 55.000 10.16 0.00 41.91 3.59
105 106 0.997196 GTAGGTGCCACGAAATCGAC 59.003 55.000 10.16 0.00 43.02 4.20
106 107 0.892755 TAGGTGCCACGAAATCGACT 59.107 50.000 10.16 1.04 43.02 4.18
107 108 0.034896 AGGTGCCACGAAATCGACTT 59.965 50.000 10.16 0.00 43.02 3.01
108 109 0.165944 GGTGCCACGAAATCGACTTG 59.834 55.000 10.16 0.00 43.02 3.16
109 110 0.165944 GTGCCACGAAATCGACTTGG 59.834 55.000 10.16 8.09 43.02 3.61
110 111 0.953471 TGCCACGAAATCGACTTGGG 60.953 55.000 10.16 4.26 43.02 4.12
111 112 1.794222 CCACGAAATCGACTTGGGC 59.206 57.895 10.16 0.00 43.02 5.36
112 113 0.953471 CCACGAAATCGACTTGGGCA 60.953 55.000 10.16 0.00 43.02 5.36
113 114 0.165944 CACGAAATCGACTTGGGCAC 59.834 55.000 10.16 0.00 43.02 5.01
114 115 1.289109 ACGAAATCGACTTGGGCACG 61.289 55.000 10.16 0.00 43.02 5.34
115 116 1.289109 CGAAATCGACTTGGGCACGT 61.289 55.000 0.00 0.00 43.02 4.49
116 117 1.717194 GAAATCGACTTGGGCACGTA 58.283 50.000 0.00 0.00 0.00 3.57
117 118 1.392510 GAAATCGACTTGGGCACGTAC 59.607 52.381 0.00 0.00 0.00 3.67
118 119 0.319083 AATCGACTTGGGCACGTACA 59.681 50.000 0.00 0.00 0.00 2.90
119 120 0.535335 ATCGACTTGGGCACGTACAT 59.465 50.000 0.00 0.00 0.00 2.29
120 121 0.389296 TCGACTTGGGCACGTACATG 60.389 55.000 0.00 0.00 0.00 3.21
121 122 0.389296 CGACTTGGGCACGTACATGA 60.389 55.000 0.00 0.00 0.00 3.07
122 123 1.803334 GACTTGGGCACGTACATGAA 58.197 50.000 0.00 0.00 0.00 2.57
123 124 1.463444 GACTTGGGCACGTACATGAAC 59.537 52.381 0.00 0.00 0.00 3.18
124 125 0.802494 CTTGGGCACGTACATGAACC 59.198 55.000 0.00 0.00 0.00 3.62
125 126 0.606944 TTGGGCACGTACATGAACCC 60.607 55.000 0.00 0.00 37.88 4.11
126 127 1.298667 GGGCACGTACATGAACCCT 59.701 57.895 0.00 0.00 34.34 4.34
127 128 0.538118 GGGCACGTACATGAACCCTA 59.462 55.000 0.00 0.00 34.34 3.53
128 129 1.648504 GGCACGTACATGAACCCTAC 58.351 55.000 0.00 0.00 0.00 3.18
129 130 1.206371 GGCACGTACATGAACCCTACT 59.794 52.381 0.00 0.00 0.00 2.57
130 131 2.537401 GCACGTACATGAACCCTACTC 58.463 52.381 0.00 0.00 0.00 2.59
131 132 2.793933 CACGTACATGAACCCTACTCG 58.206 52.381 0.00 0.00 0.00 4.18
132 133 1.747355 ACGTACATGAACCCTACTCGG 59.253 52.381 0.00 0.00 0.00 4.63
133 134 1.747355 CGTACATGAACCCTACTCGGT 59.253 52.381 0.00 0.00 37.93 4.69
134 135 2.223433 CGTACATGAACCCTACTCGGTC 60.223 54.545 0.00 0.00 33.98 4.79
135 136 1.933021 ACATGAACCCTACTCGGTCA 58.067 50.000 0.00 0.00 33.98 4.02
136 137 1.549170 ACATGAACCCTACTCGGTCAC 59.451 52.381 0.00 0.00 33.98 3.67
137 138 0.815734 ATGAACCCTACTCGGTCACG 59.184 55.000 0.00 0.00 42.74 4.35
138 139 1.153881 GAACCCTACTCGGTCACGC 60.154 63.158 0.00 0.00 40.69 5.34
139 140 2.554074 GAACCCTACTCGGTCACGCC 62.554 65.000 0.00 0.00 40.69 5.68
140 141 2.754658 CCCTACTCGGTCACGCCT 60.755 66.667 0.00 0.00 40.69 5.52
141 142 2.772691 CCCTACTCGGTCACGCCTC 61.773 68.421 0.00 0.00 40.69 4.70
142 143 2.044555 CCTACTCGGTCACGCCTCA 61.045 63.158 0.00 0.00 40.69 3.86
143 144 1.136984 CTACTCGGTCACGCCTCAC 59.863 63.158 0.00 0.00 40.69 3.51
166 167 4.260355 CGACCGGCCGAGCGATAA 62.260 66.667 30.73 0.00 0.00 1.75
167 168 2.354773 GACCGGCCGAGCGATAAG 60.355 66.667 30.73 9.82 0.00 1.73
168 169 3.135056 GACCGGCCGAGCGATAAGT 62.135 63.158 30.73 13.66 0.00 2.24
169 170 1.789078 GACCGGCCGAGCGATAAGTA 61.789 60.000 30.73 0.00 0.00 2.24
170 171 1.177256 ACCGGCCGAGCGATAAGTAT 61.177 55.000 30.73 0.00 0.00 2.12
171 172 0.456312 CCGGCCGAGCGATAAGTATC 60.456 60.000 30.73 0.00 0.00 2.24
172 173 0.522180 CGGCCGAGCGATAAGTATCT 59.478 55.000 24.07 0.00 0.00 1.98
173 174 1.466024 CGGCCGAGCGATAAGTATCTC 60.466 57.143 24.07 0.00 0.00 2.75
174 175 1.466024 GGCCGAGCGATAAGTATCTCG 60.466 57.143 3.79 3.79 37.92 4.04
175 176 1.463831 GCCGAGCGATAAGTATCTCGA 59.536 52.381 11.45 0.00 37.05 4.04
176 177 2.725452 GCCGAGCGATAAGTATCTCGAC 60.725 54.545 11.45 0.00 37.05 4.20
177 178 2.159680 CCGAGCGATAAGTATCTCGACC 60.160 54.545 11.45 0.00 37.05 4.79
178 179 2.479275 CGAGCGATAAGTATCTCGACCA 59.521 50.000 4.69 0.00 37.05 4.02
179 180 3.664798 CGAGCGATAAGTATCTCGACCAC 60.665 52.174 4.69 0.00 37.05 4.16
180 181 2.223611 AGCGATAAGTATCTCGACCACG 59.776 50.000 0.00 0.00 37.05 4.94
181 182 2.222678 GCGATAAGTATCTCGACCACGA 59.777 50.000 0.00 0.00 46.56 4.35
189 190 3.047735 TCGACCACGAGCACATGT 58.952 55.556 0.00 0.00 43.81 3.21
190 191 2.259281 TCGACCACGAGCACATGTA 58.741 52.632 0.00 0.00 43.81 2.29
191 192 0.815095 TCGACCACGAGCACATGTAT 59.185 50.000 0.00 0.00 43.81 2.29
192 193 0.923403 CGACCACGAGCACATGTATG 59.077 55.000 0.00 0.00 42.66 2.39
193 194 1.290203 GACCACGAGCACATGTATGG 58.710 55.000 0.00 4.45 0.00 2.74
194 195 0.613260 ACCACGAGCACATGTATGGT 59.387 50.000 0.00 5.10 35.60 3.55
195 196 1.290203 CCACGAGCACATGTATGGTC 58.710 55.000 0.00 1.36 42.47 4.02
196 197 1.290203 CACGAGCACATGTATGGTCC 58.710 55.000 0.00 0.00 42.85 4.46
197 198 0.901827 ACGAGCACATGTATGGTCCA 59.098 50.000 0.00 0.00 42.85 4.02
198 199 1.134699 ACGAGCACATGTATGGTCCAG 60.135 52.381 0.00 0.00 42.85 3.86
199 200 1.807755 CGAGCACATGTATGGTCCAGG 60.808 57.143 0.00 0.00 42.85 4.45
200 201 0.107017 AGCACATGTATGGTCCAGGC 60.107 55.000 0.00 0.00 0.00 4.85
201 202 1.439353 GCACATGTATGGTCCAGGCG 61.439 60.000 0.00 0.00 0.00 5.52
202 203 1.153168 ACATGTATGGTCCAGGCGC 60.153 57.895 0.00 0.00 0.00 6.53
203 204 1.146930 CATGTATGGTCCAGGCGCT 59.853 57.895 7.64 0.00 0.00 5.92
204 205 0.392706 CATGTATGGTCCAGGCGCTA 59.607 55.000 7.64 0.00 0.00 4.26
205 206 0.681733 ATGTATGGTCCAGGCGCTAG 59.318 55.000 7.64 0.00 0.00 3.42
206 207 1.301009 GTATGGTCCAGGCGCTAGC 60.301 63.158 7.64 4.06 44.18 3.42
216 217 2.728817 GCGCTAGCCGTATGTCCT 59.271 61.111 9.66 0.00 39.71 3.85
217 218 1.371881 GCGCTAGCCGTATGTCCTC 60.372 63.158 9.66 0.00 39.71 3.71
218 219 1.797211 GCGCTAGCCGTATGTCCTCT 61.797 60.000 9.66 0.00 39.71 3.69
219 220 0.238817 CGCTAGCCGTATGTCCTCTC 59.761 60.000 9.66 0.00 0.00 3.20
220 221 0.599060 GCTAGCCGTATGTCCTCTCC 59.401 60.000 2.29 0.00 0.00 3.71
221 222 1.982660 CTAGCCGTATGTCCTCTCCA 58.017 55.000 0.00 0.00 0.00 3.86
222 223 1.609555 CTAGCCGTATGTCCTCTCCAC 59.390 57.143 0.00 0.00 0.00 4.02
223 224 1.043673 AGCCGTATGTCCTCTCCACC 61.044 60.000 0.00 0.00 0.00 4.61
224 225 1.734137 CCGTATGTCCTCTCCACCG 59.266 63.158 0.00 0.00 0.00 4.94
225 226 0.750546 CCGTATGTCCTCTCCACCGA 60.751 60.000 0.00 0.00 0.00 4.69
226 227 1.319541 CGTATGTCCTCTCCACCGAT 58.680 55.000 0.00 0.00 0.00 4.18
227 228 1.267261 CGTATGTCCTCTCCACCGATC 59.733 57.143 0.00 0.00 0.00 3.69
228 229 1.267261 GTATGTCCTCTCCACCGATCG 59.733 57.143 8.51 8.51 0.00 3.69
229 230 0.106669 ATGTCCTCTCCACCGATCGA 60.107 55.000 18.66 0.00 0.00 3.59
230 231 0.106669 TGTCCTCTCCACCGATCGAT 60.107 55.000 18.66 0.00 0.00 3.59
231 232 0.594110 GTCCTCTCCACCGATCGATC 59.406 60.000 18.66 15.68 0.00 3.69
232 233 0.474614 TCCTCTCCACCGATCGATCT 59.525 55.000 22.43 2.42 0.00 2.75
233 234 1.133761 TCCTCTCCACCGATCGATCTT 60.134 52.381 22.43 7.18 0.00 2.40
234 235 1.683917 CCTCTCCACCGATCGATCTTT 59.316 52.381 22.43 6.82 0.00 2.52
235 236 2.101582 CCTCTCCACCGATCGATCTTTT 59.898 50.000 22.43 4.29 0.00 2.27
236 237 3.119291 CTCTCCACCGATCGATCTTTTG 58.881 50.000 22.43 15.24 0.00 2.44
237 238 1.594862 CTCCACCGATCGATCTTTTGC 59.405 52.381 22.43 0.00 0.00 3.68
238 239 0.657840 CCACCGATCGATCTTTTGCC 59.342 55.000 22.43 0.00 0.00 4.52
245 246 1.290203 TCGATCTTTTGCCGCATCTC 58.710 50.000 0.00 0.00 0.00 2.75
252 253 0.939419 TTTGCCGCATCTCATCATCG 59.061 50.000 0.00 0.00 0.00 3.84
253 254 0.179076 TTGCCGCATCTCATCATCGT 60.179 50.000 0.00 0.00 0.00 3.73
254 255 0.598419 TGCCGCATCTCATCATCGTC 60.598 55.000 0.00 0.00 0.00 4.20
255 256 0.598419 GCCGCATCTCATCATCGTCA 60.598 55.000 0.00 0.00 0.00 4.35
262 263 4.689345 GCATCTCATCATCGTCATCATCAA 59.311 41.667 0.00 0.00 0.00 2.57
276 277 1.518572 ATCAACGATGGACGACGCC 60.519 57.895 0.00 0.00 45.77 5.68
281 282 4.077184 GATGGACGACGCCACCCA 62.077 66.667 12.22 7.15 41.56 4.51
325 332 3.147595 CCCGCGACATCCTCCTCA 61.148 66.667 8.23 0.00 0.00 3.86
326 333 2.502492 CCCGCGACATCCTCCTCAT 61.502 63.158 8.23 0.00 0.00 2.90
328 335 0.242286 CCGCGACATCCTCCTCATAG 59.758 60.000 8.23 0.00 0.00 2.23
330 337 1.068885 CGCGACATCCTCCTCATAGTC 60.069 57.143 0.00 0.00 0.00 2.59
335 342 1.271934 CATCCTCCTCATAGTCCTGCG 59.728 57.143 0.00 0.00 0.00 5.18
337 344 1.365633 CTCCTCATAGTCCTGCGCC 59.634 63.158 4.18 0.00 0.00 6.53
339 346 2.659897 CTCATAGTCCTGCGCCGC 60.660 66.667 4.18 0.00 0.00 6.53
340 347 4.221422 TCATAGTCCTGCGCCGCC 62.221 66.667 6.63 0.00 0.00 6.13
420 427 4.828925 GGCAGCGCAGTCCTCCTC 62.829 72.222 11.47 0.00 0.00 3.71
441 448 1.425428 CCGCTTCAACCGCATCTTC 59.575 57.895 0.00 0.00 0.00 2.87
444 451 1.982073 GCTTCAACCGCATCTTCCCG 61.982 60.000 0.00 0.00 0.00 5.14
446 453 3.508840 CAACCGCATCTTCCCGCC 61.509 66.667 0.00 0.00 0.00 6.13
477 484 1.503542 CGGCATCTTCACCAGCAAC 59.496 57.895 0.00 0.00 0.00 4.17
479 486 1.675714 CGGCATCTTCACCAGCAACTA 60.676 52.381 0.00 0.00 0.00 2.24
486 493 1.596752 CACCAGCAACTACGTGGCA 60.597 57.895 0.00 0.00 34.42 4.92
513 520 3.423154 GTCTTCACCGGCGGCAAG 61.423 66.667 28.71 26.51 0.00 4.01
639 646 4.101448 GCCTCCGTGCTGGACCAT 62.101 66.667 0.00 0.00 43.74 3.55
752 762 2.039216 TGCCCACTTCGTATTTCTGGAA 59.961 45.455 0.00 0.00 0.00 3.53
829 849 0.387929 ACGGACGATGACACAACTGT 59.612 50.000 0.00 0.00 0.00 3.55
873 893 1.205064 CCGCGTCAAAGCACAAGAG 59.795 57.895 4.92 0.00 36.85 2.85
899 922 0.667993 TGCGGCTTGTTTGAAGAAGG 59.332 50.000 0.00 0.00 30.60 3.46
936 959 3.491342 AGAGGGAAAAGAAGAACAAGGC 58.509 45.455 0.00 0.00 0.00 4.35
950 973 1.404035 ACAAGGCGAGGTTGAACAAAC 59.596 47.619 0.00 0.00 38.12 2.93
962 985 4.222114 GTTGAACAAACACATGAGCTAGC 58.778 43.478 6.62 6.62 38.75 3.42
1011 1034 5.531287 GGTGTTGTCTTTAATGGTGTTCTCT 59.469 40.000 0.00 0.00 0.00 3.10
1035 1058 1.891450 CGGACTAACAGGTGGGAGAGT 60.891 57.143 0.00 0.00 0.00 3.24
1055 1078 0.673644 CGAGAGTTTGTGCCCGGAAT 60.674 55.000 0.73 0.00 0.00 3.01
1183 5047 7.004555 TGCGGTAACCATATTCTTATGATCT 57.995 36.000 0.00 0.00 37.94 2.75
1227 5109 4.114015 TGATATACCCTGTGACGAGGAT 57.886 45.455 0.00 0.00 34.69 3.24
1291 5173 5.964477 AGTTATGAGAAAGGGATCCACTACA 59.036 40.000 15.23 6.10 0.00 2.74
1408 5290 5.826208 AGTCTTTTCGGTCACCAAATAAAGT 59.174 36.000 0.00 0.00 0.00 2.66
1475 5357 4.503734 CGAAAGCAATGAAGCAAAAGTCAA 59.496 37.500 0.00 0.00 36.85 3.18
1491 5374 3.323775 AGTCAACCTCTTTGAACCCCTA 58.676 45.455 0.00 0.00 46.09 3.53
1503 5386 0.475828 AACCCCTAAGTGGCCAGAGT 60.476 55.000 5.11 0.00 0.00 3.24
1566 5449 1.144057 CGGCTACATGTGGGACTCC 59.856 63.158 9.11 0.83 0.00 3.85
1630 5513 2.183555 CCGAGCCGTTGGAGTACC 59.816 66.667 0.00 0.00 0.00 3.34
1767 5650 0.034896 GGCTTGTCAAGGAAGTCGGA 59.965 55.000 14.40 0.00 0.00 4.55
1768 5651 1.339151 GGCTTGTCAAGGAAGTCGGAT 60.339 52.381 14.40 0.00 0.00 4.18
1845 5728 0.953471 CGTTGGGGAAGATGTCGCAA 60.953 55.000 0.00 0.00 40.96 4.85
1872 5760 0.175760 ATCGTAGCGAGCATGGTTGT 59.824 50.000 13.56 3.69 39.91 3.32
1878 5766 0.388520 GCGAGCATGGTTGTTTTCCC 60.389 55.000 13.56 0.00 0.00 3.97
1911 5799 2.127232 GCACGCTTTGCCGACTTC 60.127 61.111 0.00 0.00 46.63 3.01
1984 5874 9.835389 AAAAGAATGAAGGAAATTGTCATGAAA 57.165 25.926 0.00 0.00 32.38 2.69
2003 5893 5.886609 TGAAAATCAAGGAGGTGTTGGATA 58.113 37.500 0.00 0.00 0.00 2.59
2074 6294 8.434661 CAATAGATTGTAAAATGTTTGTGTGGC 58.565 33.333 0.00 0.00 33.22 5.01
2126 6394 6.702716 TCCGTCTTATGGTTTTTCTTGTTT 57.297 33.333 0.00 0.00 0.00 2.83
2131 6399 8.318167 CGTCTTATGGTTTTTCTTGTTTGTTTC 58.682 33.333 0.00 0.00 0.00 2.78
2217 6517 3.047796 CACGTCAGTACAGTAACACCAC 58.952 50.000 0.00 0.00 0.00 4.16
2255 6555 1.656587 AGTCCCTGCATGTTACCTGA 58.343 50.000 0.00 0.00 0.00 3.86
2278 6580 1.686464 GCTTAACTTTGGAAGCACGC 58.314 50.000 1.86 0.00 45.99 5.34
2279 6581 1.950472 CTTAACTTTGGAAGCACGCG 58.050 50.000 3.53 3.53 0.00 6.01
2301 6603 0.996462 CGTGTACCCACATTGCTACG 59.004 55.000 0.00 0.00 41.93 3.51
2307 6613 4.646040 TGTACCCACATTGCTACGTAGTAT 59.354 41.667 22.98 14.06 44.56 2.12
2318 6624 2.106332 GTAGTATGCACCGCCGCT 59.894 61.111 0.00 0.00 0.00 5.52
2340 6649 4.969196 CACGCGCCTGACAGTGGT 62.969 66.667 5.73 0.00 0.00 4.16
2428 6738 3.343788 GACTGGGACGAGCAGACGG 62.344 68.421 0.00 0.00 37.61 4.79
2470 6787 4.433615 TCTGGTAAAGCTAAGATTCTGCG 58.566 43.478 0.00 0.00 0.00 5.18
2473 6790 1.009829 AAAGCTAAGATTCTGCGGCG 58.990 50.000 0.51 0.51 0.00 6.46
2477 6794 1.153449 TAAGATTCTGCGGCGGTGG 60.153 57.895 9.78 0.00 0.00 4.61
2489 6806 2.048597 CGGTGGCACGCTGTTCTA 60.049 61.111 12.17 0.00 40.92 2.10
2490 6807 2.380410 CGGTGGCACGCTGTTCTAC 61.380 63.158 12.17 0.00 40.92 2.59
2491 6808 2.380410 GGTGGCACGCTGTTCTACG 61.380 63.158 12.17 0.00 39.78 3.51
2492 6809 1.663702 GTGGCACGCTGTTCTACGT 60.664 57.895 0.00 0.00 44.75 3.57
2496 6813 2.048503 ACGCTGTTCTACGTGGCC 60.049 61.111 0.00 0.00 41.76 5.36
2497 6814 3.179265 CGCTGTTCTACGTGGCCG 61.179 66.667 0.00 0.00 40.83 6.13
2498 6815 3.488090 GCTGTTCTACGTGGCCGC 61.488 66.667 6.11 6.11 37.70 6.53
2499 6816 2.813908 CTGTTCTACGTGGCCGCC 60.814 66.667 11.56 1.04 37.70 6.13
2500 6817 4.728102 TGTTCTACGTGGCCGCCG 62.728 66.667 11.56 12.14 37.70 6.46
2512 6829 4.266070 CCGCCGGTCGATCGACAT 62.266 66.667 39.98 0.00 46.20 3.06
2513 6830 2.278596 CGCCGGTCGATCGACATT 60.279 61.111 39.98 0.00 46.20 2.71
2514 6831 1.876714 CGCCGGTCGATCGACATTT 60.877 57.895 39.98 0.00 46.20 2.32
2515 6832 0.593008 CGCCGGTCGATCGACATTTA 60.593 55.000 39.98 9.21 46.20 1.40
2516 6833 1.779569 GCCGGTCGATCGACATTTAT 58.220 50.000 39.98 0.00 46.20 1.40
2517 6834 2.132762 GCCGGTCGATCGACATTTATT 58.867 47.619 39.98 0.00 46.20 1.40
2518 6835 2.155155 GCCGGTCGATCGACATTTATTC 59.845 50.000 39.98 24.12 46.20 1.75
2519 6836 2.729882 CCGGTCGATCGACATTTATTCC 59.270 50.000 39.98 24.12 46.20 3.01
2520 6837 2.404029 CGGTCGATCGACATTTATTCCG 59.596 50.000 39.98 30.00 46.20 4.30
2521 6838 2.155155 GGTCGATCGACATTTATTCCGC 59.845 50.000 39.98 20.63 46.20 5.54
2522 6839 3.050619 GTCGATCGACATTTATTCCGCT 58.949 45.455 36.61 0.00 44.02 5.52
2523 6840 3.119792 GTCGATCGACATTTATTCCGCTC 59.880 47.826 36.61 9.81 44.02 5.03
2524 6841 2.408704 CGATCGACATTTATTCCGCTCC 59.591 50.000 10.26 0.00 0.00 4.70
2525 6842 1.847818 TCGACATTTATTCCGCTCCG 58.152 50.000 0.00 0.00 0.00 4.63
2526 6843 1.135527 TCGACATTTATTCCGCTCCGT 59.864 47.619 0.00 0.00 0.00 4.69
2527 6844 1.931172 CGACATTTATTCCGCTCCGTT 59.069 47.619 0.00 0.00 0.00 4.44
2528 6845 2.034001 CGACATTTATTCCGCTCCGTTC 60.034 50.000 0.00 0.00 0.00 3.95
2529 6846 2.285977 ACATTTATTCCGCTCCGTTCC 58.714 47.619 0.00 0.00 0.00 3.62
2530 6847 1.260561 CATTTATTCCGCTCCGTTCCG 59.739 52.381 0.00 0.00 0.00 4.30
2531 6848 0.247185 TTTATTCCGCTCCGTTCCGT 59.753 50.000 0.00 0.00 0.00 4.69
2532 6849 0.179129 TTATTCCGCTCCGTTCCGTC 60.179 55.000 0.00 0.00 0.00 4.79
2533 6850 2.008268 TATTCCGCTCCGTTCCGTCC 62.008 60.000 0.00 0.00 0.00 4.79
2535 6852 4.143333 CCGCTCCGTTCCGTCCAT 62.143 66.667 0.00 0.00 0.00 3.41
2536 6853 2.582498 CGCTCCGTTCCGTCCATC 60.582 66.667 0.00 0.00 0.00 3.51
2537 6854 2.202892 GCTCCGTTCCGTCCATCC 60.203 66.667 0.00 0.00 0.00 3.51
2538 6855 2.104331 CTCCGTTCCGTCCATCCG 59.896 66.667 0.00 0.00 0.00 4.18
2539 6856 2.677524 TCCGTTCCGTCCATCCGT 60.678 61.111 0.00 0.00 0.00 4.69
2540 6857 2.202703 CCGTTCCGTCCATCCGTC 60.203 66.667 0.00 0.00 0.00 4.79
2541 6858 2.202703 CGTTCCGTCCATCCGTCC 60.203 66.667 0.00 0.00 0.00 4.79
2542 6859 2.975536 GTTCCGTCCATCCGTCCA 59.024 61.111 0.00 0.00 0.00 4.02
2543 6860 1.447314 GTTCCGTCCATCCGTCCAC 60.447 63.158 0.00 0.00 0.00 4.02
2544 6861 1.608336 TTCCGTCCATCCGTCCACT 60.608 57.895 0.00 0.00 0.00 4.00
2545 6862 1.884075 TTCCGTCCATCCGTCCACTG 61.884 60.000 0.00 0.00 0.00 3.66
2546 6863 2.348104 CCGTCCATCCGTCCACTGA 61.348 63.158 0.00 0.00 0.00 3.41
2547 6864 1.589630 CGTCCATCCGTCCACTGAA 59.410 57.895 0.00 0.00 0.00 3.02
2548 6865 0.458543 CGTCCATCCGTCCACTGAAG 60.459 60.000 0.00 0.00 0.00 3.02
2549 6866 0.895530 GTCCATCCGTCCACTGAAGA 59.104 55.000 0.00 0.00 0.00 2.87
2550 6867 1.275291 GTCCATCCGTCCACTGAAGAA 59.725 52.381 0.00 0.00 0.00 2.52
2551 6868 1.550524 TCCATCCGTCCACTGAAGAAG 59.449 52.381 0.00 0.00 0.00 2.85
2552 6869 1.550524 CCATCCGTCCACTGAAGAAGA 59.449 52.381 0.00 0.00 0.00 2.87
2553 6870 2.028112 CCATCCGTCCACTGAAGAAGAA 60.028 50.000 0.00 0.00 0.00 2.52
2554 6871 3.557054 CCATCCGTCCACTGAAGAAGAAA 60.557 47.826 0.00 0.00 0.00 2.52
2555 6872 3.830744 TCCGTCCACTGAAGAAGAAAA 57.169 42.857 0.00 0.00 0.00 2.29
2556 6873 4.145365 TCCGTCCACTGAAGAAGAAAAA 57.855 40.909 0.00 0.00 0.00 1.94
2557 6874 3.875134 TCCGTCCACTGAAGAAGAAAAAC 59.125 43.478 0.00 0.00 0.00 2.43
2558 6875 3.303132 CCGTCCACTGAAGAAGAAAAACG 60.303 47.826 0.00 0.00 0.00 3.60
2559 6876 3.618698 GTCCACTGAAGAAGAAAAACGC 58.381 45.455 0.00 0.00 0.00 4.84
2560 6877 2.286833 TCCACTGAAGAAGAAAAACGCG 59.713 45.455 3.53 3.53 0.00 6.01
2561 6878 2.036933 CACTGAAGAAGAAAAACGCGC 58.963 47.619 5.73 0.00 0.00 6.86
2562 6879 1.309108 CTGAAGAAGAAAAACGCGCG 58.691 50.000 30.96 30.96 0.00 6.86
2563 6880 0.041663 TGAAGAAGAAAAACGCGCGG 60.042 50.000 35.22 16.31 0.00 6.46
2564 6881 0.041576 GAAGAAGAAAAACGCGCGGT 60.042 50.000 35.22 28.24 0.00 5.68
2565 6882 1.192980 GAAGAAGAAAAACGCGCGGTA 59.807 47.619 35.22 0.00 0.00 4.02
2566 6883 0.788391 AGAAGAAAAACGCGCGGTAG 59.212 50.000 35.22 6.61 0.00 3.18
2567 6884 0.179233 GAAGAAAAACGCGCGGTAGG 60.179 55.000 35.22 6.16 0.00 3.18
2568 6885 1.571215 AAGAAAAACGCGCGGTAGGG 61.571 55.000 35.22 5.29 0.00 3.53
2569 6886 2.281002 AAAAACGCGCGGTAGGGT 60.281 55.556 35.22 9.94 39.03 4.34
2570 6887 1.005156 AAAAACGCGCGGTAGGGTA 60.005 52.632 35.22 0.00 36.22 3.69
2571 6888 1.015607 AAAAACGCGCGGTAGGGTAG 61.016 55.000 35.22 2.69 36.22 3.18
2572 6889 2.840717 AAAACGCGCGGTAGGGTAGG 62.841 60.000 35.22 1.83 36.22 3.18
2575 6892 4.587189 GCGCGGTAGGGTAGGCTG 62.587 72.222 8.83 0.00 0.00 4.85
2576 6893 3.145551 CGCGGTAGGGTAGGCTGT 61.146 66.667 0.00 0.00 0.00 4.40
2577 6894 2.499685 GCGGTAGGGTAGGCTGTG 59.500 66.667 0.00 0.00 0.00 3.66
2578 6895 2.356780 GCGGTAGGGTAGGCTGTGT 61.357 63.158 0.00 0.00 0.00 3.72
2579 6896 1.814527 CGGTAGGGTAGGCTGTGTC 59.185 63.158 0.00 0.00 0.00 3.67
2580 6897 0.968901 CGGTAGGGTAGGCTGTGTCA 60.969 60.000 0.00 0.00 0.00 3.58
2585 6902 1.544825 GGGTAGGCTGTGTCAGAGCA 61.545 60.000 22.23 1.11 38.27 4.26
2597 6914 5.620206 TGTGTCAGAGCAAGGAGAATAAAA 58.380 37.500 0.00 0.00 0.00 1.52
2598 6915 5.470098 TGTGTCAGAGCAAGGAGAATAAAAC 59.530 40.000 0.00 0.00 0.00 2.43
2599 6916 5.470098 GTGTCAGAGCAAGGAGAATAAAACA 59.530 40.000 0.00 0.00 0.00 2.83
2600 6917 6.150140 GTGTCAGAGCAAGGAGAATAAAACAT 59.850 38.462 0.00 0.00 0.00 2.71
2601 6918 6.149973 TGTCAGAGCAAGGAGAATAAAACATG 59.850 38.462 0.00 0.00 0.00 3.21
2602 6919 6.150140 GTCAGAGCAAGGAGAATAAAACATGT 59.850 38.462 0.00 0.00 0.00 3.21
2603 6920 7.334421 GTCAGAGCAAGGAGAATAAAACATGTA 59.666 37.037 0.00 0.00 0.00 2.29
2604 6921 7.550551 TCAGAGCAAGGAGAATAAAACATGTAG 59.449 37.037 0.00 0.00 0.00 2.74
2605 6922 7.335422 CAGAGCAAGGAGAATAAAACATGTAGT 59.665 37.037 0.00 0.00 0.00 2.73
2606 6923 8.540388 AGAGCAAGGAGAATAAAACATGTAGTA 58.460 33.333 0.00 0.00 0.00 1.82
2637 6954 2.903135 AGGCTTCTTCTGACTTGCTAGT 59.097 45.455 0.00 0.00 37.31 2.57
2639 6956 4.068599 GGCTTCTTCTGACTTGCTAGTTT 58.931 43.478 1.43 0.00 33.84 2.66
2640 6957 4.083590 GGCTTCTTCTGACTTGCTAGTTTG 60.084 45.833 1.43 0.00 33.84 2.93
2641 6958 4.612486 GCTTCTTCTGACTTGCTAGTTTGC 60.612 45.833 1.43 0.00 33.84 3.68
2644 6961 0.179240 CTGACTTGCTAGTTTGCGCG 60.179 55.000 0.00 0.00 33.84 6.86
2646 6963 2.202349 CTTGCTAGTTTGCGCGGC 60.202 61.111 8.83 0.29 35.36 6.53
2656 6973 3.613877 TTGCGCGGCCACAGGAATA 62.614 57.895 8.83 0.00 0.00 1.75
2668 6985 5.936956 GGCCACAGGAATAGAATCATCTTAG 59.063 44.000 0.00 0.00 37.10 2.18
2669 6986 5.411053 GCCACAGGAATAGAATCATCTTAGC 59.589 44.000 0.00 0.00 37.10 3.09
2670 6987 5.936956 CCACAGGAATAGAATCATCTTAGCC 59.063 44.000 0.00 0.00 37.10 3.93
2671 6988 6.239829 CCACAGGAATAGAATCATCTTAGCCT 60.240 42.308 0.00 0.00 37.10 4.58
2672 6989 6.873076 CACAGGAATAGAATCATCTTAGCCTC 59.127 42.308 0.00 0.00 37.10 4.70
2673 6990 6.786959 ACAGGAATAGAATCATCTTAGCCTCT 59.213 38.462 0.00 0.00 37.10 3.69
2674 6991 7.292120 ACAGGAATAGAATCATCTTAGCCTCTT 59.708 37.037 0.00 0.00 37.10 2.85
2675 6992 8.811017 CAGGAATAGAATCATCTTAGCCTCTTA 58.189 37.037 0.00 0.00 37.10 2.10
2676 6993 9.034800 AGGAATAGAATCATCTTAGCCTCTTAG 57.965 37.037 0.00 0.00 37.10 2.18
2677 6994 8.257306 GGAATAGAATCATCTTAGCCTCTTAGG 58.743 40.741 0.00 0.00 37.10 2.69
2690 7007 4.066646 CCTCTTAGGCCTTCTTTAGAGC 57.933 50.000 12.58 0.00 34.45 4.09
2691 7008 3.452627 CCTCTTAGGCCTTCTTTAGAGCA 59.547 47.826 12.58 0.00 34.45 4.26
2692 7009 4.102367 CCTCTTAGGCCTTCTTTAGAGCAT 59.898 45.833 12.58 0.00 34.45 3.79
2693 7010 5.283457 TCTTAGGCCTTCTTTAGAGCATC 57.717 43.478 12.58 0.00 0.00 3.91
2707 7024 1.129437 GAGCATCTTCAGTTGTTCGGC 59.871 52.381 0.00 0.00 0.00 5.54
2708 7025 0.179215 GCATCTTCAGTTGTTCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
2709 7026 1.148310 CATCTTCAGTTGTTCGGCGT 58.852 50.000 6.85 0.00 0.00 5.68
2710 7027 1.126846 CATCTTCAGTTGTTCGGCGTC 59.873 52.381 6.85 2.07 0.00 5.19
2711 7028 0.599204 TCTTCAGTTGTTCGGCGTCC 60.599 55.000 6.85 0.00 0.00 4.79
2712 7029 1.566018 CTTCAGTTGTTCGGCGTCCC 61.566 60.000 6.85 0.00 0.00 4.46
2713 7030 2.280524 CAGTTGTTCGGCGTCCCA 60.281 61.111 6.85 0.00 0.00 4.37
2714 7031 2.030562 AGTTGTTCGGCGTCCCAG 59.969 61.111 6.85 0.00 0.00 4.45
2715 7032 3.047877 GTTGTTCGGCGTCCCAGG 61.048 66.667 6.85 0.00 0.00 4.45
2716 7033 3.235481 TTGTTCGGCGTCCCAGGA 61.235 61.111 6.85 0.00 0.00 3.86
2717 7034 2.809307 TTGTTCGGCGTCCCAGGAA 61.809 57.895 6.85 0.00 0.00 3.36
2718 7035 2.119484 TTGTTCGGCGTCCCAGGAAT 62.119 55.000 6.85 0.00 0.00 3.01
2719 7036 2.106683 GTTCGGCGTCCCAGGAATG 61.107 63.158 6.85 0.00 0.00 2.67
2720 7037 2.287274 TTCGGCGTCCCAGGAATGA 61.287 57.895 6.85 0.00 0.00 2.57
2721 7038 1.832719 TTCGGCGTCCCAGGAATGAA 61.833 55.000 6.85 0.00 0.00 2.57
2722 7039 1.376683 CGGCGTCCCAGGAATGAAA 60.377 57.895 0.00 0.00 0.00 2.69
2723 7040 0.748005 CGGCGTCCCAGGAATGAAAT 60.748 55.000 0.00 0.00 0.00 2.17
2724 7041 1.474320 CGGCGTCCCAGGAATGAAATA 60.474 52.381 0.00 0.00 0.00 1.40
2725 7042 2.222027 GGCGTCCCAGGAATGAAATAG 58.778 52.381 0.00 0.00 0.00 1.73
2726 7043 1.604278 GCGTCCCAGGAATGAAATAGC 59.396 52.381 0.00 0.00 0.00 2.97
2727 7044 2.917933 CGTCCCAGGAATGAAATAGCA 58.082 47.619 0.00 0.00 0.00 3.49
2728 7045 3.480470 CGTCCCAGGAATGAAATAGCAT 58.520 45.455 0.00 0.00 0.00 3.79
2729 7046 3.499918 CGTCCCAGGAATGAAATAGCATC 59.500 47.826 0.00 0.00 0.00 3.91
2730 7047 4.723309 GTCCCAGGAATGAAATAGCATCT 58.277 43.478 0.00 0.00 0.00 2.90
2731 7048 5.136105 GTCCCAGGAATGAAATAGCATCTT 58.864 41.667 0.00 0.00 0.00 2.40
2732 7049 5.240403 GTCCCAGGAATGAAATAGCATCTTC 59.760 44.000 0.00 0.00 0.00 2.87
2733 7050 5.133322 TCCCAGGAATGAAATAGCATCTTCT 59.867 40.000 0.00 0.00 0.00 2.85
2734 7051 5.241064 CCCAGGAATGAAATAGCATCTTCTG 59.759 44.000 0.00 0.00 0.00 3.02
2735 7052 6.060136 CCAGGAATGAAATAGCATCTTCTGA 58.940 40.000 0.00 0.00 0.00 3.27
2736 7053 6.205076 CCAGGAATGAAATAGCATCTTCTGAG 59.795 42.308 0.00 0.00 0.00 3.35
2737 7054 6.205076 CAGGAATGAAATAGCATCTTCTGAGG 59.795 42.308 0.00 0.00 0.00 3.86
2742 7059 3.824810 GCATCTTCTGAGGCCAGC 58.175 61.111 5.01 0.00 43.37 4.85
2743 7060 1.823041 GCATCTTCTGAGGCCAGCC 60.823 63.158 5.01 0.00 43.37 4.85
2744 7061 1.523258 CATCTTCTGAGGCCAGCCG 60.523 63.158 5.01 0.00 40.20 5.52
2745 7062 2.739996 ATCTTCTGAGGCCAGCCGG 61.740 63.158 5.01 0.00 40.20 6.13
2755 7072 2.408835 CCAGCCGGCGCTATTTTG 59.591 61.111 23.20 12.00 46.25 2.44
2756 7073 2.408835 CAGCCGGCGCTATTTTGG 59.591 61.111 23.20 0.98 46.25 3.28
2757 7074 3.518068 AGCCGGCGCTATTTTGGC 61.518 61.111 23.20 11.51 46.08 4.52
2758 7075 3.821055 GCCGGCGCTATTTTGGCA 61.821 61.111 12.58 0.00 45.06 4.92
2759 7076 3.119193 CCGGCGCTATTTTGGCAT 58.881 55.556 7.64 0.00 0.00 4.40
2760 7077 1.299316 CCGGCGCTATTTTGGCATG 60.299 57.895 7.64 0.00 0.00 4.06
2761 7078 1.299316 CGGCGCTATTTTGGCATGG 60.299 57.895 7.64 0.00 0.00 3.66
2762 7079 1.067916 GGCGCTATTTTGGCATGGG 59.932 57.895 7.64 0.00 0.00 4.00
2763 7080 1.067916 GCGCTATTTTGGCATGGGG 59.932 57.895 0.00 0.00 0.00 4.96
2764 7081 1.741525 CGCTATTTTGGCATGGGGG 59.258 57.895 0.00 0.00 0.00 5.40
2765 7082 1.447217 GCTATTTTGGCATGGGGGC 59.553 57.895 0.00 0.00 43.73 5.80
2779 7096 4.011517 GGGCGGTCGGGTTCTCAA 62.012 66.667 0.00 0.00 0.00 3.02
2780 7097 2.741211 GGCGGTCGGGTTCTCAAC 60.741 66.667 0.00 0.00 0.00 3.18
2789 7106 4.373771 GTTCTCAACCACCGTCCC 57.626 61.111 0.00 0.00 0.00 4.46
2790 7107 1.448497 GTTCTCAACCACCGTCCCA 59.552 57.895 0.00 0.00 0.00 4.37
2791 7108 0.602905 GTTCTCAACCACCGTCCCAG 60.603 60.000 0.00 0.00 0.00 4.45
2792 7109 1.764571 TTCTCAACCACCGTCCCAGG 61.765 60.000 0.00 0.00 37.30 4.45
2794 7111 2.032071 CAACCACCGTCCCAGGTC 59.968 66.667 0.00 0.00 43.89 3.85
2795 7112 2.446994 AACCACCGTCCCAGGTCA 60.447 61.111 0.00 0.00 43.89 4.02
2796 7113 2.516888 AACCACCGTCCCAGGTCAG 61.517 63.158 0.00 0.00 43.89 3.51
2797 7114 4.394712 CCACCGTCCCAGGTCAGC 62.395 72.222 0.00 0.00 43.89 4.26
2798 7115 4.394712 CACCGTCCCAGGTCAGCC 62.395 72.222 0.00 0.00 43.89 4.85
2800 7117 3.775654 CCGTCCCAGGTCAGCCTC 61.776 72.222 0.00 0.00 44.97 4.70
2801 7118 2.681778 CGTCCCAGGTCAGCCTCT 60.682 66.667 0.00 0.00 44.97 3.69
2802 7119 1.379977 CGTCCCAGGTCAGCCTCTA 60.380 63.158 0.00 0.00 44.97 2.43
2803 7120 1.388065 CGTCCCAGGTCAGCCTCTAG 61.388 65.000 0.00 0.00 44.97 2.43
2804 7121 0.033011 GTCCCAGGTCAGCCTCTAGA 60.033 60.000 0.00 0.00 44.97 2.43
2805 7122 0.033011 TCCCAGGTCAGCCTCTAGAC 60.033 60.000 0.00 0.00 44.97 2.59
2806 7123 1.388065 CCCAGGTCAGCCTCTAGACG 61.388 65.000 0.00 0.00 44.97 4.18
2807 7124 1.435515 CAGGTCAGCCTCTAGACGC 59.564 63.158 5.66 5.66 44.97 5.19
2808 7125 1.755008 AGGTCAGCCTCTAGACGCC 60.755 63.158 9.75 0.00 42.67 5.68
2809 7126 2.052690 GGTCAGCCTCTAGACGCCA 61.053 63.158 9.75 0.00 35.63 5.69
2810 7127 1.395826 GGTCAGCCTCTAGACGCCAT 61.396 60.000 9.75 0.00 35.63 4.40
2811 7128 0.461961 GTCAGCCTCTAGACGCCATT 59.538 55.000 9.75 0.00 0.00 3.16
2812 7129 1.134670 GTCAGCCTCTAGACGCCATTT 60.135 52.381 9.75 0.00 0.00 2.32
2813 7130 1.555075 TCAGCCTCTAGACGCCATTTT 59.445 47.619 9.75 0.00 0.00 1.82
2814 7131 2.027192 TCAGCCTCTAGACGCCATTTTT 60.027 45.455 9.75 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.613977 CCTACAGCTCTGACCAACTTGG 60.614 54.545 6.24 6.24 45.02 3.61
1 2 2.037772 ACCTACAGCTCTGACCAACTTG 59.962 50.000 3.60 0.00 0.00 3.16
4 5 2.415625 CGTACCTACAGCTCTGACCAAC 60.416 54.545 3.60 0.00 0.00 3.77
5 6 1.816835 CGTACCTACAGCTCTGACCAA 59.183 52.381 3.60 0.00 0.00 3.67
6 7 1.003928 TCGTACCTACAGCTCTGACCA 59.996 52.381 3.60 0.00 0.00 4.02
7 8 1.401199 GTCGTACCTACAGCTCTGACC 59.599 57.143 3.60 0.00 0.00 4.02
8 9 1.062294 CGTCGTACCTACAGCTCTGAC 59.938 57.143 3.60 0.00 0.00 3.51
9 10 1.366679 CGTCGTACCTACAGCTCTGA 58.633 55.000 3.60 0.00 0.00 3.27
10 11 0.248134 GCGTCGTACCTACAGCTCTG 60.248 60.000 0.00 0.00 0.00 3.35
11 12 0.675837 TGCGTCGTACCTACAGCTCT 60.676 55.000 0.00 0.00 0.00 4.09
12 13 0.522915 GTGCGTCGTACCTACAGCTC 60.523 60.000 1.54 0.00 0.00 4.09
13 14 1.505353 GTGCGTCGTACCTACAGCT 59.495 57.895 1.54 0.00 0.00 4.24
14 15 1.866496 CGTGCGTCGTACCTACAGC 60.866 63.158 7.92 0.00 34.52 4.40
15 16 4.354935 CGTGCGTCGTACCTACAG 57.645 61.111 7.92 0.00 34.52 2.74
28 29 1.127766 TCGACAAATGCATGTACGTGC 59.872 47.619 29.29 29.29 45.25 5.34
29 30 3.061965 TGATCGACAAATGCATGTACGTG 59.938 43.478 10.89 10.89 32.57 4.49
30 31 3.258228 TGATCGACAAATGCATGTACGT 58.742 40.909 0.00 0.00 32.57 3.57
31 32 3.551485 TCTGATCGACAAATGCATGTACG 59.449 43.478 0.00 4.57 32.57 3.67
32 33 5.469373 TTCTGATCGACAAATGCATGTAC 57.531 39.130 0.00 0.00 32.57 2.90
33 34 5.816777 TGATTCTGATCGACAAATGCATGTA 59.183 36.000 0.00 0.00 34.91 2.29
34 35 4.637091 TGATTCTGATCGACAAATGCATGT 59.363 37.500 0.00 0.00 34.91 3.21
35 36 5.164606 TGATTCTGATCGACAAATGCATG 57.835 39.130 0.00 0.00 34.91 4.06
36 37 5.356190 AGTTGATTCTGATCGACAAATGCAT 59.644 36.000 0.00 0.00 45.46 3.96
37 38 4.696877 AGTTGATTCTGATCGACAAATGCA 59.303 37.500 8.92 0.00 45.46 3.96
38 39 5.227238 AGTTGATTCTGATCGACAAATGC 57.773 39.130 8.92 0.00 45.46 3.56
39 40 5.510674 GCAAGTTGATTCTGATCGACAAATG 59.489 40.000 7.16 6.33 45.46 2.32
40 41 5.181811 TGCAAGTTGATTCTGATCGACAAAT 59.818 36.000 7.16 0.00 45.46 2.32
41 42 4.514816 TGCAAGTTGATTCTGATCGACAAA 59.485 37.500 7.16 0.00 45.46 2.83
42 43 4.064388 TGCAAGTTGATTCTGATCGACAA 58.936 39.130 7.16 0.00 45.46 3.18
43 44 3.663025 TGCAAGTTGATTCTGATCGACA 58.337 40.909 7.16 0.00 45.46 4.35
44 45 3.063180 CCTGCAAGTTGATTCTGATCGAC 59.937 47.826 7.16 0.00 44.03 4.20
45 46 3.264947 CCTGCAAGTTGATTCTGATCGA 58.735 45.455 7.16 0.00 34.91 3.59
46 47 2.353889 CCCTGCAAGTTGATTCTGATCG 59.646 50.000 7.16 0.00 34.91 3.69
47 48 3.614092 TCCCTGCAAGTTGATTCTGATC 58.386 45.455 7.16 0.00 0.00 2.92
48 49 3.726557 TCCCTGCAAGTTGATTCTGAT 57.273 42.857 7.16 0.00 0.00 2.90
49 50 3.415212 CTTCCCTGCAAGTTGATTCTGA 58.585 45.455 7.16 0.00 0.00 3.27
50 51 2.490903 CCTTCCCTGCAAGTTGATTCTG 59.509 50.000 7.16 0.00 0.00 3.02
51 52 2.108952 ACCTTCCCTGCAAGTTGATTCT 59.891 45.455 7.16 0.00 0.00 2.40
52 53 2.229784 CACCTTCCCTGCAAGTTGATTC 59.770 50.000 7.16 0.00 0.00 2.52
53 54 2.242043 CACCTTCCCTGCAAGTTGATT 58.758 47.619 7.16 0.00 0.00 2.57
54 55 1.915141 CACCTTCCCTGCAAGTTGAT 58.085 50.000 7.16 0.00 0.00 2.57
55 56 0.823356 GCACCTTCCCTGCAAGTTGA 60.823 55.000 7.16 0.00 34.56 3.18
56 57 1.108727 TGCACCTTCCCTGCAAGTTG 61.109 55.000 0.00 0.00 41.70 3.16
57 58 1.109323 GTGCACCTTCCCTGCAAGTT 61.109 55.000 5.22 0.00 46.04 2.66
58 59 1.529244 GTGCACCTTCCCTGCAAGT 60.529 57.895 5.22 0.00 46.04 3.16
59 60 1.228367 AGTGCACCTTCCCTGCAAG 60.228 57.895 14.63 0.00 46.04 4.01
60 61 1.529010 CAGTGCACCTTCCCTGCAA 60.529 57.895 14.63 0.00 46.04 4.08
61 62 2.113774 CAGTGCACCTTCCCTGCA 59.886 61.111 14.63 0.00 42.42 4.41
62 63 3.368571 GCAGTGCACCTTCCCTGC 61.369 66.667 14.63 12.11 42.94 4.85
63 64 1.970114 CTGCAGTGCACCTTCCCTG 60.970 63.158 15.37 5.08 33.79 4.45
64 65 2.433446 CTGCAGTGCACCTTCCCT 59.567 61.111 15.37 0.00 33.79 4.20
65 66 2.674380 CCTGCAGTGCACCTTCCC 60.674 66.667 15.37 0.00 33.79 3.97
66 67 3.368571 GCCTGCAGTGCACCTTCC 61.369 66.667 15.37 0.00 33.79 3.46
67 68 2.595463 TGCCTGCAGTGCACCTTC 60.595 61.111 21.35 3.28 33.79 3.46
72 73 2.357396 CTACGTGCCTGCAGTGCA 60.357 61.111 21.35 21.35 36.92 4.57
73 74 3.121030 CCTACGTGCCTGCAGTGC 61.121 66.667 13.81 15.86 0.00 4.40
74 75 2.029288 CACCTACGTGCCTGCAGTG 61.029 63.158 13.81 5.37 32.04 3.66
75 76 2.343758 CACCTACGTGCCTGCAGT 59.656 61.111 13.81 0.00 32.04 4.40
83 84 0.719465 GATTTCGTGGCACCTACGTG 59.281 55.000 12.86 0.00 41.91 4.49
84 85 0.734942 CGATTTCGTGGCACCTACGT 60.735 55.000 12.86 0.00 41.91 3.57
85 86 0.457166 TCGATTTCGTGGCACCTACG 60.457 55.000 12.86 10.90 42.56 3.51
86 87 0.997196 GTCGATTTCGTGGCACCTAC 59.003 55.000 12.86 0.00 40.80 3.18
87 88 0.892755 AGTCGATTTCGTGGCACCTA 59.107 50.000 12.86 0.00 40.80 3.08
88 89 0.034896 AAGTCGATTTCGTGGCACCT 59.965 50.000 12.86 0.00 40.80 4.00
89 90 0.165944 CAAGTCGATTTCGTGGCACC 59.834 55.000 12.86 0.00 40.80 5.01
90 91 0.165944 CCAAGTCGATTTCGTGGCAC 59.834 55.000 7.79 7.79 40.80 5.01
91 92 0.953471 CCCAAGTCGATTTCGTGGCA 60.953 55.000 0.00 0.00 40.80 4.92
92 93 1.794222 CCCAAGTCGATTTCGTGGC 59.206 57.895 0.00 0.00 40.80 5.01
93 94 0.953471 TGCCCAAGTCGATTTCGTGG 60.953 55.000 0.00 0.00 40.80 4.94
94 95 0.165944 GTGCCCAAGTCGATTTCGTG 59.834 55.000 0.00 0.00 40.80 4.35
95 96 1.289109 CGTGCCCAAGTCGATTTCGT 61.289 55.000 0.00 0.00 40.80 3.85
96 97 1.289109 ACGTGCCCAAGTCGATTTCG 61.289 55.000 0.00 0.00 41.45 3.46
97 98 1.392510 GTACGTGCCCAAGTCGATTTC 59.607 52.381 0.00 0.00 0.00 2.17
98 99 1.270412 TGTACGTGCCCAAGTCGATTT 60.270 47.619 0.00 0.00 0.00 2.17
99 100 0.319083 TGTACGTGCCCAAGTCGATT 59.681 50.000 0.00 0.00 0.00 3.34
100 101 0.535335 ATGTACGTGCCCAAGTCGAT 59.465 50.000 0.00 0.00 0.00 3.59
101 102 0.389296 CATGTACGTGCCCAAGTCGA 60.389 55.000 1.29 0.00 0.00 4.20
102 103 0.389296 TCATGTACGTGCCCAAGTCG 60.389 55.000 10.38 0.00 0.00 4.18
103 104 1.463444 GTTCATGTACGTGCCCAAGTC 59.537 52.381 10.38 0.00 0.00 3.01
104 105 1.519408 GTTCATGTACGTGCCCAAGT 58.481 50.000 10.38 0.00 0.00 3.16
105 106 0.802494 GGTTCATGTACGTGCCCAAG 59.198 55.000 10.38 0.00 0.00 3.61
106 107 0.606944 GGGTTCATGTACGTGCCCAA 60.607 55.000 20.27 5.07 36.25 4.12
107 108 1.003112 GGGTTCATGTACGTGCCCA 60.003 57.895 20.27 2.51 36.25 5.36
108 109 0.538118 TAGGGTTCATGTACGTGCCC 59.462 55.000 18.44 18.44 36.46 5.36
109 110 1.206371 AGTAGGGTTCATGTACGTGCC 59.794 52.381 10.38 6.69 0.00 5.01
110 111 2.537401 GAGTAGGGTTCATGTACGTGC 58.463 52.381 10.38 0.00 0.00 5.34
111 112 2.479049 CCGAGTAGGGTTCATGTACGTG 60.479 54.545 8.90 8.90 35.97 4.49
112 113 1.747355 CCGAGTAGGGTTCATGTACGT 59.253 52.381 0.00 0.00 35.97 3.57
113 114 1.747355 ACCGAGTAGGGTTCATGTACG 59.253 52.381 0.00 0.00 46.96 3.67
114 115 2.756760 TGACCGAGTAGGGTTCATGTAC 59.243 50.000 0.00 0.00 46.96 2.90
115 116 2.756760 GTGACCGAGTAGGGTTCATGTA 59.243 50.000 0.00 0.00 46.96 2.29
116 117 1.549170 GTGACCGAGTAGGGTTCATGT 59.451 52.381 0.00 0.00 46.96 3.21
117 118 1.469251 CGTGACCGAGTAGGGTTCATG 60.469 57.143 0.00 0.00 46.96 3.07
118 119 0.815734 CGTGACCGAGTAGGGTTCAT 59.184 55.000 0.00 0.00 46.96 2.57
119 120 1.870055 GCGTGACCGAGTAGGGTTCA 61.870 60.000 0.00 0.00 46.96 3.18
120 121 1.153881 GCGTGACCGAGTAGGGTTC 60.154 63.158 0.00 0.00 46.96 3.62
121 122 2.643232 GGCGTGACCGAGTAGGGTT 61.643 63.158 0.00 0.00 46.96 4.11
122 123 3.066814 GGCGTGACCGAGTAGGGT 61.067 66.667 0.00 0.00 46.96 4.34
123 124 2.754658 AGGCGTGACCGAGTAGGG 60.755 66.667 0.00 0.00 46.96 3.53
124 125 2.044555 TGAGGCGTGACCGAGTAGG 61.045 63.158 0.00 0.00 46.52 3.18
125 126 1.136984 GTGAGGCGTGACCGAGTAG 59.863 63.158 0.00 0.00 46.52 2.57
126 127 2.683859 CGTGAGGCGTGACCGAGTA 61.684 63.158 0.00 0.00 46.52 2.59
127 128 4.039357 CGTGAGGCGTGACCGAGT 62.039 66.667 0.00 0.00 46.52 4.18
149 150 4.260355 TTATCGCTCGGCCGGTCG 62.260 66.667 25.52 25.52 0.00 4.79
150 151 1.789078 TACTTATCGCTCGGCCGGTC 61.789 60.000 27.83 16.26 0.00 4.79
151 152 1.177256 ATACTTATCGCTCGGCCGGT 61.177 55.000 27.83 15.00 0.00 5.28
152 153 0.456312 GATACTTATCGCTCGGCCGG 60.456 60.000 27.83 17.41 0.00 6.13
153 154 0.522180 AGATACTTATCGCTCGGCCG 59.478 55.000 22.12 22.12 37.76 6.13
154 155 1.466024 CGAGATACTTATCGCTCGGCC 60.466 57.143 0.00 0.00 37.76 6.13
155 156 1.463831 TCGAGATACTTATCGCTCGGC 59.536 52.381 0.00 0.00 38.79 5.54
156 157 2.159680 GGTCGAGATACTTATCGCTCGG 60.160 54.545 0.00 0.00 38.79 4.63
157 158 2.479275 TGGTCGAGATACTTATCGCTCG 59.521 50.000 0.00 0.00 38.79 5.03
158 159 3.664798 CGTGGTCGAGATACTTATCGCTC 60.665 52.174 0.00 0.00 38.79 5.03
159 160 2.223611 CGTGGTCGAGATACTTATCGCT 59.776 50.000 0.00 0.00 38.79 4.93
160 161 2.222678 TCGTGGTCGAGATACTTATCGC 59.777 50.000 0.00 0.00 41.35 4.58
172 173 0.815095 ATACATGTGCTCGTGGTCGA 59.185 50.000 9.11 0.00 44.12 4.20
173 174 0.923403 CATACATGTGCTCGTGGTCG 59.077 55.000 9.11 0.00 35.12 4.79
174 175 1.290203 CCATACATGTGCTCGTGGTC 58.710 55.000 9.11 0.00 35.12 4.02
175 176 0.613260 ACCATACATGTGCTCGTGGT 59.387 50.000 9.11 11.51 35.26 4.16
176 177 1.290203 GACCATACATGTGCTCGTGG 58.710 55.000 9.11 10.90 35.12 4.94
177 178 1.290203 GGACCATACATGTGCTCGTG 58.710 55.000 9.11 6.44 36.71 4.35
178 179 0.901827 TGGACCATACATGTGCTCGT 59.098 50.000 9.11 0.00 0.00 4.18
179 180 1.575244 CTGGACCATACATGTGCTCG 58.425 55.000 9.11 0.00 0.00 5.03
180 181 1.959042 CCTGGACCATACATGTGCTC 58.041 55.000 9.11 0.00 0.00 4.26
181 182 0.107017 GCCTGGACCATACATGTGCT 60.107 55.000 9.11 0.00 0.00 4.40
182 183 1.439353 CGCCTGGACCATACATGTGC 61.439 60.000 9.11 0.00 0.00 4.57
183 184 1.439353 GCGCCTGGACCATACATGTG 61.439 60.000 9.11 0.00 0.00 3.21
184 185 1.153168 GCGCCTGGACCATACATGT 60.153 57.895 2.69 2.69 0.00 3.21
185 186 0.392706 TAGCGCCTGGACCATACATG 59.607 55.000 2.29 0.00 0.00 3.21
186 187 0.681733 CTAGCGCCTGGACCATACAT 59.318 55.000 2.29 0.00 0.00 2.29
187 188 2.028125 GCTAGCGCCTGGACCATACA 62.028 60.000 2.29 0.00 0.00 2.29
188 189 1.301009 GCTAGCGCCTGGACCATAC 60.301 63.158 2.29 0.00 0.00 2.39
189 190 3.138625 GCTAGCGCCTGGACCATA 58.861 61.111 2.29 0.00 0.00 2.74
199 200 1.371881 GAGGACATACGGCTAGCGC 60.372 63.158 9.00 0.00 0.00 5.92
200 201 0.238817 GAGAGGACATACGGCTAGCG 59.761 60.000 9.00 6.83 0.00 4.26
201 202 0.599060 GGAGAGGACATACGGCTAGC 59.401 60.000 6.04 6.04 0.00 3.42
202 203 1.609555 GTGGAGAGGACATACGGCTAG 59.390 57.143 0.00 0.00 0.00 3.42
203 204 1.688772 GTGGAGAGGACATACGGCTA 58.311 55.000 0.00 0.00 0.00 3.93
204 205 1.043673 GGTGGAGAGGACATACGGCT 61.044 60.000 0.00 0.00 0.00 5.52
205 206 1.442148 GGTGGAGAGGACATACGGC 59.558 63.158 0.00 0.00 0.00 5.68
206 207 0.750546 TCGGTGGAGAGGACATACGG 60.751 60.000 0.00 0.00 0.00 4.02
207 208 1.267261 GATCGGTGGAGAGGACATACG 59.733 57.143 0.00 0.00 0.00 3.06
208 209 1.267261 CGATCGGTGGAGAGGACATAC 59.733 57.143 7.38 0.00 0.00 2.39
209 210 1.142262 TCGATCGGTGGAGAGGACATA 59.858 52.381 16.41 0.00 0.00 2.29
210 211 0.106669 TCGATCGGTGGAGAGGACAT 60.107 55.000 16.41 0.00 0.00 3.06
211 212 0.106669 ATCGATCGGTGGAGAGGACA 60.107 55.000 16.41 0.00 0.00 4.02
212 213 0.594110 GATCGATCGGTGGAGAGGAC 59.406 60.000 16.41 0.00 0.00 3.85
213 214 0.474614 AGATCGATCGGTGGAGAGGA 59.525 55.000 19.33 0.00 0.00 3.71
214 215 1.323412 AAGATCGATCGGTGGAGAGG 58.677 55.000 19.33 0.00 0.00 3.69
215 216 3.119291 CAAAAGATCGATCGGTGGAGAG 58.881 50.000 19.33 2.64 0.00 3.20
216 217 2.738643 GCAAAAGATCGATCGGTGGAGA 60.739 50.000 19.33 0.00 0.00 3.71
217 218 1.594862 GCAAAAGATCGATCGGTGGAG 59.405 52.381 19.33 9.87 0.00 3.86
218 219 1.651987 GCAAAAGATCGATCGGTGGA 58.348 50.000 19.33 0.00 0.00 4.02
219 220 0.657840 GGCAAAAGATCGATCGGTGG 59.342 55.000 19.33 10.14 0.00 4.61
220 221 0.301687 CGGCAAAAGATCGATCGGTG 59.698 55.000 19.33 17.87 0.00 4.94
221 222 1.429148 GCGGCAAAAGATCGATCGGT 61.429 55.000 19.33 8.34 0.00 4.69
222 223 1.276844 GCGGCAAAAGATCGATCGG 59.723 57.895 19.33 11.51 0.00 4.18
223 224 0.583438 ATGCGGCAAAAGATCGATCG 59.417 50.000 19.33 9.36 0.00 3.69
224 225 1.869767 AGATGCGGCAAAAGATCGATC 59.130 47.619 17.91 17.91 0.00 3.69
225 226 1.869767 GAGATGCGGCAAAAGATCGAT 59.130 47.619 6.82 0.00 0.00 3.59
226 227 1.290203 GAGATGCGGCAAAAGATCGA 58.710 50.000 6.82 0.00 0.00 3.59
227 228 1.009078 TGAGATGCGGCAAAAGATCG 58.991 50.000 6.82 0.00 0.00 3.69
228 229 2.615447 TGATGAGATGCGGCAAAAGATC 59.385 45.455 6.82 7.54 0.00 2.75
229 230 2.646930 TGATGAGATGCGGCAAAAGAT 58.353 42.857 6.82 0.00 0.00 2.40
230 231 2.112380 TGATGAGATGCGGCAAAAGA 57.888 45.000 6.82 0.00 0.00 2.52
231 232 2.601504 CGATGATGAGATGCGGCAAAAG 60.602 50.000 6.82 0.00 0.00 2.27
232 233 1.331447 CGATGATGAGATGCGGCAAAA 59.669 47.619 6.82 0.00 0.00 2.44
233 234 0.939419 CGATGATGAGATGCGGCAAA 59.061 50.000 6.82 0.00 0.00 3.68
234 235 0.179076 ACGATGATGAGATGCGGCAA 60.179 50.000 6.82 0.00 0.00 4.52
235 236 0.598419 GACGATGATGAGATGCGGCA 60.598 55.000 4.58 4.58 0.00 5.69
236 237 0.598419 TGACGATGATGAGATGCGGC 60.598 55.000 0.00 0.00 0.00 6.53
237 238 1.991264 GATGACGATGATGAGATGCGG 59.009 52.381 0.00 0.00 0.00 5.69
238 239 2.669364 TGATGACGATGATGAGATGCG 58.331 47.619 0.00 0.00 0.00 4.73
252 253 2.535984 GTCGTCCATCGTTGATGATGAC 59.464 50.000 13.42 10.56 46.98 3.06
253 254 2.794631 CGTCGTCCATCGTTGATGATGA 60.795 50.000 13.42 3.52 46.98 2.92
254 255 1.518515 CGTCGTCCATCGTTGATGATG 59.481 52.381 8.32 6.27 42.09 3.07
255 256 1.840181 CGTCGTCCATCGTTGATGAT 58.160 50.000 8.32 0.00 42.09 2.45
262 263 4.430765 GGTGGCGTCGTCCATCGT 62.431 66.667 10.82 0.00 38.57 3.73
276 277 2.590575 AAGTCGTTGCCGTGGGTG 60.591 61.111 0.00 0.00 35.01 4.61
281 282 2.049433 CGAGGAAGTCGTTGCCGT 60.049 61.111 0.00 0.00 44.20 5.68
304 311 4.467084 GAGGATGTCGCGGGGCAA 62.467 66.667 11.93 0.00 0.00 4.52
310 317 0.955178 ACTATGAGGAGGATGTCGCG 59.045 55.000 0.00 0.00 0.00 5.87
325 332 4.227134 CAGGCGGCGCAGGACTAT 62.227 66.667 34.36 6.76 0.00 2.12
403 410 4.828925 GAGGAGGACTGCGCTGCC 62.829 72.222 14.80 15.62 0.00 4.85
412 419 4.516195 GAAGCGGGCGAGGAGGAC 62.516 72.222 0.00 0.00 0.00 3.85
414 421 4.082523 TTGAAGCGGGCGAGGAGG 62.083 66.667 0.00 0.00 0.00 4.30
415 422 2.815647 GTTGAAGCGGGCGAGGAG 60.816 66.667 0.00 0.00 0.00 3.69
416 423 4.388499 GGTTGAAGCGGGCGAGGA 62.388 66.667 0.00 0.00 0.00 3.71
430 437 4.028490 TGGCGGGAAGATGCGGTT 62.028 61.111 0.00 0.00 0.00 4.44
486 493 3.692406 GTGAAGACGCCGGGGACT 61.692 66.667 27.23 21.96 0.00 3.85
510 517 0.813610 TGTCGGTTGTCCTGTGCTTG 60.814 55.000 0.00 0.00 0.00 4.01
513 520 0.814010 ACTTGTCGGTTGTCCTGTGC 60.814 55.000 0.00 0.00 0.00 4.57
522 529 3.729966 GAAGAAAGAGGACTTGTCGGTT 58.270 45.455 0.00 0.00 36.39 4.44
639 646 4.269523 AGCAGGAGGCCGTTGCAA 62.270 61.111 24.43 0.00 46.50 4.08
752 762 2.104963 GGGTCAAAGGCGAGGAAGATAT 59.895 50.000 0.00 0.00 0.00 1.63
829 849 1.987855 CCGCCTCCCTTACAGGTCA 60.988 63.158 0.00 0.00 31.93 4.02
873 893 1.068610 TCAAACAAGCCGCATAACAGC 60.069 47.619 0.00 0.00 0.00 4.40
899 922 3.117888 TCCCTCTTCTTCATATGGTTGGC 60.118 47.826 2.13 0.00 0.00 4.52
936 959 3.849645 GCTCATGTGTTTGTTCAACCTCG 60.850 47.826 0.00 0.00 33.97 4.63
950 973 1.535649 CCTCGACAGCTAGCTCATGTG 60.536 57.143 16.15 6.83 0.00 3.21
962 985 1.667154 TTCGGGCTGATCCTCGACAG 61.667 60.000 0.00 0.00 37.30 3.51
1011 1034 0.682852 CCCACCTGTTAGTCCGTGAA 59.317 55.000 0.00 0.00 0.00 3.18
1035 1058 1.750341 TTCCGGGCACAAACTCTCGA 61.750 55.000 0.00 0.00 0.00 4.04
1055 1078 1.586422 GTGCTGAGAAGTGCAACAGA 58.414 50.000 0.00 0.00 41.43 3.41
1183 5047 8.197592 TCATAGGTAACCTGTGAGTTTCTTAA 57.802 34.615 0.00 0.00 44.70 1.85
1227 5109 1.340405 GGAAGGATGCCTCTTTGCTCA 60.340 52.381 0.00 0.00 30.89 4.26
1291 5173 1.815421 GGAACATGTCGAGCGCCAT 60.815 57.895 2.29 0.00 0.00 4.40
1383 5265 5.682943 TTATTTGGTGACCGAAAAGACTG 57.317 39.130 8.63 0.00 29.81 3.51
1408 5290 9.791820 CATTGATTTTATAACTTGTGATGAGCA 57.208 29.630 0.00 0.00 0.00 4.26
1475 5357 2.375509 CCACTTAGGGGTTCAAAGAGGT 59.624 50.000 0.00 0.00 0.00 3.85
1491 5374 2.621070 TCCTCTTTACTCTGGCCACTT 58.379 47.619 0.00 0.00 0.00 3.16
1503 5386 6.835819 TCTTCATCTTCGTCTTCCTCTTTA 57.164 37.500 0.00 0.00 0.00 1.85
1566 5449 5.464722 CAGGTCAATGAAGTTATCCTCATCG 59.535 44.000 0.00 0.00 0.00 3.84
1639 5522 1.283793 GCATTCCAATGATCCCGCG 59.716 57.895 0.00 0.00 38.70 6.46
1642 5525 1.542915 CGGATGCATTCCAATGATCCC 59.457 52.381 0.00 0.00 45.78 3.85
1752 5635 0.036388 GCCATCCGACTTCCTTGACA 60.036 55.000 0.00 0.00 0.00 3.58
1767 5650 2.666862 TTGACGCCGTTTCGCCAT 60.667 55.556 0.00 0.00 0.00 4.40
1768 5651 3.342627 CTTGACGCCGTTTCGCCA 61.343 61.111 0.00 0.00 0.00 5.69
1783 5666 2.112815 GGTAAGGGAATGCGCGCTT 61.113 57.895 33.29 24.21 42.67 4.68
1845 5728 3.643159 TGCTCGCTACGATACATTCAT 57.357 42.857 0.00 0.00 34.61 2.57
1872 5760 5.181245 TGCAATTTTTCAAAACACGGGAAAA 59.819 32.000 0.00 0.00 38.38 2.29
1878 5766 3.018917 GCGTGCAATTTTTCAAAACACG 58.981 40.909 15.69 15.69 43.10 4.49
1911 5799 3.002144 GCTCGAGTAACCTAACTCTACCG 59.998 52.174 15.13 0.00 43.11 4.02
1967 5857 7.965718 TCCTTGATTTTCATGACAATTTCCTT 58.034 30.769 8.44 0.00 0.00 3.36
1973 5863 5.776716 ACACCTCCTTGATTTTCATGACAAT 59.223 36.000 6.80 6.80 0.00 2.71
1984 5874 4.796606 CCATATCCAACACCTCCTTGATT 58.203 43.478 0.00 0.00 0.00 2.57
2003 5893 3.259374 CCAGGACTTCTCGTATATGCCAT 59.741 47.826 0.00 0.00 0.00 4.40
2074 6294 0.457851 CGCTGGAGTGTCCTCTAAGG 59.542 60.000 0.00 0.00 37.46 2.69
2131 6399 9.672086 CCTCTTAGTCGATTTAGTTCAGATAAG 57.328 37.037 0.00 0.00 0.00 1.73
2217 6517 0.319211 TTGTAGACAGGTTCACGGCG 60.319 55.000 4.80 4.80 0.00 6.46
2301 6603 0.249155 TAAGCGGCGGTGCATACTAC 60.249 55.000 14.17 0.00 37.31 2.73
2307 6613 4.998400 TGCTTAAGCGGCGGTGCA 62.998 61.111 21.97 15.82 45.83 4.57
2318 6624 2.027073 CTGTCAGGCGCGTGCTTAA 61.027 57.895 24.57 5.12 42.25 1.85
2436 6753 3.812053 GCTTTACCAGATGCATACTCCTG 59.188 47.826 0.00 2.28 0.00 3.86
2437 6754 3.713764 AGCTTTACCAGATGCATACTCCT 59.286 43.478 0.00 0.00 0.00 3.69
2442 6759 7.658982 CAGAATCTTAGCTTTACCAGATGCATA 59.341 37.037 0.00 0.00 0.00 3.14
2451 6768 2.288186 GCCGCAGAATCTTAGCTTTACC 59.712 50.000 0.00 0.00 0.00 2.85
2473 6790 2.380410 CGTAGAACAGCGTGCCACC 61.380 63.158 0.00 0.00 0.00 4.61
2480 6797 3.179265 CGGCCACGTAGAACAGCG 61.179 66.667 2.24 0.00 34.81 5.18
2481 6798 3.488090 GCGGCCACGTAGAACAGC 61.488 66.667 2.24 0.00 43.45 4.40
2482 6799 2.813908 GGCGGCCACGTAGAACAG 60.814 66.667 15.62 0.00 43.45 3.16
2483 6800 4.728102 CGGCGGCCACGTAGAACA 62.728 66.667 20.71 0.00 43.45 3.18
2495 6812 3.768185 AATGTCGATCGACCGGCGG 62.768 63.158 37.58 27.06 43.97 6.13
2496 6813 0.593008 TAAATGTCGATCGACCGGCG 60.593 55.000 37.58 6.66 43.97 6.46
2497 6814 1.779569 ATAAATGTCGATCGACCGGC 58.220 50.000 37.58 19.21 43.97 6.13
2498 6815 2.729882 GGAATAAATGTCGATCGACCGG 59.270 50.000 37.58 0.00 43.97 5.28
2499 6816 2.404029 CGGAATAAATGTCGATCGACCG 59.596 50.000 37.58 28.64 43.97 4.79
2500 6817 2.155155 GCGGAATAAATGTCGATCGACC 59.845 50.000 37.58 23.26 43.97 4.79
2501 6818 3.050619 AGCGGAATAAATGTCGATCGAC 58.949 45.455 35.46 35.46 44.77 4.20
2502 6819 3.305964 GAGCGGAATAAATGTCGATCGA 58.694 45.455 15.15 15.15 0.00 3.59
2503 6820 2.408704 GGAGCGGAATAAATGTCGATCG 59.591 50.000 9.36 9.36 38.67 3.69
2504 6821 2.408704 CGGAGCGGAATAAATGTCGATC 59.591 50.000 0.00 0.00 37.32 3.69
2505 6822 2.223971 ACGGAGCGGAATAAATGTCGAT 60.224 45.455 0.00 0.00 0.00 3.59
2506 6823 1.135527 ACGGAGCGGAATAAATGTCGA 59.864 47.619 0.00 0.00 0.00 4.20
2507 6824 1.567504 ACGGAGCGGAATAAATGTCG 58.432 50.000 0.00 0.00 0.00 4.35
2508 6825 2.287103 GGAACGGAGCGGAATAAATGTC 59.713 50.000 0.00 0.00 0.00 3.06
2509 6826 2.285977 GGAACGGAGCGGAATAAATGT 58.714 47.619 0.00 0.00 0.00 2.71
2525 6842 1.447314 GTGGACGGATGGACGGAAC 60.447 63.158 0.00 0.00 38.39 3.62
2526 6843 1.608336 AGTGGACGGATGGACGGAA 60.608 57.895 0.00 0.00 38.39 4.30
2527 6844 2.036731 AGTGGACGGATGGACGGA 59.963 61.111 0.00 0.00 38.39 4.69
2528 6845 1.884075 TTCAGTGGACGGATGGACGG 61.884 60.000 0.00 0.00 38.39 4.79
2529 6846 0.458543 CTTCAGTGGACGGATGGACG 60.459 60.000 0.00 0.00 40.31 4.79
2530 6847 0.895530 TCTTCAGTGGACGGATGGAC 59.104 55.000 0.00 0.00 0.00 4.02
2531 6848 1.550524 CTTCTTCAGTGGACGGATGGA 59.449 52.381 0.00 0.00 0.00 3.41
2532 6849 1.550524 TCTTCTTCAGTGGACGGATGG 59.449 52.381 0.00 0.00 0.00 3.51
2533 6850 3.319137 TTCTTCTTCAGTGGACGGATG 57.681 47.619 0.00 0.00 0.00 3.51
2534 6851 4.351874 TTTTCTTCTTCAGTGGACGGAT 57.648 40.909 0.00 0.00 0.00 4.18
2535 6852 3.830744 TTTTCTTCTTCAGTGGACGGA 57.169 42.857 0.00 0.00 0.00 4.69
2536 6853 3.303132 CGTTTTTCTTCTTCAGTGGACGG 60.303 47.826 0.00 0.00 0.00 4.79
2537 6854 3.844943 GCGTTTTTCTTCTTCAGTGGACG 60.845 47.826 0.00 0.00 0.00 4.79
2538 6855 3.618698 GCGTTTTTCTTCTTCAGTGGAC 58.381 45.455 0.00 0.00 0.00 4.02
2539 6856 2.286833 CGCGTTTTTCTTCTTCAGTGGA 59.713 45.455 0.00 0.00 0.00 4.02
2540 6857 2.639751 CGCGTTTTTCTTCTTCAGTGG 58.360 47.619 0.00 0.00 0.00 4.00
2541 6858 2.036933 GCGCGTTTTTCTTCTTCAGTG 58.963 47.619 8.43 0.00 0.00 3.66
2542 6859 1.332904 CGCGCGTTTTTCTTCTTCAGT 60.333 47.619 24.19 0.00 0.00 3.41
2543 6860 1.309108 CGCGCGTTTTTCTTCTTCAG 58.691 50.000 24.19 0.00 0.00 3.02
2544 6861 0.041663 CCGCGCGTTTTTCTTCTTCA 60.042 50.000 29.95 0.00 0.00 3.02
2545 6862 0.041576 ACCGCGCGTTTTTCTTCTTC 60.042 50.000 29.95 0.00 0.00 2.87
2546 6863 1.193874 CTACCGCGCGTTTTTCTTCTT 59.806 47.619 29.95 1.78 0.00 2.52
2547 6864 0.788391 CTACCGCGCGTTTTTCTTCT 59.212 50.000 29.95 1.47 0.00 2.85
2548 6865 0.179233 CCTACCGCGCGTTTTTCTTC 60.179 55.000 29.95 0.00 0.00 2.87
2549 6866 1.571215 CCCTACCGCGCGTTTTTCTT 61.571 55.000 29.95 5.90 0.00 2.52
2550 6867 2.030958 CCCTACCGCGCGTTTTTCT 61.031 57.895 29.95 5.84 0.00 2.52
2551 6868 1.013524 TACCCTACCGCGCGTTTTTC 61.014 55.000 29.95 0.00 0.00 2.29
2552 6869 1.005156 TACCCTACCGCGCGTTTTT 60.005 52.632 29.95 12.27 0.00 1.94
2553 6870 1.446618 CTACCCTACCGCGCGTTTT 60.447 57.895 29.95 14.98 0.00 2.43
2554 6871 2.182537 CTACCCTACCGCGCGTTT 59.817 61.111 29.95 17.73 0.00 3.60
2555 6872 3.830192 CCTACCCTACCGCGCGTT 61.830 66.667 29.95 18.87 0.00 4.84
2558 6875 4.587189 CAGCCTACCCTACCGCGC 62.587 72.222 0.00 0.00 0.00 6.86
2559 6876 3.145551 ACAGCCTACCCTACCGCG 61.146 66.667 0.00 0.00 0.00 6.46
2560 6877 2.294132 GACACAGCCTACCCTACCGC 62.294 65.000 0.00 0.00 0.00 5.68
2561 6878 0.968901 TGACACAGCCTACCCTACCG 60.969 60.000 0.00 0.00 0.00 4.02
2562 6879 0.824759 CTGACACAGCCTACCCTACC 59.175 60.000 0.00 0.00 0.00 3.18
2563 6880 1.751924 CTCTGACACAGCCTACCCTAC 59.248 57.143 0.00 0.00 0.00 3.18
2564 6881 1.960471 GCTCTGACACAGCCTACCCTA 60.960 57.143 0.00 0.00 0.00 3.53
2565 6882 1.261238 GCTCTGACACAGCCTACCCT 61.261 60.000 0.00 0.00 0.00 4.34
2566 6883 1.219393 GCTCTGACACAGCCTACCC 59.781 63.158 0.00 0.00 0.00 3.69
2567 6884 0.321671 TTGCTCTGACACAGCCTACC 59.678 55.000 0.00 0.00 35.89 3.18
2568 6885 1.674221 CCTTGCTCTGACACAGCCTAC 60.674 57.143 0.00 0.00 35.89 3.18
2569 6886 0.610174 CCTTGCTCTGACACAGCCTA 59.390 55.000 0.00 0.00 35.89 3.93
2570 6887 1.123861 TCCTTGCTCTGACACAGCCT 61.124 55.000 0.00 0.00 35.89 4.58
2571 6888 0.673022 CTCCTTGCTCTGACACAGCC 60.673 60.000 0.00 0.00 35.89 4.85
2572 6889 0.319728 TCTCCTTGCTCTGACACAGC 59.680 55.000 0.00 0.00 37.40 4.40
2573 6890 2.827800 TTCTCCTTGCTCTGACACAG 57.172 50.000 0.00 0.00 0.00 3.66
2574 6891 4.890158 TTATTCTCCTTGCTCTGACACA 57.110 40.909 0.00 0.00 0.00 3.72
2575 6892 5.470098 TGTTTTATTCTCCTTGCTCTGACAC 59.530 40.000 0.00 0.00 0.00 3.67
2576 6893 5.620206 TGTTTTATTCTCCTTGCTCTGACA 58.380 37.500 0.00 0.00 0.00 3.58
2577 6894 6.150140 ACATGTTTTATTCTCCTTGCTCTGAC 59.850 38.462 0.00 0.00 0.00 3.51
2578 6895 6.240894 ACATGTTTTATTCTCCTTGCTCTGA 58.759 36.000 0.00 0.00 0.00 3.27
2579 6896 6.506500 ACATGTTTTATTCTCCTTGCTCTG 57.493 37.500 0.00 0.00 0.00 3.35
2580 6897 7.398024 ACTACATGTTTTATTCTCCTTGCTCT 58.602 34.615 2.30 0.00 0.00 4.09
2585 6902 7.763071 GGACGTACTACATGTTTTATTCTCCTT 59.237 37.037 2.30 0.00 0.00 3.36
2597 6914 2.758979 CCTCCAAGGACGTACTACATGT 59.241 50.000 0.00 2.69 37.67 3.21
2598 6915 2.481449 GCCTCCAAGGACGTACTACATG 60.481 54.545 0.00 0.00 37.67 3.21
2599 6916 1.755380 GCCTCCAAGGACGTACTACAT 59.245 52.381 0.00 0.00 37.67 2.29
2600 6917 1.180029 GCCTCCAAGGACGTACTACA 58.820 55.000 0.00 0.00 37.67 2.74
2601 6918 1.472188 AGCCTCCAAGGACGTACTAC 58.528 55.000 0.00 0.00 37.67 2.73
2602 6919 2.097825 GAAGCCTCCAAGGACGTACTA 58.902 52.381 0.00 0.00 37.67 1.82
2603 6920 0.896226 GAAGCCTCCAAGGACGTACT 59.104 55.000 0.00 0.00 37.67 2.73
2604 6921 0.896226 AGAAGCCTCCAAGGACGTAC 59.104 55.000 0.00 0.00 37.67 3.67
2605 6922 1.549170 GAAGAAGCCTCCAAGGACGTA 59.451 52.381 0.00 0.00 37.67 3.57
2606 6923 0.321996 GAAGAAGCCTCCAAGGACGT 59.678 55.000 0.00 0.00 37.67 4.34
2639 6956 4.089239 TATTCCTGTGGCCGCGCA 62.089 61.111 12.58 2.89 0.00 6.09
2640 6957 3.272334 CTATTCCTGTGGCCGCGC 61.272 66.667 12.58 0.00 0.00 6.86
2641 6958 0.532862 ATTCTATTCCTGTGGCCGCG 60.533 55.000 12.58 0.00 0.00 6.46
2644 6961 4.363991 AGATGATTCTATTCCTGTGGCC 57.636 45.455 0.00 0.00 0.00 5.36
2646 6963 5.936956 GGCTAAGATGATTCTATTCCTGTGG 59.063 44.000 0.00 0.00 0.00 4.17
2669 6986 3.452627 TGCTCTAAAGAAGGCCTAAGAGG 59.547 47.826 21.19 7.73 36.44 3.69
2670 6987 4.744795 TGCTCTAAAGAAGGCCTAAGAG 57.255 45.455 5.16 14.30 37.81 2.85
2671 6988 4.965532 AGATGCTCTAAAGAAGGCCTAAGA 59.034 41.667 5.16 3.56 0.00 2.10
2672 6989 5.289083 AGATGCTCTAAAGAAGGCCTAAG 57.711 43.478 5.16 0.00 0.00 2.18
2673 6990 5.189736 TGAAGATGCTCTAAAGAAGGCCTAA 59.810 40.000 5.16 0.00 0.00 2.69
2674 6991 4.716784 TGAAGATGCTCTAAAGAAGGCCTA 59.283 41.667 5.16 0.00 0.00 3.93
2675 6992 3.521126 TGAAGATGCTCTAAAGAAGGCCT 59.479 43.478 0.00 0.00 0.00 5.19
2676 6993 3.876320 CTGAAGATGCTCTAAAGAAGGCC 59.124 47.826 0.00 0.00 0.00 5.19
2677 6994 4.512484 ACTGAAGATGCTCTAAAGAAGGC 58.488 43.478 0.00 0.00 0.00 4.35
2678 6995 5.936956 ACAACTGAAGATGCTCTAAAGAAGG 59.063 40.000 0.00 0.00 0.00 3.46
2679 6996 7.432350 AACAACTGAAGATGCTCTAAAGAAG 57.568 36.000 0.00 0.00 0.00 2.85
2680 6997 6.146184 CGAACAACTGAAGATGCTCTAAAGAA 59.854 38.462 0.00 0.00 0.00 2.52
2681 6998 5.635280 CGAACAACTGAAGATGCTCTAAAGA 59.365 40.000 0.00 0.00 0.00 2.52
2682 6999 5.163913 CCGAACAACTGAAGATGCTCTAAAG 60.164 44.000 0.00 0.00 0.00 1.85
2683 7000 4.690748 CCGAACAACTGAAGATGCTCTAAA 59.309 41.667 0.00 0.00 0.00 1.85
2684 7001 4.245660 CCGAACAACTGAAGATGCTCTAA 58.754 43.478 0.00 0.00 0.00 2.10
2685 7002 3.849911 CCGAACAACTGAAGATGCTCTA 58.150 45.455 0.00 0.00 0.00 2.43
2686 7003 2.693069 CCGAACAACTGAAGATGCTCT 58.307 47.619 0.00 0.00 0.00 4.09
2687 7004 1.129437 GCCGAACAACTGAAGATGCTC 59.871 52.381 0.00 0.00 0.00 4.26
2688 7005 1.160137 GCCGAACAACTGAAGATGCT 58.840 50.000 0.00 0.00 0.00 3.79
2689 7006 0.179215 CGCCGAACAACTGAAGATGC 60.179 55.000 0.00 0.00 0.00 3.91
2690 7007 1.126846 GACGCCGAACAACTGAAGATG 59.873 52.381 0.00 0.00 0.00 2.90
2691 7008 1.429463 GACGCCGAACAACTGAAGAT 58.571 50.000 0.00 0.00 0.00 2.40
2692 7009 0.599204 GGACGCCGAACAACTGAAGA 60.599 55.000 0.00 0.00 0.00 2.87
2693 7010 1.566018 GGGACGCCGAACAACTGAAG 61.566 60.000 0.00 0.00 0.00 3.02
2694 7011 1.595929 GGGACGCCGAACAACTGAA 60.596 57.895 0.00 0.00 0.00 3.02
2695 7012 2.029964 GGGACGCCGAACAACTGA 59.970 61.111 0.00 0.00 0.00 3.41
2696 7013 2.280524 TGGGACGCCGAACAACTG 60.281 61.111 0.00 0.00 0.00 3.16
2697 7014 2.030562 CTGGGACGCCGAACAACT 59.969 61.111 0.00 0.00 0.00 3.16
2698 7015 2.999739 TTCCTGGGACGCCGAACAAC 63.000 60.000 0.00 0.00 0.00 3.32
2699 7016 2.119484 ATTCCTGGGACGCCGAACAA 62.119 55.000 0.00 0.00 0.00 2.83
2700 7017 2.589157 ATTCCTGGGACGCCGAACA 61.589 57.895 0.00 0.00 0.00 3.18
2701 7018 2.106683 CATTCCTGGGACGCCGAAC 61.107 63.158 0.00 0.00 0.00 3.95
2702 7019 1.832719 TTCATTCCTGGGACGCCGAA 61.833 55.000 0.00 0.00 0.00 4.30
2703 7020 1.832719 TTTCATTCCTGGGACGCCGA 61.833 55.000 0.00 0.00 0.00 5.54
2704 7021 0.748005 ATTTCATTCCTGGGACGCCG 60.748 55.000 0.00 0.00 0.00 6.46
2705 7022 2.222027 CTATTTCATTCCTGGGACGCC 58.778 52.381 0.00 0.00 0.00 5.68
2706 7023 1.604278 GCTATTTCATTCCTGGGACGC 59.396 52.381 0.00 0.00 0.00 5.19
2707 7024 2.917933 TGCTATTTCATTCCTGGGACG 58.082 47.619 0.00 0.00 0.00 4.79
2708 7025 4.723309 AGATGCTATTTCATTCCTGGGAC 58.277 43.478 0.00 0.00 0.00 4.46
2709 7026 5.133322 AGAAGATGCTATTTCATTCCTGGGA 59.867 40.000 0.00 0.00 0.00 4.37
2710 7027 5.241064 CAGAAGATGCTATTTCATTCCTGGG 59.759 44.000 0.00 0.00 0.00 4.45
2711 7028 6.060136 TCAGAAGATGCTATTTCATTCCTGG 58.940 40.000 0.00 0.00 0.00 4.45
2712 7029 6.205076 CCTCAGAAGATGCTATTTCATTCCTG 59.795 42.308 0.00 0.00 0.00 3.86
2713 7030 6.297582 CCTCAGAAGATGCTATTTCATTCCT 58.702 40.000 0.00 0.00 0.00 3.36
2714 7031 5.048852 GCCTCAGAAGATGCTATTTCATTCC 60.049 44.000 0.00 0.00 33.26 3.01
2715 7032 5.048852 GGCCTCAGAAGATGCTATTTCATTC 60.049 44.000 0.00 0.00 35.92 2.67
2716 7033 4.826183 GGCCTCAGAAGATGCTATTTCATT 59.174 41.667 0.00 0.00 35.92 2.57
2717 7034 4.141321 TGGCCTCAGAAGATGCTATTTCAT 60.141 41.667 3.32 0.00 35.92 2.57
2718 7035 3.200605 TGGCCTCAGAAGATGCTATTTCA 59.799 43.478 3.32 0.00 35.92 2.69
2719 7036 3.813443 TGGCCTCAGAAGATGCTATTTC 58.187 45.455 3.32 0.00 35.92 2.17
2720 7037 3.818180 CTGGCCTCAGAAGATGCTATTT 58.182 45.455 3.32 0.00 43.49 1.40
2721 7038 2.486907 GCTGGCCTCAGAAGATGCTATT 60.487 50.000 3.32 0.00 43.49 1.73
2722 7039 1.072015 GCTGGCCTCAGAAGATGCTAT 59.928 52.381 3.32 0.00 43.49 2.97
2723 7040 0.467384 GCTGGCCTCAGAAGATGCTA 59.533 55.000 3.32 0.00 43.49 3.49
2724 7041 1.224039 GCTGGCCTCAGAAGATGCT 59.776 57.895 3.32 0.00 43.49 3.79
2725 7042 1.823041 GGCTGGCCTCAGAAGATGC 60.823 63.158 3.32 0.00 43.49 3.91
2726 7043 1.523258 CGGCTGGCCTCAGAAGATG 60.523 63.158 3.32 0.00 43.49 2.90
2727 7044 2.739996 CCGGCTGGCCTCAGAAGAT 61.740 63.158 3.32 0.00 43.49 2.40
2728 7045 3.393970 CCGGCTGGCCTCAGAAGA 61.394 66.667 3.32 0.00 43.49 2.87
2741 7058 3.137637 ATGCCAAAATAGCGCCGGC 62.138 57.895 19.07 19.07 43.28 6.13
2742 7059 1.299316 CATGCCAAAATAGCGCCGG 60.299 57.895 2.29 0.00 0.00 6.13
2743 7060 1.299316 CCATGCCAAAATAGCGCCG 60.299 57.895 2.29 0.00 0.00 6.46
2744 7061 1.067916 CCCATGCCAAAATAGCGCC 59.932 57.895 2.29 0.00 0.00 6.53
2745 7062 1.067916 CCCCATGCCAAAATAGCGC 59.932 57.895 0.00 0.00 0.00 5.92
2746 7063 1.741525 CCCCCATGCCAAAATAGCG 59.258 57.895 0.00 0.00 0.00 4.26
2747 7064 1.447217 GCCCCCATGCCAAAATAGC 59.553 57.895 0.00 0.00 0.00 2.97
2748 7065 1.741525 CGCCCCCATGCCAAAATAG 59.258 57.895 0.00 0.00 0.00 1.73
2749 7066 1.760086 CCGCCCCCATGCCAAAATA 60.760 57.895 0.00 0.00 0.00 1.40
2750 7067 3.082701 CCGCCCCCATGCCAAAAT 61.083 61.111 0.00 0.00 0.00 1.82
2751 7068 4.629958 ACCGCCCCCATGCCAAAA 62.630 61.111 0.00 0.00 0.00 2.44
2762 7079 4.011517 TTGAGAACCCGACCGCCC 62.012 66.667 0.00 0.00 0.00 6.13
2763 7080 2.741211 GTTGAGAACCCGACCGCC 60.741 66.667 0.00 0.00 0.00 6.13
2764 7081 2.741211 GGTTGAGAACCCGACCGC 60.741 66.667 0.00 0.00 46.12 5.68
2772 7089 0.602905 CTGGGACGGTGGTTGAGAAC 60.603 60.000 0.00 0.00 0.00 3.01
2773 7090 1.752198 CTGGGACGGTGGTTGAGAA 59.248 57.895 0.00 0.00 0.00 2.87
2774 7091 2.214216 CCTGGGACGGTGGTTGAGA 61.214 63.158 0.00 0.00 0.00 3.27
2775 7092 2.347490 CCTGGGACGGTGGTTGAG 59.653 66.667 0.00 0.00 0.00 3.02
2776 7093 2.446994 ACCTGGGACGGTGGTTGA 60.447 61.111 0.00 0.00 34.32 3.18
2777 7094 2.032071 GACCTGGGACGGTGGTTG 59.968 66.667 0.00 0.00 35.59 3.77
2778 7095 2.446994 TGACCTGGGACGGTGGTT 60.447 61.111 0.00 0.00 35.59 3.67
2779 7096 2.923035 CTGACCTGGGACGGTGGT 60.923 66.667 0.00 0.00 35.59 4.16
2780 7097 4.394712 GCTGACCTGGGACGGTGG 62.395 72.222 0.00 0.00 35.59 4.61
2781 7098 4.394712 GGCTGACCTGGGACGGTG 62.395 72.222 0.00 0.00 35.59 4.94
2791 7108 1.395826 ATGGCGTCTAGAGGCTGACC 61.396 60.000 30.36 17.70 41.51 4.02
2792 7109 0.461961 AATGGCGTCTAGAGGCTGAC 59.538 55.000 30.36 18.00 41.51 3.51
2793 7110 1.195115 AAATGGCGTCTAGAGGCTGA 58.805 50.000 30.36 20.26 41.51 4.26
2794 7111 2.029838 AAAATGGCGTCTAGAGGCTG 57.970 50.000 30.36 7.05 41.51 4.85
2795 7112 2.789409 AAAAATGGCGTCTAGAGGCT 57.211 45.000 30.36 14.10 41.51 4.58
2818 7135 9.877178 TTTTGTCTAATTTTAGCCAAACTTCAA 57.123 25.926 6.15 0.00 38.05 2.69
2819 7136 9.877178 TTTTTGTCTAATTTTAGCCAAACTTCA 57.123 25.926 6.15 0.00 38.05 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.