>input_sequence_67187
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--------------------------------------------------------------ATGGTGTTCTCTTCACGG
ACTAACAGGTGGGAGAGTCGAGAGTTTGTGCCCGGAATCTGTTGCACTTCTCAGCACCTCTACGACATGTTGCCAGTA--
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-------------------------------------------------------------------------------T
ATGAAAACTACAACCAAATATGGAAGTCAGCTATGTATTGGCGAGGGTCTCTCTATGTGCATTGCGGTAACCATATTCTT
ATGATCTTAAGAAACTCACAGGTTACCTATGAT------------------ATACCCTGTGACGAGGATGAGCAAAGAGG
CATCCTTCCTACTAGGTCGGTCTTAGCGAGTTATGAGAAAGGGATCCACTACATGGCGCTCGACATGTTCCAACTCCAGG
TGTGGAAACTGACAGAACTTGTTGACGGGCGGTTAGGGTGGACACGTACACACGAGGCCAACCTCAGTCTTTTCGGTCAC
CAAATAAAGTGCTCATCACAAGTTATAAAATCAATGGCGCGATGGGAGTTGGTCGAAAGCAATGAAGCAAAAGTCAACCT
CTTTGAACCCC-TAAGTGGCCAGAGTAAAGAGGAAGACGAAGATGAAGAAGAGAAAACCAAAAGTGGGTCCGGCTACATG
TGGGACTCCGATGAGGATAACTTCATTGACCTGGACGAAGGTGTCGCCGACCGACCCGAGCCGTTGGAGTACCGGTGGTA
CCGCGGGATCATTGGAATGCATCCGTACAAGGACGTGCTCCTCCTCCACATGAACGGCAGGGCGATGGCATACCATCTCA
GCACCTCGAGGATGCAACACCTGGGCAAGGGGCTTGTCAAGGAAGTCGGATGGCGAAACGGCGTCAAGCGCGCATTCCCT
TACCGCCCGTGCTACGTGGACGCGCTTCCGTTGGGGAAGATGTCGCAATGA-----------------------------
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>chr4A_1_TraesCS4A01G304800
CCAAGTTGGTCAGAGCTGTAGGTACGACGCACGTACATGCATTTGTCGATCAGAATCAACTTGCAGGGAAGGTGCACTGC
AGGCACGTAGGTGCCACGAAATCGACTTGGGCACGTACATGAACCCTACTCGGTCACGCCTCACGGCCTCGACCGGCCGA
GCGATAAGTATCTCGACCACGAGCACATGTATGGTCCAGGCGCTAGCCGTATGTCCTCTCCACCGATCGATCTTTTGCCG
CATCTCATCATCGTCATCATCAACGATGGACGACGCCACCCACGG------CAACGACTTCCTCGCCGGCTTGCCCCGCG
ACATCCTCCTCATAGTCCTGCGCCGCCTGCCGAACCGCGCGGTCGCCGAGTCCCGGCGCGTATGCCACACGTGGCGCGCC
ACCATCGACGGCAGCGCAGTCCTCCTCGCCCGCTTCAACCGCATCTTCCCGCCACGCGCCTTCCCCGGCATCTTCACCAG
CAACTACGTGGCAGTCCCCGGCGTCTTCACCGGCGGCAAGCACAGGACAACCGACAAGTCCTCTTTCTTCGCCCGCGCGG
GAAAGCCGCCACGTACCCCCGCCGCCGACGGGCCTGTGTTCCGGCGTCCTCCCTTCAAGCACGACTGGGCCTCCGTGCTG
GACCATTGCAACGGCCTCCTGCTCCTCCGCCAGGACAGCCCCCGCCTCTACTACGTGTGCAACCCGGCGACAGTGCGGTG
CGCCCGCTTGCCTGCCCTGCCCACTTC---GTATTTCTGGAATATCTTCCTCGCCTTTGACCCGG----------CCGTG
TCACGGCACCACGAGGTGTTCCTATTCCCACGGACGATGACACAACTGTGACCTGTAAGGGAGGCGGTCCGATCCCGCGT
CAAAGCACAAGAGCTGTTATGCGGC---TTGTTTGAAGAAGGCCAACCATATGAAGAAGAGGGAAAAGAAGAACAAGGCG
AGGTTGAACAAACACATGAGCTAGCTGTCGAGGATCAGCCCGAAGATGAGGTGTTGTCTTTAATGGTGTTCTCTTCACGG
ACTAACAGGTGGGAGAGTCGAGAGTTTGTGCCCGGAATCTGTTGCACTTCTCAGCACCTCTACGACATGTTGCCAGTA--
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-------------------------------------------------------------------------------T
ATGAAAACTACAACCAAATATGGAAGTCAGCTATGTATTGGCGAGGGTCTCTCTATGTGCATTGCGGTAACCATATTCTT
ATGATCTTAAGAAACTCACAGGTTACCTATGAT------------------ATACCCTGTGACGAGGATGAGCAAAGAGG
CATCCTTCCTACTAGGTCGGTCTTAGCGAGTTATGAGAAAGGGATCCACTACATGGCGCTCGACATGTTCCAACTCCAGG
TGTGGAAACTGACAGAACTTGTTGACGGGCGGTTAGGGTGGACACGTACACACGAGGCCAACCTCAGTCTTTTCGGTCAC
CAAATAAAGTGCTCATCACAAGTTATAAAATCAATGGCGCGATGGGAGTTGGTCGAAAGCAATGAAGCAAAAGTCAACCT
CTTTGAACCCC-TAAGTGGCCAGAGTAAAGAGGAAGACGAAGATGAAGAAGAGAAAACCAAAAGTGGGTCCGGCTACATG
TGGGACTCCGATGAGGATAACTTCATTGACCTGGACGAAGGTGTCGCCGACCGACCCGAGCCGTTGGAGTACCGGTGGTA
CCGCGGGATCATTGGAATGCATCCGTACAAGGACGTGCTCCTCCTCCACATGAACGGCAGGGCGATGGCATACCATCTCA
GCACCTCGAGGATGCAACACCTGGGCAAGGGGCTTGTCAAGGAAGTCGGATGGCGAAACGGCGTCAAGCGCGCATTCCCT
TACCGCCCGTGCTACGTGGACGCGCTTCCGTTGGGGAAGATGTCGCAATGAATGTATCGTA-----GCGAGCATGGTTGT
TTTCCCGTGTTTTGAAAAATTGCACGCTTTGCCGACTTCGG--TAGAGTTAGGTTACTCGAGCATCTTGCTCAAAGAACA
AGATTGTAAAAGAATGAAGGAAATTGTCATGAAAATCAAGGAGGTGTTGGATATGGCATATACGAGAAGTCCTGGATGGA
ACTCTG--GTGTCACGGGTCAATAGATTG---------------------------------------------------
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-------------------------------------TAAAATGTTTGTGTGGCC-------------------------
---------------TTAGAGGACACTCCAGCGTGGTATACTTCCGTCTTATGG---TTTTTC-----TTGTTTGTTTCT
TATCTGAACT--------------------------------AAATCGACTAAGAGGCTCGTTGTTTATCTCCTATCCTT
TTGTCTGAACCAAGACACGTCAGTACAGTAACACCACGCCGTGAACCTGTCTACAAGTCCCTGCATGTTACCTGA--ACT
GCTTAACTTTGGAAGCACGCGTACGTGTACCCACATTGCTACG----TAGTATGCACCGCCGCTTAAGCACGCGC---CT
GACAGTGGTACTGACTAAACTGAACTAAACTAAGATAGATC-AGTGATAATAGCAGCTTTATTAGGTGGGTTTGTGGGTG
ACTGGGACGAGCAGACGGTG-------CATACCAGGAGTATGCATCTGGTAAAGCTAAGATTCTGCGGCGGTGGCACGCT
GTTCTACGTGGCCGCCGGTCGATCGACATTTATTCCGCTCCGTTCCGTCCATCCGTCCACTGAAGAAGAAAAACGCGCGG
TAGGGTAGGCTGTGTCAGAGCAAGGAGAATAAAACATGTAGTACGTCCTTGGAGGCTTCTTCTGACTTGCTAGTTTGCGC
GGCCACAGGAATAGAATCATCTTAGCCTCTTAGGCCTTCTTTAGAGCATCTTCAGTTGTTCGGCGTCCCAGGAATGAAAT
AGCATCTTCTGAGGCCAGCCGGCGCTATTTTGGCATGGGGGCGGTCGGGTTCTCAACCACCGTCCCAGGTCAGCCTCTAG
ACGCCATTTTTTAATTGAAGTTTGGCTAAAATTAGACAAAAAAGA
>chr4B_240
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-------------------------------------------------------------------------------G
CATCTGATCATCCG--TCATCACCGATGGACGACGCGACCCCCGGCAACGGCAACGACTTCCTCGCTGGCCTGCCCTGCG
ACATCCTCCTCGAACTGCTGCACGGTTTGCCAAACCGCGCACTGGCCGAGTCCCGGTGCATCTGTCGCGCGTGGCGCACC
GTTATCGTT------------------GCCCGCTTCCACCGCATCTTTCCACAACGCGCCTTCCCCGGTATCTTCACCAG
CAATTGCGTGGCCGTTCCTGACGTCTTCACCGGAGGAACACACATGATCACCGACAAGTCCTCTTTCTTCGCCCGCACGG
GAAAGCCACCGCATACCGCCACCAATGTCGAGCCTTTGTTCCGCCGTCCTCACTTCAAGCACGACTGGGCCTCCATGCTG
GACCACTGCAACGGCCTCCTGCTCCTCCATCGGGCCAGCCGCAACCTCTACTGTGTGTGCAACCCGGCGACAGTGCGGTG
CGCCCGCTTGCCTGCCCAGCTACCGACGCGGTATCTCAGGGGTATCTTCCTCGTCTTTGACCCGG----------TCGTG
TCACTTCACCACGAGGTGTTCCGGTTCCCGCACACAATGACACAACTACGACCTAAG-----------------------
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-------------------GAGAGTTTGTACCCGGAAGTTGTTGCACTTCTCAACACCTCTACGACATGTTGCCAGTA--
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-------------------------------------------------------------------------------T
ATGAAAACTATTACCAAATATGGAAGTCAGCTGTGTATTGGCGAGGGTCTCTCTATGTGCATTGCGGCAACAATATTCTT
ATAATTCTAAGAAACTCACAAACGACCTATGATATGGTCGAGCTGCCGGGAATACCATGTGACGAGGAAGAACATGGAGG
CATCCTTCCTACTAGGTCGATCTTGCCGAGCTATGAGAAAGGGATCCACTACGTGGGACTCGACATGTTCCAACTTCAGG
TGTGGACACTGACAAAACCTGCTGATGGGCAGTTAGGGTGGACGCTGACACACGAGGCCAACCTTAGTCCTTTGGTTCAC
CAAATAAAGCACTCATCACAACTTATAAGACCAATGGCGCTTTGGGAGGTGGTCGAAAGCAGTGAAGCAAAAGTTAGCCT
CTTTGAACCCC-TCACTGGCCAAAGCAAAGAGGAAGAGGAAGATGAAGAAGAGCAAGCCAAAAGTGGGTATGGGTACTTG
TGGGACTTGGACGAGGATAACTTCATCGACCTGGACGAAGGTGCCGCCGACCGACTCGAGCCACTGGACTACTGGTGGTA
CTGCAGGATAATTGGAATGCATGCGCACAAGGACGCACTCCTCC---ACATGAACGGCAGAGTCATGGGGTACCATCTTA
GCAACTCGAGGATGCAACACCTGGGCAAGGGGCTCGTCAAGGAAGTCGGTCGGCGAAGCGGCGTTGAGCGTGCATTCCCT
TACCGCCCATGCTATGCGGACGCCCTGTCATTGGGGAAGATGTCATGGTGAATGTATCGTA-----TAGAGCATCATTGA
TTTCCTGCGTTTTAAAATATTGCATGCCTTGTGGAATTTGATGGAGAGTTAGGTTACTCGAGCATCTTGCCGAAAGAACA
AG-TTGTAAAAGAATTGAGGAAGTTATCATAAAGATCAAGGAGGTGATGGATGTGGCATACACGGGAAGTCAAGGATGGC
ACTCTATGGTGTCGCGGGTCAAT---------------------------------------------------------
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>chr4D_449
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------------------------------------------------------CGCGCCTTCCCCGGCATCTTCACCAG
CAATTGCACGGCCGTCCCCGGCGACTTCAGTCGCAAAAAACACAGGACCACCGACAAATCCTCCTTCTTCGCCCGCGCGG
GAAAGTTGCCACGTACCCTCGCCGATGACGGGCCTGTGTTTGAGCGTCCTCCCTTCAAGCATGACTGGGCCTCTG-----
------TGCAACGGCCTCCTGCTCCTCTGCCAGGACAGCCCCCGCCTCTACTACGTGTGCAACCCGGTGACAGTGCGGTG
CGCCCGCTTGCCTGCCCTGCCCACTTT---GTATTTCTGGACTATCTTCCTCGCCTTTGACCCGG----------C----
-------ACCACGAGGTGTTCCTATTCCCACGAACGATGACACAACTACGACCTATAAAGGAGGCGGTCCGATCCCGCGT
CAAAGCACAAGAACTGTTATGCGGC---TTGTTTGAAGAAGACCAGCCATATGAAGAAGAGGGAAAAGAAGAACAAGGTG
AGGTTGAGAAAATACATGAGCTAGTTGTCGAGGATCAGCCCGAAGATGAGGTGTTGTCTTTAATGGTGTTCTCGTCACGG
ACTAACAGGTGGGAGAGCAGAGAGTTTGTGCCCGGAAGCTGTTGCACTTCTCAGCACCTCTACGACATGTTGCCAGCA--
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-------------------------------------------------------------------------------T
ATGAAAACTACAACCAAATATGGAAGTCGGCTGTGTATTGGCGAGGGTCTCTCTATGTGCATTGCGGCAATAACATTCTT
ATGATCCTAAGAAACTCACGGGTAACCTATGATATGGTCCAGCTGCCGGGAATACCCTGTGACGAGGAAGAGCATAGAGG
CATCCTTCCATCTAGGTCGGTCTTAGCAAGCTATGAGAAAGGGATCCACTACGTGGCGCTCGACATGTTCCAACTCCAGA
TGTGGAAACTGACAGAATTTGTTGATGGGCAGTTAGGGTGGACGCTGACACATGAGACCAACCTTAGTCCTTTCAGTCAT
CAAATAAAACTCTCGTCACAAGTTATAAAACCGATGGCGCAATGGGAGTTGGTCGAAAGCAGTGAAGCAAAAGTTAGCCT
CTTTGAACCCC-TCAGTGGCCAGAGCAAAGAGGAAGAT---GATGAAGAAGAGCAAGCCAAAAGTGGGCCCGGGTACTTG
TGGGACTCGGACGA-GATAACTTCATCGACCTGGACGAAGGTGCCGCTAACCGACTCGAGCCGCTGGACTACTGGTGGTA
CTGCAGGATCATCGGAATGCATCCGCACAAGGACGTGCTTCTCCTCCACATGAACGGTAGGGCGATGGCATACCATCTCA
GCACCTTGAGGATGCAACATTTGGGCAAGGGGCTCGTCAAGGAAGTTGGCCGGCGGAACGGCGTCGAGCGTGCATTCCCT
TACCGCCCGTGCTACATGGACGCGCTCCCCGTGGGGAAGATGTCGGAGTGAATATATA-TATCGTAGCGAGCATGGTTGC
TTTCCGGTGTTATAAAAAATTGCACGCTTTGCCGACTTTGG--TAGAGTTAGGTTACTCGAGCATCTTGCTGAAAGAACA
AGATTGTAAAAGAATTGAGGAAGTTGTCATGAAGATCAAGGAGGTGTTGGATGTGGCATATACTGGAAGCCATGGATGGA
ACTCTATGGCGTCACGGGTCAATGGGTGAAGAAGTGAA-AGCGCGCTTGCGATCCCAAGCCCAC----------------
---------------------TGATTGAAAATTTCAAACAATTCTGATATTTTTTTTGGCAACAAACATTGATGAATATT
TTAACTGTGTGTAAATTTTCGTGATGGAATGACACTTATGGAGGTCTGGGTAAAAAATGATTCAAAAAAAATGTCTTTTT
GAAACATTGATTTTGTTTTTTGTCCAGACTTGCACGAATGTCATTCCATCACGAGATATTACACGTAGATGAAGCATTCA
CCCATGTTTATCACAAAAAATCAGAGTACTGCAATGTTACAACGTTTGTGTGGTC-------------------------
---------------TTAGAGGACACTCCAGCGTGGTATACTTCCGTCTTATGG---TTTTTTTGTTGTTGTTAGTTTGT
TATATCTGAACTTTGTATGTTTGGCGAGTTTTTTTTCTATGAAAATCGACTAAGAGGCTCGTTGTTTATCTCCTATCCTT
TTGTCTAAAACAAGACACGTCAGTACAGCAACACCATGCGGTGAACCTGTCTACAAGTTCATGCATGATACCTGTGTACT
GCTTAACTTTGGAAGCACG--TACGTGTACTGACATTGCTACTTTGCTAGTACGCACCGCCGCATAAGCACGCGGTGTCT
GACAGTGGCACTGACTAAACTGAACTAAACTAAGATAGATC-AGTGATAATAGCAGCTTTATTAGGTGGGTACGCGGGTG
ACTGGGATGAGCAGATGATG-------CATACGCGGAGCATGCATCT---------------------------------
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>chr4A_613
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----------------------------------------------------------GCATGACTAGGCCTCCGTGCTG
GACCACTGCAACGGCCTCCTGCTCCTCCGTCAGGACAGCTCCCACCTCTACTACGTGTGCAACCCGGCGACAGTGCGGTG
CGCCCGCTTGCCTGCCCTGCCCACTTT---GTATTTCTGGAGTATCTTCCTCGCCTTTGACCTAGCCGTTCACGCC----
-------ACCATGAGGTGTTCCTGTTCCTGCGGACCATGACACAGCTGCGACCTGTAAGGGAGGCGGTCCGATCCGGCGT
CAAAGCACAAGAACTGTTATGCGGC---TTGTTTGAAGAAGACCAACCATATGAAGAAGAGGGAAAAGAAGAACAAGGTG
AGGTTGAACAAATACATGAGCTAGTTGTCGAGGATCAGCCCGAAGATGAAGTGTTGTCTTTAATGGTGTTCTCATCACGG
ACTAACACGTGGGAGAGCCGAGAGTTTGTGCCCGGAAGTTGTTGCACTTCTCAGCACCTCTACGACATGTTGCCAGTATC
TTTACCTACTAATAAACTAGCTATTGCTTCTGGTCGTCTGTTGTGGTTGTTTTGCAAAAAGCTCCCTCAATTTACAGGAA
ATCAACCCGCAGTCCCTGTTTTAGTGGCACCCAGAGAAAACGTTTCACTTTTACAAAAAAAACCTATAGACATTTCAATT
CAGTCCGCAGTCCTTTCCTTCCTTTTATCCACTCTGCGCCGGCGGCTACGCCCATTCCGTCGTGCGCCGGCGGCCGCCGT
GCCTCGCGCGGGAGGATGGAGTGCGCTCGTCGGGAGGATGGACGGCGCGGAGAGGCGCGCTCGCGCCCGAGCTCCTGTGC
CCGCGCCTCGTGCCTCCTTGCACCGCTCCGGCGGCCACTCGCCACACGCTGTCGCCGGCGACCATAAACAGCGACCGTCG
CACCTCTACGCGCGCTACCCCGAGGCCCCAGCCACGCCAAGCCGCCGTCTTCCGCAACCCCGGCCTCCTCCTCGACCTCG
CCTCTCCGTGCGAACAAACGGCATTGCCGGCGGCGGCCACGGCCACCGTGCTTGAGCTGACGGGCGCCGACCGCACGGGG
ATCATCTCCGAGGTGTTCGCCGTGCTGGCCTACATGATCTGCAGCGTCGTCGATGCCAGGGCGTGGTCGCATCGCGGCCG
CCTCGCCTGCCTCGTCTACCTGCGGGACGAGGATGTGGCCGCCGCCGGTGTGGAGCGCATCGAGGCCCGCCTCGCCCCCC
TCCTCCGCGGAGACTCTGAAGCCAGCGGCGGCGCCGTGGCTGCCGTCCCCGCCGGCTCCATCCCGCACGCTGACCGACGT
CTCCACCAGCTCATGTATGCCAGCGGCGACTAGGAGCGCGCATTGCCAGCTCCCTCGGTGTCTGTCGAGAGCTGGGCCGA
GCGCGGGTACTCGGTGTTCAACATCCATTCCACAATCATCTCTTGTACAGTGGCTGAGGAAGATCCAGGAAAGCAAGAGC
TGCGCAAGAGGGGGCAGGATCAGGAAGAAGCACGGTGATGGAACCTTAGCAGTAGACCAGATGCAGACATGTACATAAGG
GGATCCGATTACGATTAGATGATGCAGACCGTGTCCTTGTCCAACAAAACTCAATCGAGTGTTTGACCCGGATTGTTCTT
TTTTGCTATAAGAAGGAAGAGTACTACGCTGGAATCTCCATCACGTTAATTGTCGACGAAACATCCAATGTTTCCGCCGA
GTTCGCAGCAGGAAGGAGCTCAGAGTTCGCCAATGTCTCCTGTGGTGTCTACACTCTACACCAGAGGTATGCTTCCCCTT
GAACCATGTTAACACGTTATGAGGATCCATGGCCTCTTCTTCTATTTCTTCAGTGCTACCGTCTTGCTCGTCAGAGGAAA
CTGGTGCAGTTTCTGCTGCATCTTCCTGACACTGGTCCTCAACCATCTTGTTTTGCTCTTCGTTCTGAAGATCCATGGCC
TCCTTTTCCAATTGTTGAGTGGGTACAGCAGTTTCCATATCATCACCTAATTGGTTGCAAACAAAATTCTCATCAGTTTC
AGATACGACAGTCAAGAGCGTCACAGGAGGAAGAAGCTCCGAGTTCGCCTGAGGTACACAAACATCCGTCCAGCACTCCA
ATGTTACCTACGGCGTCTACACCAGAGGTATATCTGACAATCCATACATTGCGTTAATTTTCAGACCCTCTAGGTGATGC
TTTTTCATGTCTAGAATTGGCCCTCGAGGTGATGCTTTTTCATGTGTAGAATTCAGCATGTTAGGCAAGAGTGTTAATCA
ATCTACTATAATATCAGACATGAGAGACCAGTCCAATTTTTCTTCACTACCTCGGAATAAGGAGCTCAAGTCTGTAGTAG
CAGGACTCATAAGAAAATGCATTGTCAGATGTATGTAGTAGAATCTGAATCTGTTAATCTGTTGAAAGATAAGGAATCTA
CTTGAAAGATAATGACAAGAGAGACCAGTCCAATTTTTCTTGTAAAGTGCATGCTGTTTAAACTTTTAAATGTTCATGTA
TACCTCTGTTTCTTTCTCATTGAGTTTTGGTACATTTGGTATTGTTCGATATGCTATCTAATATAGAGTGTGTGGCCCCA
CTTCAGTTGTTCAATTATTTTTCACTTAGCAGCGGGTGATTGATGGACCAATTATGCCAGCAATGTCCTTAATTTCAGAG
AAGATGCAAAACAGATAACATGGATGAGCTTGAATAAATGCCGATAGTGTAGCTTTCTGCTGGACCATATATTCTGCCCG
GAGAAGTTTCAGTGACCAATGGAAGCTTTGGTATATTTTTTTCAAGCAAAAGTAATCGTCTATTACCCATGTCAGGTTTC
GACTCAAATTGTGGTGCTTCTGTTGGCATTCCTTATCTTTTATGCCTGATGTGAGTCTTAGTGCTAATAAGAACTATTTT
TTCCAAATGGTAAATCTACCTTTTCCCCATCATGTGACTTAAAGCTAATCTATTCATGGTTAGTTTTCCTTCCTGTATAA
AGGTCATCTGTTCCGGTACAGTTTTTCTTCGCTTTCTTTTACTGTAACATAGACCATGCTCACATGGTCGCAAATTGTAA
ACAGAGATGGAAACGTGCATACAGATCTCTCAAGCATGCAATATTTTTCCAGGGTGACAATTTTTTACATGGCTTTATAT
CTGAAGACACCTTTTGGTTGACTCTATTTGTTGTATATAAGTTCTATCCAAATGTACCTTTGGATGCTTATACCATAACT
GATGGCCCTGGATAAGTTATATCTGAAGATACCTTTGGTGACCCCTTTCTATGTTCATTGGTGAATAATAGCGGAAAAAA
AACTCGAATGAAACACTGAGACGACATAGAGGAACACTACTTGGGGCAGTACAATGTTATAGAGGTCGCTTTGTTGAGAG
GTGAGCAAATACATGAAGCCAACAGAGCAACTGGGTGGGTGGATCATGACTAGCTCTGATTTTCTGTACGATTATTTGTC
CTGCTCTTGCAATTCTCACACTCTATGTGAGAGAAGATCCCACAAGAATTATCATTGTTTGTGTTTAAGAGGGCCGTAAG
GTTTATCCATATCATAGTGAGGCGTTGAGTTACGTATTTACTATAGACTAGATGACTGAATCTCAGTCAAGTTTTTCAAA
CATGCAAATTATATCACAGTTAATTCTTCATTCTTCAGCAAGGCAGCACAACGGGACTACATGGAGCAACAACACCCGAA
TTTGTTTATGCATTTGCTTTAGCCAAGATATCTCAATCCCGGGCGACTTTTCAAACATGCAAATTATGTTACGGTTCATG
TTGCGACGCATGGGCAATTAAATGAAGAGGGGCAATTATTCGTTTACAAGGGATAATGAGATGGGGAACGGAAAGAGAGA
CAATGAGTGCAGTTCATCTCGCAACGAGAGTGTCTCCTTTTTCTGAGAGCGTGCGTGTTTGAATAGGCAAGTCCTTATGT
TTGCTCCAAGCCCAAATAGTGCAAAAAACAATTATAAATATAATATAATTTTCAAAAAGACAAAACATTTTGTAAAAAAA
TCTGTTAAAAAAATTCCTTTTTAGAGAAATGTTCCAATTTACTAAAAATGTTAAATAATCTTAAAAAAGTGTTCCGGTCT
TTATGTAAACGTTAACTTTTATCAAAGATAAGAATTTTTCCATGTTTAACCTTATCATCGACATTTATTAAAATTGGGTA
TAAGAAAATGATGCACAATGGCACATGAAGCAGGTTTTTTAGGCTAACCACACGCTTTATTAATTGCTCAATAATGTTGT
GACGAATACACGTTTTTTGGCACATGAAGCAGTTGTCCCCATTTTCTCGCCCGGTGCAACGCACGGGCATTTGTACTAGT
ATGAAAACTACAACCAAATATGGAAGTCAGCTATGTATTGGCGAGGGTCTCTCTATGTGCATTGCGGTAACCATATTCTT
ATGATCCTAAGAAACTCACAGGTTACCTATGAT------------------ATACCCTGTGACGAGGAAGAGCAAAGAGG
CATCCTTCCTACTAGGTCGGTCTTAGCGAGTTATGAGAAAGGGATCCACTACGTGGCGCTCGACATGTTCCAACTCCAGG
TGTGGAAACTGACGGAACTTGTTGACGGGCGGTTAGGGTGGACACGTACACACGAGGCCAACCTTAGTCTTTTCAGTCAC
CAAATAAAGCGCTCATCACAAGTTATAAAATCAATGGCGCGATGGGAGTTGGTCGAAAGCAATGAAGCAAAAGCCAGCCT
CTTTGAACCCCCTCGGTGGCCAGAGCAAAGAGGAAGACGAAGATGAAGAAGAGAAAACCAAAAGTGGGTCCAACTACATG
TGGGACTCGGATGAGGATAACTTCATTGACTTGGACGAAGGTGTCGTTGTCCGACCCGAGCCGTTGGAGCACTGGTGGTA
CTGCAGGATCATCGGAATGCATCCGCACAAGGACGTGCTCCTCCTCCACATGAACGGTAGGGCGATGGCGTACCATCTTA
GCACCTCGAGGATGCAACACCTAGGCAAGGGGCTCGTCAAGGAAGTCGGCCGGTGGAACAGCGTCGAGCGTGCATTCCCT
TACCGCCCGTGCTACATGGACGCGCTCCCGGTGGGGAAGATGTCACGGTGAATGTATA-TA-----GAGAGCATTGTTGC
TTTCGTGCGTTTAAAAAAAAATCACGCTTTGCCGACTGGTA--GAGAGTTAGGTTACTCGAGCATCTTGTCGGAAGAACA
AGATTGTAAAAGAATGGAGGGAGTAAA-ATGATGATCAAGGAGGTGT-----GTGGCATATACGAGAAGTCCTGGATGGA
ACTCTGTGGTGTCACGGGTCAATAGGTGAAGAAGTGAATAGCGGCCTTGTGATCCAGAGCCCACATGTACCCCGATGAGT
AGTAAAATCGAAAAAAAAAGGTGATTGAAAATTTCCAACAATTCTGATATT--TTTTGGCAACAAACATTGATGAATATT
TTAACCGTGTGTAGATTTTCATGAGTGAATGACATTTGTGGAGGTCTGGGAG-AAAATGATTC-AAAAAAATATCTTTTT
GAAGCATTGATTTTATTTTTGTCCAAGACTTGCACCAATGTCATTCCATCATGAAATATGGCACGCAGATGAAGCATTCA
CCGATGTTTATCACAAAAAATGGGAATACTGTGGTGTTAAAATGTTTGTGTGGTCTTAGAGTTAGAGGACACTCTTATTC
GCAAAAAAAAAAGAGTTAGAGGACACTCCAGCGTGGAGCATGCCCACGCGTCAGTCGCCACGCAAGCTACAGTACGTGTT
GA---------------------------------------------------------------TTATCTCCTATCCTT
TTGTCTGAAACAGGACACGTCAGTG-----------------------------------------------------CT
GGTCAACTTTGGAAGCACG--TACGTGTACCCACATTGCTAGCAAT---------------------------GC---CT
GACAGTGGCACTGACTAAACTGAACTAATAACAGGCCAAATTAGTGATAATAGCAGCTTTATTAGGTGGGTTTGTGGGTG
GCTGGGACGAACAGACGATGCAGCATACATACGCGGAGCATGCATCTCGTAAAGCTAAGATTCTGCCGCTGTGTCAGAGC
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-----------------GAGCGAGGAGAATAAACATGTG----CGTCCTTGGAGGCTTCTTCTGACTTGCTAGCTCCTGC
TGACACAGGAATGGAATCATCTTA--------------------------------------------------------
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>chr4D_841
GGAA----------------------------------------------------------------------------
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---------------------------------------------------------------GCGGTCGGATCCCGCAT
CGAGGCACAAGAATTGGTGTGCGGGTCGTTGTTTGAGGAAGACCAGCCATATGAAGAAGAGGGAAAAGAAGAACAAGGTG
AGGT------------------------------------------------GTTGTCTTTAATGGTGTTCTCGTCAAGG
AGTAATATATGGGAGAGCCGAGAGTTTGTGCCCGGAAGCTGTTGCACTCCTCACCATCTCTACGACATGTTGCCTGTAT-
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ATGAAAACGACGATCAATTATGGAAGGCAGCTGTGTATTGGCGAGGGTCTCTCTATGTGCATTGCGGCAAAAATATTCTT
ATGATCCTAAGAAACTCACAGGTGACCTATGACATGGTCGAGCTGCCGGGAATA-CCTGTGACGAGGAAGAACATGGAGG
CATCCTTCCTACTAGGTCGGTCTTAGCGAGCTATGAGAAAGGGATCCACTACGTGGCGCTCGGCATGTTCCAACTTCAGG
TGTGGACACTGACAGAACCTGTTGATGGGCAGTTAGGATGGACGCTGACACACGAGGCCAACCTTAGTCCTCTTGGTCAC
CAAATAAAGCACTCGTCACAACTTATAAGACCAATGGCGCGATGGGAGGTGGTCGAAAGCAGTGAAGCAAAAGTCAGCCT
CTTTGGACCAC-TTAGTGGCCAGCGCAAAGAGGAAGATGAAGATGAAGAAGAGCAAGCCCAAAGTGGGTTTGGGTACTTG
TGGGACTCGGACGAGGATAACTTCATTGACCTGGACGAAGCTGCCGCTGACCGACTCGAGCCGCCAGACTATTGGTGGTA
CTGCAGAATAATTGGGATGCATCCACACAAGCACGCGCTCCTCCTCCACGTGAACGGCAGGGTCATGGTGTACCATCTTA
CCACCTCGAGGATGCAACACCTAGGCAAGGGGATCATCAAGGAAGTTGGTCGACGGAGCGGCATCGAGCGTGCGTTCCCT
TACCGCCCATGCTACACGGACGCGCTACCTGTGGGGAAGATGTCGCGGTGAATGTATCGTA-----GACAGCATGGTTGC
TTTCCTATGTTTTGAAAAATTGCACGCTTTGCCGA-TGGTA--GAGAGTTAGGTT-------------------------
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>chr4A_1377
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---------------------------------------------------------CCAACCTTAGTCCTTTCGGTCAC
CAAATAAAGCAGTCATACCAGCTTATAAAACCGATGGCGCAATGGGAGCTAGTCGAAAGCAGTGAAGCAAAAGTCAGCCT
CTTTGAACCCC-TCGGTGGCCAGAGCAAAGAGGAAGGCGAAGATGAAGAAGAGAAAACCAAAAGTGGGTCCAGCTACATG
TGGGACTCGGATGAGGATTACTTTATTGACTTGGACGAAGGTGTCGCCGACCGACCCGAGCCGTTGGAGTACTGGTGGTA
CTGCAGGATCATCGGAATGCATCCTCACAAAGACGTGCTCCTCCTCCACATGAACGGCAGGGCGATGGCATACCATCTCA
GCACCTCGATGATGCAACACCTGGGCAAGGGGCTCATCAAGGAAGTCGGCCGGCGGAACGGCGTCGAGCGCGCATTCCCT
TACCGCCCATGCTACATGGACGCGCTTCCGATGGGGAAGATGTCGGAGTGAATATATCGTA-----GAGAGCATGGTTGC
TTTCCGGTGTTATAAAAAGTTGCAGGCTTTGCCGACTTTGG--TAGAGTTAGATTACTCGAGCATCTTGCTAAAAGAACA
AGATTTTAAAAGAATTGAGGAAGTTGTCATGAAGATCAAGGAGGTGTTGGATGTGCCATATACGATAAGTCCTGGATGGA
ACTCTATGGTGTCATGGGTCAATAGATTG---------------------------------------------------
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-------------------------------------TAAGATGTCTGTGTGGTC-------------------------
---------------TTAGAGGACACTCCAGCGTGGTATACTTCCATCTTATGGTGGTTTTTC-----TTGTTGGTTTGT
TATCTGAACT--------------------------------AAATCGACTAAGAGGCTCGTTGTTTATCTCCTATCCTT
TTGTCAGAACCAAGACACGTCAGTACAGTAACACCATGCCGTGAACCTGTCTACAAGTCCCTGCATGTTACCTGT--ACT
GCTCAACTTTGAAGGCACG--TAGGTGTACATACATT-------------------------------------------
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>SNPs
SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-----S------SSSS------S-------------S----S------------------------S---S-----S---
-----------SS-S-S----S-S-SS----S--------SS-S------------S--S-S--S-S-S--------S--
SSS----SSSSSSSSSSSSSSSSSSSS---------S----------S--S-S---------------------------
---S-S------S-----------------------S--S--------S-------------------------------
------------------------SS------------------------------------------------------
-----S--------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
----SS------------------------------------------S-------------------------------
------------S----------------------------S------------------------------------S-
------------S-----------S------------------------------------------------S------
-----------------S-------------------S------------------------------------------
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------S-------------------------------------------------------------S-----------
----------------------------------------------------S---------------------------
----------------------------------------------------------------S---------------
---------S------------------------------------------------------------------S---
-------------S-----------S------------------------------------------------------
--------S---------------------------------------------------------------S-------
-S--S--------------------S------------------------------------------------------
----------------------------------S--------------SS--------------S--------------
-----------------------------------------------S-------------------------------S
-----S--------------------------------S--------------------------------S--------
----------------S-----S----------S------------------S---------------------------
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-----------------------------------------------------S--------------------------
-------------------------------------------------------------------------S----S-
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------------------------------------S-------------------------------------S-----
-------------------SS---------------------S---------S----------S----------------
--------S-----------------------------------------------------------------------
-----------------S--------------SS----S--------S------------------S--S---S--SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS----S-----------SSSSSSSSSS------------------------------S-SSS--
S-S---------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_108
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--------AGGTGCCACGAAATCGACTT----------------------------------------------------
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>reverse_5635
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----------------------------------TGTCAAGGAAGTCGGATGGC--------------------------
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>forward_230
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--------------------------------------------------ATGTCCTCTCCACCGATCGA----------
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>reverse_6517
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------------------------------------CGCCGTGAACCTGTCTACAA------------------------
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---------------------------------------------
