Multiple sequence alignment - TraesCS4A01G296500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G296500 chr4A 100.000 3439 0 0 1 3439 596572926 596569488 0.000000e+00 6351.0
1 TraesCS4A01G296500 chr4A 81.325 332 31 18 115 440 596572433 596572127 1.230000e-59 241.0
2 TraesCS4A01G296500 chr4A 81.325 332 31 18 494 800 596572812 596572487 1.230000e-59 241.0
3 TraesCS4A01G296500 chr4D 92.049 1132 64 12 1043 2161 6969365 6970483 0.000000e+00 1568.0
4 TraesCS4A01G296500 chr4D 84.239 368 31 6 2001 2350 6970380 6970738 1.980000e-87 333.0
5 TraesCS4A01G296500 chr4D 89.015 264 24 3 3123 3386 6971658 6971916 4.280000e-84 322.0
6 TraesCS4A01G296500 chr4D 80.952 273 27 8 2846 3115 6971294 6971544 3.500000e-45 193.0
7 TraesCS4A01G296500 chr4D 93.443 61 3 1 39 99 6967611 6967670 4.730000e-14 89.8
8 TraesCS4A01G296500 chr4B 86.867 1462 93 51 932 2345 12251496 12252906 0.000000e+00 1544.0
9 TraesCS4A01G296500 chr4B 81.061 396 58 9 49 439 12250913 12251296 2.010000e-77 300.0
10 TraesCS4A01G296500 chr4B 77.815 302 43 20 517 799 12251000 12251296 7.640000e-37 165.0
11 TraesCS4A01G296500 chr4B 83.871 93 11 4 647 737 560241626 560241716 6.120000e-13 86.1
12 TraesCS4A01G296500 chr4B 95.000 40 2 0 2856 2895 12253583 12253622 2.870000e-06 63.9
13 TraesCS4A01G296500 chr3D 95.189 291 11 1 1505 1795 442751279 442750992 1.120000e-124 457.0
14 TraesCS4A01G296500 chr3D 80.969 289 28 8 2007 2277 442750920 442750641 1.620000e-48 204.0
15 TraesCS4A01G296500 chr1B 77.841 880 86 52 1786 2583 616963234 616964086 8.760000e-121 444.0
16 TraesCS4A01G296500 chr1B 75.945 794 78 62 1875 2583 616956812 616956047 1.550000e-78 303.0
17 TraesCS4A01G296500 chr1B 94.565 92 5 0 1786 1877 616958810 616958719 3.580000e-30 143.0
18 TraesCS4A01G296500 chr2D 80.682 88 14 3 653 738 579388581 579388667 7.970000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G296500 chr4A 596569488 596572926 3438 True 2277.666667 6351 87.55000 1 3439 3 chr4A.!!$R1 3438
1 TraesCS4A01G296500 chr4D 6967611 6971916 4305 False 501.160000 1568 87.93960 39 3386 5 chr4D.!!$F1 3347
2 TraesCS4A01G296500 chr4B 12250913 12253622 2709 False 518.225000 1544 85.18575 49 2895 4 chr4B.!!$F2 2846
3 TraesCS4A01G296500 chr3D 442750641 442751279 638 True 330.500000 457 88.07900 1505 2277 2 chr3D.!!$R1 772
4 TraesCS4A01G296500 chr1B 616963234 616964086 852 False 444.000000 444 77.84100 1786 2583 1 chr1B.!!$F1 797
5 TraesCS4A01G296500 chr1B 616956047 616958810 2763 True 223.000000 303 85.25500 1786 2583 2 chr1B.!!$R1 797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 1443 0.039256 CAACAAACGCACCTCCCATG 60.039 55.000 0.00 0.0 0.00 3.66 F
914 1444 0.467290 AACAAACGCACCTCCCATGT 60.467 50.000 0.00 0.0 0.00 3.21 F
916 1446 0.673437 CAAACGCACCTCCCATGTTT 59.327 50.000 0.00 0.0 33.34 2.83 F
2133 4992 1.153706 AAATCGCCGGATTCGTCGT 60.154 52.632 5.05 0.0 41.99 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1847 2734 0.035458 AAGAACTTGACAGGGAGCCG 59.965 55.0 0.0 0.00 0.00 5.52 R
2123 4982 0.100861 GGAGAGGACACGACGAATCC 59.899 60.0 0.0 7.98 0.00 3.01 R
2361 5268 0.105607 AGGGATCGGGAGGTTCCTAC 60.106 60.0 0.0 0.00 36.57 3.18 R
3419 6716 0.038166 TTTTCCGCAGATGAAGCCCT 59.962 50.0 0.0 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.935194 TCTCTCCCTTCCTCCCTACC 59.065 60.000 0.00 0.00 0.00 3.18
20 21 0.105401 CTCTCCCTTCCTCCCTACCC 60.105 65.000 0.00 0.00 0.00 3.69
21 22 1.074395 CTCCCTTCCTCCCTACCCC 60.074 68.421 0.00 0.00 0.00 4.95
22 23 1.551964 TCCCTTCCTCCCTACCCCT 60.552 63.158 0.00 0.00 0.00 4.79
23 24 1.074395 CCCTTCCTCCCTACCCCTC 60.074 68.421 0.00 0.00 0.00 4.30
24 25 1.074395 CCTTCCTCCCTACCCCTCC 60.074 68.421 0.00 0.00 0.00 4.30
25 26 1.074395 CTTCCTCCCTACCCCTCCC 60.074 68.421 0.00 0.00 0.00 4.30
26 27 1.551964 TTCCTCCCTACCCCTCCCT 60.552 63.158 0.00 0.00 0.00 4.20
27 28 1.600763 TTCCTCCCTACCCCTCCCTC 61.601 65.000 0.00 0.00 0.00 4.30
28 29 2.615773 CTCCCTACCCCTCCCTCC 59.384 72.222 0.00 0.00 0.00 4.30
29 30 3.040814 TCCCTACCCCTCCCTCCC 61.041 72.222 0.00 0.00 0.00 4.30
30 31 3.043404 CCCTACCCCTCCCTCCCT 61.043 72.222 0.00 0.00 0.00 4.20
31 32 2.615773 CCTACCCCTCCCTCCCTC 59.384 72.222 0.00 0.00 0.00 4.30
32 33 2.021652 CCTACCCCTCCCTCCCTCT 61.022 68.421 0.00 0.00 0.00 3.69
33 34 1.544703 CTACCCCTCCCTCCCTCTC 59.455 68.421 0.00 0.00 0.00 3.20
34 35 1.230853 TACCCCTCCCTCCCTCTCA 60.231 63.158 0.00 0.00 0.00 3.27
35 36 0.858598 TACCCCTCCCTCCCTCTCAA 60.859 60.000 0.00 0.00 0.00 3.02
36 37 1.383803 CCCCTCCCTCCCTCTCAAG 60.384 68.421 0.00 0.00 0.00 3.02
37 38 1.706575 CCCTCCCTCCCTCTCAAGA 59.293 63.158 0.00 0.00 0.00 3.02
41 42 1.205893 CTCCCTCCCTCTCAAGAAACG 59.794 57.143 0.00 0.00 0.00 3.60
99 100 7.147461 GGATAAGGATAGAGGAAAAAGGACACT 60.147 40.741 0.00 0.00 0.00 3.55
100 101 5.685520 AGGATAGAGGAAAAAGGACACTC 57.314 43.478 0.00 0.00 0.00 3.51
101 102 5.094387 AGGATAGAGGAAAAAGGACACTCA 58.906 41.667 0.00 0.00 0.00 3.41
104 533 6.295916 GGATAGAGGAAAAAGGACACTCAAGA 60.296 42.308 0.00 0.00 0.00 3.02
109 538 4.152580 GGAAAAAGGACACTCAAGATCGTC 59.847 45.833 0.00 0.00 0.00 4.20
114 543 2.098443 GGACACTCAAGATCGTCCTCTC 59.902 54.545 7.69 0.00 43.79 3.20
115 544 2.750166 GACACTCAAGATCGTCCTCTCA 59.250 50.000 0.00 0.00 0.00 3.27
118 547 1.066908 CTCAAGATCGTCCTCTCAGGC 59.933 57.143 0.00 0.00 34.61 4.85
120 549 0.324738 AAGATCGTCCTCTCAGGCCA 60.325 55.000 5.01 0.00 34.61 5.36
123 552 0.467384 ATCGTCCTCTCAGGCCAATG 59.533 55.000 5.01 0.00 34.61 2.82
127 556 2.110967 CCTCTCAGGCCAATGCACG 61.111 63.158 5.01 0.00 40.13 5.34
128 557 2.046023 TCTCAGGCCAATGCACGG 60.046 61.111 5.01 0.00 40.13 4.94
159 590 2.851263 TTTTATGAGGTGGCACTCGT 57.149 45.000 18.45 15.50 40.39 4.18
160 591 2.093306 TTTATGAGGTGGCACTCGTG 57.907 50.000 18.45 0.00 40.39 4.35
191 622 7.332003 CTCAGATTCGTATAGAGCATTCAAC 57.668 40.000 0.00 0.00 0.00 3.18
193 624 5.915196 CAGATTCGTATAGAGCATTCAACGA 59.085 40.000 0.00 0.00 35.14 3.85
196 627 4.989044 TCGTATAGAGCATTCAACGACAA 58.011 39.130 0.00 0.00 33.36 3.18
204 635 5.288712 AGAGCATTCAACGACAACTAATACG 59.711 40.000 0.00 0.00 0.00 3.06
207 638 5.726679 GCATTCAACGACAACTAATACGTTC 59.273 40.000 0.00 0.00 44.90 3.95
234 665 4.632688 CCGAATTGGTATAAACCTGACGTT 59.367 41.667 0.00 0.00 46.91 3.99
256 687 8.827677 ACGTTAGATTTATAGCATTTGAGTTCC 58.172 33.333 0.00 0.00 0.00 3.62
264 695 4.126520 AGCATTTGAGTTCCCCCTTTTA 57.873 40.909 0.00 0.00 0.00 1.52
265 696 4.687976 AGCATTTGAGTTCCCCCTTTTAT 58.312 39.130 0.00 0.00 0.00 1.40
335 772 6.722590 ACCGTCTTAACCTTCCCATTTTTATT 59.277 34.615 0.00 0.00 0.00 1.40
341 778 9.423061 CTTAACCTTCCCATTTTTATTGACTTG 57.577 33.333 0.00 0.00 0.00 3.16
343 780 5.306678 ACCTTCCCATTTTTATTGACTTGCA 59.693 36.000 0.00 0.00 0.00 4.08
401 839 4.789095 CTTACCAAATAAGCGTGCGTAT 57.211 40.909 0.00 0.00 34.12 3.06
410 848 7.219154 CCAAATAAGCGTGCGTATCAAATAAAA 59.781 33.333 0.88 0.00 0.00 1.52
411 849 7.659290 AATAAGCGTGCGTATCAAATAAAAC 57.341 32.000 0.88 0.00 0.00 2.43
413 851 3.103007 GCGTGCGTATCAAATAAAACCC 58.897 45.455 0.00 0.00 0.00 4.11
414 852 3.181504 GCGTGCGTATCAAATAAAACCCT 60.182 43.478 0.00 0.00 0.00 4.34
415 853 4.034279 GCGTGCGTATCAAATAAAACCCTA 59.966 41.667 0.00 0.00 0.00 3.53
416 854 5.734311 CGTGCGTATCAAATAAAACCCTAG 58.266 41.667 0.00 0.00 0.00 3.02
417 855 5.521010 CGTGCGTATCAAATAAAACCCTAGA 59.479 40.000 0.00 0.00 0.00 2.43
484 922 7.945033 AAACACCAATTTACACAATCACATC 57.055 32.000 0.00 0.00 0.00 3.06
485 923 6.647334 ACACCAATTTACACAATCACATCA 57.353 33.333 0.00 0.00 0.00 3.07
489 927 9.806203 CACCAATTTACACAATCACATCAATAT 57.194 29.630 0.00 0.00 0.00 1.28
495 933 6.688637 ACACAATCACATCAATATGGACAG 57.311 37.500 0.00 0.00 37.43 3.51
497 935 4.581824 ACAATCACATCAATATGGACAGGC 59.418 41.667 0.00 0.00 37.43 4.85
499 937 3.544684 TCACATCAATATGGACAGGCAC 58.455 45.455 0.00 0.00 37.43 5.01
500 938 3.200605 TCACATCAATATGGACAGGCACT 59.799 43.478 0.00 0.00 36.76 4.40
501 939 4.408596 TCACATCAATATGGACAGGCACTA 59.591 41.667 0.00 0.00 35.01 2.74
503 941 5.766670 CACATCAATATGGACAGGCACTAAT 59.233 40.000 0.00 0.00 35.01 1.73
504 942 6.000219 ACATCAATATGGACAGGCACTAATC 59.000 40.000 0.00 0.00 35.01 1.75
505 943 5.628797 TCAATATGGACAGGCACTAATCA 57.371 39.130 0.00 0.00 36.02 2.57
506 944 5.368145 TCAATATGGACAGGCACTAATCAC 58.632 41.667 0.00 0.00 36.02 3.06
507 945 2.315925 ATGGACAGGCACTAATCACG 57.684 50.000 0.00 0.00 36.02 4.35
508 946 0.391130 TGGACAGGCACTAATCACGC 60.391 55.000 0.00 0.00 36.02 5.34
509 947 1.421410 GGACAGGCACTAATCACGCG 61.421 60.000 3.53 3.53 36.02 6.01
510 948 2.025359 GACAGGCACTAATCACGCGC 62.025 60.000 5.73 0.00 36.02 6.86
511 949 1.811266 CAGGCACTAATCACGCGCT 60.811 57.895 5.73 0.00 36.02 5.92
513 951 0.174845 AGGCACTAATCACGCGCTAA 59.825 50.000 5.73 0.00 36.02 3.09
514 952 0.300789 GGCACTAATCACGCGCTAAC 59.699 55.000 5.73 0.00 0.00 2.34
515 953 0.996462 GCACTAATCACGCGCTAACA 59.004 50.000 5.73 0.00 0.00 2.41
516 954 1.593006 GCACTAATCACGCGCTAACAT 59.407 47.619 5.73 0.00 0.00 2.71
517 955 2.030457 GCACTAATCACGCGCTAACATT 59.970 45.455 5.73 0.00 0.00 2.71
519 957 4.647964 CACTAATCACGCGCTAACATTTT 58.352 39.130 5.73 0.00 0.00 1.82
520 958 5.086058 CACTAATCACGCGCTAACATTTTT 58.914 37.500 5.73 0.00 0.00 1.94
541 979 5.664294 TTTTATGAGATGGCATTTGCACT 57.336 34.783 0.00 0.00 44.36 4.40
542 980 5.664294 TTTATGAGATGGCATTTGCACTT 57.336 34.783 0.00 0.00 44.36 3.16
543 981 3.520290 ATGAGATGGCATTTGCACTTG 57.480 42.857 0.00 0.00 44.36 3.16
544 982 1.067425 TGAGATGGCATTTGCACTTGC 60.067 47.619 10.84 10.84 44.36 4.01
546 984 1.689352 GATGGCATTTGCACTTGCGC 61.689 55.000 0.00 0.00 45.83 6.09
547 985 2.048877 GGCATTTGCACTTGCGCT 60.049 55.556 9.73 0.00 45.83 5.92
549 987 1.372004 GCATTTGCACTTGCGCTCA 60.372 52.632 9.73 0.00 45.83 4.26
550 988 1.342082 GCATTTGCACTTGCGCTCAG 61.342 55.000 9.73 7.35 45.83 3.35
551 989 0.239082 CATTTGCACTTGCGCTCAGA 59.761 50.000 9.73 0.00 45.83 3.27
553 991 0.953727 TTTGCACTTGCGCTCAGATT 59.046 45.000 9.73 0.00 45.83 2.40
554 992 0.518636 TTGCACTTGCGCTCAGATTC 59.481 50.000 9.73 0.75 45.83 2.52
555 993 1.059994 GCACTTGCGCTCAGATTCG 59.940 57.895 9.73 0.00 0.00 3.34
556 994 1.630244 GCACTTGCGCTCAGATTCGT 61.630 55.000 9.73 0.00 0.00 3.85
557 995 0.094216 CACTTGCGCTCAGATTCGTG 59.906 55.000 9.73 0.49 0.00 4.35
558 996 1.059994 CTTGCGCTCAGATTCGTGC 59.940 57.895 9.73 0.00 37.18 5.34
559 997 1.629345 CTTGCGCTCAGATTCGTGCA 61.629 55.000 9.73 0.00 44.01 4.57
560 998 1.629345 TTGCGCTCAGATTCGTGCAG 61.629 55.000 9.73 0.00 45.90 4.41
561 999 1.807165 GCGCTCAGATTCGTGCAGA 60.807 57.895 0.00 0.00 36.69 4.26
562 1000 1.750572 GCGCTCAGATTCGTGCAGAG 61.751 60.000 0.00 0.00 36.69 3.35
563 1001 1.750572 CGCTCAGATTCGTGCAGAGC 61.751 60.000 10.85 10.85 46.07 4.09
564 1002 3.430779 CTCAGATTCGTGCAGAGCA 57.569 52.632 0.00 0.00 35.60 4.26
565 1003 1.937278 CTCAGATTCGTGCAGAGCAT 58.063 50.000 0.00 0.00 41.91 3.79
566 1004 2.277969 CTCAGATTCGTGCAGAGCATT 58.722 47.619 0.00 0.00 41.91 3.56
567 1005 2.274437 TCAGATTCGTGCAGAGCATTC 58.726 47.619 0.00 0.00 41.91 2.67
571 1009 0.319469 TTCGTGCAGAGCATTCGACA 60.319 50.000 4.52 0.00 41.91 4.35
572 1010 0.319469 TCGTGCAGAGCATTCGACAA 60.319 50.000 0.00 0.00 41.91 3.18
575 1013 1.136141 GTGCAGAGCATTCGACAACAG 60.136 52.381 0.00 0.00 41.91 3.16
576 1014 0.179205 GCAGAGCATTCGACAACAGC 60.179 55.000 0.00 0.00 0.00 4.40
577 1015 1.436600 CAGAGCATTCGACAACAGCT 58.563 50.000 0.00 0.00 38.43 4.24
578 1016 2.610433 CAGAGCATTCGACAACAGCTA 58.390 47.619 0.00 0.00 35.36 3.32
579 1017 2.995939 CAGAGCATTCGACAACAGCTAA 59.004 45.455 0.00 0.00 35.36 3.09
580 1018 3.620374 CAGAGCATTCGACAACAGCTAAT 59.380 43.478 0.00 0.00 35.36 1.73
581 1019 4.805719 CAGAGCATTCGACAACAGCTAATA 59.194 41.667 0.00 0.00 35.36 0.98
582 1020 4.806247 AGAGCATTCGACAACAGCTAATAC 59.194 41.667 0.00 0.00 35.36 1.89
583 1021 3.551890 AGCATTCGACAACAGCTAATACG 59.448 43.478 0.00 0.00 33.06 3.06
584 1022 3.306166 GCATTCGACAACAGCTAATACGT 59.694 43.478 0.00 0.00 0.00 3.57
585 1023 4.501559 GCATTCGACAACAGCTAATACGTA 59.498 41.667 0.00 0.00 0.00 3.57
586 1024 5.553952 GCATTCGACAACAGCTAATACGTAC 60.554 44.000 0.00 0.00 0.00 3.67
588 1026 4.901814 TCGACAACAGCTAATACGTACTC 58.098 43.478 0.00 0.00 0.00 2.59
589 1027 4.633126 TCGACAACAGCTAATACGTACTCT 59.367 41.667 0.00 0.00 0.00 3.24
590 1028 4.962751 CGACAACAGCTAATACGTACTCTC 59.037 45.833 0.00 0.00 0.00 3.20
591 1029 4.906423 ACAACAGCTAATACGTACTCTCG 58.094 43.478 0.00 0.00 0.00 4.04
592 1030 4.633126 ACAACAGCTAATACGTACTCTCGA 59.367 41.667 0.00 0.00 34.70 4.04
593 1031 5.122869 ACAACAGCTAATACGTACTCTCGAA 59.877 40.000 0.00 0.00 34.70 3.71
594 1032 6.183360 ACAACAGCTAATACGTACTCTCGAAT 60.183 38.462 0.00 0.00 34.70 3.34
596 1034 6.200100 ACAGCTAATACGTACTCTCGAATTG 58.800 40.000 0.00 0.00 34.70 2.32
597 1035 5.115773 CAGCTAATACGTACTCTCGAATTGC 59.884 44.000 0.00 0.00 34.70 3.56
600 1038 7.022384 GCTAATACGTACTCTCGAATTGCTAT 58.978 38.462 0.00 0.00 34.70 2.97
603 1041 8.725212 AATACGTACTCTCGAATTGCTATAAC 57.275 34.615 0.00 0.00 34.70 1.89
604 1042 6.127810 ACGTACTCTCGAATTGCTATAACA 57.872 37.500 0.00 0.00 34.70 2.41
605 1043 6.736123 ACGTACTCTCGAATTGCTATAACAT 58.264 36.000 0.00 0.00 34.70 2.71
606 1044 7.201145 ACGTACTCTCGAATTGCTATAACATT 58.799 34.615 0.00 0.00 34.70 2.71
607 1045 7.705325 ACGTACTCTCGAATTGCTATAACATTT 59.295 33.333 0.00 0.00 34.70 2.32
608 1046 7.998767 CGTACTCTCGAATTGCTATAACATTTG 59.001 37.037 0.00 0.00 0.00 2.32
609 1047 9.031360 GTACTCTCGAATTGCTATAACATTTGA 57.969 33.333 0.00 0.00 0.00 2.69
610 1048 8.136057 ACTCTCGAATTGCTATAACATTTGAG 57.864 34.615 0.00 0.00 0.00 3.02
612 1050 6.763135 TCTCGAATTGCTATAACATTTGAGCT 59.237 34.615 0.00 0.00 35.89 4.09
614 1052 6.017934 TCGAATTGCTATAACATTTGAGCTCC 60.018 38.462 12.15 0.00 35.89 4.70
616 1054 3.820557 TGCTATAACATTTGAGCTCCCC 58.179 45.455 12.15 0.00 35.89 4.81
617 1055 3.149981 GCTATAACATTTGAGCTCCCCC 58.850 50.000 12.15 0.00 32.04 5.40
621 1059 2.702270 ACATTTGAGCTCCCCCTTTT 57.298 45.000 12.15 0.00 0.00 2.27
622 1060 3.825908 ACATTTGAGCTCCCCCTTTTA 57.174 42.857 12.15 0.00 0.00 1.52
624 1062 4.687976 ACATTTGAGCTCCCCCTTTTATT 58.312 39.130 12.15 0.00 0.00 1.40
628 1066 2.307686 TGAGCTCCCCCTTTTATTCGTT 59.692 45.455 12.15 0.00 0.00 3.85
630 1068 3.762288 GAGCTCCCCCTTTTATTCGTTTT 59.238 43.478 0.87 0.00 0.00 2.43
631 1069 3.762288 AGCTCCCCCTTTTATTCGTTTTC 59.238 43.478 0.00 0.00 0.00 2.29
633 1071 4.159693 GCTCCCCCTTTTATTCGTTTTCAT 59.840 41.667 0.00 0.00 0.00 2.57
634 1072 5.337250 GCTCCCCCTTTTATTCGTTTTCATT 60.337 40.000 0.00 0.00 0.00 2.57
635 1073 6.275494 TCCCCCTTTTATTCGTTTTCATTC 57.725 37.500 0.00 0.00 0.00 2.67
637 1075 7.176490 TCCCCCTTTTATTCGTTTTCATTCTA 58.824 34.615 0.00 0.00 0.00 2.10
639 1077 8.135529 CCCCCTTTTATTCGTTTTCATTCTATC 58.864 37.037 0.00 0.00 0.00 2.08
640 1078 8.903820 CCCCTTTTATTCGTTTTCATTCTATCT 58.096 33.333 0.00 0.00 0.00 1.98
641 1079 9.937175 CCCTTTTATTCGTTTTCATTCTATCTC 57.063 33.333 0.00 0.00 0.00 2.75
645 1083 9.667107 TTTATTCGTTTTCATTCTATCTCTGGT 57.333 29.630 0.00 0.00 0.00 4.00
647 1085 7.979444 TTCGTTTTCATTCTATCTCTGGTTT 57.021 32.000 0.00 0.00 0.00 3.27
648 1086 7.979444 TCGTTTTCATTCTATCTCTGGTTTT 57.021 32.000 0.00 0.00 0.00 2.43
682 1120 8.915871 GTTTTCTTAAAAACCGTCTTAACCTT 57.084 30.769 3.02 0.00 45.57 3.50
683 1121 9.357652 GTTTTCTTAAAAACCGTCTTAACCTTT 57.642 29.630 3.02 0.00 45.57 3.11
684 1122 9.571810 TTTTCTTAAAAACCGTCTTAACCTTTC 57.428 29.630 0.00 0.00 29.44 2.62
685 1123 7.263100 TCTTAAAAACCGTCTTAACCTTTCC 57.737 36.000 0.00 0.00 0.00 3.13
721 1159 8.907222 ACTTGCCAAATAAAATCATGTTTTCT 57.093 26.923 2.31 0.00 0.00 2.52
722 1160 9.341078 ACTTGCCAAATAAAATCATGTTTTCTT 57.659 25.926 2.31 1.65 0.00 2.52
755 1194 8.308207 ACCAATAAATGCTTACCAAATAAACGT 58.692 29.630 0.00 0.00 0.00 3.99
756 1195 8.591312 CCAATAAATGCTTACCAAATAAACGTG 58.409 33.333 0.00 0.00 0.00 4.49
757 1196 7.749539 ATAAATGCTTACCAAATAAACGTGC 57.250 32.000 0.00 0.00 0.00 5.34
758 1197 3.190314 TGCTTACCAAATAAACGTGCG 57.810 42.857 0.00 0.00 0.00 5.34
766 1206 5.148568 ACCAAATAAACGTGCGTATCAAAC 58.851 37.500 0.00 0.00 0.00 2.93
770 1210 7.306051 CCAAATAAACGTGCGTATCAAACAAAA 60.306 33.333 0.00 0.00 0.00 2.44
826 1311 4.393990 TCGCTGAAACGAGTGTATCTAGAA 59.606 41.667 0.00 0.00 37.09 2.10
834 1319 3.707793 GAGTGTATCTAGAACCGCCAAG 58.292 50.000 0.00 0.00 0.00 3.61
837 1322 2.434336 TGTATCTAGAACCGCCAAGCAT 59.566 45.455 0.00 0.00 0.00 3.79
849 1334 3.583806 CGCCAAGCATCCAAAAATACAA 58.416 40.909 0.00 0.00 0.00 2.41
853 1338 5.163834 GCCAAGCATCCAAAAATACAACATG 60.164 40.000 0.00 0.00 0.00 3.21
854 1339 5.163834 CCAAGCATCCAAAAATACAACATGC 60.164 40.000 0.00 0.00 36.27 4.06
855 1340 4.506758 AGCATCCAAAAATACAACATGCC 58.493 39.130 0.00 0.00 36.61 4.40
856 1341 3.306703 GCATCCAAAAATACAACATGCCG 59.693 43.478 0.00 0.00 30.98 5.69
857 1342 4.742417 CATCCAAAAATACAACATGCCGA 58.258 39.130 0.00 0.00 0.00 5.54
859 1344 4.551388 TCCAAAAATACAACATGCCGAAC 58.449 39.130 0.00 0.00 0.00 3.95
861 1346 4.385447 CCAAAAATACAACATGCCGAACAG 59.615 41.667 0.00 0.00 0.00 3.16
862 1347 2.919666 AATACAACATGCCGAACAGC 57.080 45.000 0.00 0.00 0.00 4.40
887 1417 1.802880 CGCACCTCCCATTCTTAGACG 60.803 57.143 0.00 0.00 0.00 4.18
900 1430 5.821516 TTCTTAGACGAAAAGCCAACAAA 57.178 34.783 0.00 0.00 0.00 2.83
901 1431 5.164606 TCTTAGACGAAAAGCCAACAAAC 57.835 39.130 0.00 0.00 0.00 2.93
902 1432 2.468532 AGACGAAAAGCCAACAAACG 57.531 45.000 0.00 0.00 0.00 3.60
903 1433 0.843872 GACGAAAAGCCAACAAACGC 59.156 50.000 0.00 0.00 0.00 4.84
904 1434 0.171455 ACGAAAAGCCAACAAACGCA 59.829 45.000 0.00 0.00 0.00 5.24
905 1435 0.570272 CGAAAAGCCAACAAACGCAC 59.430 50.000 0.00 0.00 0.00 5.34
907 1437 0.534873 AAAAGCCAACAAACGCACCT 59.465 45.000 0.00 0.00 0.00 4.00
909 1439 1.734388 AAGCCAACAAACGCACCTCC 61.734 55.000 0.00 0.00 0.00 4.30
910 1440 3.039134 CCAACAAACGCACCTCCC 58.961 61.111 0.00 0.00 0.00 4.30
912 1442 1.178534 CCAACAAACGCACCTCCCAT 61.179 55.000 0.00 0.00 0.00 4.00
913 1443 0.039256 CAACAAACGCACCTCCCATG 60.039 55.000 0.00 0.00 0.00 3.66
914 1444 0.467290 AACAAACGCACCTCCCATGT 60.467 50.000 0.00 0.00 0.00 3.21
915 1445 0.467290 ACAAACGCACCTCCCATGTT 60.467 50.000 0.00 0.00 0.00 2.71
916 1446 0.673437 CAAACGCACCTCCCATGTTT 59.327 50.000 0.00 0.00 33.34 2.83
917 1447 0.673437 AAACGCACCTCCCATGTTTG 59.327 50.000 0.00 0.00 32.02 2.93
918 1448 1.178534 AACGCACCTCCCATGTTTGG 61.179 55.000 0.00 0.00 43.23 3.28
939 1484 4.787280 CCCACTCGCTCCCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
941 1486 3.151022 CACTCGCTCCCTCCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
942 1487 4.824515 ACTCGCTCCCTCCCTCCG 62.825 72.222 0.00 0.00 0.00 4.63
961 1508 3.705072 TCCGTCTTCCTCTTTCTATTCCC 59.295 47.826 0.00 0.00 0.00 3.97
1016 1567 3.656045 CACCACCAAACGCCGGAC 61.656 66.667 5.05 0.00 0.00 4.79
1248 2123 3.130160 GCCGCCTCAAGAAGCAGG 61.130 66.667 0.00 0.00 0.00 4.85
1249 2124 2.437359 CCGCCTCAAGAAGCAGGG 60.437 66.667 0.00 0.00 0.00 4.45
1250 2125 3.130160 CGCCTCAAGAAGCAGGGC 61.130 66.667 0.00 0.00 39.43 5.19
1301 2179 2.360585 CCCCCTTTGCCTTCCTCC 59.639 66.667 0.00 0.00 0.00 4.30
1790 2677 2.756283 CCGAGGAAGAGGTCGCCT 60.756 66.667 0.00 0.00 36.03 5.52
1844 2731 2.785868 CCGGAAGATTGGCAAGGAG 58.214 57.895 5.96 0.00 0.00 3.69
1847 2734 1.756430 GGAAGATTGGCAAGGAGTCC 58.244 55.000 5.96 0.00 0.00 3.85
2043 4845 3.207669 CTCTCCGCCTTGGCATGC 61.208 66.667 9.90 9.90 37.80 4.06
2052 4854 2.596923 TTGGCATGCTTGACGGCA 60.597 55.556 18.92 1.60 46.63 5.69
2133 4992 1.153706 AAATCGCCGGATTCGTCGT 60.154 52.632 5.05 0.00 41.99 4.34
2135 4994 2.552585 AATCGCCGGATTCGTCGTGT 62.553 55.000 5.05 0.00 38.51 4.49
2146 5005 3.429141 GTCGTGTCCTCTCCGCGA 61.429 66.667 8.23 0.00 41.97 5.87
2255 5159 3.319926 GACCGTGGTCGTCCTCGTC 62.320 68.421 18.93 13.35 45.58 4.20
2308 5212 4.025401 CACCGTGCTTTGGTCCGC 62.025 66.667 0.00 0.00 37.72 5.54
2362 5269 4.395080 CGATGGATGTACGCACGT 57.605 55.556 0.00 0.00 0.00 4.49
2367 5318 1.175654 TGGATGTACGCACGTAGGAA 58.824 50.000 2.62 0.00 0.00 3.36
2376 5327 1.673808 GCACGTAGGAACCTCCCGAT 61.674 60.000 15.99 2.72 37.19 4.18
2377 5328 0.384669 CACGTAGGAACCTCCCGATC 59.615 60.000 15.99 0.00 37.19 3.69
2415 5366 6.785488 TGCAAGTAAATTAGTGAGTGAGTG 57.215 37.500 0.00 0.00 0.00 3.51
2462 5417 7.618512 AGCGGTGGTACTATAATCCTTACATAT 59.381 37.037 0.00 0.00 0.00 1.78
2517 5479 2.052468 TCCATGATCCCTGATGGTCTG 58.948 52.381 9.07 0.00 40.21 3.51
2573 5559 2.600388 CTGTCGTTTCAGCCGTTCA 58.400 52.632 0.00 0.00 0.00 3.18
2574 5560 0.232303 CTGTCGTTTCAGCCGTTCAC 59.768 55.000 0.00 0.00 0.00 3.18
2575 5561 1.155424 TGTCGTTTCAGCCGTTCACC 61.155 55.000 0.00 0.00 0.00 4.02
2576 5562 1.595929 TCGTTTCAGCCGTTCACCC 60.596 57.895 0.00 0.00 0.00 4.61
2577 5563 2.943653 GTTTCAGCCGTTCACCCG 59.056 61.111 0.00 0.00 0.00 5.28
2578 5564 2.975799 TTTCAGCCGTTCACCCGC 60.976 61.111 0.00 0.00 0.00 6.13
2579 5565 3.758973 TTTCAGCCGTTCACCCGCA 62.759 57.895 0.00 0.00 0.00 5.69
2580 5566 4.980805 TCAGCCGTTCACCCGCAC 62.981 66.667 0.00 0.00 0.00 5.34
2582 5568 4.555709 AGCCGTTCACCCGCACAA 62.556 61.111 0.00 0.00 0.00 3.33
2583 5569 4.025401 GCCGTTCACCCGCACAAG 62.025 66.667 0.00 0.00 0.00 3.16
2584 5570 4.025401 CCGTTCACCCGCACAAGC 62.025 66.667 0.00 0.00 37.42 4.01
2659 5645 0.838122 AGGTGTTGGGACAGAGAGGG 60.838 60.000 0.00 0.00 42.39 4.30
2665 5651 2.671682 GGACAGAGAGGGCCAACC 59.328 66.667 6.18 0.00 40.67 3.77
2674 5660 2.983592 GGGCCAACCGGTTCAGTG 60.984 66.667 19.24 6.99 36.48 3.66
2675 5661 3.670377 GGCCAACCGGTTCAGTGC 61.670 66.667 19.24 16.99 33.28 4.40
2676 5662 2.904866 GCCAACCGGTTCAGTGCA 60.905 61.111 19.24 0.00 33.28 4.57
2711 5697 2.047655 TGCGATCCCAACACGACC 60.048 61.111 0.00 0.00 0.00 4.79
2713 5699 1.669760 GCGATCCCAACACGACCAA 60.670 57.895 0.00 0.00 0.00 3.67
2744 5730 1.868997 CGTTTCGCTTGCACTCCAT 59.131 52.632 0.00 0.00 0.00 3.41
2746 5732 1.665679 CGTTTCGCTTGCACTCCATAT 59.334 47.619 0.00 0.00 0.00 1.78
2749 5735 0.829990 TCGCTTGCACTCCATATGGA 59.170 50.000 23.17 23.17 43.08 3.41
2750 5736 0.940126 CGCTTGCACTCCATATGGAC 59.060 55.000 20.98 11.81 39.78 4.02
2760 5746 3.264193 ACTCCATATGGACAGACAAAGCA 59.736 43.478 20.98 0.00 39.78 3.91
2788 5778 3.213506 CCATCGATATGGCTTTGTCCAA 58.786 45.455 0.00 0.00 46.17 3.53
2789 5779 3.631686 CCATCGATATGGCTTTGTCCAAA 59.368 43.478 0.00 0.00 46.17 3.28
2790 5780 4.261322 CCATCGATATGGCTTTGTCCAAAG 60.261 45.833 14.04 14.04 46.17 2.77
2866 6055 1.331399 CCCGTTCTCCTTCTCCCTCC 61.331 65.000 0.00 0.00 0.00 4.30
2964 6156 2.715624 CGGCGATAAAGGCAAGGC 59.284 61.111 0.00 0.00 36.37 4.35
2967 6159 2.760159 GCGATAAAGGCAAGGCGCA 61.760 57.895 10.83 0.00 45.17 6.09
2971 6163 1.678101 GATAAAGGCAAGGCGCAGATT 59.322 47.619 10.83 0.00 45.17 2.40
2972 6164 2.411628 TAAAGGCAAGGCGCAGATTA 57.588 45.000 10.83 0.00 45.17 1.75
2975 6167 2.638480 AGGCAAGGCGCAGATTAATA 57.362 45.000 10.83 0.00 45.17 0.98
2976 6168 2.930950 AGGCAAGGCGCAGATTAATAA 58.069 42.857 10.83 0.00 45.17 1.40
2977 6169 3.287222 AGGCAAGGCGCAGATTAATAAA 58.713 40.909 10.83 0.00 45.17 1.40
2980 6172 3.908382 GCAAGGCGCAGATTAATAAATCG 59.092 43.478 10.83 0.00 45.24 3.34
2981 6173 4.319477 GCAAGGCGCAGATTAATAAATCGA 60.319 41.667 10.83 0.00 45.24 3.59
2983 6175 5.786401 AGGCGCAGATTAATAAATCGATC 57.214 39.130 10.83 0.00 45.24 3.69
2984 6176 5.237815 AGGCGCAGATTAATAAATCGATCA 58.762 37.500 10.83 0.00 45.24 2.92
2985 6177 5.349817 AGGCGCAGATTAATAAATCGATCAG 59.650 40.000 10.83 0.00 45.24 2.90
2986 6178 5.018240 GCGCAGATTAATAAATCGATCAGC 58.982 41.667 0.30 0.00 45.24 4.26
2987 6179 5.389830 GCGCAGATTAATAAATCGATCAGCA 60.390 40.000 0.30 0.00 45.24 4.41
3014 6206 4.954118 TGGACGGTCCAGCCCAGT 62.954 66.667 25.53 0.00 42.67 4.00
3015 6207 4.083862 GGACGGTCCAGCCCAGTC 62.084 72.222 22.10 0.00 36.28 3.51
3016 6208 4.083862 GACGGTCCAGCCCAGTCC 62.084 72.222 0.00 0.00 0.00 3.85
3017 6209 4.954118 ACGGTCCAGCCCAGTCCA 62.954 66.667 0.00 0.00 0.00 4.02
3018 6210 4.087892 CGGTCCAGCCCAGTCCAG 62.088 72.222 0.00 0.00 0.00 3.86
3019 6211 4.416738 GGTCCAGCCCAGTCCAGC 62.417 72.222 0.00 0.00 0.00 4.85
3114 6306 2.660552 CGTTCTCCACGGCGTTGT 60.661 61.111 11.19 0.00 45.89 3.32
3115 6307 2.241880 CGTTCTCCACGGCGTTGTT 61.242 57.895 11.19 0.00 45.89 2.83
3116 6308 1.768112 CGTTCTCCACGGCGTTGTTT 61.768 55.000 11.19 0.00 45.89 2.83
3117 6309 1.219646 GTTCTCCACGGCGTTGTTTA 58.780 50.000 11.19 0.00 0.00 2.01
3119 6311 1.434555 TCTCCACGGCGTTGTTTATG 58.565 50.000 11.19 0.00 0.00 1.90
3120 6312 0.179200 CTCCACGGCGTTGTTTATGC 60.179 55.000 11.19 0.00 38.08 3.14
3137 6434 2.577059 CCGGCCAAAGTCTCGCTA 59.423 61.111 2.24 0.00 0.00 4.26
3197 6494 0.240145 GCTACACCGGCCAAAAACTC 59.760 55.000 0.00 0.00 0.00 3.01
3210 6507 6.110033 GGCCAAAAACTCCTTTTCTACAAAA 58.890 36.000 0.00 0.00 34.91 2.44
3221 6518 5.278266 CCTTTTCTACAAAACTCATCGCCAA 60.278 40.000 0.00 0.00 0.00 4.52
3225 6522 3.904136 ACAAAACTCATCGCCAAAGAG 57.096 42.857 0.00 0.00 35.56 2.85
3232 6529 1.089920 CATCGCCAAAGAGGGTCTTG 58.910 55.000 0.00 0.00 36.71 3.02
3242 6539 1.905894 AGAGGGTCTTGGAGCTTCTTC 59.094 52.381 5.72 0.00 42.28 2.87
3250 6547 3.056749 TCTTGGAGCTTCTTCGAGTAACC 60.057 47.826 0.00 0.00 0.00 2.85
3253 6550 0.108756 AGCTTCTTCGAGTAACCGGC 60.109 55.000 0.00 0.00 0.00 6.13
3277 6574 2.719046 GTGCACGAATTCAAAAACTCCG 59.281 45.455 0.00 0.00 0.00 4.63
3289 6586 5.344884 TCAAAAACTCCGTTTCCACATTTC 58.655 37.500 0.00 0.00 34.43 2.17
3299 6596 1.234821 TCCACATTTCGTGCTGGTTC 58.765 50.000 0.00 0.00 44.91 3.62
3319 6616 3.079578 TCGCTATCCGTTGGAGTATAGG 58.920 50.000 0.00 0.00 34.05 2.57
3320 6617 3.079578 CGCTATCCGTTGGAGTATAGGA 58.920 50.000 0.00 0.00 34.05 2.94
3323 6620 4.951094 GCTATCCGTTGGAGTATAGGATCT 59.049 45.833 0.00 0.00 41.46 2.75
3335 6632 6.551601 GGAGTATAGGATCTGACTTTCTTCCA 59.448 42.308 0.00 0.00 0.00 3.53
3345 6642 6.755206 TCTGACTTTCTTCCATACTTCGAAA 58.245 36.000 0.00 0.00 0.00 3.46
3349 6646 8.504005 TGACTTTCTTCCATACTTCGAAATTTC 58.496 33.333 8.20 8.20 0.00 2.17
3350 6647 7.817641 ACTTTCTTCCATACTTCGAAATTTCC 58.182 34.615 12.54 0.00 0.00 3.13
3351 6648 6.417191 TTCTTCCATACTTCGAAATTTCCG 57.583 37.500 12.54 7.95 0.00 4.30
3362 6659 2.095372 CGAAATTTCCGAGTAACTGGCC 59.905 50.000 12.54 0.00 0.00 5.36
3371 6668 1.376683 GTAACTGGCCGGTGCATGA 60.377 57.895 20.54 0.00 40.13 3.07
3378 6675 0.461135 GGCCGGTGCATGAATTCAAT 59.539 50.000 13.09 0.00 40.13 2.57
3386 6683 6.373779 CGGTGCATGAATTCAATAAGGTATC 58.626 40.000 13.09 0.00 0.00 2.24
3387 6684 6.568462 CGGTGCATGAATTCAATAAGGTATCC 60.568 42.308 13.09 5.21 0.00 2.59
3388 6685 6.373779 GTGCATGAATTCAATAAGGTATCCG 58.626 40.000 13.09 0.00 0.00 4.18
3389 6686 6.204688 GTGCATGAATTCAATAAGGTATCCGA 59.795 38.462 13.09 0.00 0.00 4.55
3390 6687 6.427853 TGCATGAATTCAATAAGGTATCCGAG 59.572 38.462 13.09 0.00 0.00 4.63
3391 6688 6.128172 GCATGAATTCAATAAGGTATCCGAGG 60.128 42.308 13.09 0.00 0.00 4.63
3392 6689 6.740944 TGAATTCAATAAGGTATCCGAGGA 57.259 37.500 5.45 0.00 0.00 3.71
3393 6690 6.759272 TGAATTCAATAAGGTATCCGAGGAG 58.241 40.000 5.45 0.00 0.00 3.69
3394 6691 6.326583 TGAATTCAATAAGGTATCCGAGGAGT 59.673 38.462 5.45 0.00 0.00 3.85
3395 6692 5.531122 TTCAATAAGGTATCCGAGGAGTG 57.469 43.478 0.00 0.00 0.00 3.51
3396 6693 4.800023 TCAATAAGGTATCCGAGGAGTGA 58.200 43.478 0.00 0.00 0.00 3.41
3397 6694 5.205821 TCAATAAGGTATCCGAGGAGTGAA 58.794 41.667 0.00 0.00 0.00 3.18
3398 6695 5.839063 TCAATAAGGTATCCGAGGAGTGAAT 59.161 40.000 0.00 0.00 0.00 2.57
3399 6696 6.326583 TCAATAAGGTATCCGAGGAGTGAATT 59.673 38.462 0.00 0.00 0.00 2.17
3400 6697 4.408182 AAGGTATCCGAGGAGTGAATTG 57.592 45.455 0.00 0.00 0.00 2.32
3401 6698 2.103263 AGGTATCCGAGGAGTGAATTGC 59.897 50.000 0.00 0.00 0.00 3.56
3402 6699 2.158957 GGTATCCGAGGAGTGAATTGCA 60.159 50.000 0.00 0.00 0.00 4.08
3403 6700 2.787473 ATCCGAGGAGTGAATTGCAA 57.213 45.000 0.00 0.00 0.00 4.08
3404 6701 2.559698 TCCGAGGAGTGAATTGCAAA 57.440 45.000 1.71 0.00 0.00 3.68
3405 6702 2.857483 TCCGAGGAGTGAATTGCAAAA 58.143 42.857 1.71 0.00 0.00 2.44
3406 6703 3.218453 TCCGAGGAGTGAATTGCAAAAA 58.782 40.909 1.71 0.00 0.00 1.94
3427 6724 6.926630 AAAACAACCATATTTAGGGCTTCA 57.073 33.333 0.00 0.00 0.00 3.02
3428 6725 7.494922 AAAACAACCATATTTAGGGCTTCAT 57.505 32.000 0.00 0.00 0.00 2.57
3429 6726 6.715347 AACAACCATATTTAGGGCTTCATC 57.285 37.500 0.00 0.00 0.00 2.92
3430 6727 6.018433 ACAACCATATTTAGGGCTTCATCT 57.982 37.500 0.00 0.00 0.00 2.90
3431 6728 5.829924 ACAACCATATTTAGGGCTTCATCTG 59.170 40.000 0.00 0.00 0.00 2.90
3432 6729 4.401925 ACCATATTTAGGGCTTCATCTGC 58.598 43.478 0.00 0.00 0.00 4.26
3433 6730 3.438087 CCATATTTAGGGCTTCATCTGCG 59.562 47.826 0.00 0.00 0.00 5.18
3434 6731 1.972872 ATTTAGGGCTTCATCTGCGG 58.027 50.000 0.00 0.00 0.00 5.69
3435 6732 0.908910 TTTAGGGCTTCATCTGCGGA 59.091 50.000 0.00 0.00 0.00 5.54
3436 6733 0.908910 TTAGGGCTTCATCTGCGGAA 59.091 50.000 0.00 0.00 0.00 4.30
3437 6734 0.908910 TAGGGCTTCATCTGCGGAAA 59.091 50.000 0.00 0.00 0.00 3.13
3438 6735 0.038166 AGGGCTTCATCTGCGGAAAA 59.962 50.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.935194 GGTAGGGAGGAAGGGAGAGA 59.065 60.000 0.00 0.00 0.00 3.10
1 2 0.105401 GGGTAGGGAGGAAGGGAGAG 60.105 65.000 0.00 0.00 0.00 3.20
2 3 1.600763 GGGGTAGGGAGGAAGGGAGA 61.601 65.000 0.00 0.00 0.00 3.71
3 4 1.074395 GGGGTAGGGAGGAAGGGAG 60.074 68.421 0.00 0.00 0.00 4.30
4 5 1.551964 AGGGGTAGGGAGGAAGGGA 60.552 63.158 0.00 0.00 0.00 4.20
5 6 1.074395 GAGGGGTAGGGAGGAAGGG 60.074 68.421 0.00 0.00 0.00 3.95
6 7 1.074395 GGAGGGGTAGGGAGGAAGG 60.074 68.421 0.00 0.00 0.00 3.46
7 8 1.074395 GGGAGGGGTAGGGAGGAAG 60.074 68.421 0.00 0.00 0.00 3.46
8 9 1.551964 AGGGAGGGGTAGGGAGGAA 60.552 63.158 0.00 0.00 0.00 3.36
9 10 2.019272 GAGGGAGGGGTAGGGAGGA 61.019 68.421 0.00 0.00 0.00 3.71
10 11 2.615773 GAGGGAGGGGTAGGGAGG 59.384 72.222 0.00 0.00 0.00 4.30
11 12 2.615773 GGAGGGAGGGGTAGGGAG 59.384 72.222 0.00 0.00 0.00 4.30
12 13 3.040814 GGGAGGGAGGGGTAGGGA 61.041 72.222 0.00 0.00 0.00 4.20
13 14 3.043404 AGGGAGGGAGGGGTAGGG 61.043 72.222 0.00 0.00 0.00 3.53
14 15 2.021652 AGAGGGAGGGAGGGGTAGG 61.022 68.421 0.00 0.00 0.00 3.18
15 16 1.297409 TGAGAGGGAGGGAGGGGTAG 61.297 65.000 0.00 0.00 0.00 3.18
16 17 0.858598 TTGAGAGGGAGGGAGGGGTA 60.859 60.000 0.00 0.00 0.00 3.69
17 18 2.184631 TTGAGAGGGAGGGAGGGGT 61.185 63.158 0.00 0.00 0.00 4.95
18 19 1.383803 CTTGAGAGGGAGGGAGGGG 60.384 68.421 0.00 0.00 0.00 4.79
19 20 0.043334 TTCTTGAGAGGGAGGGAGGG 59.957 60.000 0.00 0.00 0.00 4.30
20 21 1.557371 GTTTCTTGAGAGGGAGGGAGG 59.443 57.143 0.00 0.00 0.00 4.30
21 22 1.205893 CGTTTCTTGAGAGGGAGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
22 23 1.203137 TCGTTTCTTGAGAGGGAGGGA 60.203 52.381 0.00 0.00 0.00 4.20
23 24 1.205893 CTCGTTTCTTGAGAGGGAGGG 59.794 57.143 0.00 0.00 35.43 4.30
24 25 2.171840 TCTCGTTTCTTGAGAGGGAGG 58.828 52.381 0.00 0.00 37.55 4.30
30 31 6.338146 TCACTTTTTCTCTCGTTTCTTGAGA 58.662 36.000 0.00 0.00 40.07 3.27
31 32 6.256757 ACTCACTTTTTCTCTCGTTTCTTGAG 59.743 38.462 0.00 0.00 34.72 3.02
32 33 6.036083 CACTCACTTTTTCTCTCGTTTCTTGA 59.964 38.462 0.00 0.00 0.00 3.02
33 34 6.036083 TCACTCACTTTTTCTCTCGTTTCTTG 59.964 38.462 0.00 0.00 0.00 3.02
34 35 6.106673 TCACTCACTTTTTCTCTCGTTTCTT 58.893 36.000 0.00 0.00 0.00 2.52
35 36 5.661458 TCACTCACTTTTTCTCTCGTTTCT 58.339 37.500 0.00 0.00 0.00 2.52
36 37 5.520649 ACTCACTCACTTTTTCTCTCGTTTC 59.479 40.000 0.00 0.00 0.00 2.78
37 38 5.420409 ACTCACTCACTTTTTCTCTCGTTT 58.580 37.500 0.00 0.00 0.00 3.60
41 42 6.758886 TCTCAAACTCACTCACTTTTTCTCTC 59.241 38.462 0.00 0.00 0.00 3.20
99 100 1.107114 GCCTGAGAGGACGATCTTGA 58.893 55.000 0.00 0.00 37.67 3.02
100 101 0.103937 GGCCTGAGAGGACGATCTTG 59.896 60.000 0.00 0.00 37.67 3.02
101 102 2.510664 GGCCTGAGAGGACGATCTT 58.489 57.895 0.00 0.00 37.67 2.40
109 538 2.110967 CGTGCATTGGCCTGAGAGG 61.111 63.158 3.32 0.00 40.13 3.69
123 552 1.930825 AAAAATGTTTGCGCCGTGC 59.069 47.368 4.18 0.00 46.70 5.34
139 570 2.811431 CACGAGTGCCACCTCATAAAAA 59.189 45.455 0.00 0.00 0.00 1.94
159 590 2.741759 TACGAATCTGAGCACAAGCA 57.258 45.000 0.00 0.00 45.49 3.91
160 591 4.611943 TCTATACGAATCTGAGCACAAGC 58.388 43.478 0.00 0.00 42.56 4.01
188 619 3.362831 AGCGAACGTATTAGTTGTCGTTG 59.637 43.478 6.53 1.76 44.47 4.10
189 620 3.568538 AGCGAACGTATTAGTTGTCGTT 58.431 40.909 4.22 0.00 46.51 3.85
191 622 2.529090 GGAGCGAACGTATTAGTTGTCG 59.471 50.000 0.00 0.00 34.00 4.35
193 624 2.162208 TCGGAGCGAACGTATTAGTTGT 59.838 45.455 0.00 0.00 34.00 3.32
204 635 4.260497 GGTTTATACCAATTCGGAGCGAAC 60.260 45.833 0.00 0.00 45.12 3.95
207 638 3.872560 GGTTTATACCAATTCGGAGCG 57.127 47.619 0.00 0.00 44.36 5.03
226 657 8.365399 TCAAATGCTATAAATCTAACGTCAGG 57.635 34.615 0.00 0.00 0.00 3.86
234 665 7.073725 AGGGGGAACTCAAATGCTATAAATCTA 59.926 37.037 0.00 0.00 0.00 1.98
308 745 3.801307 ATGGGAAGGTTAAGACGGTTT 57.199 42.857 0.00 0.00 0.00 3.27
321 758 7.727331 TTTGCAAGTCAATAAAAATGGGAAG 57.273 32.000 0.00 0.00 34.12 3.46
322 759 8.688747 ATTTTGCAAGTCAATAAAAATGGGAA 57.311 26.923 0.00 0.00 34.12 3.97
335 772 9.545105 AGAAAACATGATTTATTTTGCAAGTCA 57.455 25.926 0.00 0.00 0.00 3.41
341 778 8.074972 TGCCAAAGAAAACATGATTTATTTTGC 58.925 29.630 24.87 24.87 40.06 3.68
351 788 4.478206 TGGTTTGCCAAAGAAAACATGA 57.522 36.364 0.00 0.00 42.83 3.07
383 821 2.623535 TGATACGCACGCTTATTTGGT 58.376 42.857 0.00 0.00 0.00 3.67
410 848 9.816787 TTTACCTGTTGAAATAAATTCTAGGGT 57.183 29.630 0.00 0.00 38.01 4.34
456 894 8.855110 TGTGATTGTGTAAATTGGTGTTTATCT 58.145 29.630 0.00 0.00 0.00 1.98
465 903 9.251792 CCATATTGATGTGATTGTGTAAATTGG 57.748 33.333 0.00 0.00 0.00 3.16
468 906 9.187996 TGTCCATATTGATGTGATTGTGTAAAT 57.812 29.630 0.00 0.00 0.00 1.40
470 908 7.282901 CCTGTCCATATTGATGTGATTGTGTAA 59.717 37.037 0.00 0.00 0.00 2.41
474 912 4.581824 GCCTGTCCATATTGATGTGATTGT 59.418 41.667 0.00 0.00 0.00 2.71
479 917 3.548770 AGTGCCTGTCCATATTGATGTG 58.451 45.455 0.00 0.00 0.00 3.21
484 922 4.212004 CGTGATTAGTGCCTGTCCATATTG 59.788 45.833 0.00 0.00 0.00 1.90
485 923 4.380531 CGTGATTAGTGCCTGTCCATATT 58.619 43.478 0.00 0.00 0.00 1.28
489 927 0.391130 GCGTGATTAGTGCCTGTCCA 60.391 55.000 0.00 0.00 0.00 4.02
495 933 0.300789 GTTAGCGCGTGATTAGTGCC 59.699 55.000 8.43 0.00 45.35 5.01
497 935 3.925688 AATGTTAGCGCGTGATTAGTG 57.074 42.857 8.43 0.00 0.00 2.74
519 957 5.664294 AGTGCAAATGCCATCTCATAAAA 57.336 34.783 2.46 0.00 41.18 1.52
520 958 5.412640 CAAGTGCAAATGCCATCTCATAAA 58.587 37.500 2.46 0.00 41.18 1.40
522 960 3.181484 GCAAGTGCAAATGCCATCTCATA 60.181 43.478 12.72 0.00 41.18 2.15
523 961 2.418197 GCAAGTGCAAATGCCATCTCAT 60.418 45.455 12.72 0.00 41.18 2.90
525 963 1.636988 GCAAGTGCAAATGCCATCTC 58.363 50.000 12.72 0.00 41.18 2.75
526 964 0.108992 CGCAAGTGCAAATGCCATCT 60.109 50.000 16.73 0.00 42.21 2.90
527 965 1.689352 GCGCAAGTGCAAATGCCATC 61.689 55.000 16.73 5.45 42.21 3.51
528 966 1.738830 GCGCAAGTGCAAATGCCAT 60.739 52.632 16.73 0.00 42.21 4.40
529 967 2.356075 GCGCAAGTGCAAATGCCA 60.356 55.556 16.73 0.00 42.21 4.92
530 968 2.048877 AGCGCAAGTGCAAATGCC 60.049 55.556 11.47 10.83 42.21 4.40
532 970 0.239082 TCTGAGCGCAAGTGCAAATG 59.761 50.000 11.47 0.00 42.21 2.32
533 971 1.171308 ATCTGAGCGCAAGTGCAAAT 58.829 45.000 11.47 0.00 42.21 2.32
535 973 0.518636 GAATCTGAGCGCAAGTGCAA 59.481 50.000 11.47 0.00 42.21 4.08
537 975 1.059994 CGAATCTGAGCGCAAGTGC 59.940 57.895 11.47 0.00 41.68 4.40
538 976 0.094216 CACGAATCTGAGCGCAAGTG 59.906 55.000 11.47 3.74 41.68 3.16
540 978 1.059994 GCACGAATCTGAGCGCAAG 59.940 57.895 11.47 7.03 43.44 4.01
541 979 1.629345 CTGCACGAATCTGAGCGCAA 61.629 55.000 11.47 0.00 0.00 4.85
542 980 2.048316 TGCACGAATCTGAGCGCA 60.048 55.556 11.47 0.00 0.00 6.09
543 981 1.750572 CTCTGCACGAATCTGAGCGC 61.751 60.000 0.00 0.00 0.00 5.92
544 982 1.750572 GCTCTGCACGAATCTGAGCG 61.751 60.000 6.16 1.81 42.59 5.03
546 984 1.937278 ATGCTCTGCACGAATCTGAG 58.063 50.000 0.00 0.00 43.04 3.35
547 985 2.274437 GAATGCTCTGCACGAATCTGA 58.726 47.619 0.00 0.00 43.04 3.27
549 987 1.134995 TCGAATGCTCTGCACGAATCT 60.135 47.619 3.43 0.00 43.04 2.40
550 988 1.005557 GTCGAATGCTCTGCACGAATC 60.006 52.381 6.79 0.00 43.04 2.52
551 989 1.002366 GTCGAATGCTCTGCACGAAT 58.998 50.000 6.79 0.00 43.04 3.34
553 991 0.319469 TTGTCGAATGCTCTGCACGA 60.319 50.000 0.00 0.00 43.04 4.35
554 992 0.179240 GTTGTCGAATGCTCTGCACG 60.179 55.000 0.00 0.00 43.04 5.34
555 993 0.867746 TGTTGTCGAATGCTCTGCAC 59.132 50.000 0.00 0.00 43.04 4.57
556 994 1.150827 CTGTTGTCGAATGCTCTGCA 58.849 50.000 0.00 0.00 44.86 4.41
557 995 0.179205 GCTGTTGTCGAATGCTCTGC 60.179 55.000 0.00 0.00 0.00 4.26
558 996 1.436600 AGCTGTTGTCGAATGCTCTG 58.563 50.000 0.00 0.00 0.00 3.35
559 997 3.319137 TTAGCTGTTGTCGAATGCTCT 57.681 42.857 0.00 0.00 35.47 4.09
560 998 4.317418 CGTATTAGCTGTTGTCGAATGCTC 60.317 45.833 0.00 0.00 35.47 4.26
561 999 3.551890 CGTATTAGCTGTTGTCGAATGCT 59.448 43.478 0.00 0.00 37.72 3.79
562 1000 3.306166 ACGTATTAGCTGTTGTCGAATGC 59.694 43.478 0.00 0.00 0.00 3.56
563 1001 5.742453 AGTACGTATTAGCTGTTGTCGAATG 59.258 40.000 0.00 0.00 0.00 2.67
564 1002 5.888105 AGTACGTATTAGCTGTTGTCGAAT 58.112 37.500 0.00 0.00 0.00 3.34
565 1003 5.122869 AGAGTACGTATTAGCTGTTGTCGAA 59.877 40.000 0.00 0.00 0.00 3.71
566 1004 4.633126 AGAGTACGTATTAGCTGTTGTCGA 59.367 41.667 0.00 0.00 0.00 4.20
567 1005 4.906423 AGAGTACGTATTAGCTGTTGTCG 58.094 43.478 0.00 0.00 0.00 4.35
571 1009 5.808042 TTCGAGAGTACGTATTAGCTGTT 57.192 39.130 0.00 0.00 34.70 3.16
572 1010 6.200100 CAATTCGAGAGTACGTATTAGCTGT 58.800 40.000 0.00 0.00 33.16 4.40
575 1013 5.213675 AGCAATTCGAGAGTACGTATTAGC 58.786 41.667 0.00 0.00 33.16 3.09
577 1015 9.817365 GTTATAGCAATTCGAGAGTACGTATTA 57.183 33.333 0.00 0.00 33.16 0.98
578 1016 8.347771 TGTTATAGCAATTCGAGAGTACGTATT 58.652 33.333 0.00 0.00 34.65 1.89
579 1017 7.868775 TGTTATAGCAATTCGAGAGTACGTAT 58.131 34.615 0.00 0.00 34.70 3.06
580 1018 7.250445 TGTTATAGCAATTCGAGAGTACGTA 57.750 36.000 0.00 0.00 34.70 3.57
581 1019 6.127810 TGTTATAGCAATTCGAGAGTACGT 57.872 37.500 0.00 0.00 34.70 3.57
582 1020 7.624706 AATGTTATAGCAATTCGAGAGTACG 57.375 36.000 0.00 0.00 0.00 3.67
583 1021 9.031360 TCAAATGTTATAGCAATTCGAGAGTAC 57.969 33.333 0.00 0.00 0.00 2.73
584 1022 9.249457 CTCAAATGTTATAGCAATTCGAGAGTA 57.751 33.333 0.00 0.00 0.00 2.59
585 1023 7.254590 GCTCAAATGTTATAGCAATTCGAGAGT 60.255 37.037 14.79 0.00 35.05 3.24
586 1024 7.042187 AGCTCAAATGTTATAGCAATTCGAGAG 60.042 37.037 14.79 8.68 37.44 3.20
588 1026 6.952743 AGCTCAAATGTTATAGCAATTCGAG 58.047 36.000 0.00 3.65 37.44 4.04
589 1027 6.017934 GGAGCTCAAATGTTATAGCAATTCGA 60.018 38.462 17.19 0.00 37.44 3.71
590 1028 6.138761 GGAGCTCAAATGTTATAGCAATTCG 58.861 40.000 17.19 0.00 37.44 3.34
591 1029 6.442112 GGGAGCTCAAATGTTATAGCAATTC 58.558 40.000 17.19 0.00 37.44 2.17
592 1030 5.302823 GGGGAGCTCAAATGTTATAGCAATT 59.697 40.000 17.19 0.00 37.44 2.32
593 1031 4.829492 GGGGAGCTCAAATGTTATAGCAAT 59.171 41.667 17.19 0.00 37.44 3.56
594 1032 4.207165 GGGGAGCTCAAATGTTATAGCAA 58.793 43.478 17.19 0.00 37.44 3.91
596 1034 3.149981 GGGGGAGCTCAAATGTTATAGC 58.850 50.000 17.19 0.00 35.16 2.97
597 1035 4.713792 AGGGGGAGCTCAAATGTTATAG 57.286 45.455 17.19 0.00 0.00 1.31
600 1038 3.825908 AAAGGGGGAGCTCAAATGTTA 57.174 42.857 17.19 0.00 0.00 2.41
602 1040 2.702270 AAAAGGGGGAGCTCAAATGT 57.298 45.000 17.19 0.00 0.00 2.71
603 1041 4.202050 CGAATAAAAGGGGGAGCTCAAATG 60.202 45.833 17.19 0.00 0.00 2.32
604 1042 3.954258 CGAATAAAAGGGGGAGCTCAAAT 59.046 43.478 17.19 0.00 0.00 2.32
605 1043 3.245122 ACGAATAAAAGGGGGAGCTCAAA 60.245 43.478 17.19 0.00 0.00 2.69
606 1044 2.307686 ACGAATAAAAGGGGGAGCTCAA 59.692 45.455 17.19 0.00 0.00 3.02
607 1045 1.913419 ACGAATAAAAGGGGGAGCTCA 59.087 47.619 17.19 0.00 0.00 4.26
608 1046 2.711978 ACGAATAAAAGGGGGAGCTC 57.288 50.000 4.71 4.71 0.00 4.09
609 1047 3.451402 AAACGAATAAAAGGGGGAGCT 57.549 42.857 0.00 0.00 0.00 4.09
610 1048 3.508402 TGAAAACGAATAAAAGGGGGAGC 59.492 43.478 0.00 0.00 0.00 4.70
612 1050 6.014012 AGAATGAAAACGAATAAAAGGGGGA 58.986 36.000 0.00 0.00 0.00 4.81
614 1052 8.903820 AGATAGAATGAAAACGAATAAAAGGGG 58.096 33.333 0.00 0.00 0.00 4.79
621 1059 9.667107 AAACCAGAGATAGAATGAAAACGAATA 57.333 29.630 0.00 0.00 0.00 1.75
622 1060 8.567285 AAACCAGAGATAGAATGAAAACGAAT 57.433 30.769 0.00 0.00 0.00 3.34
624 1062 7.979444 AAAACCAGAGATAGAATGAAAACGA 57.021 32.000 0.00 0.00 0.00 3.85
658 1096 9.571810 GAAAGGTTAAGACGGTTTTTAAGAAAA 57.428 29.630 0.00 0.00 32.53 2.29
659 1097 8.190122 GGAAAGGTTAAGACGGTTTTTAAGAAA 58.810 33.333 0.00 0.00 0.00 2.52
660 1098 7.338957 TGGAAAGGTTAAGACGGTTTTTAAGAA 59.661 33.333 0.00 0.00 0.00 2.52
661 1099 6.827762 TGGAAAGGTTAAGACGGTTTTTAAGA 59.172 34.615 0.00 0.00 0.00 2.10
662 1100 7.030075 TGGAAAGGTTAAGACGGTTTTTAAG 57.970 36.000 0.00 0.00 0.00 1.85
663 1101 7.585579 ATGGAAAGGTTAAGACGGTTTTTAA 57.414 32.000 0.00 0.00 0.00 1.52
665 1103 6.474140 AATGGAAAGGTTAAGACGGTTTTT 57.526 33.333 0.00 0.00 0.00 1.94
666 1104 6.474140 AAATGGAAAGGTTAAGACGGTTTT 57.526 33.333 0.00 0.00 0.00 2.43
667 1105 6.474140 AAAATGGAAAGGTTAAGACGGTTT 57.526 33.333 0.00 0.00 0.00 3.27
668 1106 6.474140 AAAAATGGAAAGGTTAAGACGGTT 57.526 33.333 0.00 0.00 0.00 4.44
669 1107 7.770366 ATAAAAATGGAAAGGTTAAGACGGT 57.230 32.000 0.00 0.00 0.00 4.83
670 1108 8.301002 TCAATAAAAATGGAAAGGTTAAGACGG 58.699 33.333 0.00 0.00 0.00 4.79
671 1109 9.124807 GTCAATAAAAATGGAAAGGTTAAGACG 57.875 33.333 0.00 0.00 0.00 4.18
675 1113 9.267084 GCAAGTCAATAAAAATGGAAAGGTTAA 57.733 29.630 0.00 0.00 0.00 2.01
676 1114 7.875554 GGCAAGTCAATAAAAATGGAAAGGTTA 59.124 33.333 0.00 0.00 0.00 2.85
677 1115 6.710295 GGCAAGTCAATAAAAATGGAAAGGTT 59.290 34.615 0.00 0.00 0.00 3.50
678 1116 6.183361 TGGCAAGTCAATAAAAATGGAAAGGT 60.183 34.615 0.00 0.00 0.00 3.50
679 1117 6.229733 TGGCAAGTCAATAAAAATGGAAAGG 58.770 36.000 0.00 0.00 0.00 3.11
680 1118 7.727331 TTGGCAAGTCAATAAAAATGGAAAG 57.273 32.000 0.00 0.00 0.00 2.62
681 1119 8.688747 ATTTGGCAAGTCAATAAAAATGGAAA 57.311 26.923 0.00 0.00 0.00 3.13
682 1120 9.784531 TTATTTGGCAAGTCAATAAAAATGGAA 57.215 25.926 0.00 0.00 0.00 3.53
683 1121 9.784531 TTTATTTGGCAAGTCAATAAAAATGGA 57.215 25.926 10.76 0.00 0.00 3.41
729 1168 8.308207 ACGTTTATTTGGTAAGCATTTATTGGT 58.692 29.630 0.00 0.00 37.77 3.67
734 1173 5.795939 CGCACGTTTATTTGGTAAGCATTTA 59.204 36.000 0.00 0.00 0.00 1.40
737 1176 3.189702 ACGCACGTTTATTTGGTAAGCAT 59.810 39.130 0.00 0.00 0.00 3.79
753 1192 2.031508 AGGGTTTTGTTTGATACGCACG 60.032 45.455 0.00 0.00 0.00 5.34
755 1194 4.643463 TCTAGGGTTTTGTTTGATACGCA 58.357 39.130 0.00 0.00 0.00 5.24
756 1195 5.616488 TTCTAGGGTTTTGTTTGATACGC 57.384 39.130 0.00 0.00 0.00 4.42
766 1206 7.385778 TGTCGGAATAAATTCTAGGGTTTTG 57.614 36.000 2.91 0.00 37.00 2.44
770 1210 4.720273 ACCTGTCGGAATAAATTCTAGGGT 59.280 41.667 14.35 8.96 37.00 4.34
826 1311 0.975887 ATTTTTGGATGCTTGGCGGT 59.024 45.000 0.00 0.00 0.00 5.68
834 1319 3.306703 CGGCATGTTGTATTTTTGGATGC 59.693 43.478 0.00 0.00 35.14 3.91
837 1322 4.038042 TGTTCGGCATGTTGTATTTTTGGA 59.962 37.500 0.00 0.00 0.00 3.53
849 1334 0.317770 CGTTTTGCTGTTCGGCATGT 60.318 50.000 7.15 0.00 42.09 3.21
853 1338 2.025441 TGCGTTTTGCTGTTCGGC 59.975 55.556 0.00 0.00 46.63 5.54
854 1339 1.657181 GGTGCGTTTTGCTGTTCGG 60.657 57.895 0.00 0.00 46.63 4.30
855 1340 0.657368 GAGGTGCGTTTTGCTGTTCG 60.657 55.000 0.00 0.00 46.63 3.95
856 1341 0.317854 GGAGGTGCGTTTTGCTGTTC 60.318 55.000 0.00 0.00 46.63 3.18
857 1342 1.733526 GGAGGTGCGTTTTGCTGTT 59.266 52.632 0.00 0.00 46.63 3.16
859 1344 1.526575 ATGGGAGGTGCGTTTTGCTG 61.527 55.000 0.00 0.00 46.63 4.41
861 1346 0.388520 GAATGGGAGGTGCGTTTTGC 60.389 55.000 0.00 0.00 46.70 3.68
862 1347 1.247567 AGAATGGGAGGTGCGTTTTG 58.752 50.000 0.00 0.00 0.00 2.44
863 1348 1.995376 AAGAATGGGAGGTGCGTTTT 58.005 45.000 0.00 0.00 0.00 2.43
868 1398 1.480954 TCGTCTAAGAATGGGAGGTGC 59.519 52.381 0.00 0.00 0.00 5.01
887 1417 0.927537 GGTGCGTTTGTTGGCTTTTC 59.072 50.000 0.00 0.00 0.00 2.29
900 1430 1.603455 CCAAACATGGGAGGTGCGT 60.603 57.895 0.00 0.00 0.00 5.24
901 1431 3.277133 CCAAACATGGGAGGTGCG 58.723 61.111 0.00 0.00 0.00 5.34
909 1439 1.256812 GAGTGGGTTCCCAAACATGG 58.743 55.000 12.54 0.00 37.91 3.66
910 1440 0.881118 CGAGTGGGTTCCCAAACATG 59.119 55.000 12.54 0.00 37.91 3.21
912 1442 1.527380 GCGAGTGGGTTCCCAAACA 60.527 57.895 12.54 0.00 37.91 2.83
913 1443 1.228154 AGCGAGTGGGTTCCCAAAC 60.228 57.895 12.54 8.51 37.91 2.93
914 1444 1.072505 GAGCGAGTGGGTTCCCAAA 59.927 57.895 12.54 0.00 37.91 3.28
915 1445 2.747686 GAGCGAGTGGGTTCCCAA 59.252 61.111 12.54 0.00 37.91 4.12
916 1446 3.319198 GGAGCGAGTGGGTTCCCA 61.319 66.667 6.46 6.46 31.70 4.37
918 1448 3.003763 AGGGAGCGAGTGGGTTCC 61.004 66.667 0.00 0.00 42.62 3.62
919 1449 2.579738 GAGGGAGCGAGTGGGTTC 59.420 66.667 0.00 0.00 0.00 3.62
920 1450 3.003763 GGAGGGAGCGAGTGGGTT 61.004 66.667 0.00 0.00 0.00 4.11
939 1484 3.705072 GGGAATAGAAAGAGGAAGACGGA 59.295 47.826 0.00 0.00 0.00 4.69
941 1486 4.160626 AGTGGGAATAGAAAGAGGAAGACG 59.839 45.833 0.00 0.00 0.00 4.18
942 1487 5.395879 GGAGTGGGAATAGAAAGAGGAAGAC 60.396 48.000 0.00 0.00 0.00 3.01
978 1525 2.446994 TGGGTTGGTGACGGACCT 60.447 61.111 7.34 0.00 46.32 3.85
980 1527 1.004918 CTCTGGGTTGGTGACGGAC 60.005 63.158 0.00 0.00 0.00 4.79
981 1528 2.879233 GCTCTGGGTTGGTGACGGA 61.879 63.158 0.00 0.00 0.00 4.69
982 1529 2.358737 GCTCTGGGTTGGTGACGG 60.359 66.667 0.00 0.00 0.00 4.79
984 1531 1.600916 GGTGCTCTGGGTTGGTGAC 60.601 63.158 0.00 0.00 0.00 3.67
985 1532 2.075566 TGGTGCTCTGGGTTGGTGA 61.076 57.895 0.00 0.00 0.00 4.02
986 1533 1.898574 GTGGTGCTCTGGGTTGGTG 60.899 63.158 0.00 0.00 0.00 4.17
987 1534 2.515901 GTGGTGCTCTGGGTTGGT 59.484 61.111 0.00 0.00 0.00 3.67
995 1546 2.594592 GGCGTTTGGTGGTGCTCT 60.595 61.111 0.00 0.00 0.00 4.09
1760 2647 4.521062 CTCGGCTTCGGCTCCCAG 62.521 72.222 0.00 0.00 41.44 4.45
1790 2677 0.549902 TGGGGATCAGCTTCCTCCAA 60.550 55.000 10.57 0.00 35.16 3.53
1844 2731 2.113243 AACTTGACAGGGAGCCGGAC 62.113 60.000 5.05 0.00 0.00 4.79
1847 2734 0.035458 AAGAACTTGACAGGGAGCCG 59.965 55.000 0.00 0.00 0.00 5.52
2002 4804 2.518587 ATGAGTCCCGCGATCCGA 60.519 61.111 8.23 0.00 40.02 4.55
2003 4805 2.049985 GATGAGTCCCGCGATCCG 60.050 66.667 8.23 0.00 0.00 4.18
2004 4806 2.049985 CGATGAGTCCCGCGATCC 60.050 66.667 8.23 0.00 0.00 3.36
2005 4807 2.049985 CCGATGAGTCCCGCGATC 60.050 66.667 8.23 0.00 0.00 3.69
2006 4808 3.606662 CCCGATGAGTCCCGCGAT 61.607 66.667 8.23 0.00 0.00 4.58
2011 4813 3.551407 GAGGGCCCGATGAGTCCC 61.551 72.222 18.44 0.00 39.05 4.46
2043 4845 0.587242 CGCGATTTGATGCCGTCAAG 60.587 55.000 0.00 0.00 46.85 3.02
2052 4854 0.855349 GATGAGTCGCGCGATTTGAT 59.145 50.000 37.03 25.22 0.00 2.57
2123 4982 0.100861 GGAGAGGACACGACGAATCC 59.899 60.000 0.00 7.98 0.00 3.01
2133 4992 3.733960 CGTGTCGCGGAGAGGACA 61.734 66.667 6.13 0.00 40.63 4.02
2218 5122 0.693049 CACAGCTACCAAGGGGAACT 59.307 55.000 0.00 0.00 38.05 3.01
2308 5212 3.741476 GAAGCCAGCCAACCAGCG 61.741 66.667 0.00 0.00 38.01 5.18
2320 5227 2.817423 CGCCGCAATCTCTGAAGCC 61.817 63.158 0.00 0.00 0.00 4.35
2324 5231 3.074369 TCCCGCCGCAATCTCTGA 61.074 61.111 0.00 0.00 0.00 3.27
2350 5257 1.133790 AGGTTCCTACGTGCGTACATC 59.866 52.381 4.09 0.00 0.00 3.06
2352 5259 0.523072 GAGGTTCCTACGTGCGTACA 59.477 55.000 4.09 0.00 0.00 2.90
2354 5261 1.315257 GGGAGGTTCCTACGTGCGTA 61.315 60.000 0.00 4.35 36.57 4.42
2358 5265 0.384669 GATCGGGAGGTTCCTACGTG 59.615 60.000 0.00 1.76 36.57 4.49
2359 5266 0.754587 GGATCGGGAGGTTCCTACGT 60.755 60.000 12.64 0.00 36.57 3.57
2360 5267 1.461911 GGGATCGGGAGGTTCCTACG 61.462 65.000 8.47 8.47 36.57 3.51
2361 5268 0.105607 AGGGATCGGGAGGTTCCTAC 60.106 60.000 0.00 0.00 36.57 3.18
2362 5269 0.187851 GAGGGATCGGGAGGTTCCTA 59.812 60.000 0.00 0.00 36.57 2.94
2367 5318 3.364964 TGGGAGGGATCGGGAGGT 61.365 66.667 0.00 0.00 0.00 3.85
2394 5345 5.122396 GGCCACTCACTCACTAATTTACTTG 59.878 44.000 0.00 0.00 0.00 3.16
2415 5366 1.474077 CACTCCTGCTGTTTAATGGCC 59.526 52.381 0.00 0.00 0.00 5.36
2517 5479 0.462581 TGGACGATGAATGCCAGAGC 60.463 55.000 0.00 0.00 40.48 4.09
2532 5515 1.079503 GATCGGCACAAGAACTGGAC 58.920 55.000 0.00 0.00 0.00 4.02
2659 5645 2.904866 TGCACTGAACCGGTTGGC 60.905 61.111 27.87 21.66 39.70 4.52
2665 5651 1.642037 CCATCTGCTGCACTGAACCG 61.642 60.000 0.00 0.00 0.00 4.44
2674 5660 2.104331 GCATGTGCCATCTGCTGC 59.896 61.111 0.00 0.00 42.00 5.25
2697 5683 1.296056 CCGTTGGTCGTGTTGGGATC 61.296 60.000 0.00 0.00 37.94 3.36
2699 5685 1.969200 TTCCGTTGGTCGTGTTGGGA 61.969 55.000 0.00 0.00 37.94 4.37
2731 5717 0.940126 GTCCATATGGAGTGCAAGCG 59.060 55.000 25.17 0.00 46.49 4.68
2732 5718 1.945394 CTGTCCATATGGAGTGCAAGC 59.055 52.381 25.17 11.62 46.49 4.01
2733 5719 3.201290 GTCTGTCCATATGGAGTGCAAG 58.799 50.000 25.17 16.03 46.49 4.01
2734 5720 2.571202 TGTCTGTCCATATGGAGTGCAA 59.429 45.455 25.17 8.36 46.49 4.08
2735 5721 2.187100 TGTCTGTCCATATGGAGTGCA 58.813 47.619 25.17 17.55 46.49 4.57
2736 5722 2.988010 TGTCTGTCCATATGGAGTGC 57.012 50.000 25.17 13.80 46.49 4.40
2737 5723 3.624861 GCTTTGTCTGTCCATATGGAGTG 59.375 47.826 25.17 18.99 46.49 3.51
2739 5725 3.624861 GTGCTTTGTCTGTCCATATGGAG 59.375 47.826 25.17 14.27 46.49 3.86
2740 5726 3.008923 TGTGCTTTGTCTGTCCATATGGA 59.991 43.478 20.98 20.98 43.08 3.41
2741 5727 3.346315 TGTGCTTTGTCTGTCCATATGG 58.654 45.455 16.25 16.25 0.00 2.74
2742 5728 4.673580 GCTTGTGCTTTGTCTGTCCATATG 60.674 45.833 0.00 0.00 36.03 1.78
2744 5730 2.813754 GCTTGTGCTTTGTCTGTCCATA 59.186 45.455 0.00 0.00 36.03 2.74
2746 5732 1.024271 GCTTGTGCTTTGTCTGTCCA 58.976 50.000 0.00 0.00 36.03 4.02
2843 6032 1.079057 GAGAAGGAGAACGGGGCAC 60.079 63.158 0.00 0.00 0.00 5.01
2844 6033 2.291043 GGAGAAGGAGAACGGGGCA 61.291 63.158 0.00 0.00 0.00 5.36
2850 6039 0.983905 GGGGGAGGGAGAAGGAGAAC 60.984 65.000 0.00 0.00 0.00 3.01
2917 6106 2.427575 CGAGACGCGATCCATCCG 60.428 66.667 15.93 1.55 44.57 4.18
2928 6120 0.860618 GGAACGGACGATTCGAGACG 60.861 60.000 13.95 15.09 0.00 4.18
2952 6144 1.767759 AATCTGCGCCTTGCCTTTAT 58.232 45.000 4.18 0.00 45.60 1.40
2957 6149 3.708563 TTTATTAATCTGCGCCTTGCC 57.291 42.857 4.18 0.00 45.60 4.52
2964 6156 6.156932 TGCTGATCGATTTATTAATCTGCG 57.843 37.500 0.00 0.00 42.54 5.18
2967 6159 7.118971 GGAAGCTGCTGATCGATTTATTAATCT 59.881 37.037 1.35 0.00 38.40 2.40
2971 6163 5.610398 TGGAAGCTGCTGATCGATTTATTA 58.390 37.500 1.35 0.00 0.00 0.98
2972 6164 4.454678 TGGAAGCTGCTGATCGATTTATT 58.545 39.130 1.35 0.00 0.00 1.40
2975 6167 2.408271 TGGAAGCTGCTGATCGATTT 57.592 45.000 1.35 0.00 0.00 2.17
2976 6168 2.634815 ATGGAAGCTGCTGATCGATT 57.365 45.000 1.35 0.00 0.00 3.34
2977 6169 2.617308 CAAATGGAAGCTGCTGATCGAT 59.383 45.455 1.35 0.00 0.00 3.59
2980 6172 2.372264 TCCAAATGGAAGCTGCTGATC 58.628 47.619 1.35 0.00 42.18 2.92
2981 6173 2.519771 TCCAAATGGAAGCTGCTGAT 57.480 45.000 1.35 0.00 42.18 2.90
2987 6179 3.004880 TGGACCGTCCAAATGGAAGCT 62.005 52.381 18.34 0.00 45.00 3.74
3010 6202 2.249413 AATCGGAGCTGCTGGACTGG 62.249 60.000 7.01 0.00 0.00 4.00
3011 6203 0.809241 GAATCGGAGCTGCTGGACTG 60.809 60.000 7.01 0.00 0.00 3.51
3012 6204 1.519719 GAATCGGAGCTGCTGGACT 59.480 57.895 7.01 0.00 0.00 3.85
3013 6205 1.880340 CGAATCGGAGCTGCTGGAC 60.880 63.158 7.01 0.00 0.00 4.02
3014 6206 1.888436 AACGAATCGGAGCTGCTGGA 61.888 55.000 7.01 4.47 0.00 3.86
3015 6207 1.424493 GAACGAATCGGAGCTGCTGG 61.424 60.000 7.01 0.00 0.00 4.85
3016 6208 2.002127 GAACGAATCGGAGCTGCTG 58.998 57.895 7.01 0.00 0.00 4.41
3017 6209 4.504132 GAACGAATCGGAGCTGCT 57.496 55.556 7.80 0.00 0.00 4.24
3059 6251 4.416738 GACAGCCACCTCCCCTGC 62.417 72.222 0.00 0.00 0.00 4.85
3060 6252 2.930019 TGACAGCCACCTCCCCTG 60.930 66.667 0.00 0.00 0.00 4.45
3067 6259 1.483827 TGATCTCATCTGACAGCCACC 59.516 52.381 0.00 0.00 0.00 4.61
3100 6292 1.434555 CATAAACAACGCCGTGGAGA 58.565 50.000 0.00 0.00 0.00 3.71
3107 6299 2.202557 GCCGGCATAAACAACGCC 60.203 61.111 24.80 0.00 42.64 5.68
3108 6300 2.202557 GGCCGGCATAAACAACGC 60.203 61.111 30.85 1.84 0.00 4.84
3109 6301 0.039074 TTTGGCCGGCATAAACAACG 60.039 50.000 30.85 0.00 0.00 4.10
3110 6302 1.000394 ACTTTGGCCGGCATAAACAAC 60.000 47.619 30.85 8.62 0.00 3.32
3112 6304 0.885196 GACTTTGGCCGGCATAAACA 59.115 50.000 30.85 14.13 0.00 2.83
3113 6305 1.132453 GAGACTTTGGCCGGCATAAAC 59.868 52.381 30.85 16.52 0.00 2.01
3114 6306 1.459450 GAGACTTTGGCCGGCATAAA 58.541 50.000 30.85 25.46 0.00 1.40
3115 6307 0.742990 CGAGACTTTGGCCGGCATAA 60.743 55.000 30.85 20.00 0.00 1.90
3116 6308 1.153449 CGAGACTTTGGCCGGCATA 60.153 57.895 30.85 14.39 0.00 3.14
3117 6309 2.436646 CGAGACTTTGGCCGGCAT 60.437 61.111 30.85 7.51 0.00 4.40
3119 6311 3.659089 TAGCGAGACTTTGGCCGGC 62.659 63.158 21.18 21.18 0.00 6.13
3120 6312 1.810030 GTAGCGAGACTTTGGCCGG 60.810 63.158 0.00 0.00 0.00 6.13
3124 6421 0.460311 ATCGGGTAGCGAGACTTTGG 59.540 55.000 0.00 0.00 0.00 3.28
3135 6432 2.159382 ACCAGCACAAAAATCGGGTAG 58.841 47.619 0.00 0.00 0.00 3.18
3136 6433 2.279935 ACCAGCACAAAAATCGGGTA 57.720 45.000 0.00 0.00 0.00 3.69
3137 6434 1.408969 AACCAGCACAAAAATCGGGT 58.591 45.000 0.00 0.00 0.00 5.28
3178 6475 0.240145 GAGTTTTTGGCCGGTGTAGC 59.760 55.000 1.90 0.00 0.00 3.58
3182 6479 0.750249 AAAGGAGTTTTTGGCCGGTG 59.250 50.000 1.90 0.00 0.00 4.94
3197 6494 4.215399 TGGCGATGAGTTTTGTAGAAAAGG 59.785 41.667 0.00 0.00 31.57 3.11
3210 6507 0.250513 GACCCTCTTTGGCGATGAGT 59.749 55.000 14.58 0.62 0.00 3.41
3221 6518 2.037385 AGAAGCTCCAAGACCCTCTT 57.963 50.000 0.00 0.00 37.14 2.85
3225 6522 0.608640 TCGAAGAAGCTCCAAGACCC 59.391 55.000 0.00 0.00 0.00 4.46
3232 6529 1.469423 CCGGTTACTCGAAGAAGCTCC 60.469 57.143 0.00 0.00 34.09 4.70
3242 6539 2.813908 GCACCAGCCGGTTACTCG 60.814 66.667 1.90 0.00 46.31 4.18
3250 6547 1.851021 TTGAATTCGTGCACCAGCCG 61.851 55.000 12.15 0.00 41.13 5.52
3253 6550 3.705604 AGTTTTTGAATTCGTGCACCAG 58.294 40.909 12.15 0.00 0.00 4.00
3289 6586 2.230940 CGGATAGCGAACCAGCACG 61.231 63.158 0.00 0.00 40.15 5.34
3299 6596 3.079578 TCCTATACTCCAACGGATAGCG 58.920 50.000 0.00 0.00 0.00 4.26
3319 6616 6.565234 TCGAAGTATGGAAGAAAGTCAGATC 58.435 40.000 0.00 0.00 0.00 2.75
3320 6617 6.531503 TCGAAGTATGGAAGAAAGTCAGAT 57.468 37.500 0.00 0.00 0.00 2.90
3323 6620 7.979444 AATTTCGAAGTATGGAAGAAAGTCA 57.021 32.000 0.00 0.00 34.82 3.41
3335 6632 6.534079 CCAGTTACTCGGAAATTTCGAAGTAT 59.466 38.462 22.05 12.14 36.15 2.12
3345 6642 0.107848 CCGGCCAGTTACTCGGAAAT 60.108 55.000 2.24 0.00 44.69 2.17
3349 6646 2.125673 CACCGGCCAGTTACTCGG 60.126 66.667 0.00 9.05 46.95 4.63
3350 6647 2.813908 GCACCGGCCAGTTACTCG 60.814 66.667 0.00 0.00 0.00 4.18
3351 6648 1.078426 ATGCACCGGCCAGTTACTC 60.078 57.895 0.00 0.00 40.13 2.59
3362 6659 4.637483 ACCTTATTGAATTCATGCACCG 57.363 40.909 9.40 0.00 0.00 4.94
3371 6668 6.326583 TCACTCCTCGGATACCTTATTGAATT 59.673 38.462 0.00 0.00 0.00 2.17
3378 6675 4.202223 GCAATTCACTCCTCGGATACCTTA 60.202 45.833 0.00 0.00 0.00 2.69
3386 6683 3.641437 TTTTTGCAATTCACTCCTCGG 57.359 42.857 0.00 0.00 0.00 4.63
3403 6700 7.309770 TGAAGCCCTAAATATGGTTGTTTTT 57.690 32.000 0.00 0.00 0.00 1.94
3404 6701 6.926630 TGAAGCCCTAAATATGGTTGTTTT 57.073 33.333 0.00 0.00 0.00 2.43
3405 6702 6.897413 AGATGAAGCCCTAAATATGGTTGTTT 59.103 34.615 0.00 0.00 0.00 2.83
3406 6703 6.322201 CAGATGAAGCCCTAAATATGGTTGTT 59.678 38.462 0.00 0.00 0.00 2.83
3407 6704 5.829924 CAGATGAAGCCCTAAATATGGTTGT 59.170 40.000 0.00 0.00 0.00 3.32
3408 6705 5.278660 GCAGATGAAGCCCTAAATATGGTTG 60.279 44.000 0.00 0.00 0.00 3.77
3409 6706 4.829492 GCAGATGAAGCCCTAAATATGGTT 59.171 41.667 0.00 0.00 0.00 3.67
3410 6707 4.401925 GCAGATGAAGCCCTAAATATGGT 58.598 43.478 0.00 0.00 0.00 3.55
3411 6708 3.438087 CGCAGATGAAGCCCTAAATATGG 59.562 47.826 0.00 0.00 0.00 2.74
3412 6709 3.438087 CCGCAGATGAAGCCCTAAATATG 59.562 47.826 0.00 0.00 0.00 1.78
3413 6710 3.327757 TCCGCAGATGAAGCCCTAAATAT 59.672 43.478 0.00 0.00 0.00 1.28
3414 6711 2.703536 TCCGCAGATGAAGCCCTAAATA 59.296 45.455 0.00 0.00 0.00 1.40
3415 6712 1.490490 TCCGCAGATGAAGCCCTAAAT 59.510 47.619 0.00 0.00 0.00 1.40
3416 6713 0.908910 TCCGCAGATGAAGCCCTAAA 59.091 50.000 0.00 0.00 0.00 1.85
3417 6714 0.908910 TTCCGCAGATGAAGCCCTAA 59.091 50.000 0.00 0.00 0.00 2.69
3418 6715 0.908910 TTTCCGCAGATGAAGCCCTA 59.091 50.000 0.00 0.00 0.00 3.53
3419 6716 0.038166 TTTTCCGCAGATGAAGCCCT 59.962 50.000 0.00 0.00 0.00 5.19
3420 6717 2.566824 TTTTCCGCAGATGAAGCCC 58.433 52.632 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.