>input_sequence_51561
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------------------------------ACCACCAAACGCCGGACCCGGACGCGGAGGCAGGCGGAGGCC--------
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----------------------------------------------------------------------------CGGC
GCGCCGGTCGGCCCCCTTCCATGCTCGCCGGCGCCGGCCGCCGCTGATGCCCAGCCCGCCCAAGGACCGCCCCGCCGGCC
GCCTCGGCCGCCTCATCTCCGCGCTCCGCCCCGCGCGCGCCGGCCCCCTCCCCGTCCAGACCGGCTTCCCCACCTCCCTC
GCCGACCTCTTCGTCAAGAACCATGGCCGCCTCAAGAAGCAGGGC---CCCTCCTCCGGCAGGCGCAAGAGGCGCGGCGC
CCCCCCTTTGCCTTCCTCCGAGCCCTCTCCCCCGCCTCCCTCTCCTCCACC---------CCCGCCGGCCGCCGTCTGCC
CGCCGTCGGCCCAGCCAAGGCCCGACCTTCCGCGGGCGGAGCCCGTCCGCCGCCCCGGAGGCGGGGCCGCCGGCCTCGGA
TTGGGGTTCCTCGCGCTCGTCGGCGTGGCGTCCCTCGCCCTCCTCGTGATCTGGAGCAGGAAGGTGGTTGCGGCCGTCAC
CGTCGCCGCCTTCTCGCTCTTCCTGCTGGAATCCGTCAGGGCGTCCTCGCTTCGCCGGCGGCCCCGGCCCCCGGCGCCCA
CCGCGGAGCTGGATATCGACGACGGCCGCGGCTACGTCTCGCCGATCCGGGAGCTGGCGGGGGAGCCGGAGCCGCTGGGA
TCGAGCTTCTCCGACTCCGGCAGGGGGATCAGCGCCTCCATCCTCGGCATTGACGAGAGGAGCGAGGCCGGCGAGGATTC
GTGCGTCTGGGAGCCGAAGCCGAGGAAGAGGTCGCCTTGGAGGAAGCTGATCCCCAGGAAATTGCAGAGAGGCCGGAAGA
TTGGCAAGGAGTCCGGCTCCCTGTCAAGTTCTTTCCGGTCAAG-------------------------------------
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--------------------------------CTCTTTCCGCAGCGAGGTCAGCGTAGCGGACTCCACGCTCGGCGACAA
TGCCG------GGGCGACGGATCCCCCGGACTCTCGCCGCGGCAGACGCAGCCAAGCGAACGCCAAGGCGGAGGCCGCTG
CCATCGGATCGCGGGACTCATCGGGCCCTCTCCGCCTTGGCATGCTTGACGGCA--------------------------
-------------------------------TCAAATCGCGCGACTCATCGGGCCCTCTCCGCGGCATGGGTGACGGCGC
GGACGCCGCCACCAAATCGCCGGATTCGTCGTGTCCTCTCCGCGACACGGGCAACGGCG---------------GTGCGC
GTGCGCCGATGGGAA------------------TCGCCGGGGCGGACGGCGTAGGGG------GAGGG------GGAGGC
CAGTTCCCCTTGGTAGCTGTGACCGTGGTCGTCCTCGTCGGCCTGGCCGCCGGGAGGGTCCCGGCCGTGGCGCTCACCGT
GCTTTGGTCCGCGCTGGTTGGC---TGGCTTCAGAGATTGCGGCGGGACGGCGATGGATGTACGCACGT-----------
---------------------------------AGGAACCTCCCGATCCCTCCCAGGGTTGATGCAAGTAAATTAGTGAG
TGAGTGGCCATTAAACAGCAGGAGTGAG----C-----------------------------------------------
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---------------
>chr4A_1_TraesCS4A01G296500
TCTCTCCCTTCCTCCCTACCCCTCCCTCCCTCTCAAGAAACGAGAGAAAAAGTGAGTGAGTTTGAGAGTGAAGGGATAAG
GATAGAGGAAAAAGGACACTCA----------------------------------------------------------
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--------------------------------------------------AGATCGTCCTCTCAGGCCAATGCACGGCGC
AAACA-T-TTTTTTATGAGGTGGCACTCGTGCTTGTGCTCAGATTCGTATAGAGCATTCAACGACAACTAATACGTTCGC
TCCGAATTGGTATAAACCTGACGTTAGATTTATAGCATTTGAGTTCCCCCTTTTATTTTTTTAATTAAT------TATAT
CTATGTTTTAACCGGTTTTCTTAAAAACCGTCTTAACCTTCCCATTTTTATTGACTTGCAAAATAAAT-CATGTTTTCTT
TGGCAAACCAATAAGTGCTTACCAAATAAGCGTGCGTATCAAATAAAACCCTAGAATTTATTTCAACAGGTAAATCATAG
GCATAATTTTATTAGATAAACACCAATTTACACAATCACATCAATATGGACAGGCACTAATCACGCGCTAACATTTTTTT
ATGAGATGGCATTTGCACTTGCGCTCAGATTCGTGCAGAGCATTCGACAACAGCTAATACGTACTCTCGAATTGCTATAA
CATTTGAGCTCCCCCTTTTATTCGTTTTCATTCTATCTCTGGTTTTTTTCATCCGTTTTCTTAAAAACCGTCTTAACCTT
TCCATTTTTATTGACTTGCCAAATAAAATCATGTTTTCTTTGGC-AAACCAATAAATGCTTACCAAATAAACGTGCG-TA
TCAAACAAAACCCTAGAATTTATTCCGACAGGTAAATC------------------------------------------
---ACTGTCGCTGAAACGAGTGTATCTAGAACCGCCAAGCATCCAAAAATACAACATGCCGAACAGCA------------
---------------------------------AAACGCACCTCCCATTCTTAGACGAAAAGCCAACAAACGCACCTCCC
ATGTTTGGGAA---------------CCCACTCGCTCCCTCCCTCCG--TCTTCCTCTTTCTATTCCCACTCCCCCCCAA
AAAAAGGTCCGTCACCA----ACCCAGAGCACCACCAAACGCCGGACCCGGACGCGGAGGCAGGCGGAGGCC--------
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----------------------------------------------------------------------------CGGC
GCGCCGGTCGGCCCCCTTCCATGCTCGCCGGCGCCGGCCGCCGCTGATGCCCAGCCCGCCCAAGGACCGCCCCGCCGGCC
GCCTCGGCCGCCTCATCTCCGCGCTCCGCCCCGCGCGCGCCGGCCCCCTCCCCGTCCAGACCGGCTTCCCCACCTCCCTC
GCCGACCTCTTCGTCAAGAACCATGGCCGCCTCAAGAAGCAGGGC---CCCTCCTCCGGCAGGCGCAAGAGGCGCGGCGC
CCCCCCTTTGCCTTCCTCCGAGCCCTCTCCCCCGCCTCCCTCTCCTCCACC---------CCCGCCGGCCGCCGTCTGCC
CGCCGTCGGCCCAGCCAAGGCCCGACCTTCCGCGGGCGGAGCCCGTCCGCCGCCCCGGAGGCGGGGCCGCCGGCCTCGGA
TTGGGGTTCCTCGCGCTCGTCGGCGTGGCGTCCCTCGCCCTCCTCGTGATCTGGAGCAGGAAGGTGGTTGCGGCCGTCAC
CGTCGCCGCCTTCTCGCTCTTCCTGCTGGAATCCGTCAGGGCGTCCTCGCTTCGCCGGCGGCCCCGGCCCCCGGCGCCCA
CCGCGGAGCTGGATATCGACGACGGCCGCGGCTACGTCTCGCCGATCCGGGAGCTGGCGGGGGAGCCGGAGCCGCTGGGA
TCGAGCTTCTCCGACTCCGGCAGGGGGATCAGCGCCTCCATCCTCGGCATTGACGAGAGGAGCGAGGCCGGCGAGGATTC
GTGCGTCTGGGAGCCGAAGCCGAGGAAGAGGTCGCCTTGGAGGAAGCTGATCCCCAGGAAATTGCAGAGAGGCCGGAAGA
TTGGCAAGGAGTCCGGCTCCCTGTCAAGTTCTTTCCGGTCAAG-------------------------------------
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--------------------------------CTCTTTCCGCAGCGAGGTCAGCGTAGCGGACTCCACGCTCGGCGACAA
TGCCG------GGGCGACGGATCCCCCGGACTCTCGCCGCGGCAGACGCAGCCAAGCGAACGCCAAGGCGGAGGCCGCTG
CCATCGGATCGCGGGACTCATCGGGCCCTCTCCGCCTTGGCATGCTTGACGGCA--------------------------
-------------------------------TCAAATCGCGCGACTCATCGGGCCCTCTCCGCGGCATGGGTGACGGCGC
GGACGCCGCCACCAAATCGCCGGATTCGTCGTGTCCTCTCCGCGACACGGGCAACGGCG---------------GTGCGC
GTGCGCCGATGGGAA------------------TCGCCGGGGCGGACGGCGTAGGGG------GAGGG------GGAGGC
CAGTTCCCCTTGGTAGCTGTGACCGTGGTCGTCCTCGTCGGCCTGGCCGCCGGGAGGGTCCCGGCCGTGGCGCTCACCGT
GCTTTGGTCCGCGCTGGTTGGC---TGGCTTCAGAGATTGCGGCGGGACGGCGATGGATGTACGCACGT-----------
---------------------------------AGGAACCTCCCGATCCCTCCCAGGGTTGATGCAAGTAAATTAGTGAG
TGAGTGGCCATTAAACAGCAGGAGTGAG----CGGTGGTACTATAATCCTTACATATA------CTTGTTCTTAAGTTAT
TG-AAAGCTTGAGTGCATTCCATGATCCCTGATGGTCTGCTC-------------TG--------GCATTCATCGTCCAG
TTCTTGTGCCGATCGAGCTGTCGTTTCAG---CCGTTCACCCGCACAAGCGTCCGCTCACGCCGCCAATGGCCGGCCGGG
CCGGTCCGCGGGCGCCATGGCCGCAAGGTGTTGGGACAGAGAGGGCCAACCGGTTCAGTGCAGCAGATGGCACATGCCCT
GCGATCCCAACACGACCAACGGAAACTCCGGCGTTTCGCTTGCACTCCATATGGACAGACAAAGCACAAGCTCCATCGAT
----ATGGCTTTGTCCAAAGCGAG--------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CGCTTTTCGCCGCGGCA
TGCGGAGCGTGCCGCCACGTCCCGGACGTGCGTGCCCCGTTCTCCTTCTCCCTCCCCCGTGGCCGAGCTCCGTCCGTCCG
TCCGTCCATGGCGCCGCGCCGGTGGCGGATGGA---TCGCGTCTCGAATCGTCCGTTCCGGCGATAAAGGCAAGGCGCAG
ATTAATAAATCGATCAGCAGCTTCCATTTGGACGGTCCAGCCCAGTCCAGCAGCTCCGATTCGTTCGTGCTCGCGGCCGG
CCGGTCCACGGCAGGGGAGGTGGCTGTCAGATGAGATCATCGCGAGCGCGTTCTCCACGGCGTTGTTTATGCC-------
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------------------GGCCAAAGTCTCGCTACCCGATTTTTGTGCTGGTTTGATTCCAGCCGTCGGCAGCTGCTACA
CCGGCCAAAAACTCCTTTTCTACAAAACTCATCGCCAAAGAGGGTCTTGGAGCTTCTTCGAGTAACCGGCTGGTGCACGA
ATTCAAAAACTCCGTTTCCACATTTCGTGCTGGTTCGCTATCCGTTGGAGTATAGGATCTGACTTTCTTCCATACTTCGA
AATTTCCGAGTAACTGGCCGGTGCATGAATTCAATAAGGTATCCGAGGAGTGAATTGCAAAAAACAACCATATTTAGGGC
TTCATCTGCGGAAAA
>chr4D_39
--------------------------------------AACAAGAGAAAAGTGAGC-GAGTTTTAGAGTGAAGGGATAAG
GATAGAGGAAAAAGGACACGAGCTCGTCAAAAAGTCACTTTGGTGGACGGGTGCATTGGAGCCCTATATTTTGAATAGTG
CCAGAATGATATTTAGAAGTTTCAAGAAATTCCAAAAACAATTCCACATGTTCATATGGATGTATGTTACACACGTGCAA
ATTCTAGTGATGAAATAGGTAACCATGTGAGTTACACACAAATGACAAAATCCTGATTTTGGAAAGATGAACAGTGCATG
TATTATTCACTATCTAGATATCATCATTTGTCATTTCTGCATAGCTCACATGTTTACTTATTTCATCACCATACTTTACA
CATGTGTAATATCCATCCATATGATCATGTAGAATTACTTTTGGGATTTTTTGAAATTTTAAATGAGATTCTTAAACTAT
TTAAAATAAAGTCCTCCAATGCGCCCATGTTCCAAAAATTCACTCTCATGAGCTCGTTCTCTATGGTCGACACACAACAC
AAACGTTTTCTTTTATGAGGCGGCACTCGCACTTGCGCTCAGATTCGTCCAGAGTATTTGATAGCGGCTAATACATTTGC
TCCAAATTGCTATAAATCCGACGTCAGATTTATAGCATTTGAGTTCTCCCTTTTGATTTGTTTTCATTATATCTCTAGGT
ATTTTTTTTCATCAATTTTCGTAATAACCGTATTAACTGTCCCATTTTTATCGACTTACCAAATAAAAACATGTTTTCTT
TGGCAAACCAACAAGTGCTTGCCAAATAAGCGTGTTCACCAAATAAATTCTAGC-ATTTATTTCCACAGGTAAATCACAG
GCATAATTTTATTTGATAAACATCACTGTACGCAATAACATTGATACGGACAAGTAACTACGTGCTATAACTTGCTAGTA
CTCTCTCCGTTTCTAAATAAAAGACCTTTTAGTGATTTCAATACGGACTGCATACGGATGTATATTGGCGCATTTTACAG
TGAAGATTCACTCATTTTGCTCCGTATGGAGGATGTAGAACAATAATACCAATTACGGCAATTGTCTAGTC---------
-------------------------------------------------------------ACCAAATAAATGAAGTAGG
AGAACAAGATAAGCACAA-------------------------------------------------CCTCCGTCCGGAA
TTAACTGTCGCTGAAACGGGTGTATCTGGAGCCGCCAACCACCC-AAAATACAGC--ATGCCAAACAGCTAAACATCGCT
TCCTTTTTCTCCCGTTTCAAATCAAAAACAGCTAAACACACCTCCCATTCTTAGACCAAAAGCCAACAACGAACGCATGG
AAAACAAAACGGAAATGTTTGGTTGCCCCACTCGCTCCCTCCCACTTCCTCTTCCTCTTTCTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGC
GCGCCGGTCGGCCCCCTTCCATGCTCGCCGGCGTCGGCCGCCGCTGATGCCCAGCCCGCCCAAGGACCGCCCCGCCGGCC
GCCTCGGCCGCCTCATCTCCGCGCTCCGCCCCGCGCGCGCCGGCCCGCTCCCCGTCCAGACCGGCTTCCCCACCTCCCTC
GCCGACCTCTTCGTCAAGAACCATGGCCGCCTCAAGAAGCAGCAGGGGCCATCCTCCACCAGGCGCAAGAGGCGGGGCGC
TCCCCCTTTGCCTTCCCCGGAGCCCTCTCCCCCGCCCCCCTCTCCTCCACCGCCGTCGCCCCCGCCGGCCGCCGTCTCCC
CGCCGTCGGCCCAGCCAGGGCCCGACCCTCCGCGGGCGGAGCCCGTCTGCCGCCCCGGAGGCCAAGCCGCCGGCCTCGGA
TTGGGGTTCCTCGCGCTCGTCGGCGCGGTGTCCCTCGCCCTCCTCGTGATCTGGAGCAGGAAGGTGGTTGCGGCCGTCAC
CGTCGCCGCCTTCTCCCTCTTCCTGCTGGAATCCGTCCGGGCGTCCTCGCTTCGCCGGGGGCCCCGGCCCCCGGCGCCCA
CCGCGGAGCTGGACAT---CGACGGCCGCGGCTACGTCTCGCCGATCCGGGAGCTGGAGGGGGAGCCGGAGCCGCTGGGG
TCGAGCTTCTCCGACTCCGGCAGGGGGATCAGCGCCTCCATCCTCGGCATTGACGAGAGGAGCGAGGCCGGCGAGGATTC
GTGCGTGTGGGAGCCGAAGCCGAGGAAGAGGTCGCCATGGAGGAAGCTGATCCCCAGGAAATTGCAGAGAGGCCGGAAGA
TTGGCAAGGACCCGGGCTCCCTGTCAAGTTCTTTCCGGTCAAG-------------------------------------
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--------------------------------CTCTTTCCGCAGCGAGGTCAGCCAGGCGGATTCCACGGTCGGCGGCAA
TGCCG------GGGCGACGGATCCCCCGGACTCTCGCCGCGGCAGACGCAACCAAGCGAATGCCAAGGCGGACGCCGTGG
GCAAG---TCGCCGGATTCATCGGGCCCTCTCCGCCTTGGCATGGTTGACGGC---ATCAAATCGCGCGATTCGTCGGGC
CCTCTCCGCCTTGGCATCATGGGCGACGGCGTCAAATCGCGCGACTCATCGGGCCCTCTCCGCGGCACGGTCGACGGCGC
GGACGCCGCCACCAAATCGCCTGATTCGTCGGGCCCTCTCCGCGGCATGGTTGACGGCGAGGCGCGCAACAACGGTGCGC
GTGCGCCGATAGAAC------------------TCGCCGGGGCGGACGGCGT---------------------AGGAGGC
CGGTTCCCCTTGGTAGCTGTAACCGTCGTCGTCCTCGTAGGCTTGGTCGCCGGGAGGGTCCCGGCCGTGGCGCTCACCGT
ACTTTGGTCCGTGCTGGTTGGC---TCGCTGCAGAGATTGCGGCGGGACGGCGATGTAGGAA------------------
------------------------------------------------CCTCCCAGGGTTGATGTACATT--------AG
TGAGT-GGTGG------------------------------TATAATCCTTACATACATAATTG-TTGTTCTTAAGTTAT
TAAAAAGCTTGAGTGCATTCCATGATTTCTGATGGTGCAGCAT-----------------------------TCATCCAG
TTGTTGCGCCGATCGAGCTGTCGTTTCAG---CCAT--------------------TCACGCCGCCAATGGCCGGCCGGT
CC---------GCGCCATGGCCGCGAGGTGTTGGGACAGAGAGGACCAACTGGTTCGGT---GCAGATGGCACATGCCCT
GCACCCCCAACACGACGAGCAGAAACTTGGGCGTTTTAGCGAGAA-GTAGAGGG--AGACACAGCGCAAGCTCCATCCAT
CGATATGGCTTTGTCGATCCGCGCCGAACGAAACGAAACAGCTTTGGATTCTTCCGTTGCTTGTCCG-TGGCCGTGGCTG
GACCAGGCTACCAAAAGCCGCATGCAGCGAAAGCAGAGGCGGCAGGCAGGCACGGAGAGCGAGCAGCGCAGGCCACC---
-------------------------GTTCATGAATCACGAGGCTACCAACGGACGGCATTGCTCGCTTTTCGCCGCGG--
---------TGCCGCCACGTCTCG---------GCCCCCTTCTCCTTCTCCCTCTCCCGTGGCCGAGCTCCGTCCGTCC-
-------ATGGCGCAGCGCCGGCGGTGGATCGCGTCTCGAGTCTCGAATCGTCCGTTCCGGCGTTAAAAGCAAGGAGCGG
ATGGATTCCTCTCTTT---GCTTCCATTTGGACGGTCCAGC----------AGCTCCGATTCGTTCCTGCTCGCGGCCGG
CCAGTCCACCATAGGGGAAGTGGCTGTCAGATGAGATCATCGCGAGCGCGTCCTCCCGTCGTTGTCACGTAGCCGTGGCA
CTCCGGCGAATGCCAAGACTCATGTAAGTCAAGCAGTAAGTGGCGAGGCTTGTTTTGTTGGCAACTTTCACAAGTTTCTG
TGCGGGAATTGATTCCCTGGTCAAAGTCTCG---CCCGATTTTTGTGCTGGTTTGATTCCAGCCGTCGGCAGCTACTAGA
CCGGCCAAAAACTTCTTTTCTACAAA-CTCATCGCCACAGA-GGTCTTCGAGCTTCTTTGAGTAACTGGGTGGTGCATGA
ATTCAAAAACTCCTTTTCCACATTTTGTGCTGGTTTGCTATCCGTTGGAGTATAGTGTCCGACTTTCTTCCGTACTTCGA
ACTTTGTAAGTAACTGGCTGGTGCATGGATTCAACAAGGTAT--------------------------------------
---------------
>chr4B_49
------------------------------------------------AAAGTGAGTGAATTTGAGAGTGAAGGGATAAG
GATAGAGGAAAAAGGAGACG------------------------------------------------------------
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--------------------------------------------------AGCTCGTTCCCTGTGGTTGATACACAACAA
AAGTGTT-TCTTTTATGAGGGGGCACTCGCACTTGCGCTCAGATTCGTATAGAGCATTTGATGGCAGCTAATGCATTTGC
TCCGAATTGCTATAAATCTAGCGTCAGATTTATAACATTTGGGTTCTCCCTTTTGATATTTTTTTTAAT------TCTAT
CT---------CCGGTTTTCTTAAGAAACATCTTAATTGTCCT-------------------------------------
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---ATTTTTATTGACTTGCCAAATAAAATCATGTTTTCACTGGCAAAGCCAACAAGTGCTTACCAAAATAAGCGTGTATA
TCAAATAAATCCCTAGAATTTATTTTGACAGGTAAATCGCGGGCGTAATCGTGTGAGATAAGAACAGCCTTCGTCCAGAA
TGAACTGTCGCTCAAACGAGTGTATCTAGATGACCCA-------AAAAATACAGCATATGCCAAACAGCTACTCCTTTTC
TTCCGTTG--------------CAAAAACAGGTAAACACACCTCCCATTCTTAGACCAGAAGCCAACAAGAAACGCACGG
AAAACAAAACAAAAATGTTCC-------------CTCCCTCCCACTTCCTCTTCCTTC--CTATTCCAACTCCCCCCAAA
AAAAGGTCACCAACCCAGAGCACCCGGAGCACCACCAAACGCCGG--CCGGACGCAGAGGCAGGCAGCGGCAGAGGCC--
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--------CGGCGCCCTTCCATGCTCGCCGGCGCCGGCCGCCGCTGATGCCCAGCCCGCCCAAGGACCGCCCCGCCGGCC
GCCTCGGCCGCCTCATCTCCGCGCTCCGCCCCGCGCGCGCCGGCCCGCTCCCCGTCCAGACCGGCTTCCCCACCTCCCTC
GCCGACCTCTTCGTCAAGAACCATGGCCGCCTCAAGAAGCAGCAGGGGCCCTCCTCCGGCAGGCGCAAGAGGCGCGGCGC
TCCCCCCTTGCCTTCCCCGGTGCCCTCTCCCCCGCCTCCCTCTCCTCCACCGCCGTCGCCCCCGCCGGCCGCCGTCTCCC
CGCCGTCGGCCCAGCCAGGGCCCGATCCTCCGCGGGCGGAGCCCGTCTGCCGCCCCGGAGGCCAAGCCGCCGGCCTCGGA
TTGGGGTTCCTCGCGCTCGTCGGCGTGGCGTCCCTCGCCCTCCTCGTGATCTGGAGCAGGAAGGTGGTTGCGGCCGTCAC
CGTCGCCGCCTTCTCGCTCTTCCTGCTGGAATCCGTCAGGGCGTCCTCGCTTCGACGGCGGCCCCGGCCCCCGGCGCCCA
CCACGGAGCTGGATAT---CGACGGGCGCGGCTACGTCTCGCCGATCCGGGAGCTGGAGGCGGAGCCGGAGCCGCTGGGA
TCGAGCTTCTCCGACTCCGGCAGGGGGTTCAGCGCCTCCACCCTCGGCATTGACGAGAGGAGCGAGGCCGGCGAGGATTC
GTGCGTTTGGGAGCCGAAGCCGAGGAAGAGGTCGCCGTGGAGGAAGCTGATCCCCCGAAAATTGCAGAGAGGCCGGAAGG
TTGCCAAGGACTCGGGCTCCCTGTCAAGTTCTTTCCGGTCAAG-------------------------------------
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--------------------------------TTCCTTCCGCAGCGAGGTCAGCCTAGCGGATTCAACGGTCGGCGGCAA
TGCAATTGCCAGGGCGACGGATCCCCCGGACTCTCGCCGCGGCAGACGCAGCCAAGCGAATGCCAAGGGGGAGACCGCCG
CTGC------------------------------------------------------CAGATCGCGGGACTCATCGGGC
CGTCTCCGCCTTGGCATCATGGGCGACGGCGACGG---------------------------------------------
---CGCCGGCATCAAATCCGCTGATTCATCGGGCCCTCTCCGCGGCATGGGCGGCGCCGAGGTGCGCAACAACGGCGCTT
------CGATAGAAATCGAGGAGCCGGCCGGTGTCGCGGTGGCGGACGGCGTTGGCGTAGGACGAGG---AGGAGGAGGA
GGGTTTCCCTTGGCAGCTGTGACCGTGGTCGTCCTCGTAGGCTTGGTCGCCGGGCGGCTCCCGGCCGTGGCGCTCACCGT
GCT------------GGTGTGCGCGGCGCTCCAGAGACTGCGGCGGGACGGGACGGTGGTGCCGGCTTGGGAGGGGAGGG
GAGGCGGTTAGAGCTTTCCATGGCGGGCGTAGGAGGAGCCTCCCGA----TCCCAAGGTTGATGTATGTAAATTAGTGAG
TGAGT-GCCATTAAACAGCAGGAGTGAGTGAACGGTGGTACTATAATCCTTCCTTACTACATAC-TTGTTCTTAAGTTAT
TCAAAAGCTTGAGCGCATTCCGTGATCCCTGATGGTCTCTCCTCCGGCACCCTAGTG--------GAATTCAGCATCCAG
TTCTTGTGCCATTCACCCGCCCGCACAAACGTCCAT--------------------TCACGCCGCCAATGGCCGGCCGGG
CTGGTCTC----CGCCATGGCCACAGGGTGTTGGGACAGAGAGGACCAACTGGTCGAGT---GCAGATGGCACATGCCCT
GCAACCCCAACACGACGAGCAGAAACTTGGGCGTTTTAGCGAGAACGTAGAGCG--AGACAAAGCGCAAGCTCCGTCCAT
----ATGGCTTCGTTGATCCGCGCCGGAAGA----AAACAGCTTTGGATTCTTCCGTCGCTTGTCCCTTGTCCGTGGCTG
GACCAGGCTACGAAAAGCGGC-----------------------GGCAGGCACGGAGAGCAGAGCAGCAGGGCCATGGTT
CCAAAGCGCGCGAGCGAGCGAGGAGGTTGGTGGATCACGAGGCCACCAACGG--------------------------CA
TCCCTCGCTTTTCGCCACGTCTCG---------GCC-------CCTTCTCCTTCTCCCGTGGCCGAGCTCCGTCCGTCCG
TCC-----------------------------------------------------------------------------
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>chr3D_1505
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----------------------------------------------------------------------CGGCCGTCCC
CGTCGCCGCCTTCTCCCTCTTCCTGCTGGAATCCGTCCGGGCGTCCTCGCCTCGCCGGGGGCCCCGGCCCCCGGCGCCCA
CCGCGGAGCTGGACAT---CGACGGCCGCGGCTACGTCTCGCCGATCCGGGAGCTGGAGGGGGAGCCGGAGCCGCTGGGG
TCGAGCTTCTCTGACTCCGGCAGGGGGATCAGCGCCTCCATCCTCGGCATTGACGAGAGGAGCGAGGCCGGCGAGGATTC
GTGCGTGTGGGAGCCGAAGCCGAGGAAGAGGTCGCCATGGATTCGTGCG-------------------------------
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-------------------TGTGGGAGCCGAAGCCGA-------------------------------------------
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-------------GGATTCATCGGGCCCTCTCCGCCTTGGCATGGTTGACGGC---ATCAAATCGCGCGATTCGTCAGGC
CCTCTCCGCCTTGGCATCATGGGCGACGGCGTCAAATCGCGCGACTCATCGGGCCCTCTCCGCGGCACGGTCAACGGCGC
GGACGCCGCCACCAAATCGCCTGATTCGTCGGGCCCTCTCCGCGGCATGGTTGACGGCGAGGCGCGCAACAACGGTGCGC
GTGCGCCGATAGAAC------------------TCGCCGGGGCGGACGGCGT---------------------AGGAGGC
CGGTTCCCCTTGGTAGCTGTAACCGTCGTCGTCCTCGTAGGCTTGGTCGCCAGGAGGGTC--------------------
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---------------
>chr1B_1786
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-------------------------------TCGCCATGGAAGAAGCTGATCCCCAGGAAATTGCAGAGTGGCCGGAAGA
TTGGCAAGGACTCAAGCTCCCTGTCAAGTTCTTTCCGGTCAAG-------------------------------------
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--------------------------------TTCCTTCCGCAGCGAGGTCAGCCTAGCGGATTCCACGCTCGGCGGCAA
TGCCATTGCGAGGGCGATGGATCCCCCGGTTTCTCGCCGCGGCAGACACAACCAAGCGAATGCCAAGGCGGACGCTGTGG
GCAAG---TCGCCGGATTCATCGGGCCCTCTCCGCCTTGGCATGGTCGACGGCGGCATCAAATCGCGTGATTCATCGGGC
CTTCTCCACCTTGGCATCATGGGTGACGGCGACGG---------------------------------------------
---TGCCGCCCTTAAATCGGCCGATTCATCGGGCCCTCTCCGCGGCATGGGCG---CCGAGGTGCGCAACAACGGCGCTT
------CGATAGAAATCGAGGAGCCGGCCGGTGTCGCCGGGGCGGACGGCATAGGCG------GAGG---AGGAGGAGGC
CGGTTTCCCTTGGTAGCTGTGACCGTCGTCGTCCTCATAGGCTTGGTCGCCGGGAGGCTCCCGGACGTGGCGCTCACCGT
GCT------------GGTCTGC---ACGCTCCAGAGACTGCGGT-----GGGACGGTGGTGCCGGCTTGGGAGGGGAGG-
----CGGTTAGAACTTTCCATGGT----GTATGAGGAGCCTCCCGA----TCCCAAGGTTGATGTAAATT--------AG
TGAGT-GCCATTAAACAGCAGGAGTGAGTGAGTGGTGGT---GTAATCCTTGCATACATAATCCCTTGTTCTAAAGTTAT
TG-AAAGCTTGAGTGCATTCCATGATCCCTGATGGTCTCCTC-------------TGGCAACATAGCATTCATCATCCAG
TTCTTGTG----CCGAGCTGTCATTTCAG---CCAT--------------------TCACGCCGCCAA------------
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---------------
>chr1B_1786
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-------------------------------TCGCCATGGAGGAAGCTGATCCCCAGGAAATTGCAGAGAGGTCGGAAGA
TTGGCAAGGACTCGAGCTCCCTGTCAAGTTCTTTCCGGTCAAGTTTGTTGGAGCCGACTCTCTGAGCTCACCTCTTCTCT
CTTGGTTGTTTCACACAACACACGCAAGAACACAAGAACACAAAAAGTTTGGTGCCGCTGCCTCACACAGTCAGCGTTTT
CTTCTGTCTATTTCTTGTCAAAGGTAAACATGCTTTGCATCTGTATAAGTAGCAGCCACACAGGCGCACTACCCGGCCAC
TAGCAGTGCCCACGCACGCATAACTCTTCCCCTAGAATCTCTCTAGGACGTGCAAGCTCATGCGGCTAACTAACCTATCC
ATGCGCTAACAAACTAACAAACTAGACGATCTCCTCTAGTTGATATTTTTCCACCCGGTCTAACCCCAGCCACGCCTTAC
CGCTTCTCACGGCCATGCTGCATCTCACAGCTGTGCGCACTCAGCCGAGACCTTGCCGGACGACTCCCTACGCTAAATGC
AGAACGAAAAACCAAAAACATGCAGATACACGAGACATCAAGATTATATCTAACATTCAACCCCCTAATCTTGATGGCCA
ATCTTCACGCAGAAACTTCAAAGGAGAGCCGGCCAGCAGCGCCTTCTCCTCATTCTCCTTCTTCTTCTCCGGACACTCCC
AAGTAAAGTGACCAAGTTGACGAGAATTGTAACACTGTACCTCACTGTTGTCTTTGCGTCCTCCACCGCGTCCACGGCCA
CGACCCCATCCTCGCGACGAGTCTTGCCATCTCGCCATGAGGAGCTGCTCTTCTTCACGTCCTGTCTCCCGCTCCTTGAC
GAGTTCCTCGTGTGCCTTGAGTGAACCAATGGCCTCCTCCATGGCCATCTTGTTGGTGTCGCCGAACAATGCAATCGATG
ACGCAACGTGGATGAACTTGTTGGAGACGGCTCGGAGCAGCTTCTTCACGACGTACTTCTCCTCCATCGCATCACCAAGC
TCACGGATGCGCCCCACGAGCGTCGTGAACCTCGCCGCGAAATCATCCACGGACTCCGCATCGCCCATCTTGAGGCCATC
AAACTCCGAGCGCAAGGACTGAATCCTCGCCTCTCGGACGCGCTCGACGCCAACGTGCATGGAGCGTAGCGCCACCCACA
CATCGGCGGCGGTCTCCTTCTCAGCAACGCGCAGCAGCGTCGTGTCGTCGATCGACTGGGAGATGATCGTCATGGCCATC
TCCTCCTTGCCCTTGTCGACCTCCGAGGCCGACGCCTCGCGATCAACGGCCCCCCACGCGCCATTGGCGCGCAAGAGGTA
CTTCATCCTCATCGCCCACGCCGCGTAGTTCGTCCTTGTGAGCAGCGGGAACGGGAGCTTCCTTGCCGCCGCCGTCGCCG
CCGCAGCCGCCGTCGCTGACGAGTCGCTCGGCACTAACGCTCCACTCGCTGAAGAATCACGCGGCATCGTCTTCGTCATC
ACCTGGCGCTGATACCAAATGTTGGAGCCGACTCTCTCAGCTCACCTCTTCTCTCTTGGTTGTTTCACACAACACACGCA
AGAACACAAGAACACAAAAAGTTTGGTGCCGCTGCCTCACACAGTCAGCGTTTTCTTCTGTCTATTTCTTGTCAAAGGTA
AATATGCTTTGCATCTGTATAAGTAGCAGCCACACAGGCGCACTACCCCGCCACTAGCAGTGCCCACGCACGCATAACTC
TTCCCCTAGAATCTCTCTAGGACGTGCAAGCTCATGCGGCTAACTAACCTATCCATGCGCTAACAAACTAACAAACTAGA
CGATCTCCTCTAGTTGATATTTTTCCAGCCGGTCTGACCCCAGCCACGCCTTACCGCTTCTCACGGCCATGCTGCATCTC
ACAGCTGTGCGCACTCAGCCGAGACCTTGCCGGACGACTCCCTACGCTAAATGCAGAACGAAAAACCAAAAACATGCAGA
TACACGAGACATCAAGATTATATCTAACAAAGTTCGTTCCGTAGCGAGGTCAGCCTAGTGGATTCCACGCTCGGCGGCAA
TGCCATTGCAAGGGCGATGGATCCCCCGGATTCTCGCCGCGGCAGATGCAGCCAAGCGAATGCCAAGGCGGACGCCGTGG
GCAAG---TCGCCGGATCCATCGGGCCATCTCCGCCTTGGCATGGTCGATGGCGACATCAAACCGCGCGATTCATCGGGC
CTTCTCCGCCTTGGCATCATGGGTGACGACGACGG---------------------------------------------
---TGCCGCCATTAAATCGGCTGATTCATCGGGCCCTCTCCGCTGCATGGGCA---CCGAGGTGCGCAACAACGGCGCTT
------GGATAGAAATCGAGGAGCCGGCCGGCGTCGCCGGGGCGGACGGCGTAGGGG------GAGGTGGAGGAGGAGGT
CGGTTTCGCTTGGTAGCTATGACCGTCGTCGTCCTCATAGGCTTGGTCGTCGGGAGGCTCCCGGTCGTGGCGCTCACCGT
GCT------------GGTCTGC---GCGCTCCAGAGACTGCGGT-----GGGACGGTGGTGCCGGCTTGGGAGGGGAGG-
----CGGTTAGAGCTTTCCATGGC----GTAGGAGGAGCCTCCCGA----TGCCAAGGTTGACGTAAATT--------AG
TGAGT-GCCATTAAACAGCAGGAGTGAGTTAGTGGTGGT---ATAATCCTTGCATACATAATCC-TTGTTCTTAAGTTAT
TG-AAATCTTGAGTGCATTCCATGATCCCTGATGGTCTCCTA-------------TGGCAACGTAGCATTCATCATCCAG
TTCTTGTG----TCGAGCTGTCGTTTCAG---CCAT--------------------TCACGCCGCCAA------------
--------------------------------------------------------------------------------
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---------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------------------------------------
-------------------SSS----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S----S----SS--S-S--S---SS-S-
----S----S----------S--------SS----S----------------------SS-S-S--S-------S--S--
---------S------S-------S---------------------S-------SS------SS----------------
--S-S----S--------------S------------SS------------S-----S-S-------S------------
-----------S--------S-------------SSS-S--------SS-SSSSS---------S------------S--
-------------S--------S--S-S---S----S----SS---S-----S-S-SSS-SSSSSSSSS-SSSSS-SS-S
S-SSSSSS-SS-S-SS-SSSSS-SS-SSS-SSSSSSSSSSSSSSS---SS--SSSSSSSSSSSS-SSSSSSS-SS--S-S
SSSSSSSS-S-S-SS---SS-S---S-SS-SSS-S-SSSSSSS-SS-SS--SSSSSSSSSS-SSSSSSSSSSSSSSSSSS
SSS-----------------------------------SS-------S----S--S---------------S-SSSS---
-----S---S--------------SS------------------------------------------------------
------------------------------S-------S--S-----------S---SSSSS-S-SSS------------
-------------------------------------S------------------S------------SSSSSS-S-SS
-SSSSSSSSS---------------------------------S-SS--------------------S---------S--
----S-SSS-SSSS-----------S-------------------SS--------S---------S-S---S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
------------------------------------------SSS-----------------------------------
S---------------S-S----------------------------------------------------------S--
-----------------S---------S-------------------S--------------SSS---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------SSS--------------------------------------S----------------------
--------------------------------------------------------------------------------
------S-----------------------------S-------------------------------------------
----------S--S------------------------------------------------------------------
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------------------------------------------------------S-------S-------------S---
------------------------------------------------------------S-----------------S-
---SSSSS----S---S---------------------------S--------S--------------------------
-------------------------------------------------------------------S--SS--------
---------------------S---------S-S----------S--S--------------------------------
----------S-S------------------------------------------------------S------------
-S------------------------------------S---S---S---------------------------------
-----------S--------------S---S-------------------------S-S-S---SSSSS-----------
-------------------------------------S--------SS----------------S---------------
-----S--------------------------------------------------S-----------------------
--------------------------------------S-----------------------------------S-----
----------------------------------S-SSSSSSSSSSSSSSSSSSSS------------------------
------SSSSS---------------------------------S-----S--------SSS------------------
--S-S-----------S-S-S------SS-------SSSSSSS-SSSS-S-S--SS---------S-----------S--
---------------S-SSSSSSS--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S-SSS--S------------S--SSSSSSSSS-----S---------------S-------------------------
---SSSS-------S-------S--S----S-S------S-----------------------S----S------S--S-
--SS--SSS--SS-SSSSS----------------------SSSSSSSSSS---------------S-------------
--S------SSS------S--------------------------------S----SSSSSS-SSSSSS-SS--------
--------------------------------------------------------------------------------
--------------------S----------SSS----------------------------------------S---S-
-------------S------------S----------S---S------S---------S-------S--S-------S--
-------------S-----------S---------S-------------------SS--S-----------S--------
-S---SSS----------S--------S------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_1443
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---------------------------------------------------------------CAACAAACGCACCTCCC
ATG-----------------------------------------------------------------------------
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>reverse_2734
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-------------CGGCTCCCTGTCAAGTTCTT-----------------------------------------------
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>forward_1444
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------AACAAACGCACCTCCC
ATGT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4982
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---------------------GGATTCGTCGTGTCCTCTCC---------------------------------------
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---------------
>forward_1446
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------CAAACGCACCTCCC
ATGTTT--------------------------------------------------------------------------
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>reverse_5268
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-------------------------------------------------------------------GTAGGAACCTCCC
GATCCCT-------------------------------------------------------------------------
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---------------
>forward_4992
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-------------AAATCGCCGGATTCGTCGT------------------------------------------------
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---------------
>reverse_6716
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---------------------------------------------------------------------------AGGGC
TTCATCTGCGGAAAA
