Multiple sequence alignment - TraesCS4A01G293000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G293000 chr4A 100.000 2597 0 0 1 2597 595361304 595358708 0.000000e+00 4796.0
1 TraesCS4A01G293000 chr4D 89.323 1639 61 48 543 2093 7910555 7912167 0.000000e+00 1953.0
2 TraesCS4A01G293000 chr4D 88.525 183 16 3 2145 2323 7912302 7912483 1.570000e-52 217.0
3 TraesCS4A01G293000 chr4D 90.541 74 7 0 2514 2587 7914280 7914353 5.910000e-17 99.0
4 TraesCS4A01G293000 chr4D 92.157 51 2 1 2464 2514 7914143 7914191 1.290000e-08 71.3
5 TraesCS4A01G293000 chr4B 90.565 1399 56 31 539 1891 14388052 14389420 0.000000e+00 1783.0
6 TraesCS4A01G293000 chr4B 90.263 380 27 9 1 373 14387633 14388009 3.000000e-134 488.0
7 TraesCS4A01G293000 chr4B 90.217 92 8 1 204 295 82676109 82676019 4.540000e-23 119.0
8 TraesCS4A01G293000 chr4B 91.139 79 6 1 216 294 527370257 527370180 3.530000e-19 106.0
9 TraesCS4A01G293000 chr5B 77.023 618 78 44 1001 1579 13179475 13178883 1.950000e-76 296.0
10 TraesCS4A01G293000 chr5D 76.545 631 88 40 1001 1579 13719622 13719000 9.090000e-75 291.0
11 TraesCS4A01G293000 chr5A 78.619 449 48 31 1199 1609 10480906 10480468 1.190000e-63 254.0
12 TraesCS4A01G293000 chr6D 93.827 81 4 1 215 295 84218449 84218370 1.260000e-23 121.0
13 TraesCS4A01G293000 chr6B 91.250 80 6 1 215 294 275935310 275935232 9.830000e-20 108.0
14 TraesCS4A01G293000 chr7D 90.244 82 5 3 215 295 126048680 126048601 1.270000e-18 104.0
15 TraesCS4A01G293000 chr7D 89.157 83 8 1 212 294 64978127 64978208 4.570000e-18 102.0
16 TraesCS4A01G293000 chr7B 90.244 82 5 3 215 295 151121086 151121007 1.270000e-18 104.0
17 TraesCS4A01G293000 chr2A 88.750 80 8 1 215 294 755365886 755365808 2.130000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G293000 chr4A 595358708 595361304 2596 True 4796.000 4796 100.0000 1 2597 1 chr4A.!!$R1 2596
1 TraesCS4A01G293000 chr4D 7910555 7914353 3798 False 585.075 1953 90.1365 543 2587 4 chr4D.!!$F1 2044
2 TraesCS4A01G293000 chr4B 14387633 14389420 1787 False 1135.500 1783 90.4140 1 1891 2 chr4B.!!$F1 1890
3 TraesCS4A01G293000 chr5B 13178883 13179475 592 True 296.000 296 77.0230 1001 1579 1 chr5B.!!$R1 578
4 TraesCS4A01G293000 chr5D 13719000 13719622 622 True 291.000 291 76.5450 1001 1579 1 chr5D.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 401 0.040058 TAGGCCCTGTTCGGTAGTCA 59.96 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 2080 0.106519 ATATCACCCAGTGGCAAGGC 60.107 55.0 2.61 0.0 33.87 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 2.654877 ACGAGTTTGCGTCCGGAT 59.345 55.556 7.81 0.00 41.22 4.18
137 138 1.089481 TGCGTCCGGATGAAAGATGC 61.089 55.000 28.06 11.05 41.82 3.91
146 147 1.594862 GATGAAAGATGCGAAGGACCG 59.405 52.381 0.00 0.00 0.00 4.79
153 154 1.338107 ATGCGAAGGACCGGATCATA 58.662 50.000 9.46 0.00 35.76 2.15
172 174 7.664731 GGATCATATTCTCCATCTGATTGTTGT 59.335 37.037 0.00 0.00 30.61 3.32
183 185 5.411831 TCTGATTGTTGTAGCATCTCTGT 57.588 39.130 0.00 0.00 0.00 3.41
196 205 5.625150 AGCATCTCTGTAAAAGTGAGGTTT 58.375 37.500 0.00 0.00 33.75 3.27
217 226 9.764363 AGGTTTCAATTTACAATTTTTCTCTCC 57.236 29.630 0.00 0.00 0.00 3.71
218 227 8.699749 GGTTTCAATTTACAATTTTTCTCTCCG 58.300 33.333 0.00 0.00 0.00 4.63
219 228 9.244799 GTTTCAATTTACAATTTTTCTCTCCGT 57.755 29.630 0.00 0.00 0.00 4.69
220 229 9.458374 TTTCAATTTACAATTTTTCTCTCCGTC 57.542 29.630 0.00 0.00 0.00 4.79
221 230 7.590279 TCAATTTACAATTTTTCTCTCCGTCC 58.410 34.615 0.00 0.00 0.00 4.79
222 231 5.952526 TTTACAATTTTTCTCTCCGTCCC 57.047 39.130 0.00 0.00 0.00 4.46
223 232 3.502123 ACAATTTTTCTCTCCGTCCCA 57.498 42.857 0.00 0.00 0.00 4.37
227 236 6.187682 ACAATTTTTCTCTCCGTCCCATAAT 58.812 36.000 0.00 0.00 0.00 1.28
242 251 6.091713 CGTCCCATAATGTAAGACGTTCTTTT 59.908 38.462 5.74 0.00 43.89 2.27
253 262 4.117685 AGACGTTCTTTTGACACTACACC 58.882 43.478 0.00 0.00 0.00 4.16
285 295 6.422776 AAAACAGCTTACATTATGAGACGG 57.577 37.500 0.00 0.00 0.00 4.79
309 319 4.946772 GGGGAGTAGGTATAGTTATCGGTC 59.053 50.000 0.00 0.00 0.00 4.79
366 377 3.788227 AGTTGCTCATTCCACCACTTA 57.212 42.857 0.00 0.00 0.00 2.24
367 378 4.307032 AGTTGCTCATTCCACCACTTAT 57.693 40.909 0.00 0.00 0.00 1.73
368 379 4.666512 AGTTGCTCATTCCACCACTTATT 58.333 39.130 0.00 0.00 0.00 1.40
369 380 5.815581 AGTTGCTCATTCCACCACTTATTA 58.184 37.500 0.00 0.00 0.00 0.98
371 382 6.891908 AGTTGCTCATTCCACCACTTATTATT 59.108 34.615 0.00 0.00 0.00 1.40
372 383 8.052748 AGTTGCTCATTCCACCACTTATTATTA 58.947 33.333 0.00 0.00 0.00 0.98
373 384 8.345565 GTTGCTCATTCCACCACTTATTATTAG 58.654 37.037 0.00 0.00 0.00 1.73
374 385 6.998074 TGCTCATTCCACCACTTATTATTAGG 59.002 38.462 0.00 0.00 0.00 2.69
375 386 6.072452 GCTCATTCCACCACTTATTATTAGGC 60.072 42.308 0.00 0.00 0.00 3.93
376 387 6.303839 TCATTCCACCACTTATTATTAGGCC 58.696 40.000 0.00 0.00 0.00 5.19
377 388 4.717279 TCCACCACTTATTATTAGGCCC 57.283 45.455 0.00 0.00 0.00 5.80
378 389 4.312487 TCCACCACTTATTATTAGGCCCT 58.688 43.478 0.00 0.00 0.00 5.19
379 390 4.104102 TCCACCACTTATTATTAGGCCCTG 59.896 45.833 0.00 0.00 0.00 4.45
380 391 4.141251 CCACCACTTATTATTAGGCCCTGT 60.141 45.833 0.00 0.00 0.00 4.00
381 392 5.445964 CACCACTTATTATTAGGCCCTGTT 58.554 41.667 0.00 0.00 0.00 3.16
382 393 5.531287 CACCACTTATTATTAGGCCCTGTTC 59.469 44.000 0.00 0.00 0.00 3.18
384 395 4.755123 CACTTATTATTAGGCCCTGTTCGG 59.245 45.833 0.00 0.00 0.00 4.30
385 396 4.411212 ACTTATTATTAGGCCCTGTTCGGT 59.589 41.667 0.00 0.00 0.00 4.69
386 397 5.603813 ACTTATTATTAGGCCCTGTTCGGTA 59.396 40.000 0.00 0.00 0.00 4.02
387 398 4.618920 ATTATTAGGCCCTGTTCGGTAG 57.381 45.455 0.00 0.00 0.00 3.18
388 399 1.875488 ATTAGGCCCTGTTCGGTAGT 58.125 50.000 0.00 0.00 0.00 2.73
389 400 1.188863 TTAGGCCCTGTTCGGTAGTC 58.811 55.000 0.00 0.00 0.00 2.59
390 401 0.040058 TAGGCCCTGTTCGGTAGTCA 59.960 55.000 0.00 0.00 0.00 3.41
391 402 0.617820 AGGCCCTGTTCGGTAGTCAT 60.618 55.000 0.00 0.00 0.00 3.06
392 403 0.179081 GGCCCTGTTCGGTAGTCATC 60.179 60.000 0.00 0.00 0.00 2.92
393 404 0.179081 GCCCTGTTCGGTAGTCATCC 60.179 60.000 0.00 0.00 0.00 3.51
394 405 1.191535 CCCTGTTCGGTAGTCATCCA 58.808 55.000 0.00 0.00 0.00 3.41
395 406 1.137086 CCCTGTTCGGTAGTCATCCAG 59.863 57.143 0.00 0.00 0.00 3.86
396 407 1.471676 CCTGTTCGGTAGTCATCCAGC 60.472 57.143 0.00 0.00 0.00 4.85
397 408 0.535335 TGTTCGGTAGTCATCCAGCC 59.465 55.000 0.00 0.00 0.00 4.85
398 409 0.179081 GTTCGGTAGTCATCCAGCCC 60.179 60.000 0.00 0.00 0.00 5.19
399 410 1.335132 TTCGGTAGTCATCCAGCCCC 61.335 60.000 0.00 0.00 0.00 5.80
400 411 2.822399 GGTAGTCATCCAGCCCCG 59.178 66.667 0.00 0.00 0.00 5.73
401 412 2.808206 GGTAGTCATCCAGCCCCGG 61.808 68.421 0.00 0.00 0.00 5.73
402 413 1.760875 GTAGTCATCCAGCCCCGGA 60.761 63.158 0.73 0.00 40.07 5.14
403 414 1.002403 TAGTCATCCAGCCCCGGAA 59.998 57.895 0.73 0.00 38.95 4.30
404 415 1.048724 TAGTCATCCAGCCCCGGAAG 61.049 60.000 0.73 0.00 38.95 3.46
405 416 3.797353 TCATCCAGCCCCGGAAGC 61.797 66.667 0.73 5.48 38.95 3.86
406 417 4.113815 CATCCAGCCCCGGAAGCA 62.114 66.667 17.33 0.00 38.95 3.91
407 418 4.115199 ATCCAGCCCCGGAAGCAC 62.115 66.667 17.33 0.00 38.95 4.40
427 438 1.433534 GCAGAGCGATATACTTGGGC 58.566 55.000 0.00 0.00 0.00 5.36
428 439 1.702886 CAGAGCGATATACTTGGGCG 58.297 55.000 0.00 0.00 0.00 6.13
429 440 1.269723 CAGAGCGATATACTTGGGCGA 59.730 52.381 0.00 0.00 0.00 5.54
430 441 1.269998 AGAGCGATATACTTGGGCGAC 59.730 52.381 0.00 0.00 0.00 5.19
431 442 1.269998 GAGCGATATACTTGGGCGACT 59.730 52.381 0.00 0.00 0.00 4.18
432 443 1.269998 AGCGATATACTTGGGCGACTC 59.730 52.381 0.00 0.00 0.00 3.36
433 444 1.965083 CGATATACTTGGGCGACTCG 58.035 55.000 0.00 0.00 0.00 4.18
434 445 1.266175 CGATATACTTGGGCGACTCGT 59.734 52.381 0.00 0.00 0.00 4.18
435 446 2.481568 CGATATACTTGGGCGACTCGTA 59.518 50.000 0.00 0.00 0.00 3.43
436 447 3.424565 CGATATACTTGGGCGACTCGTAG 60.425 52.174 0.00 0.00 0.00 3.51
437 448 2.048444 ATACTTGGGCGACTCGTAGA 57.952 50.000 0.00 0.00 0.00 2.59
438 449 1.825090 TACTTGGGCGACTCGTAGAA 58.175 50.000 0.00 0.00 34.09 2.10
439 450 0.963962 ACTTGGGCGACTCGTAGAAA 59.036 50.000 0.00 0.00 34.09 2.52
440 451 1.342174 ACTTGGGCGACTCGTAGAAAA 59.658 47.619 0.00 0.00 34.09 2.29
441 452 2.028385 ACTTGGGCGACTCGTAGAAAAT 60.028 45.455 0.00 0.00 34.09 1.82
442 453 2.004583 TGGGCGACTCGTAGAAAATG 57.995 50.000 0.00 0.00 34.09 2.32
443 454 1.287425 GGGCGACTCGTAGAAAATGG 58.713 55.000 0.00 0.00 34.09 3.16
444 455 1.134907 GGGCGACTCGTAGAAAATGGA 60.135 52.381 0.00 0.00 34.09 3.41
445 456 1.925185 GGCGACTCGTAGAAAATGGAC 59.075 52.381 0.00 0.00 34.09 4.02
446 457 2.416972 GGCGACTCGTAGAAAATGGACT 60.417 50.000 0.00 0.00 34.09 3.85
447 458 2.599082 GCGACTCGTAGAAAATGGACTG 59.401 50.000 0.00 0.00 34.09 3.51
448 459 2.599082 CGACTCGTAGAAAATGGACTGC 59.401 50.000 0.00 0.00 34.09 4.40
449 460 2.599082 GACTCGTAGAAAATGGACTGCG 59.401 50.000 0.00 0.00 41.86 5.18
450 461 2.029290 ACTCGTAGAAAATGGACTGCGT 60.029 45.455 0.00 0.00 41.41 5.24
451 462 2.333926 TCGTAGAAAATGGACTGCGTG 58.666 47.619 0.00 0.00 41.41 5.34
452 463 1.201921 CGTAGAAAATGGACTGCGTGC 60.202 52.381 0.00 0.00 37.43 5.34
453 464 1.130561 GTAGAAAATGGACTGCGTGCC 59.869 52.381 0.00 0.00 0.00 5.01
454 465 1.154225 GAAAATGGACTGCGTGCCG 60.154 57.895 0.00 0.00 0.00 5.69
495 506 2.641305 GAGAGCTACTCCTACCGAACA 58.359 52.381 0.00 0.00 39.53 3.18
496 507 2.614983 GAGAGCTACTCCTACCGAACAG 59.385 54.545 0.00 0.00 39.53 3.16
497 508 1.065851 GAGCTACTCCTACCGAACAGC 59.934 57.143 0.00 0.00 0.00 4.40
498 509 0.248539 GCTACTCCTACCGAACAGCG 60.249 60.000 0.00 0.00 40.47 5.18
499 510 0.248539 CTACTCCTACCGAACAGCGC 60.249 60.000 0.00 0.00 39.11 5.92
500 511 1.660560 TACTCCTACCGAACAGCGCC 61.661 60.000 2.29 0.00 39.11 6.53
501 512 2.678934 TCCTACCGAACAGCGCCT 60.679 61.111 2.29 0.00 39.11 5.52
502 513 2.202756 CCTACCGAACAGCGCCTC 60.203 66.667 2.29 0.00 39.11 4.70
503 514 2.571757 CTACCGAACAGCGCCTCA 59.428 61.111 2.29 0.00 39.11 3.86
504 515 1.080093 CTACCGAACAGCGCCTCAA 60.080 57.895 2.29 0.00 39.11 3.02
505 516 0.460284 CTACCGAACAGCGCCTCAAT 60.460 55.000 2.29 0.00 39.11 2.57
506 517 0.739462 TACCGAACAGCGCCTCAATG 60.739 55.000 2.29 0.00 39.11 2.82
507 518 2.099062 CGAACAGCGCCTCAATGC 59.901 61.111 2.29 0.00 0.00 3.56
508 519 2.679934 CGAACAGCGCCTCAATGCA 61.680 57.895 2.29 0.00 0.00 3.96
514 525 2.488355 CGCCTCAATGCAGCCTTG 59.512 61.111 4.10 4.10 0.00 3.61
516 527 1.214589 GCCTCAATGCAGCCTTGTG 59.785 57.895 9.91 7.71 0.00 3.33
618 636 2.824041 GCCGCGTGATTGGTCCAT 60.824 61.111 4.92 0.00 0.00 3.41
877 938 2.425286 GCGCGCGCTATAAAAGGC 60.425 61.111 44.38 18.46 38.26 4.35
983 1054 4.082787 TCGGTTCGTTAGGGTTTAGTAGTG 60.083 45.833 0.00 0.00 0.00 2.74
985 1056 4.498241 GTTCGTTAGGGTTTAGTAGTGGG 58.502 47.826 0.00 0.00 0.00 4.61
987 1058 3.099141 CGTTAGGGTTTAGTAGTGGGGA 58.901 50.000 0.00 0.00 0.00 4.81
988 1059 3.515104 CGTTAGGGTTTAGTAGTGGGGAA 59.485 47.826 0.00 0.00 0.00 3.97
991 1062 3.451890 AGGGTTTAGTAGTGGGGAAGAG 58.548 50.000 0.00 0.00 0.00 2.85
1146 1256 0.891373 ATCCGCCCGATAGATCTGTG 59.109 55.000 5.18 0.00 39.76 3.66
1168 1290 4.080919 TGAATTCGAGATGGATCTGTGGTT 60.081 41.667 0.04 0.00 37.25 3.67
1171 1293 4.286297 TCGAGATGGATCTGTGGTTTTT 57.714 40.909 0.00 0.00 37.25 1.94
1190 1318 2.479566 TTGCTTGTGGAGATCTGACC 57.520 50.000 0.00 0.00 0.00 4.02
1635 1809 3.043418 TGGCCAGTTATCCTAGTTACCC 58.957 50.000 0.00 0.00 0.00 3.69
1636 1810 2.036862 GGCCAGTTATCCTAGTTACCCG 59.963 54.545 0.00 0.00 0.00 5.28
1637 1811 2.961062 GCCAGTTATCCTAGTTACCCGA 59.039 50.000 0.00 0.00 0.00 5.14
1638 1812 3.577415 GCCAGTTATCCTAGTTACCCGAT 59.423 47.826 0.00 0.00 0.00 4.18
1641 1815 4.077822 AGTTATCCTAGTTACCCGATCCG 58.922 47.826 0.00 0.00 0.00 4.18
1677 1854 2.597505 CCAAAATGTTATCGCTCGCTCG 60.598 50.000 0.00 0.00 0.00 5.03
1679 1856 0.249073 AATGTTATCGCTCGCTCGCT 60.249 50.000 0.00 0.00 0.00 4.93
1680 1857 0.661780 ATGTTATCGCTCGCTCGCTC 60.662 55.000 0.00 0.00 0.00 5.03
1681 1858 2.011881 GTTATCGCTCGCTCGCTCC 61.012 63.158 0.00 0.00 0.00 4.70
1682 1859 3.195591 TTATCGCTCGCTCGCTCCC 62.196 63.158 0.00 0.00 0.00 4.30
1704 1881 2.933906 GAGTATCCTAGATCTCGCTCCG 59.066 54.545 0.00 0.00 0.00 4.63
1727 1904 1.135199 GCGTAGGTTCCGAGATGTTCA 60.135 52.381 0.00 0.00 0.00 3.18
1749 1926 1.202268 GCTACCGTTAGATGTGACGCT 60.202 52.381 1.26 0.00 37.91 5.07
1769 1946 1.336148 TGCTACCGTTCCGTGTTACTG 60.336 52.381 0.00 0.00 0.00 2.74
1771 1950 2.863704 GCTACCGTTCCGTGTTACTGTT 60.864 50.000 0.00 0.00 0.00 3.16
1779 1958 0.668401 CGTGTTACTGTTCCGTCCCC 60.668 60.000 0.00 0.00 0.00 4.81
1781 1960 1.739196 GTTACTGTTCCGTCCCCGC 60.739 63.158 0.00 0.00 0.00 6.13
1784 1963 2.776370 TACTGTTCCGTCCCCGCTCT 62.776 60.000 0.00 0.00 0.00 4.09
1795 1974 2.240500 CCCGCTCTGTTCGCTATGC 61.241 63.158 0.00 0.00 0.00 3.14
1796 1975 1.227089 CCGCTCTGTTCGCTATGCT 60.227 57.895 0.00 0.00 0.00 3.79
1797 1976 0.807667 CCGCTCTGTTCGCTATGCTT 60.808 55.000 0.00 0.00 0.00 3.91
1798 1977 0.574454 CGCTCTGTTCGCTATGCTTC 59.426 55.000 0.00 0.00 0.00 3.86
1799 1978 1.800655 CGCTCTGTTCGCTATGCTTCT 60.801 52.381 0.00 0.00 0.00 2.85
1800 1979 2.541794 CGCTCTGTTCGCTATGCTTCTA 60.542 50.000 0.00 0.00 0.00 2.10
1801 1980 3.448686 GCTCTGTTCGCTATGCTTCTAA 58.551 45.455 0.00 0.00 0.00 2.10
1802 1981 3.489047 GCTCTGTTCGCTATGCTTCTAAG 59.511 47.826 0.00 0.00 0.00 2.18
1803 1982 4.734989 GCTCTGTTCGCTATGCTTCTAAGA 60.735 45.833 0.00 0.00 0.00 2.10
1804 1983 5.521906 TCTGTTCGCTATGCTTCTAAGAT 57.478 39.130 0.00 0.00 0.00 2.40
1817 1996 8.992835 ATGCTTCTAAGATTGAAATGAAAACC 57.007 30.769 0.00 0.00 0.00 3.27
1818 1997 8.181904 TGCTTCTAAGATTGAAATGAAAACCT 57.818 30.769 0.00 0.00 0.00 3.50
1888 2079 1.063327 TTTGTGCCGTGAACGCTTG 59.937 52.632 0.00 0.00 38.18 4.01
1889 2080 2.329678 TTTGTGCCGTGAACGCTTGG 62.330 55.000 0.00 0.00 38.18 3.61
1914 2105 1.136891 GCCACTGGGTGATATTTTGCC 59.863 52.381 0.00 0.00 35.23 4.52
1950 2141 6.404293 GGTGATACGTATTTTGGTGCAGATTT 60.404 38.462 9.92 0.00 0.00 2.17
1951 2142 7.027161 GTGATACGTATTTTGGTGCAGATTTT 58.973 34.615 9.92 0.00 0.00 1.82
1974 2165 0.753111 GCCCCTGAATTCGATTGGCT 60.753 55.000 16.42 0.00 34.61 4.75
1995 2186 3.775654 CTGGGACGTGCTCCTCCC 61.776 72.222 13.99 13.99 46.01 4.30
1997 2188 3.003763 GGGACGTGCTCCTCCCTT 61.004 66.667 13.70 0.00 42.84 3.95
1998 2189 1.684734 GGGACGTGCTCCTCCCTTA 60.685 63.158 13.70 0.00 42.84 2.69
1999 2190 1.262640 GGGACGTGCTCCTCCCTTAA 61.263 60.000 13.70 0.00 42.84 1.85
2000 2191 0.175989 GGACGTGCTCCTCCCTTAAG 59.824 60.000 0.00 0.00 35.89 1.85
2001 2192 0.896226 GACGTGCTCCTCCCTTAAGT 59.104 55.000 0.00 0.00 0.00 2.24
2002 2193 1.275573 GACGTGCTCCTCCCTTAAGTT 59.724 52.381 0.00 0.00 0.00 2.66
2003 2194 1.002087 ACGTGCTCCTCCCTTAAGTTG 59.998 52.381 0.97 0.00 0.00 3.16
2024 2215 6.433093 AGTTGATGTTCCCCAGTATTGTTTAC 59.567 38.462 0.00 0.00 0.00 2.01
2042 2233 7.117241 TGTTTACATTCTCTTCGTTCATGTC 57.883 36.000 0.00 0.00 30.70 3.06
2044 2235 7.441157 TGTTTACATTCTCTTCGTTCATGTCTT 59.559 33.333 0.00 0.00 30.70 3.01
2045 2236 8.922676 GTTTACATTCTCTTCGTTCATGTCTTA 58.077 33.333 0.00 0.00 30.70 2.10
2062 2253 7.330946 TCATGTCTTACGAATTAGTTGTTGGAG 59.669 37.037 0.00 0.00 0.00 3.86
2065 2256 5.929992 TCTTACGAATTAGTTGTTGGAGGTG 59.070 40.000 0.00 0.00 0.00 4.00
2088 2279 9.353999 GGTGTCCAGACAAATATAACAAATTTC 57.646 33.333 1.23 0.00 43.77 2.17
2093 2284 7.257722 CAGACAAATATAACAAATTTCGGCCT 58.742 34.615 0.00 0.00 0.00 5.19
2094 2285 7.759433 CAGACAAATATAACAAATTTCGGCCTT 59.241 33.333 0.00 0.00 0.00 4.35
2095 2286 8.311109 AGACAAATATAACAAATTTCGGCCTTT 58.689 29.630 0.00 0.00 0.00 3.11
2097 2288 7.875554 ACAAATATAACAAATTTCGGCCTTTGT 59.124 29.630 13.53 13.53 45.03 2.83
2098 2289 7.826260 AATATAACAAATTTCGGCCTTTGTG 57.174 32.000 18.47 4.41 42.98 3.33
2099 2290 3.535280 AACAAATTTCGGCCTTTGTGT 57.465 38.095 18.47 8.61 42.98 3.72
2101 2292 4.237349 ACAAATTTCGGCCTTTGTGTAG 57.763 40.909 17.39 0.00 42.38 2.74
2102 2293 3.886505 ACAAATTTCGGCCTTTGTGTAGA 59.113 39.130 17.39 0.00 42.38 2.59
2103 2294 4.339814 ACAAATTTCGGCCTTTGTGTAGAA 59.660 37.500 17.39 1.09 42.38 2.10
2105 2296 3.478857 TTTCGGCCTTTGTGTAGAAGA 57.521 42.857 0.00 0.00 0.00 2.87
2106 2297 3.478857 TTCGGCCTTTGTGTAGAAGAA 57.521 42.857 0.00 0.00 0.00 2.52
2109 2300 3.007506 TCGGCCTTTGTGTAGAAGAATGA 59.992 43.478 0.00 0.00 0.00 2.57
2110 2301 3.751175 CGGCCTTTGTGTAGAAGAATGAA 59.249 43.478 0.00 0.00 0.00 2.57
2111 2302 4.142816 CGGCCTTTGTGTAGAAGAATGAAG 60.143 45.833 0.00 0.00 0.00 3.02
2113 2304 4.457257 GCCTTTGTGTAGAAGAATGAAGCT 59.543 41.667 0.00 0.00 0.00 3.74
2114 2305 5.391416 GCCTTTGTGTAGAAGAATGAAGCTC 60.391 44.000 0.00 0.00 0.00 4.09
2116 2307 4.890158 TGTGTAGAAGAATGAAGCTCCA 57.110 40.909 0.00 0.00 0.00 3.86
2117 2308 5.227569 TGTGTAGAAGAATGAAGCTCCAA 57.772 39.130 0.00 0.00 0.00 3.53
2118 2309 5.240891 TGTGTAGAAGAATGAAGCTCCAAG 58.759 41.667 0.00 0.00 0.00 3.61
2119 2310 4.633565 GTGTAGAAGAATGAAGCTCCAAGG 59.366 45.833 0.00 0.00 0.00 3.61
2121 2312 2.915604 AGAAGAATGAAGCTCCAAGGGA 59.084 45.455 0.00 0.00 0.00 4.20
2122 2313 3.331889 AGAAGAATGAAGCTCCAAGGGAA 59.668 43.478 0.00 0.00 0.00 3.97
2142 2333 6.190954 GGAACCAACACAATGTACTAATCC 57.809 41.667 0.00 0.00 0.00 3.01
2143 2334 5.163794 GGAACCAACACAATGTACTAATCCG 60.164 44.000 0.00 0.00 0.00 4.18
2204 2478 3.281727 TCTTCACTCATATGGCAACCC 57.718 47.619 2.13 0.00 0.00 4.11
2235 2510 5.751990 TCATCAGTGATCAACATCAGATTCG 59.248 40.000 1.56 0.00 39.86 3.34
2247 2522 5.107824 ACATCAGATTCGTCAGATCAACTG 58.892 41.667 0.00 0.00 46.97 3.16
2255 2530 2.480419 CGTCAGATCAACTGTTTGGACC 59.520 50.000 0.00 0.00 45.86 4.46
2288 2566 6.939730 TGCTCCAATAGAAGTGTTTGAATACA 59.060 34.615 0.00 0.00 0.00 2.29
2290 2568 8.462016 GCTCCAATAGAAGTGTTTGAATACATT 58.538 33.333 0.00 0.00 0.00 2.71
2300 2578 8.181904 AGTGTTTGAATACATTGACCTCAAAT 57.818 30.769 11.84 0.00 38.05 2.32
2314 2592 5.047377 TGACCTCAAATTTTATTGGGTGCTC 60.047 40.000 0.00 0.00 35.41 4.26
2343 2637 4.699637 TGAAAATGGACAACTACGACTGT 58.300 39.130 0.00 0.00 0.00 3.55
2353 2647 2.498167 ACTACGACTGTTCCAGTACGT 58.502 47.619 18.46 18.46 45.44 3.57
2354 2648 2.481952 ACTACGACTGTTCCAGTACGTC 59.518 50.000 18.17 3.47 45.44 4.34
2365 2660 1.402259 CCAGTACGTCGAGAGCTCAAT 59.598 52.381 17.77 0.00 0.00 2.57
2367 2662 2.085320 AGTACGTCGAGAGCTCAATGT 58.915 47.619 17.77 14.07 0.00 2.71
2373 2668 3.544285 CGTCGAGAGCTCAATGTTTACTC 59.456 47.826 17.77 0.00 0.00 2.59
2374 2669 4.486090 GTCGAGAGCTCAATGTTTACTCA 58.514 43.478 17.77 0.00 0.00 3.41
2390 4243 7.405292 TGTTTACTCATGGGAAGATTCAATCT 58.595 34.615 0.00 0.00 42.61 2.40
2391 4244 7.554118 TGTTTACTCATGGGAAGATTCAATCTC 59.446 37.037 0.00 0.00 39.08 2.75
2397 4250 5.359194 TGGGAAGATTCAATCTCAGTACC 57.641 43.478 0.00 0.00 39.08 3.34
2398 4251 4.782691 TGGGAAGATTCAATCTCAGTACCA 59.217 41.667 0.00 0.00 39.08 3.25
2399 4252 5.429762 TGGGAAGATTCAATCTCAGTACCAT 59.570 40.000 0.00 0.00 39.08 3.55
2400 4253 5.994668 GGGAAGATTCAATCTCAGTACCATC 59.005 44.000 0.00 0.00 39.08 3.51
2401 4254 6.183361 GGGAAGATTCAATCTCAGTACCATCT 60.183 42.308 0.00 0.00 39.08 2.90
2404 4257 6.580788 AGATTCAATCTCAGTACCATCTGTG 58.419 40.000 0.00 0.00 33.42 3.66
2405 4258 6.407865 AGATTCAATCTCAGTACCATCTGTGG 60.408 42.308 0.00 0.00 43.13 4.17
2406 4259 9.732958 AGATTCAATCTCAGTACCATCTGTGGC 62.733 44.444 0.00 0.00 41.89 5.01
2419 4272 6.124088 CCATCTGTGGCATTTTCTAAGTAC 57.876 41.667 0.00 0.00 39.01 2.73
2420 4273 5.882557 CCATCTGTGGCATTTTCTAAGTACT 59.117 40.000 0.00 0.00 39.01 2.73
2421 4274 6.183360 CCATCTGTGGCATTTTCTAAGTACTG 60.183 42.308 0.00 0.00 39.01 2.74
2422 4275 4.695455 TCTGTGGCATTTTCTAAGTACTGC 59.305 41.667 0.00 0.00 0.00 4.40
2423 4276 3.435327 TGTGGCATTTTCTAAGTACTGCG 59.565 43.478 0.00 0.00 0.00 5.18
2424 4277 3.682858 GTGGCATTTTCTAAGTACTGCGA 59.317 43.478 0.00 0.00 0.00 5.10
2425 4278 3.932710 TGGCATTTTCTAAGTACTGCGAG 59.067 43.478 0.00 0.00 0.00 5.03
2426 4279 4.181578 GGCATTTTCTAAGTACTGCGAGA 58.818 43.478 0.00 0.00 0.00 4.04
2427 4280 4.033014 GGCATTTTCTAAGTACTGCGAGAC 59.967 45.833 0.00 0.00 0.00 3.36
2428 4281 4.259451 GCATTTTCTAAGTACTGCGAGACG 60.259 45.833 0.00 0.00 0.00 4.18
2429 4282 4.754372 TTTTCTAAGTACTGCGAGACGA 57.246 40.909 0.00 0.00 0.00 4.20
2430 4283 4.959596 TTTCTAAGTACTGCGAGACGAT 57.040 40.909 0.00 0.00 0.00 3.73
2431 4284 3.946308 TCTAAGTACTGCGAGACGATG 57.054 47.619 0.00 0.00 0.00 3.84
2432 4285 2.031807 TCTAAGTACTGCGAGACGATGC 59.968 50.000 0.00 0.00 0.00 3.91
2433 4286 0.526211 AAGTACTGCGAGACGATGCA 59.474 50.000 0.00 0.00 39.13 3.96
2437 4290 4.067913 TGCGAGACGATGCAGGCA 62.068 61.111 0.00 0.00 35.90 4.75
2438 4291 2.587194 GCGAGACGATGCAGGCAT 60.587 61.111 6.44 6.44 39.69 4.40
2439 4292 1.300156 GCGAGACGATGCAGGCATA 60.300 57.895 6.76 0.00 36.70 3.14
2440 4293 0.875908 GCGAGACGATGCAGGCATAA 60.876 55.000 6.76 0.00 36.70 1.90
2441 4294 1.788258 CGAGACGATGCAGGCATAAT 58.212 50.000 6.76 0.00 36.70 1.28
2442 4295 2.138320 CGAGACGATGCAGGCATAATT 58.862 47.619 6.76 0.00 36.70 1.40
2443 4296 2.096565 CGAGACGATGCAGGCATAATTG 60.097 50.000 6.76 0.76 36.70 2.32
2444 4297 3.133691 GAGACGATGCAGGCATAATTGA 58.866 45.455 6.76 0.00 36.70 2.57
2445 4298 3.136763 AGACGATGCAGGCATAATTGAG 58.863 45.455 6.76 0.00 36.70 3.02
2446 4299 2.224606 ACGATGCAGGCATAATTGAGG 58.775 47.619 6.76 0.00 36.70 3.86
2447 4300 1.538512 CGATGCAGGCATAATTGAGGG 59.461 52.381 6.76 0.00 36.70 4.30
2448 4301 2.590821 GATGCAGGCATAATTGAGGGT 58.409 47.619 6.76 0.00 36.70 4.34
2449 4302 3.754965 GATGCAGGCATAATTGAGGGTA 58.245 45.455 6.76 0.00 36.70 3.69
2450 4303 3.213206 TGCAGGCATAATTGAGGGTAG 57.787 47.619 0.00 0.00 0.00 3.18
2451 4304 2.509548 TGCAGGCATAATTGAGGGTAGT 59.490 45.455 0.00 0.00 0.00 2.73
2452 4305 3.142174 GCAGGCATAATTGAGGGTAGTC 58.858 50.000 0.00 0.00 0.00 2.59
2453 4306 3.393800 CAGGCATAATTGAGGGTAGTCG 58.606 50.000 0.00 0.00 0.00 4.18
2454 4307 3.039011 AGGCATAATTGAGGGTAGTCGT 58.961 45.455 0.00 0.00 0.00 4.34
2455 4308 3.454812 AGGCATAATTGAGGGTAGTCGTT 59.545 43.478 0.00 0.00 0.00 3.85
2456 4309 3.808174 GGCATAATTGAGGGTAGTCGTTC 59.192 47.826 0.00 0.00 0.00 3.95
2457 4310 3.808174 GCATAATTGAGGGTAGTCGTTCC 59.192 47.826 0.00 0.00 0.00 3.62
2458 4311 4.377897 CATAATTGAGGGTAGTCGTTCCC 58.622 47.826 0.00 0.00 43.71 3.97
2459 4312 1.201424 ATTGAGGGTAGTCGTTCCCC 58.799 55.000 0.00 0.00 44.40 4.81
2460 4313 0.178926 TTGAGGGTAGTCGTTCCCCA 60.179 55.000 0.00 0.00 44.40 4.96
2461 4314 0.901580 TGAGGGTAGTCGTTCCCCAC 60.902 60.000 0.00 0.00 44.40 4.61
2462 4315 0.614134 GAGGGTAGTCGTTCCCCACT 60.614 60.000 0.00 0.00 44.40 4.00
2466 4319 0.450983 GTAGTCGTTCCCCACTCGAG 59.549 60.000 11.84 11.84 34.33 4.04
2502 4355 7.758528 CACTTGTATACTCTTACTAACACCCAC 59.241 40.741 4.17 0.00 0.00 4.61
2503 4356 6.780457 TGTATACTCTTACTAACACCCACC 57.220 41.667 4.17 0.00 0.00 4.61
2505 4358 2.601905 ACTCTTACTAACACCCACCGT 58.398 47.619 0.00 0.00 0.00 4.83
2517 4457 1.822371 ACCCACCGTGGCATTTTAATC 59.178 47.619 12.54 0.00 35.79 1.75
2548 4488 3.841643 CTCATTGCCAAACATCCTTGTC 58.158 45.455 0.00 0.00 34.06 3.18
2549 4489 2.562298 TCATTGCCAAACATCCTTGTCC 59.438 45.455 0.00 0.00 34.06 4.02
2557 4497 3.652057 AACATCCTTGTCCTACCATGG 57.348 47.619 11.19 11.19 34.06 3.66
2558 4498 2.562296 ACATCCTTGTCCTACCATGGT 58.438 47.619 23.55 23.55 32.81 3.55
2568 4508 5.250200 TGTCCTACCATGGTATTTCAACAC 58.750 41.667 24.78 13.11 0.00 3.32
2577 4517 5.132897 TGGTATTTCAACACTTCAATGCC 57.867 39.130 0.00 0.00 33.33 4.40
2587 4527 2.559668 CACTTCAATGCCCACATTCACT 59.440 45.455 0.00 0.00 44.83 3.41
2588 4528 2.821969 ACTTCAATGCCCACATTCACTC 59.178 45.455 0.00 0.00 44.83 3.51
2589 4529 2.583024 TCAATGCCCACATTCACTCA 57.417 45.000 0.00 0.00 44.83 3.41
2590 4530 2.874014 TCAATGCCCACATTCACTCAA 58.126 42.857 0.00 0.00 44.83 3.02
2591 4531 2.821378 TCAATGCCCACATTCACTCAAG 59.179 45.455 0.00 0.00 44.83 3.02
2592 4532 2.821378 CAATGCCCACATTCACTCAAGA 59.179 45.455 0.00 0.00 44.83 3.02
2593 4533 2.885135 TGCCCACATTCACTCAAGAT 57.115 45.000 0.00 0.00 0.00 2.40
2594 4534 2.439409 TGCCCACATTCACTCAAGATG 58.561 47.619 0.00 0.00 0.00 2.90
2595 4535 1.747355 GCCCACATTCACTCAAGATGG 59.253 52.381 0.00 0.00 0.00 3.51
2596 4536 2.372264 CCCACATTCACTCAAGATGGG 58.628 52.381 0.00 0.00 36.96 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 5.596361 TGCATTGTCTTCCTTTTGGTTCTTA 59.404 36.000 0.00 0.00 41.38 2.10
71 72 0.390472 CTTGAGACGGTGAAGCCTCC 60.390 60.000 0.00 0.00 34.25 4.30
128 129 0.391130 CCGGTCCTTCGCATCTTTCA 60.391 55.000 0.00 0.00 0.00 2.69
137 138 3.367498 GGAGAATATGATCCGGTCCTTCG 60.367 52.174 0.00 0.00 0.00 3.79
146 147 7.664731 ACAACAATCAGATGGAGAATATGATCC 59.335 37.037 0.00 0.37 44.62 3.36
153 154 5.748402 TGCTACAACAATCAGATGGAGAAT 58.252 37.500 0.00 0.00 32.91 2.40
172 174 6.360370 AACCTCACTTTTACAGAGATGCTA 57.640 37.500 0.00 0.00 0.00 3.49
196 205 7.308951 GGGACGGAGAGAAAAATTGTAAATTGA 60.309 37.037 0.00 0.00 0.00 2.57
205 214 6.187682 ACATTATGGGACGGAGAGAAAAATT 58.812 36.000 0.00 0.00 0.00 1.82
206 215 5.755849 ACATTATGGGACGGAGAGAAAAAT 58.244 37.500 0.00 0.00 0.00 1.82
207 216 5.174037 ACATTATGGGACGGAGAGAAAAA 57.826 39.130 0.00 0.00 0.00 1.94
208 217 4.837093 ACATTATGGGACGGAGAGAAAA 57.163 40.909 0.00 0.00 0.00 2.29
209 218 5.659525 TCTTACATTATGGGACGGAGAGAAA 59.340 40.000 0.00 0.00 0.00 2.52
210 219 5.068723 GTCTTACATTATGGGACGGAGAGAA 59.931 44.000 0.00 0.00 0.00 2.87
211 220 4.583489 GTCTTACATTATGGGACGGAGAGA 59.417 45.833 0.00 0.00 0.00 3.10
212 221 4.556898 CGTCTTACATTATGGGACGGAGAG 60.557 50.000 20.50 3.12 43.69 3.20
218 227 6.980051 AAAGAACGTCTTACATTATGGGAC 57.020 37.500 0.00 1.75 35.27 4.46
219 228 7.118680 GTCAAAAGAACGTCTTACATTATGGGA 59.881 37.037 0.00 0.00 35.27 4.37
220 229 7.094975 TGTCAAAAGAACGTCTTACATTATGGG 60.095 37.037 0.00 0.00 35.27 4.00
221 230 7.744715 GTGTCAAAAGAACGTCTTACATTATGG 59.255 37.037 0.00 0.00 35.27 2.74
222 231 8.495949 AGTGTCAAAAGAACGTCTTACATTATG 58.504 33.333 0.00 0.00 35.27 1.90
223 232 8.603242 AGTGTCAAAAGAACGTCTTACATTAT 57.397 30.769 0.00 0.00 35.27 1.28
227 236 6.254157 GTGTAGTGTCAAAAGAACGTCTTACA 59.746 38.462 0.00 0.00 35.27 2.41
268 278 2.767505 CCCCCGTCTCATAATGTAAGC 58.232 52.381 0.00 0.00 0.00 3.09
285 295 4.264128 ACCGATAACTATACCTACTCCCCC 60.264 50.000 0.00 0.00 0.00 5.40
297 307 6.732896 AGTTGATTCAGGACCGATAACTAT 57.267 37.500 0.00 0.00 0.00 2.12
298 308 7.649533 TTAGTTGATTCAGGACCGATAACTA 57.350 36.000 0.00 0.00 0.00 2.24
335 346 3.914426 ATGAGCAACTTACTTCGGGAT 57.086 42.857 0.00 0.00 0.00 3.85
366 377 3.971971 ACTACCGAACAGGGCCTAATAAT 59.028 43.478 5.28 0.00 46.96 1.28
367 378 3.377573 ACTACCGAACAGGGCCTAATAA 58.622 45.455 5.28 0.00 46.96 1.40
368 379 2.961062 GACTACCGAACAGGGCCTAATA 59.039 50.000 5.28 0.00 46.96 0.98
369 380 1.761198 GACTACCGAACAGGGCCTAAT 59.239 52.381 5.28 0.00 46.96 1.73
371 382 0.040058 TGACTACCGAACAGGGCCTA 59.960 55.000 5.28 0.00 46.96 3.93
372 383 0.617820 ATGACTACCGAACAGGGCCT 60.618 55.000 0.00 0.00 46.96 5.19
373 384 0.179081 GATGACTACCGAACAGGGCC 60.179 60.000 0.00 0.00 46.96 5.80
374 385 0.179081 GGATGACTACCGAACAGGGC 60.179 60.000 0.00 0.00 46.96 5.19
375 386 1.137086 CTGGATGACTACCGAACAGGG 59.863 57.143 0.00 0.00 46.96 4.45
377 388 1.471676 GGCTGGATGACTACCGAACAG 60.472 57.143 0.00 0.00 0.00 3.16
378 389 0.535335 GGCTGGATGACTACCGAACA 59.465 55.000 0.00 0.00 0.00 3.18
379 390 0.179081 GGGCTGGATGACTACCGAAC 60.179 60.000 0.00 0.00 0.00 3.95
380 391 1.335132 GGGGCTGGATGACTACCGAA 61.335 60.000 0.00 0.00 0.00 4.30
381 392 1.760875 GGGGCTGGATGACTACCGA 60.761 63.158 0.00 0.00 0.00 4.69
382 393 2.822399 GGGGCTGGATGACTACCG 59.178 66.667 0.00 0.00 0.00 4.02
384 395 1.335132 TTCCGGGGCTGGATGACTAC 61.335 60.000 0.00 0.00 38.00 2.73
385 396 1.002403 TTCCGGGGCTGGATGACTA 59.998 57.895 0.00 0.00 38.00 2.59
386 397 2.285368 TTCCGGGGCTGGATGACT 60.285 61.111 0.00 0.00 38.00 3.41
387 398 2.190578 CTTCCGGGGCTGGATGAC 59.809 66.667 0.00 0.00 38.00 3.06
388 399 3.797353 GCTTCCGGGGCTGGATGA 61.797 66.667 0.00 0.00 38.00 2.92
389 400 4.113815 TGCTTCCGGGGCTGGATG 62.114 66.667 18.18 4.29 38.00 3.51
390 401 4.115199 GTGCTTCCGGGGCTGGAT 62.115 66.667 18.18 0.00 38.00 3.41
408 419 1.433534 GCCCAAGTATATCGCTCTGC 58.566 55.000 0.00 0.00 0.00 4.26
409 420 1.269723 TCGCCCAAGTATATCGCTCTG 59.730 52.381 0.00 0.00 0.00 3.35
410 421 1.269998 GTCGCCCAAGTATATCGCTCT 59.730 52.381 0.00 0.00 0.00 4.09
411 422 1.269998 AGTCGCCCAAGTATATCGCTC 59.730 52.381 0.00 0.00 0.00 5.03
412 423 1.269998 GAGTCGCCCAAGTATATCGCT 59.730 52.381 0.00 0.00 0.00 4.93
413 424 1.699343 GAGTCGCCCAAGTATATCGC 58.301 55.000 0.00 0.00 0.00 4.58
414 425 1.266175 ACGAGTCGCCCAAGTATATCG 59.734 52.381 13.59 0.00 35.21 2.92
415 426 3.750130 TCTACGAGTCGCCCAAGTATATC 59.250 47.826 13.59 0.00 0.00 1.63
416 427 3.748083 TCTACGAGTCGCCCAAGTATAT 58.252 45.455 13.59 0.00 0.00 0.86
417 428 3.198409 TCTACGAGTCGCCCAAGTATA 57.802 47.619 13.59 0.00 0.00 1.47
418 429 2.048444 TCTACGAGTCGCCCAAGTAT 57.952 50.000 13.59 0.00 0.00 2.12
419 430 1.825090 TTCTACGAGTCGCCCAAGTA 58.175 50.000 13.59 0.00 0.00 2.24
420 431 0.963962 TTTCTACGAGTCGCCCAAGT 59.036 50.000 13.59 0.00 0.00 3.16
421 432 2.074547 TTTTCTACGAGTCGCCCAAG 57.925 50.000 13.59 5.48 0.00 3.61
422 433 2.343101 CATTTTCTACGAGTCGCCCAA 58.657 47.619 13.59 0.00 0.00 4.12
423 434 1.404986 CCATTTTCTACGAGTCGCCCA 60.405 52.381 13.59 0.00 0.00 5.36
424 435 1.134907 TCCATTTTCTACGAGTCGCCC 60.135 52.381 13.59 0.00 0.00 6.13
425 436 1.925185 GTCCATTTTCTACGAGTCGCC 59.075 52.381 13.59 0.00 0.00 5.54
426 437 2.599082 CAGTCCATTTTCTACGAGTCGC 59.401 50.000 13.59 0.00 0.00 5.19
427 438 2.599082 GCAGTCCATTTTCTACGAGTCG 59.401 50.000 11.85 11.85 0.00 4.18
428 439 2.599082 CGCAGTCCATTTTCTACGAGTC 59.401 50.000 0.00 0.00 0.00 3.36
429 440 2.029290 ACGCAGTCCATTTTCTACGAGT 60.029 45.455 0.00 0.00 29.74 4.18
430 441 2.345641 CACGCAGTCCATTTTCTACGAG 59.654 50.000 0.00 0.00 41.61 4.18
431 442 2.333926 CACGCAGTCCATTTTCTACGA 58.666 47.619 0.00 0.00 41.61 3.43
432 443 1.201921 GCACGCAGTCCATTTTCTACG 60.202 52.381 0.00 0.00 41.61 3.51
433 444 1.130561 GGCACGCAGTCCATTTTCTAC 59.869 52.381 0.00 0.00 41.61 2.59
434 445 1.448985 GGCACGCAGTCCATTTTCTA 58.551 50.000 0.00 0.00 41.61 2.10
435 446 2.257353 GGCACGCAGTCCATTTTCT 58.743 52.632 0.00 0.00 41.61 2.52
436 447 4.868195 GGCACGCAGTCCATTTTC 57.132 55.556 0.00 0.00 41.61 2.29
475 486 2.614983 CTGTTCGGTAGGAGTAGCTCTC 59.385 54.545 0.00 0.00 42.07 3.20
476 487 2.645802 CTGTTCGGTAGGAGTAGCTCT 58.354 52.381 0.00 0.00 0.00 4.09
477 488 1.065851 GCTGTTCGGTAGGAGTAGCTC 59.934 57.143 0.00 0.00 34.48 4.09
478 489 1.104630 GCTGTTCGGTAGGAGTAGCT 58.895 55.000 0.00 0.00 34.48 3.32
479 490 0.248539 CGCTGTTCGGTAGGAGTAGC 60.249 60.000 0.00 0.00 34.17 3.58
480 491 0.248539 GCGCTGTTCGGTAGGAGTAG 60.249 60.000 0.00 0.00 38.94 2.57
481 492 1.660560 GGCGCTGTTCGGTAGGAGTA 61.661 60.000 7.64 0.00 38.94 2.59
482 493 2.572284 GCGCTGTTCGGTAGGAGT 59.428 61.111 0.00 0.00 38.94 3.85
483 494 2.202756 GGCGCTGTTCGGTAGGAG 60.203 66.667 7.64 0.00 38.94 3.69
484 495 2.678934 AGGCGCTGTTCGGTAGGA 60.679 61.111 7.64 0.00 38.94 2.94
485 496 2.202756 GAGGCGCTGTTCGGTAGG 60.203 66.667 7.64 0.00 38.94 3.18
486 497 0.460284 ATTGAGGCGCTGTTCGGTAG 60.460 55.000 7.64 0.00 38.94 3.18
487 498 0.739462 CATTGAGGCGCTGTTCGGTA 60.739 55.000 7.64 0.00 38.94 4.02
488 499 2.034879 CATTGAGGCGCTGTTCGGT 61.035 57.895 7.64 0.00 38.94 4.69
489 500 2.787249 CATTGAGGCGCTGTTCGG 59.213 61.111 7.64 0.00 38.94 4.30
490 501 2.099062 GCATTGAGGCGCTGTTCG 59.901 61.111 7.64 0.00 42.12 3.95
491 502 1.136147 CTGCATTGAGGCGCTGTTC 59.864 57.895 7.64 3.60 36.28 3.18
492 503 2.986306 GCTGCATTGAGGCGCTGTT 61.986 57.895 7.64 0.00 36.28 3.16
493 504 3.437795 GCTGCATTGAGGCGCTGT 61.438 61.111 7.64 0.00 36.28 4.40
494 505 4.189188 GGCTGCATTGAGGCGCTG 62.189 66.667 7.64 0.00 36.28 5.18
495 506 3.933048 AAGGCTGCATTGAGGCGCT 62.933 57.895 7.64 0.00 43.24 5.92
496 507 3.446570 AAGGCTGCATTGAGGCGC 61.447 61.111 0.00 0.00 43.24 6.53
497 508 2.338015 ACAAGGCTGCATTGAGGCG 61.338 57.895 30.65 6.89 43.24 5.52
498 509 1.214589 CACAAGGCTGCATTGAGGC 59.785 57.895 30.65 0.00 38.81 4.70
499 510 1.214589 GCACAAGGCTGCATTGAGG 59.785 57.895 30.65 21.99 40.25 3.86
500 511 0.315886 TTGCACAAGGCTGCATTGAG 59.684 50.000 30.65 24.05 46.47 3.02
501 512 0.751452 TTTGCACAAGGCTGCATTGA 59.249 45.000 30.65 8.36 46.47 2.57
502 513 1.584175 TTTTGCACAAGGCTGCATTG 58.416 45.000 23.65 23.65 46.47 2.82
503 514 2.328819 TTTTTGCACAAGGCTGCATT 57.671 40.000 0.50 0.00 46.47 3.56
525 536 9.942850 TTTCTTTCTTGATATGTGACACTGATA 57.057 29.630 7.20 0.00 0.00 2.15
528 539 7.805071 GGTTTTCTTTCTTGATATGTGACACTG 59.195 37.037 7.20 0.00 0.00 3.66
529 540 7.307989 CGGTTTTCTTTCTTGATATGTGACACT 60.308 37.037 7.20 0.00 0.00 3.55
530 541 6.797033 CGGTTTTCTTTCTTGATATGTGACAC 59.203 38.462 0.00 0.00 0.00 3.67
531 542 6.567701 GCGGTTTTCTTTCTTGATATGTGACA 60.568 38.462 0.00 0.00 0.00 3.58
532 543 5.795441 GCGGTTTTCTTTCTTGATATGTGAC 59.205 40.000 0.00 0.00 0.00 3.67
533 544 5.471797 TGCGGTTTTCTTTCTTGATATGTGA 59.528 36.000 0.00 0.00 0.00 3.58
534 545 5.698832 TGCGGTTTTCTTTCTTGATATGTG 58.301 37.500 0.00 0.00 0.00 3.21
535 546 5.957842 TGCGGTTTTCTTTCTTGATATGT 57.042 34.783 0.00 0.00 0.00 2.29
536 547 7.541783 TGAAATGCGGTTTTCTTTCTTGATATG 59.458 33.333 7.74 0.00 36.71 1.78
537 548 7.542130 GTGAAATGCGGTTTTCTTTCTTGATAT 59.458 33.333 7.74 0.00 36.71 1.63
543 558 4.261614 GGAGTGAAATGCGGTTTTCTTTCT 60.262 41.667 7.74 4.70 36.71 2.52
676 695 0.392595 GGGGAGCGTCTAGGGTTTTG 60.393 60.000 0.00 0.00 0.00 2.44
767 797 3.622514 GATGGGCTCGAGGAGTGT 58.377 61.111 15.58 0.00 31.39 3.55
877 938 4.404098 AAGGTTGCCCTACCCGCG 62.404 66.667 0.00 0.00 41.56 6.46
983 1054 1.492599 CCATTCTTCCTCCTCTTCCCC 59.507 57.143 0.00 0.00 0.00 4.81
985 1056 1.474143 CGCCATTCTTCCTCCTCTTCC 60.474 57.143 0.00 0.00 0.00 3.46
987 1058 0.543749 CCGCCATTCTTCCTCCTCTT 59.456 55.000 0.00 0.00 0.00 2.85
988 1059 0.325671 TCCGCCATTCTTCCTCCTCT 60.326 55.000 0.00 0.00 0.00 3.69
991 1062 1.521681 CGTCCGCCATTCTTCCTCC 60.522 63.158 0.00 0.00 0.00 4.30
1146 1256 4.065321 ACCACAGATCCATCTCGAATTC 57.935 45.455 0.00 0.00 34.22 2.17
1168 1290 3.569701 GGTCAGATCTCCACAAGCAAAAA 59.430 43.478 0.00 0.00 0.00 1.94
1171 1293 1.338105 CGGTCAGATCTCCACAAGCAA 60.338 52.381 0.00 0.00 0.00 3.91
1190 1318 1.142778 CGCCAAAACACACCAAACCG 61.143 55.000 0.00 0.00 0.00 4.44
1635 1809 3.861689 GGTAGACAGGTAAAAACGGATCG 59.138 47.826 0.00 0.00 0.00 3.69
1636 1810 4.824289 TGGTAGACAGGTAAAAACGGATC 58.176 43.478 0.00 0.00 0.00 3.36
1637 1811 4.895668 TGGTAGACAGGTAAAAACGGAT 57.104 40.909 0.00 0.00 0.00 4.18
1638 1812 4.686191 TTGGTAGACAGGTAAAAACGGA 57.314 40.909 0.00 0.00 0.00 4.69
1685 1862 2.674357 GACGGAGCGAGATCTAGGATAC 59.326 54.545 4.92 0.00 0.00 2.24
1686 1863 2.674462 CGACGGAGCGAGATCTAGGATA 60.674 54.545 4.92 0.00 0.00 2.59
1687 1864 1.816074 GACGGAGCGAGATCTAGGAT 58.184 55.000 4.92 0.00 0.00 3.24
1688 1865 0.600518 CGACGGAGCGAGATCTAGGA 60.601 60.000 4.92 0.00 0.00 2.94
1704 1881 0.591741 CATCTCGGAACCTACGCGAC 60.592 60.000 15.93 0.00 0.00 5.19
1727 1904 1.404391 CGTCACATCTAACGGTAGCCT 59.596 52.381 1.48 0.00 35.32 4.58
1779 1958 0.574454 GAAGCATAGCGAACAGAGCG 59.426 55.000 0.00 0.00 40.04 5.03
1781 1960 4.926244 TCTTAGAAGCATAGCGAACAGAG 58.074 43.478 0.00 0.00 0.00 3.35
1784 1963 5.660460 TCAATCTTAGAAGCATAGCGAACA 58.340 37.500 0.00 0.00 0.00 3.18
1795 1974 9.837525 CTCAGGTTTTCATTTCAATCTTAGAAG 57.162 33.333 0.00 0.00 0.00 2.85
1796 1975 8.299570 GCTCAGGTTTTCATTTCAATCTTAGAA 58.700 33.333 0.00 0.00 0.00 2.10
1797 1976 7.448161 TGCTCAGGTTTTCATTTCAATCTTAGA 59.552 33.333 0.00 0.00 0.00 2.10
1798 1977 7.596494 TGCTCAGGTTTTCATTTCAATCTTAG 58.404 34.615 0.00 0.00 0.00 2.18
1799 1978 7.523293 TGCTCAGGTTTTCATTTCAATCTTA 57.477 32.000 0.00 0.00 0.00 2.10
1800 1979 6.409524 TGCTCAGGTTTTCATTTCAATCTT 57.590 33.333 0.00 0.00 0.00 2.40
1801 1980 6.409524 TTGCTCAGGTTTTCATTTCAATCT 57.590 33.333 0.00 0.00 0.00 2.40
1802 1981 6.703165 ACTTTGCTCAGGTTTTCATTTCAATC 59.297 34.615 0.00 0.00 0.00 2.67
1803 1982 6.585416 ACTTTGCTCAGGTTTTCATTTCAAT 58.415 32.000 0.00 0.00 0.00 2.57
1804 1983 5.976458 ACTTTGCTCAGGTTTTCATTTCAA 58.024 33.333 0.00 0.00 0.00 2.69
1816 1995 1.065401 TGCGAACAAACTTTGCTCAGG 59.935 47.619 1.14 0.00 0.00 3.86
1817 1996 2.473530 TGCGAACAAACTTTGCTCAG 57.526 45.000 1.14 0.00 0.00 3.35
1818 1997 2.098934 ACATGCGAACAAACTTTGCTCA 59.901 40.909 1.14 0.00 0.00 4.26
1850 2031 3.553828 ACAGAAGGAACAAACTTCCGA 57.446 42.857 0.00 0.00 44.13 4.55
1858 2039 1.403679 CGGCACAAACAGAAGGAACAA 59.596 47.619 0.00 0.00 0.00 2.83
1859 2040 1.021202 CGGCACAAACAGAAGGAACA 58.979 50.000 0.00 0.00 0.00 3.18
1860 2041 1.021968 ACGGCACAAACAGAAGGAAC 58.978 50.000 0.00 0.00 0.00 3.62
1861 2042 1.021202 CACGGCACAAACAGAAGGAA 58.979 50.000 0.00 0.00 0.00 3.36
1862 2043 0.179234 TCACGGCACAAACAGAAGGA 59.821 50.000 0.00 0.00 0.00 3.36
1863 2044 1.021202 TTCACGGCACAAACAGAAGG 58.979 50.000 0.00 0.00 0.00 3.46
1864 2045 1.594518 CGTTCACGGCACAAACAGAAG 60.595 52.381 0.00 0.00 35.37 2.85
1889 2080 0.106519 ATATCACCCAGTGGCAAGGC 60.107 55.000 2.61 0.00 33.87 4.35
1897 2088 1.102978 GCGGCAAAATATCACCCAGT 58.897 50.000 0.00 0.00 0.00 4.00
1902 2093 0.814457 TGGGTGCGGCAAAATATCAC 59.186 50.000 3.23 0.00 0.00 3.06
1927 2118 6.751514 AAATCTGCACCAAAATACGTATCA 57.248 33.333 8.86 0.00 0.00 2.15
1928 2119 7.027161 ACAAAATCTGCACCAAAATACGTATC 58.973 34.615 8.86 0.00 0.00 2.24
1929 2120 6.919721 ACAAAATCTGCACCAAAATACGTAT 58.080 32.000 1.14 1.14 0.00 3.06
1930 2121 6.320494 ACAAAATCTGCACCAAAATACGTA 57.680 33.333 0.00 0.00 0.00 3.57
1931 2122 5.195001 ACAAAATCTGCACCAAAATACGT 57.805 34.783 0.00 0.00 0.00 3.57
1932 2123 5.286082 GCTACAAAATCTGCACCAAAATACG 59.714 40.000 0.00 0.00 0.00 3.06
1933 2124 5.576774 GGCTACAAAATCTGCACCAAAATAC 59.423 40.000 0.00 0.00 0.00 1.89
1934 2125 5.337169 GGGCTACAAAATCTGCACCAAAATA 60.337 40.000 0.00 0.00 0.00 1.40
1935 2126 4.563374 GGGCTACAAAATCTGCACCAAAAT 60.563 41.667 0.00 0.00 0.00 1.82
1950 2141 3.278574 CAATCGAATTCAGGGGCTACAA 58.721 45.455 6.22 0.00 0.00 2.41
1951 2142 2.421388 CCAATCGAATTCAGGGGCTACA 60.421 50.000 6.22 0.00 0.00 2.74
1974 2165 3.371063 GGAGCACGTCCCAGTCGA 61.371 66.667 0.00 0.00 39.88 4.20
1983 2174 1.002087 CAACTTAAGGGAGGAGCACGT 59.998 52.381 7.53 0.00 0.00 4.49
1995 2186 6.659242 ACAATACTGGGGAACATCAACTTAAG 59.341 38.462 0.00 0.00 0.00 1.85
1997 2188 6.134535 ACAATACTGGGGAACATCAACTTA 57.865 37.500 0.00 0.00 0.00 2.24
1998 2189 4.998051 ACAATACTGGGGAACATCAACTT 58.002 39.130 0.00 0.00 0.00 2.66
1999 2190 4.657814 ACAATACTGGGGAACATCAACT 57.342 40.909 0.00 0.00 0.00 3.16
2000 2191 5.722021 AAACAATACTGGGGAACATCAAC 57.278 39.130 0.00 0.00 0.00 3.18
2001 2192 6.307776 TGTAAACAATACTGGGGAACATCAA 58.692 36.000 0.00 0.00 0.00 2.57
2002 2193 5.882040 TGTAAACAATACTGGGGAACATCA 58.118 37.500 0.00 0.00 0.00 3.07
2003 2194 7.339466 AGAATGTAAACAATACTGGGGAACATC 59.661 37.037 0.00 0.00 0.00 3.06
2024 2215 5.800438 TCGTAAGACATGAACGAAGAGAATG 59.200 40.000 0.00 0.00 45.01 2.67
2042 2233 5.699458 ACACCTCCAACAACTAATTCGTAAG 59.301 40.000 0.00 0.00 0.00 2.34
2044 2235 5.217978 ACACCTCCAACAACTAATTCGTA 57.782 39.130 0.00 0.00 0.00 3.43
2045 2236 4.062991 GACACCTCCAACAACTAATTCGT 58.937 43.478 0.00 0.00 0.00 3.85
2052 2243 1.141053 GTCTGGACACCTCCAACAACT 59.859 52.381 0.00 0.00 46.63 3.16
2062 2253 9.353999 GAAATTTGTTATATTTGTCTGGACACC 57.646 33.333 2.65 0.00 41.67 4.16
2065 2256 7.220108 GCCGAAATTTGTTATATTTGTCTGGAC 59.780 37.037 0.00 0.00 0.00 4.02
2073 2264 7.875554 ACACAAAGGCCGAAATTTGTTATATTT 59.124 29.630 15.99 0.00 44.96 1.40
2077 2268 5.208463 ACACAAAGGCCGAAATTTGTTAT 57.792 34.783 15.99 6.96 44.96 1.89
2088 2279 3.334691 TCATTCTTCTACACAAAGGCCG 58.665 45.455 0.00 0.00 0.00 6.13
2093 2284 5.620206 TGGAGCTTCATTCTTCTACACAAA 58.380 37.500 0.00 0.00 0.00 2.83
2094 2285 5.227569 TGGAGCTTCATTCTTCTACACAA 57.772 39.130 0.00 0.00 0.00 3.33
2095 2286 4.890158 TGGAGCTTCATTCTTCTACACA 57.110 40.909 0.00 0.00 0.00 3.72
2097 2288 4.323792 CCCTTGGAGCTTCATTCTTCTACA 60.324 45.833 0.00 0.00 0.00 2.74
2098 2289 4.080863 TCCCTTGGAGCTTCATTCTTCTAC 60.081 45.833 0.00 0.00 0.00 2.59
2099 2290 4.104086 TCCCTTGGAGCTTCATTCTTCTA 58.896 43.478 0.00 0.00 0.00 2.10
2101 2292 3.356529 TCCCTTGGAGCTTCATTCTTC 57.643 47.619 0.00 0.00 0.00 2.87
2102 2293 3.425659 GTTCCCTTGGAGCTTCATTCTT 58.574 45.455 0.00 0.00 31.21 2.52
2103 2294 2.291217 GGTTCCCTTGGAGCTTCATTCT 60.291 50.000 0.00 0.00 33.37 2.40
2105 2296 1.428912 TGGTTCCCTTGGAGCTTCATT 59.571 47.619 0.00 0.00 33.37 2.57
2106 2297 1.075601 TGGTTCCCTTGGAGCTTCAT 58.924 50.000 0.00 0.00 33.37 2.57
2109 2300 0.555769 TGTTGGTTCCCTTGGAGCTT 59.444 50.000 0.00 0.00 33.37 3.74
2110 2301 0.178990 GTGTTGGTTCCCTTGGAGCT 60.179 55.000 0.00 0.00 33.37 4.09
2111 2302 0.467290 TGTGTTGGTTCCCTTGGAGC 60.467 55.000 0.00 0.00 31.21 4.70
2113 2304 2.315176 CATTGTGTTGGTTCCCTTGGA 58.685 47.619 0.00 0.00 0.00 3.53
2114 2305 2.038659 ACATTGTGTTGGTTCCCTTGG 58.961 47.619 0.00 0.00 0.00 3.61
2116 2307 4.178956 AGTACATTGTGTTGGTTCCCTT 57.821 40.909 0.00 0.00 0.00 3.95
2117 2308 3.876309 AGTACATTGTGTTGGTTCCCT 57.124 42.857 0.00 0.00 0.00 4.20
2118 2309 5.124936 GGATTAGTACATTGTGTTGGTTCCC 59.875 44.000 0.00 0.00 0.00 3.97
2119 2310 5.163794 CGGATTAGTACATTGTGTTGGTTCC 60.164 44.000 0.00 0.00 0.00 3.62
2121 2312 5.180492 CACGGATTAGTACATTGTGTTGGTT 59.820 40.000 0.00 0.00 0.00 3.67
2122 2313 4.693566 CACGGATTAGTACATTGTGTTGGT 59.306 41.667 0.00 0.00 0.00 3.67
2124 2315 6.662414 ATCACGGATTAGTACATTGTGTTG 57.338 37.500 0.00 0.00 0.00 3.33
2125 2316 7.606456 AGAAATCACGGATTAGTACATTGTGTT 59.394 33.333 0.00 0.00 31.46 3.32
2126 2317 7.103641 AGAAATCACGGATTAGTACATTGTGT 58.896 34.615 0.00 0.00 31.46 3.72
2128 2319 9.832445 ATTAGAAATCACGGATTAGTACATTGT 57.168 29.630 0.00 0.00 31.46 2.71
2132 2323 9.878667 TTCAATTAGAAATCACGGATTAGTACA 57.121 29.630 0.00 0.00 31.46 2.90
2138 2329 9.099454 GAGTACTTCAATTAGAAATCACGGATT 57.901 33.333 0.00 0.00 35.40 3.01
2140 2331 7.608153 TGAGTACTTCAATTAGAAATCACGGA 58.392 34.615 0.00 0.00 35.40 4.69
2141 2332 7.827819 TGAGTACTTCAATTAGAAATCACGG 57.172 36.000 0.00 0.00 35.40 4.94
2166 2440 9.995003 GAGTGAAGAATCAGAATATCCTTACAT 57.005 33.333 0.00 0.00 35.88 2.29
2168 2442 9.995003 ATGAGTGAAGAATCAGAATATCCTTAC 57.005 33.333 0.00 0.00 35.88 2.34
2176 2450 6.598503 TGCCATATGAGTGAAGAATCAGAAT 58.401 36.000 3.65 0.00 35.88 2.40
2184 2458 2.846206 AGGGTTGCCATATGAGTGAAGA 59.154 45.455 3.65 0.00 0.00 2.87
2190 2464 4.130118 GACTAACAGGGTTGCCATATGAG 58.870 47.826 3.65 0.00 0.00 2.90
2196 2470 1.702401 TGATGACTAACAGGGTTGCCA 59.298 47.619 0.00 0.00 0.00 4.92
2197 2471 2.290323 ACTGATGACTAACAGGGTTGCC 60.290 50.000 0.00 0.00 38.30 4.52
2204 2478 6.815142 TGATGTTGATCACTGATGACTAACAG 59.185 38.462 0.00 0.00 42.52 3.16
2235 2510 3.476552 TGGTCCAAACAGTTGATCTGAC 58.523 45.455 0.00 0.00 46.27 3.51
2247 2522 0.610232 AGCATGCTCCTGGTCCAAAC 60.610 55.000 16.30 0.00 0.00 2.93
2288 2566 6.013466 AGCACCCAATAAAATTTGAGGTCAAT 60.013 34.615 0.00 0.00 35.55 2.57
2290 2568 4.837860 AGCACCCAATAAAATTTGAGGTCA 59.162 37.500 0.00 0.00 31.74 4.02
2300 2578 7.953005 TTCAGATATTGAGCACCCAATAAAA 57.047 32.000 9.28 2.48 40.92 1.52
2304 2582 6.183360 CCATTTTCAGATATTGAGCACCCAAT 60.183 38.462 0.00 0.00 39.76 3.16
2314 2592 8.116753 GTCGTAGTTGTCCATTTTCAGATATTG 58.883 37.037 0.00 0.00 0.00 1.90
2343 2637 1.085091 GAGCTCTCGACGTACTGGAA 58.915 55.000 6.43 0.00 0.00 3.53
2353 2647 4.783764 TGAGTAAACATTGAGCTCTCGA 57.216 40.909 16.19 1.15 0.00 4.04
2354 2648 4.269603 CCATGAGTAAACATTGAGCTCTCG 59.730 45.833 16.19 5.68 0.00 4.04
2365 2660 7.405292 AGATTGAATCTTCCCATGAGTAAACA 58.595 34.615 0.97 0.00 35.76 2.83
2367 2662 7.632861 TGAGATTGAATCTTCCCATGAGTAAA 58.367 34.615 9.35 0.00 40.38 2.01
2373 2668 5.762218 GGTACTGAGATTGAATCTTCCCATG 59.238 44.000 9.35 1.06 40.38 3.66
2374 2669 5.429762 TGGTACTGAGATTGAATCTTCCCAT 59.570 40.000 9.35 0.00 40.38 4.00
2397 4250 6.676456 GCAGTACTTAGAAAATGCCACAGATG 60.676 42.308 0.00 0.00 0.00 2.90
2398 4251 5.355350 GCAGTACTTAGAAAATGCCACAGAT 59.645 40.000 0.00 0.00 0.00 2.90
2399 4252 4.695455 GCAGTACTTAGAAAATGCCACAGA 59.305 41.667 0.00 0.00 0.00 3.41
2400 4253 4.436050 CGCAGTACTTAGAAAATGCCACAG 60.436 45.833 0.00 0.00 0.00 3.66
2401 4254 3.435327 CGCAGTACTTAGAAAATGCCACA 59.565 43.478 0.00 0.00 0.00 4.17
2404 4257 4.033014 GTCTCGCAGTACTTAGAAAATGCC 59.967 45.833 0.00 0.00 0.00 4.40
2405 4258 4.259451 CGTCTCGCAGTACTTAGAAAATGC 60.259 45.833 0.00 2.77 0.00 3.56
2406 4259 5.093457 TCGTCTCGCAGTACTTAGAAAATG 58.907 41.667 0.00 0.00 0.00 2.32
2407 4260 5.306532 TCGTCTCGCAGTACTTAGAAAAT 57.693 39.130 0.00 0.00 0.00 1.82
2408 4261 4.754372 TCGTCTCGCAGTACTTAGAAAA 57.246 40.909 0.00 0.00 0.00 2.29
2409 4262 4.659088 CATCGTCTCGCAGTACTTAGAAA 58.341 43.478 0.00 0.00 0.00 2.52
2410 4263 3.487042 GCATCGTCTCGCAGTACTTAGAA 60.487 47.826 0.00 0.00 0.00 2.10
2411 4264 2.031807 GCATCGTCTCGCAGTACTTAGA 59.968 50.000 0.00 0.00 0.00 2.10
2412 4265 2.223272 TGCATCGTCTCGCAGTACTTAG 60.223 50.000 0.00 0.00 33.34 2.18
2413 4266 1.741145 TGCATCGTCTCGCAGTACTTA 59.259 47.619 0.00 0.00 33.34 2.24
2414 4267 0.526211 TGCATCGTCTCGCAGTACTT 59.474 50.000 0.00 0.00 33.34 2.24
2415 4268 2.180674 TGCATCGTCTCGCAGTACT 58.819 52.632 0.00 0.00 33.34 2.73
2416 4269 4.785950 TGCATCGTCTCGCAGTAC 57.214 55.556 0.00 0.00 33.34 2.73
2420 4273 2.015227 TATGCCTGCATCGTCTCGCA 62.015 55.000 8.09 0.00 37.82 5.10
2421 4274 0.875908 TTATGCCTGCATCGTCTCGC 60.876 55.000 8.09 0.00 37.82 5.03
2422 4275 1.788258 ATTATGCCTGCATCGTCTCG 58.212 50.000 8.09 0.00 37.82 4.04
2423 4276 3.133691 TCAATTATGCCTGCATCGTCTC 58.866 45.455 8.09 0.00 37.82 3.36
2424 4277 3.136763 CTCAATTATGCCTGCATCGTCT 58.863 45.455 8.09 0.00 37.82 4.18
2425 4278 2.225019 CCTCAATTATGCCTGCATCGTC 59.775 50.000 8.09 0.00 37.82 4.20
2426 4279 2.224606 CCTCAATTATGCCTGCATCGT 58.775 47.619 8.09 0.00 37.82 3.73
2427 4280 1.538512 CCCTCAATTATGCCTGCATCG 59.461 52.381 8.09 0.00 37.82 3.84
2428 4281 2.590821 ACCCTCAATTATGCCTGCATC 58.409 47.619 8.09 0.00 37.82 3.91
2429 4282 2.761786 ACCCTCAATTATGCCTGCAT 57.238 45.000 9.87 9.87 40.19 3.96
2430 4283 2.509548 ACTACCCTCAATTATGCCTGCA 59.490 45.455 0.00 0.00 0.00 4.41
2431 4284 3.142174 GACTACCCTCAATTATGCCTGC 58.858 50.000 0.00 0.00 0.00 4.85
2432 4285 3.181465 ACGACTACCCTCAATTATGCCTG 60.181 47.826 0.00 0.00 0.00 4.85
2433 4286 3.039011 ACGACTACCCTCAATTATGCCT 58.961 45.455 0.00 0.00 0.00 4.75
2434 4287 3.470645 ACGACTACCCTCAATTATGCC 57.529 47.619 0.00 0.00 0.00 4.40
2435 4288 3.808174 GGAACGACTACCCTCAATTATGC 59.192 47.826 0.00 0.00 0.00 3.14
2436 4289 4.377897 GGGAACGACTACCCTCAATTATG 58.622 47.826 0.00 0.00 42.56 1.90
2437 4290 3.390311 GGGGAACGACTACCCTCAATTAT 59.610 47.826 0.00 0.00 44.97 1.28
2438 4291 2.767960 GGGGAACGACTACCCTCAATTA 59.232 50.000 0.00 0.00 44.97 1.40
2439 4292 1.558294 GGGGAACGACTACCCTCAATT 59.442 52.381 0.00 0.00 44.97 2.32
2440 4293 1.201424 GGGGAACGACTACCCTCAAT 58.799 55.000 0.00 0.00 44.97 2.57
2441 4294 0.178926 TGGGGAACGACTACCCTCAA 60.179 55.000 10.41 0.00 44.97 3.02
2442 4295 0.901580 GTGGGGAACGACTACCCTCA 60.902 60.000 10.41 0.00 44.97 3.86
2443 4296 1.895966 GTGGGGAACGACTACCCTC 59.104 63.158 10.41 3.95 44.97 4.30
2444 4297 4.125239 GTGGGGAACGACTACCCT 57.875 61.111 10.41 0.00 44.97 4.34
2450 4303 1.212229 GTCTCGAGTGGGGAACGAC 59.788 63.158 13.13 0.00 39.69 4.34
2451 4304 1.074423 AGTCTCGAGTGGGGAACGA 59.926 57.895 13.13 0.00 34.90 3.85
2452 4305 1.213013 CAGTCTCGAGTGGGGAACG 59.787 63.158 13.13 0.00 0.00 3.95
2453 4306 1.592223 CCAGTCTCGAGTGGGGAAC 59.408 63.158 13.13 1.63 45.90 3.62
2454 4307 4.113617 CCAGTCTCGAGTGGGGAA 57.886 61.111 13.13 0.00 45.90 3.97
2459 4312 1.821753 AGTGGATTCCAGTCTCGAGTG 59.178 52.381 13.13 4.04 30.18 3.51
2460 4313 2.223803 AGTGGATTCCAGTCTCGAGT 57.776 50.000 13.13 0.00 30.18 4.18
2461 4314 2.232452 ACAAGTGGATTCCAGTCTCGAG 59.768 50.000 13.46 5.93 35.94 4.04
2462 4315 2.248248 ACAAGTGGATTCCAGTCTCGA 58.752 47.619 13.46 0.00 35.94 4.04
2466 4319 6.472686 AGAGTATACAAGTGGATTCCAGTC 57.527 41.667 13.46 0.00 35.94 3.51
2502 4355 1.750778 AGCCTGATTAAAATGCCACGG 59.249 47.619 0.00 0.00 0.00 4.94
2503 4356 4.836125 ATAGCCTGATTAAAATGCCACG 57.164 40.909 0.00 0.00 0.00 4.94
2505 4358 5.634118 AGCTATAGCCTGATTAAAATGCCA 58.366 37.500 21.17 0.00 43.38 4.92
2506 4359 5.707298 TGAGCTATAGCCTGATTAAAATGCC 59.293 40.000 21.17 0.00 43.38 4.40
2507 4360 6.808008 TGAGCTATAGCCTGATTAAAATGC 57.192 37.500 21.17 0.00 43.38 3.56
2508 4361 7.754027 GCAATGAGCTATAGCCTGATTAAAATG 59.246 37.037 21.17 7.96 43.38 2.32
2509 4362 7.094032 GGCAATGAGCTATAGCCTGATTAAAAT 60.094 37.037 21.17 0.00 44.79 1.82
2517 4457 2.556144 TGGCAATGAGCTATAGCCTG 57.444 50.000 21.17 13.84 45.42 4.85
2548 4488 5.943416 TGAAGTGTTGAAATACCATGGTAGG 59.057 40.000 27.83 0.00 33.77 3.18
2549 4489 7.447374 TTGAAGTGTTGAAATACCATGGTAG 57.553 36.000 27.83 0.00 33.77 3.18
2557 4497 4.923281 GTGGGCATTGAAGTGTTGAAATAC 59.077 41.667 0.00 0.00 0.00 1.89
2558 4498 4.586421 TGTGGGCATTGAAGTGTTGAAATA 59.414 37.500 0.00 0.00 0.00 1.40
2568 4508 2.821378 TGAGTGAATGTGGGCATTGAAG 59.179 45.455 0.00 0.00 44.61 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.